AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519000 MtrunA17_Chr1g0210011 86.486 37 5 0 42 78 492 528 6.16e-18 78.2
Msa0519000 MtrunA17_Chr6g0471001 69.444 36 11 0 43 78 583 618 5.19e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCTGATAAGGTTATTT+TGG 0.129147 3_4:+70921323 Msa0519000:three_prime_UTR
ATTGAATGCTCAAATGTATT+TGG 0.176146 3_4:+70918206 Msa0519000:CDS
GAGTAAATGTATGGAGGATA+TGG 0.234869 3_4:+70916580 Msa0519000:CDS
CTACAGGTTGAAGAGGATTT+TGG 0.270337 3_4:+70916850 Msa0519000:intron
GACTGCACATGGACACATTA+AGG 0.275916 3_4:+70916385 Msa0519000:five_prime_UTR
CTATCTTTGTGTTTCTGTTT+CGG 0.296918 3_4:+70919441 Msa0519000:CDS
TGAAACAGGACAAACTGTTT+TGG 0.303724 3_4:+70919945 Msa0519000:intron
GTAAGAGGAAAGATCGTTAA+AGG 0.315527 3_4:+70916446 Msa0519000:five_prime_UTR
TACAAAGTACTGTATTTATA+TGG 0.327615 3_4:-70921203 None:intergenic
CTTGGGTGTTGTGATATCTT+AGG 0.353429 3_4:+70920050 Msa0519000:three_prime_UTR
ATGACCAAAATAACCTTATC+AGG 0.354107 3_4:-70921327 None:intergenic
AGGAGAGGTGTTGGCAACTT+AGG 0.356177 3_4:+70919476 Msa0519000:CDS
TGCTCAAATGTATTTGGATA+TGG 0.360208 3_4:+70918212 Msa0519000:CDS
GGACACATTAAGGGTGTGTT+TGG 0.375329 3_4:+70916395 Msa0519000:five_prime_UTR
TACATTCAACAATGAACAAT+AGG 0.376920 3_4:+70920237 Msa0519000:three_prime_UTR
CCCTCTCATCTTCTCTGCTC+TGG 0.384528 3_4:-70916542 None:intergenic
GTAAACGAAGAGCACATTAT+AGG 0.386672 3_4:-70921440 None:intergenic
TGTTTCGGCCACCACATGAT+AGG 0.388269 3_4:+70919456 Msa0519000:CDS
ATTGGAGAAGGAAACCATTC+AGG 0.390426 3_4:-70918252 None:intergenic
GTGATTGACTTCACCTGATA+AGG 0.392851 3_4:+70921314 Msa0519000:three_prime_UTR
GGGTCCTCTCGGCCTTCAAC+AGG 0.392881 3_4:+70919966 Msa0519000:CDS
GGAGAGGTGTTGGCAACTTA+GGG 0.421021 3_4:+70919477 Msa0519000:CDS
GTGATCAGAGAGTAAATGTA+TGG 0.429517 3_4:+70916571 Msa0519000:CDS
AGTAAATGTATGGAGGATAT+GGG 0.431529 3_4:+70916581 Msa0519000:CDS
TTTGTGATTTAAAGCATTGT+TGG 0.432450 3_4:+70920013 Msa0519000:three_prime_UTR
ATTTGGATATGGAGGACAAA+GGG 0.437364 3_4:+70918223 Msa0519000:CDS
TTGATCATCATGCATAAGAT+AGG 0.438319 3_4:+70921278 Msa0519000:three_prime_UTR
TACATTTGAGCATTCAATAG+TGG 0.454695 3_4:-70918201 None:intergenic
CTAAATATAATCCTACTCAT+AGG 0.459737 3_4:+70920075 Msa0519000:three_prime_UTR
TTGCGTCCCGTGCTGTCGCA+CGG 0.465383 3_4:-70921463 None:intergenic
AAAATGATTGATGGTGTTTG+TGG 0.468332 3_4:+70916516 Msa0519000:exon
TACATTGAGCACACAACCTA+TGG 0.489626 3_4:-70920185 None:intergenic
ACTGCACATGGACACATTAA+GGG 0.493732 3_4:+70916386 Msa0519000:five_prime_UTR
TGAACTCGTATACCTGTTGA+AGG 0.496345 3_4:-70919978 None:intergenic
GTTAAAGGAAAGAAAGTATG+AGG 0.496719 3_4:+70916461 Msa0519000:five_prime_UTR
GAAAGTATGAGGAAAGTGAA+TGG 0.498728 3_4:+70916472 Msa0519000:five_prime_UTR
TGCGTCCCGTGCTGTCGCAC+GGG 0.518842 3_4:-70921462 None:intergenic
TCTAAGAGTTTCTATTCTCT+CGG 0.530513 3_4:+70921238 Msa0519000:three_prime_UTR
CCACATGATAGGAGAGGTGT+TGG 0.541066 3_4:+70919467 Msa0519000:CDS
CGTTTACCCGTGCGACAGCA+CGG 0.542824 3_4:+70921456 Msa0519000:three_prime_UTR
ATAGGTTGTGTGCTCAATGT+AGG 0.545494 3_4:+70920187 Msa0519000:three_prime_UTR
GTTTACCCGTGCGACAGCAC+GGG 0.547248 3_4:+70921457 Msa0519000:three_prime_UTR
GCTCATATGTCGTGTGCTCA+AGG 0.547277 3_4:+70920262 Msa0519000:three_prime_UTR
ATGTAAGCATAATATCATCT+TGG 0.559750 3_4:+70920119 Msa0519000:three_prime_UTR
ACACCATAAAATACAACGAA+AGG 0.568318 3_4:-70921401 None:intergenic
CCAGAGCAGAGAAGATGAGA+GGG 0.569683 3_4:+70916542 Msa0519000:CDS
ATCAGAGAGTAAATGTATGG+AGG 0.579509 3_4:+70916574 Msa0519000:CDS
TTTGGATATGGAGGACAAAG+GGG 0.593511 3_4:+70918224 Msa0519000:CDS
GCCAGAGCAGAGAAGATGAG+AGG 0.600101 3_4:+70916541 Msa0519000:CDS
GTAAATGTATGGAGGATATG+GGG 0.601739 3_4:+70916582 Msa0519000:CDS
ATAATCCTACTCATAGCCAT+AGG 0.603797 3_4:+70920169 Msa0519000:three_prime_UTR
TCAAATGTATTTGGATATGG+AGG 0.605535 3_4:+70918215 Msa0519000:CDS
TATTTGGATATGGAGGACAA+AGG 0.606231 3_4:+70918222 Msa0519000:CDS
GAGCAGAGAAGATGAGAGGG+AGG 0.607437 3_4:+70916545 Msa0519000:CDS
CAACTTAGGGGCGTTGTGTG+TGG 0.611061 3_4:+70919490 Msa0519000:CDS
GGATCACCAAAGAAAGTGAG+AGG 0.617012 3_4:+70916416 Msa0519000:five_prime_UTR
ACACCTCTCCTATCATGTGG+TGG 0.625790 3_4:-70919464 None:intergenic
CACTAATCCTACACCAATGG+GGG 0.626204 3_4:-70916759 None:intergenic
CACAACCTATGGCTATGAGT+AGG 0.630462 3_4:-70920174 None:intergenic
CCAACACCTCTCCTATCATG+TGG 0.636462 3_4:-70919467 None:intergenic
TGTACTCATTAGACTGCACA+TGG 0.636967 3_4:+70916374 None:intergenic
ACAAAGGGGAGATACCTGAA+TGG 0.653986 3_4:+70918238 Msa0519000:CDS
GAGAGGTGTTGGCAACTTAG+GGG 0.659916 3_4:+70919478 Msa0519000:CDS
CGGCCACCACATGATAGGAG+AGG 0.668099 3_4:+70919461 Msa0519000:CDS
TCACTAATCCTACACCAATG+GGG 0.698104 3_4:-70916760 None:intergenic
TATACCTGTTGAAGGCCGAG+AGG 0.715952 3_4:-70919970 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAAAATTCAATTGTTT+GGG + chr3_4:70916632-70916651 Msa0519000:intron 15.0%
!! TAAAAAAATTCAATTGTTTG+GGG + chr3_4:70916633-70916652 Msa0519000:intron 15.0%
!! TTATAGAGAGAAAAATTATA+AGG - chr3_4:70917539-70917558 None:intergenic 15.0%
!!! TATAATTTTTCTCTCTATAA+AGG + chr3_4:70917539-70917558 Msa0519000:intron 15.0%
!!! AATTTATCTGAATTTGTTTA+TGG + chr3_4:70917981-70918000 Msa0519000:intron 15.0%
!! ACAATTAAAAAGAAAATTAC+AGG - chr3_4:70918030-70918049 None:intergenic 15.0%
!!! TCAAGTTTTTGATAAATAAT+TGG + chr3_4:70918837-70918856 Msa0519000:intron 15.0%
!!! CAGTTTTCTTTTATATATTT+TGG + chr3_4:70919014-70919033 Msa0519000:intron 15.0%
!!! ACTTTTTGATTAAGATTTTT+GGG + chr3_4:70919915-70919934 Msa0519000:intron 15.0%
!!! GGATTAAATTTTTAAAAAAG+AGG + chr3_4:70920381-70920400 Msa0519000:intron 15.0%
!! GATTAAATAATCTTTATAGT+TGG + chr3_4:70920451-70920470 Msa0519000:intron 15.0%
!!! CCAAACAATTGAATTTTTTT+AGG - chr3_4:70916634-70916653 None:intergenic 20.0%
!! CCTAAAAAAATTCAATTGTT+TGG + chr3_4:70916631-70916650 Msa0519000:intron 20.0%
!!! TGTTTTTTATTTTTCACTAC+AGG + chr3_4:70916834-70916853 Msa0519000:intron 20.0%
!!! TGTAATTTGAGTTTAAATTG+AGG + chr3_4:70917008-70917027 Msa0519000:intron 20.0%
!! CTATTGTTTACTTCTTTATA+TGG + chr3_4:70917254-70917273 Msa0519000:intron 20.0%
!! AAAATTTGATCATTTAAGCA+AGG - chr3_4:70917281-70917300 None:intergenic 20.0%
!! AATAAATATGCAAAGTAGAA+TGG + chr3_4:70917351-70917370 Msa0519000:intron 20.0%
!!! TTCCTTTTCATTATTTTAGT+GGG + chr3_4:70917672-70917691 Msa0519000:intron 20.0%
!! GAATTTATTGAAATGTGAAT+TGG + chr3_4:70917818-70917837 Msa0519000:intron 20.0%
!! AATAAGAAGAAGAGAAAAAA+AGG - chr3_4:70917948-70917967 None:intergenic 20.0%
!! CAAGCATGATATATAAAATT+AGG - chr3_4:70918104-70918123 None:intergenic 20.0%
!!! CTAATTTTATATATCATGCT+TGG + chr3_4:70918102-70918121 Msa0519000:intron 20.0%
!! AGTGATAGTAATATAATCTA+TGG + chr3_4:70918389-70918408 Msa0519000:intron 20.0%
!! TATTTATCAAAAACTTGACT+TGG - chr3_4:70918835-70918854 None:intergenic 20.0%
!!! TTTTGATAAATAATTGGACA+TGG + chr3_4:70918843-70918862 Msa0519000:intron 20.0%
!!! TGTTTTGTGAAATGTAATTT+TGG + chr3_4:70919084-70919103 Msa0519000:intron 20.0%
!! CATTTCATATATTATTGTTC+AGG + chr3_4:70919779-70919798 Msa0519000:intron 20.0%
!!! GACTTTTTGATTAAGATTTT+TGG + chr3_4:70919914-70919933 Msa0519000:intron 20.0%
!! TGATATATAAATGCTTTATG+TGG + chr3_4:70920627-70920646 Msa0519000:intron 20.0%
!! TTATTTATCTACCATTGATA+TGG - chr3_4:70920670-70920689 None:intergenic 20.0%
!!! TTATTAGGGACATTTTTTAT+TGG - chr3_4:70920844-70920863 None:intergenic 20.0%
!! AATAAAAAATGTCCCTAATA+AGG + chr3_4:70920843-70920862 Msa0519000:intron 20.0%
!!! GATTTTATATCAAGATAACA+TGG + chr3_4:70920981-70921000 Msa0519000:intron 20.0%
!!! TACAAAGTACTGTATTTATA+TGG - chr3_4:70921206-70921225 None:intergenic 20.0%
!!! TATTTTGGTCATAAGTATTT+TGG + chr3_4:70921338-70921357 Msa0519000:three_prime_UTR 20.0%
!! TTTTTGAACTCATGAACAAA+GGG - chr3_4:70916499-70916518 None:intergenic 25.0%
!!! TTTTTTGAACTCATGAACAA+AGG - chr3_4:70916500-70916519 None:intergenic 25.0%
! TGAGTTCAAAAAATGATTGA+TGG + chr3_4:70916507-70916526 Msa0519000:exon 25.0%
! AATCAAAACTGAAATTGTAG+GGG - chr3_4:70916739-70916758 None:intergenic 25.0%
! GAATCAAAACTGAAATTGTA+GGG - chr3_4:70916740-70916759 None:intergenic 25.0%
! GATTAGTGACAATTTATGTT+TGG + chr3_4:70916774-70916793 Msa0519000:intron 25.0%
! TTATGCTAATTTCGTCAATA+GGG + chr3_4:70916907-70916926 Msa0519000:intron 25.0%
!!! AGGACTGTAATTTTAGTTTT+TGG + chr3_4:70917028-70917047 Msa0519000:intron 25.0%
! ATATAACATAACGACAAACT+CGG - chr3_4:70917314-70917333 None:intergenic 25.0%
! TTAACACAAATCAGAATAGT+TGG - chr3_4:70917477-70917496 None:intergenic 25.0%
! TAGAGAGAAAAATTATAAGG+AGG - chr3_4:70917536-70917555 None:intergenic 25.0%
!!! CTTCCTTTTCATTATTTTAG+TGG + chr3_4:70917671-70917690 Msa0519000:intron 25.0%
! AACCCACTAAAATAATGAAA+AGG - chr3_4:70917677-70917696 None:intergenic 25.0%
! TTATTGAAATGTGAATTGGA+TGG + chr3_4:70917822-70917841 Msa0519000:intron 25.0%
! GACTATAAAGATTACAGATA+CGG + chr3_4:70917875-70917894 Msa0519000:intron 25.0%
! TTTGGAGGTTAATTTCTATT+TGG + chr3_4:70918151-70918170 Msa0519000:intron 25.0%
! ATTGAATGCTCAAATGTATT+TGG + chr3_4:70918206-70918225 Msa0519000:CDS 25.0%
! TGTTTGTTTACCTGAAAAAT+TGG - chr3_4:70918273-70918292 None:intergenic 25.0%
!!! TTTTTCAGGTAAACAAACAA+AGG + chr3_4:70918274-70918293 Msa0519000:intron 25.0%
! CATTTCATATATTACTGTTC+AGG + chr3_4:70918701-70918720 Msa0519000:intron 25.0%
!!! TTTTTTAAAGCTTACCAGAA+TGG + chr3_4:70918728-70918747 Msa0519000:intron 25.0%
!!! AGTTGATTTTAGAAACTTGA+TGG + chr3_4:70918779-70918798 Msa0519000:intron 25.0%
! ATGCACAAAAAAAGGAATAT+AGG - chr3_4:70918929-70918948 None:intergenic 25.0%
! TTGAAAATCTGGAAGAAAAT+GGG - chr3_4:70918986-70919005 None:intergenic 25.0%
! TTTGAAAATCTGGAAGAAAA+TGG - chr3_4:70918987-70919006 None:intergenic 25.0%
!! CTGAAGTTAATTTGAAAATC+TGG - chr3_4:70918997-70919016 None:intergenic 25.0%
! AGAAGATAACTTCAAATAAG+AGG - chr3_4:70919183-70919202 None:intergenic 25.0%
!! TTGATTTTACAAACCATTGT+TGG + chr3_4:70919272-70919291 Msa0519000:intron 25.0%
! TTGAATGTATCCATGTAAAT+CGG + chr3_4:70919677-70919696 Msa0519000:intron 25.0%
!!! TTTGTGATTTAAAGCATTGT+TGG + chr3_4:70920013-70920032 Msa0519000:three_prime_UTR 25.0%
! CTAAATATAATCCTACTCAT+AGG + chr3_4:70920075-70920094 Msa0519000:three_prime_UTR 25.0%
! ATGTAAGCATAATATCATCT+TGG + chr3_4:70920119-70920138 Msa0519000:three_prime_UTR 25.0%
! TACATTCAACAATGAACAAT+AGG + chr3_4:70920237-70920256 Msa0519000:three_prime_UTR 25.0%
! TCAAGTAATGAAATCATTAG+AGG - chr3_4:70920297-70920316 None:intergenic 25.0%
! TGAAAATAACAGATGATCAA+AGG + chr3_4:70920314-70920333 Msa0519000:intron 25.0%
! TATTAGGAGTTTATAGAGTA+TGG - chr3_4:70920521-70920540 None:intergenic 25.0%
! TGGAAAATTATGTGCATATT+AGG - chr3_4:70920537-70920556 None:intergenic 25.0%
! TTGATATGGTAACATTCTAA+GGG - chr3_4:70920656-70920675 None:intergenic 25.0%
! ATTGATATGGTAACATTCTA+AGG - chr3_4:70920657-70920676 None:intergenic 25.0%
! TTAGAATGTTACCATATCAA+TGG + chr3_4:70920656-70920675 Msa0519000:intron 25.0%
! TCAATGGTAGATAAATAATG+AGG + chr3_4:70920672-70920691 Msa0519000:intron 25.0%
! GCCTTTCAAATTGTAAAATT+AGG + chr3_4:70920787-70920806 Msa0519000:intron 25.0%
!! GCCTAATTTTACAATTTGAA+AGG - chr3_4:70920791-70920810 None:intergenic 25.0%
! TAATGTTGGATTCCTTATTA+GGG - chr3_4:70920858-70920877 None:intergenic 25.0%
! AAAAATGTGTATCAAGTACT+TGG - chr3_4:70921148-70921167 None:intergenic 25.0%
!! TTTCCTTTCGTTGTATTTTA+TGG + chr3_4:70921398-70921417 Msa0519000:three_prime_UTR 25.0%
! ATTTTTCCTCTCACTTTCTT+TGG - chr3_4:70916425-70916444 None:intergenic 30.0%
! GTTAAAGGAAAGAAAGTATG+AGG + chr3_4:70916461-70916480 Msa0519000:five_prime_UTR 30.0%
!! AAAATGATTGATGGTGTTTG+TGG + chr3_4:70916516-70916535 Msa0519000:exon 30.0%
AGTAAATGTATGGAGGATAT+GGG + chr3_4:70916581-70916600 Msa0519000:CDS 30.0%
! TTCAATTGTTTGGGGTTAAT+TGG + chr3_4:70916641-70916660 Msa0519000:intron 30.0%
! TCAATTGTTTGGGGTTAATT+GGG + chr3_4:70916642-70916661 Msa0519000:intron 30.0%
AACTTCCTGAGAGAAAATAA+AGG + chr3_4:70916667-70916686 Msa0519000:intron 30.0%
ACTTCCTGAGAGAAAATAAA+GGG + chr3_4:70916668-70916687 Msa0519000:intron 30.0%
ATCAAAACTGAAATTGTAGG+GGG - chr3_4:70916738-70916757 None:intergenic 30.0%
GGAATCAAAACTGAAATTGT+AGG - chr3_4:70916741-70916760 None:intergenic 30.0%
CTTATGCTAATTTCGTCAAT+AGG + chr3_4:70916906-70916925 Msa0519000:intron 30.0%
TATGCTAATTTCGTCAATAG+GGG + chr3_4:70916908-70916927 Msa0519000:intron 30.0%
!!! TTTTTTTATTGTTCGTGACC+AGG + chr3_4:70916948-70916967 Msa0519000:intron 30.0%
TACAATTCCAAAATCTTACC+TGG - chr3_4:70916969-70916988 None:intergenic 30.0%
!!! TGCGATTTTTTTTCGTTTGT+TGG + chr3_4:70917094-70917113 Msa0519000:intron 30.0%
!!! GATTTTTTTTCGTTTGTTGG+AGG + chr3_4:70917097-70917116 Msa0519000:intron 30.0%
GAGTTTGTCGTTATGTTATA+TGG + chr3_4:70917313-70917332 Msa0519000:intron 30.0%
! TCGTTATGTTATATGGCTTT+TGG + chr3_4:70917320-70917339 Msa0519000:intron 30.0%
! CGTTATGTTATATGGCTTTT+GGG + chr3_4:70917321-70917340 Msa0519000:intron 30.0%
ATATGCAAAGTAGAATGGAA+AGG + chr3_4:70917356-70917375 Msa0519000:intron 30.0%
! GCATCACAAAAAAATGCTTT+TGG + chr3_4:70917435-70917454 Msa0519000:intron 30.0%
GAGGAGTGAAATAATGAATT+TGG - chr3_4:70917517-70917536 None:intergenic 30.0%
AAGGAAAATAATATGCAGGT+TGG - chr3_4:70917622-70917641 None:intergenic 30.0%
!!! TTTAGTGGGTTGAATCATTT+TGG + chr3_4:70917686-70917705 Msa0519000:intron 30.0%
CCTTACATGAAAATCATTTG+AGG - chr3_4:70917913-70917932 None:intergenic 30.0%
! CCTCAAATGATTTTCATGTA+AGG + chr3_4:70917910-70917929 Msa0519000:intron 30.0%
ATTCACTTCCAAACATAAGA+TGG - chr3_4:70918059-70918078 None:intergenic 30.0%
TACATTTGAGCATTCAATAG+TGG - chr3_4:70918204-70918223 None:intergenic 30.0%
TGCTCAAATGTATTTGGATA+TGG + chr3_4:70918212-70918231 Msa0519000:CDS 30.0%
TCAAATGTATTTGGATATGG+AGG + chr3_4:70918215-70918234 Msa0519000:CDS 30.0%
TTTACCTGAAAAATTGGAGA+AGG - chr3_4:70918267-70918286 None:intergenic 30.0%
TTTGAATGTATTGCATGCAT+TGG + chr3_4:70918486-70918505 Msa0519000:intron 30.0%
TTGAATGTATCCACGTAAAT+TGG + chr3_4:70918599-70918618 Msa0519000:intron 30.0%
ATGTCTTCAATATCAAGTCT+CGG + chr3_4:70918654-70918673 Msa0519000:intron 30.0%
! TTAGGTATAGCATTTTTCTC+TGG + chr3_4:70918903-70918922 Msa0519000:intron 30.0%
TGTCTTGAATGCACAAAAAA+AGG - chr3_4:70918937-70918956 None:intergenic 30.0%
AAAACAATATTAGCAAGCCT+AGG - chr3_4:70919070-70919089 None:intergenic 30.0%
GATAACTTCAAATAAGAGGA+AGG - chr3_4:70919179-70919198 None:intergenic 30.0%
! CTATCTTTGTGTTTCTGTTT+CGG + chr3_4:70919441-70919460 Msa0519000:CDS 30.0%
TGACATCTATATGTCCTAAT+GGG - chr3_4:70919631-70919650 None:intergenic 30.0%
TTGACATCTATATGTCCTAA+TGG - chr3_4:70919632-70919651 None:intergenic 30.0%
ACATCTTCAATATCAAGTCT+TGG + chr3_4:70919732-70919751 Msa0519000:intron 30.0%
AGACAAAAAAACCTATGAGT+AGG - chr3_4:70920089-70920108 None:intergenic 30.0%
GTAATGAAATCATTAGAGGT+AGG - chr3_4:70920293-70920312 None:intergenic 30.0%
CTTAATGAAGGTTTCTTCAT+TGG + chr3_4:70920360-70920379 Msa0519000:intron 30.0%
GTAATGTTGGATTCCTTATT+AGG - chr3_4:70920859-70920878 None:intergenic 30.0%
CAACATTAGTATTAGTTGCA+GGG - chr3_4:70920961-70920980 None:intergenic 30.0%
TCTAAGAGTTTCTATTCTCT+CGG + chr3_4:70921238-70921257 Msa0519000:three_prime_UTR 30.0%
TTGATCATCATGCATAAGAT+AGG + chr3_4:70921278-70921297 Msa0519000:three_prime_UTR 30.0%
! TTCACCTGATAAGGTTATTT+TGG + chr3_4:70921323-70921342 Msa0519000:three_prime_UTR 30.0%
ATGACCAAAATAACCTTATC+AGG - chr3_4:70921330-70921349 None:intergenic 30.0%
ACACCATAAAATACAACGAA+AGG - chr3_4:70921404-70921423 None:intergenic 30.0%
! CGTTGTATTTTATGGTGTTT+TGG + chr3_4:70921406-70921425 Msa0519000:three_prime_UTR 30.0%
GTGAGAGGAAAAATTGTAAG+AGG + chr3_4:70916431-70916450 Msa0519000:five_prime_UTR 35.0%
GTAAGAGGAAAGATCGTTAA+AGG + chr3_4:70916446-70916465 Msa0519000:five_prime_UTR 35.0%
! GAAAGTATGAGGAAAGTGAA+TGG + chr3_4:70916472-70916491 Msa0519000:five_prime_UTR 35.0%
GTGATCAGAGAGTAAATGTA+TGG + chr3_4:70916571-70916590 Msa0519000:CDS 35.0%
ATCAGAGAGTAAATGTATGG+AGG + chr3_4:70916574-70916593 Msa0519000:CDS 35.0%
GAGTAAATGTATGGAGGATA+TGG + chr3_4:70916580-70916599 Msa0519000:CDS 35.0%
GTAAATGTATGGAGGATATG+GGG + chr3_4:70916582-70916601 Msa0519000:CDS 35.0%
!!! ATCACCCTTTATTTTCTCTC+AGG - chr3_4:70916675-70916694 None:intergenic 35.0%
CAGAACAGAATTACAGAAGA+GGG - chr3_4:70916702-70916721 None:intergenic 35.0%
ACAGAACAGAATTACAGAAG+AGG - chr3_4:70916703-70916722 None:intergenic 35.0%
TCTTCTGTAATTCTGTTCTG+TGG + chr3_4:70916702-70916721 Msa0519000:intron 35.0%
AAAACAGTGATGATAGTCAG+TGG - chr3_4:70916820-70916839 None:intergenic 35.0%
!! TTTTTCACTACAGGTTGAAG+AGG + chr3_4:70916843-70916862 Msa0519000:intron 35.0%
TGACGAAATTAGCATAAGAG+TGG - chr3_4:70916904-70916923 None:intergenic 35.0%
!! GAGTTTCAAGGTTTTGTAGT+TGG + chr3_4:70917221-70917240 Msa0519000:intron 35.0%
! TATGTTATATGGCTTTTGGG+AGG + chr3_4:70917324-70917343 Msa0519000:intron 35.0%
!!! GAATGGAAAGGTGTTTTGTT+TGG + chr3_4:70917368-70917387 Msa0519000:intron 35.0%
GCAGAAGGAAAATAATATGC+AGG - chr3_4:70917626-70917645 None:intergenic 35.0%
GTATCAGTCCATCTTATGTT+TGG + chr3_4:70918048-70918067 Msa0519000:intron 35.0%
! TATATCATGCTTGGTTCTCT+TGG + chr3_4:70918111-70918130 Msa0519000:intron 35.0%
!!! GTAGTTTTGACGAACATGTT+TGG + chr3_4:70918133-70918152 Msa0519000:intron 35.0%
TTCTATTTGGCCATTGTTCT+TGG + chr3_4:70918164-70918183 Msa0519000:intron 35.0%
TATTTGGATATGGAGGACAA+AGG + chr3_4:70918222-70918241 Msa0519000:CDS 35.0%
ATTTGGATATGGAGGACAAA+GGG + chr3_4:70918223-70918242 Msa0519000:CDS 35.0%
! GTTTCCTTCTCCAATTTTTC+AGG + chr3_4:70918260-70918279 Msa0519000:CDS 35.0%
AAGTGTAGAGCTATAACCAA+TGG - chr3_4:70918313-70918332 None:intergenic 35.0%
CAATGATCGAAATCTCACTT+AGG + chr3_4:70918885-70918904 Msa0519000:intron 35.0%
GAAGAAAATGGGACTGAATT+CGG - chr3_4:70918975-70918994 None:intergenic 35.0%
!! GTTGCTTTGTCTGTTTTCTA+TGG + chr3_4:70919106-70919125 Msa0519000:intron 35.0%
!! TTGTTTTTCATCTCCTCTCA+AGG + chr3_4:70919132-70919151 Msa0519000:intron 35.0%
ATGCAATAAACTGCCAACAA+TGG - chr3_4:70919288-70919307 None:intergenic 35.0%
! TGTTATAGGTGCTCTTTTTG+CGG + chr3_4:70919351-70919370 Msa0519000:intron 35.0%
!! TTGGTGCTAGATAGAGTATA+AGG + chr3_4:70919751-70919770 Msa0519000:intron 35.0%
! GAGCTTTTTGTAAAGCTTAC+CGG + chr3_4:70919801-70919820 Msa0519000:intron 35.0%
ATCTGATGCATTTGTGTGAA+GGG + chr3_4:70919839-70919858 Msa0519000:intron 35.0%
! TGAAACAGGACAAACTGTTT+TGG + chr3_4:70919945-70919964 Msa0519000:intron 35.0%
! GAAACAGGACAAACTGTTTT+GGG + chr3_4:70919946-70919965 Msa0519000:intron 35.0%
ATAATCCTACTCATAGCCAT+AGG + chr3_4:70920169-70920188 Msa0519000:three_prime_UTR 35.0%
ACTAATAGCAGATCTGTGAT+TGG + chr3_4:70920337-70920356 Msa0519000:intron 35.0%
!! ATCTGTGATTGGCTTAATGA+AGG + chr3_4:70920348-70920367 Msa0519000:intron 35.0%
GTTATTATAGTGTGCACATG+AGG + chr3_4:70920495-70920514 Msa0519000:intron 35.0%
ATTAGTATTAGTTGCAGGGA+TGG - chr3_4:70920957-70920976 None:intergenic 35.0%
CCAACATTAGTATTAGTTGC+AGG - chr3_4:70920962-70920981 None:intergenic 35.0%
CCTGCAACTAATACTAATGT+TGG + chr3_4:70920959-70920978 Msa0519000:intron 35.0%
! GTAAACGAAGAGCACATTAT+AGG - chr3_4:70921443-70921462 None:intergenic 35.0%
ACTGCACATGGACACATTAA+GGG + chr3_4:70916386-70916405 Msa0519000:five_prime_UTR 40.0%
!!! TTCAGTTTTGATTCCCCCAT+TGG + chr3_4:70916746-70916765 Msa0519000:intron 40.0%
TCACTAATCCTACACCAATG+GGG - chr3_4:70916763-70916782 None:intergenic 40.0%
GTCACTAATCCTACACCAAT+GGG - chr3_4:70916764-70916783 None:intergenic 40.0%
TGTCACTAATCCTACACCAA+TGG - chr3_4:70916765-70916784 None:intergenic 40.0%
!! CTACAGGTTGAAGAGGATTT+TGG + chr3_4:70916850-70916869 Msa0519000:intron 40.0%
!! GTTGAAGAGGATTTTGGTCA+TGG + chr3_4:70916856-70916875 Msa0519000:CDS 40.0%
! TTCGTGACCAGGTAAGATTT+TGG + chr3_4:70916959-70916978 Msa0519000:intron 40.0%
ACATGTGCAATCGAGTTTCA+AGG + chr3_4:70917209-70917228 Msa0519000:intron 40.0%
TCAAGCTTGCATAGCTTATG+CGG + chr3_4:70917413-70917432 Msa0519000:intron 40.0%
GATCAAATGACTGAAGCAGA+AGG - chr3_4:70917641-70917660 None:intergenic 40.0%
!! GTTTTGACGAACATGTTTGG+AGG + chr3_4:70918136-70918155 Msa0519000:intron 40.0%
TTTGGATATGGAGGACAAAG+GGG + chr3_4:70918224-70918243 Msa0519000:CDS 40.0%
ATTGGAGAAGGAAACCATTC+AGG - chr3_4:70918255-70918274 None:intergenic 40.0%
AGGATACTTCATGCTTCCAT+TGG + chr3_4:70918294-70918313 Msa0519000:intron 40.0%
! TGTATTGCATGCATTGGTGT+CGG + chr3_4:70918492-70918511 Msa0519000:intron 40.0%
TGAACACAACAATGCACAGA+CGG + chr3_4:70918536-70918555 Msa0519000:intron 40.0%
GTATCCACGTAAATTGGTGT+CGG + chr3_4:70918605-70918624 Msa0519000:intron 40.0%
! TATCCACGTAAATTGGTGTC+GGG + chr3_4:70918606-70918625 Msa0519000:intron 40.0%
!! TCGGTGCTAGATAGAGTATA+AGG + chr3_4:70918673-70918692 Msa0519000:intron 40.0%
TTAAAGCTTACCAGAATGGC+AGG + chr3_4:70918732-70918751 Msa0519000:intron 40.0%
TGGATGAGTACTTATTTGCG+TGG + chr3_4:70919034-70919053 Msa0519000:intron 40.0%
TGCGTGGATTTATTGTTCCT+AGG + chr3_4:70919050-70919069 Msa0519000:intron 40.0%
TCCCAAACCATTGTTCGATT+GGG + chr3_4:70919313-70919332 Msa0519000:intron 40.0%
!!! GTTCTTCAGCAGGTTTTTTC+AGG + chr3_4:70919524-70919543 Msa0519000:intron 40.0%
!!! CTTTTCCCCTTCTGTTTTTG+CGG + chr3_4:70919547-70919566 Msa0519000:intron 40.0%
GTAATGGTTGTTGTCCCATT+AGG + chr3_4:70919614-70919633 Msa0519000:intron 40.0%
GTATCCATGTAAATCGGTGT+CGG + chr3_4:70919683-70919702 Msa0519000:intron 40.0%
! TATCCATGTAAATCGGTGTC+GGG + chr3_4:70919684-70919703 Msa0519000:intron 40.0%
CATCTGATGCATTTGTGTGA+AGG + chr3_4:70919838-70919857 Msa0519000:intron 40.0%
TGAACTCGTATACCTGTTGA+AGG - chr3_4:70919981-70920000 None:intergenic 40.0%
!! TTGGTGCTAGACAAAAAGCT+TGG + chr3_4:70920032-70920051 Msa0519000:three_prime_UTR 40.0%
! TGGTGCTAGACAAAAAGCTT+GGG + chr3_4:70920033-70920052 Msa0519000:three_prime_UTR 40.0%
! CTTGGGTGTTGTGATATCTT+AGG + chr3_4:70920050-70920069 Msa0519000:three_prime_UTR 40.0%
TACATTGAGCACACAACCTA+TGG - chr3_4:70920188-70920207 None:intergenic 40.0%
ATAGGTTGTGTGCTCAATGT+AGG + chr3_4:70920187-70920206 Msa0519000:three_prime_UTR 40.0%
AGAGGACAAAAGTCTGTCAT+TGG + chr3_4:70920399-70920418 Msa0519000:intron 40.0%
ACGATTTGAGCTACACAAAG+TGG - chr3_4:70920557-70920576 None:intergenic 40.0%
! CATGACTCTAGAGGAATTAG+TGG - chr3_4:70920890-70920909 None:intergenic 40.0%
AGTTATGAGCATGACTCTAG+AGG - chr3_4:70920899-70920918 None:intergenic 40.0%
! GTGATTGACTTCACCTGATA+AGG + chr3_4:70921314-70921333 Msa0519000:three_prime_UTR 40.0%
GACTGCACATGGACACATTA+AGG + chr3_4:70916385-70916404 Msa0519000:five_prime_UTR 45.0%
! GGACACATTAAGGGTGTGTT+TGG + chr3_4:70916395-70916414 Msa0519000:five_prime_UTR 45.0%
GGATCACCAAAGAAAGTGAG+AGG + chr3_4:70916416-70916435 Msa0519000:five_prime_UTR 45.0%
TTTGATTCCCCCATTGGTGT+AGG + chr3_4:70916752-70916771 Msa0519000:intron 45.0%
CACTAATCCTACACCAATGG+GGG - chr3_4:70916762-70916781 None:intergenic 45.0%
AGCGACTACGAAAGTGAAGT+AGG + chr3_4:70917778-70917797 Msa0519000:intron 45.0%
CCATCTTCTGCCAAGAACAA+TGG - chr3_4:70918177-70918196 None:intergenic 45.0%
CCATTGTTCTTGGCAGAAGA+TGG + chr3_4:70918174-70918193 Msa0519000:intron 45.0%
ACAAAGGGGAGATACCTGAA+TGG + chr3_4:70918238-70918257 Msa0519000:CDS 45.0%
CTCCCAAACCATTGTTCGAT+TGG + chr3_4:70919312-70919331 Msa0519000:intron 45.0%
CCCCAATCGAACAATGGTTT+GGG - chr3_4:70919317-70919336 None:intergenic 45.0%
CCCAAACCATTGTTCGATTG+GGG + chr3_4:70919314-70919333 Msa0519000:intron 45.0%
ACCCCAATCGAACAATGGTT+TGG - chr3_4:70919318-70919337 None:intergenic 45.0%
!!! GTTTTCAGGTGTTCTTCAGC+AGG + chr3_4:70919514-70919533 Msa0519000:CDS 45.0%
CAGAACCGCAAAAACAGAAG+GGG - chr3_4:70919555-70919574 None:intergenic 45.0%
GCAGAACCGCAAAAACAGAA+GGG - chr3_4:70919556-70919575 None:intergenic 45.0%
TGCAGAACCGCAAAAACAGA+AGG - chr3_4:70919557-70919576 None:intergenic 45.0%
!!! TCTGTTTTTGCGGTTCTGCA+TGG + chr3_4:70919557-70919576 Msa0519000:intron 45.0%
!!! CTGTTTTTGCGGTTCTGCAT+GGG + chr3_4:70919558-70919577 Msa0519000:intron 45.0%
GATGTGCTAAACAGCATAGC+AGG - chr3_4:70919589-70919608 None:intergenic 45.0%
TTTAGCACATCCGCGTGTAA+TGG + chr3_4:70919598-70919617 Msa0519000:intron 45.0%
GTAAAGCTTACCGGAATTGC+AGG + chr3_4:70919810-70919829 Msa0519000:intron 45.0%
AGATGCAATGCCTGCAATTC+CGG - chr3_4:70919823-70919842 None:intergenic 45.0%
! TTTTGGGCTGACGTTGAAAC+AGG + chr3_4:70919931-70919950 Msa0519000:intron 45.0%
!! CAAACTGTTTTGGGTCCTCT+CGG + chr3_4:70919955-70919974 Msa0519000:CDS 45.0%
CACAACCTATGGCTATGAGT+AGG - chr3_4:70920177-70920196 None:intergenic 45.0%
GTATTAGTTGCAGGGATGGT+GGG - chr3_4:70920953-70920972 None:intergenic 45.0%
AGTATTAGTTGCAGGGATGG+TGG - chr3_4:70920954-70920973 None:intergenic 45.0%
CCAGAGCAGAGAAGATGAGA+GGG + chr3_4:70916542-70916561 Msa0519000:CDS 50.0%
TGATGCAATGCCTGCCATTC+TGG - chr3_4:70918745-70918764 None:intergenic 50.0%
! ATGGCAGGCATTGCATCAGA+AGG + chr3_4:70918747-70918766 Msa0519000:intron 50.0%
TCATCTCCTCTCAAGGTGAG+AGG + chr3_4:70919139-70919158 Msa0519000:intron 50.0%
TTCCTTCCTCTCACCTTGAG+AGG - chr3_4:70919148-70919167 None:intergenic 50.0%
CACTCACCCCAATCGAACAA+TGG - chr3_4:70919323-70919342 None:intergenic 50.0%
CATTGTTCGATTGGGGTGAG+TGG + chr3_4:70919321-70919340 Msa0519000:intron 50.0%
!! TGAGTGGTGGTGGCTGTTAT+AGG + chr3_4:70919337-70919356 Msa0519000:intron 50.0%
CAGCACACAGAGGCTAAAAC+AGG - chr3_4:70919410-70919429 None:intergenic 50.0%
CTAAACACAGCAGCACACAG+AGG - chr3_4:70919420-70919439 None:intergenic 50.0%
! CTCTGTGTGCTGCTGTGTTT+AGG + chr3_4:70919418-70919437 Msa0519000:intron 50.0%
TGTTTCGGCCACCACATGAT+AGG + chr3_4:70919456-70919475 Msa0519000:CDS 50.0%
ACACCTCTCCTATCATGTGG+TGG - chr3_4:70919467-70919486 None:intergenic 50.0%
CCAACACCTCTCCTATCATG+TGG - chr3_4:70919470-70919489 None:intergenic 50.0%
! CCACATGATAGGAGAGGTGT+TGG + chr3_4:70919467-70919486 Msa0519000:CDS 50.0%
!! AGGAGAGGTGTTGGCAACTT+AGG + chr3_4:70919476-70919495 Msa0519000:CDS 50.0%
!! GGAGAGGTGTTGGCAACTTA+GGG + chr3_4:70919477-70919496 Msa0519000:CDS 50.0%
!! GAGAGGTGTTGGCAACTTAG+GGG + chr3_4:70919478-70919497 Msa0519000:CDS 50.0%
! GCGTTGTGTGTGGTGTTTTC+AGG + chr3_4:70919500-70919519 Msa0519000:CDS 50.0%
TTTGCGGTTCTGCATGGGTT+AGG + chr3_4:70919563-70919582 Msa0519000:intron 50.0%
GGGACAACAACCATTACACG+CGG - chr3_4:70919611-70919630 None:intergenic 50.0%
TATACCTGTTGAAGGCCGAG+AGG - chr3_4:70919973-70919992 None:intergenic 50.0%
GCTCATATGTCGTGTGCTCA+AGG + chr3_4:70920262-70920281 Msa0519000:three_prime_UTR 50.0%
GCCAGAGCAGAGAAGATGAG+AGG + chr3_4:70916541-70916560 Msa0519000:CDS 55.0%
CCCTCTCATCTTCTCTGCTC+TGG - chr3_4:70916545-70916564 None:intergenic 55.0%
GAGCAGAGAAGATGAGAGGG+AGG + chr3_4:70916545-70916564 Msa0519000:CDS 55.0%
GTGCCCGACACCAATTTACG+TGG - chr3_4:70918612-70918631 None:intergenic 55.0%
CTCCTCTCAAGGTGAGAGGA+AGG + chr3_4:70919143-70919162 Msa0519000:intron 55.0%
TGTTCGATTGGGGTGAGTGG+TGG + chr3_4:70919324-70919343 Msa0519000:intron 55.0%
!! CAACTTAGGGGCGTTGTGTG+TGG + chr3_4:70919490-70919509 Msa0519000:CDS 55.0%
!! GTGCCCGACACCGATTTACA+TGG - chr3_4:70919690-70919709 None:intergenic 55.0%
TCGATTGGGGTGAGTGGTGG+TGG + chr3_4:70919327-70919346 Msa0519000:intron 60.0%
CGGCCACCACATGATAGGAG+AGG + chr3_4:70919461-70919480 Msa0519000:CDS 60.0%
!! AGTTGCAGGGATGGTGGGCT+AGG - chr3_4:70920948-70920967 None:intergenic 60.0%
CGTTTACCCGTGCGACAGCA+CGG + chr3_4:70921456-70921475 Msa0519000:three_prime_UTR 60.0%
GTTTACCCGTGCGACAGCAC+GGG + chr3_4:70921457-70921476 Msa0519000:three_prime_UTR 60.0%
GGGTCCTCTCGGCCTTCAAC+AGG + chr3_4:70919966-70919985 Msa0519000:CDS 65.0%
TTGCGTCCCGTGCTGTCGCA+CGG - chr3_4:70921466-70921485 None:intergenic 65.0%
TGCGTCCCGTGCTGTCGCAC+GGG - chr3_4:70921465-70921484 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 70916384 70921490 70916384 ID=Msa0519000;Name=Msa0519000
chr3_4 mRNA 70916384 70921490 70916384 ID=Msa0519000-mRNA-1;Parent=Msa0519000;Name=Msa0519000-mRNA-1;_AED=0.39;_eAED=0.39;_QI=135|0.16|0.42|0.71|0.5|0.57|7|638|120
chr3_4 exon 70916384 70916603 70916384 ID=Msa0519000-mRNA-1:exon:19435;Parent=Msa0519000-mRNA-1
chr3_4 exon 70916751 70916767 70916751 ID=Msa0519000-mRNA-1:exon:19436;Parent=Msa0519000-mRNA-1
chr3_4 exon 70916856 70916877 70916856 ID=Msa0519000-mRNA-1:exon:19437;Parent=Msa0519000-mRNA-1
chr3_4 exon 70918190 70918281 70918190 ID=Msa0519000-mRNA-1:exon:19438;Parent=Msa0519000-mRNA-1
chr3_4 exon 70919440 70919535 70919440 ID=Msa0519000-mRNA-1:exon:19439;Parent=Msa0519000-mRNA-1
chr3_4 exon 70919953 70920283 70919953 ID=Msa0519000-mRNA-1:exon:19440;Parent=Msa0519000-mRNA-1
chr3_4 exon 70921133 70921490 70921133 ID=Msa0519000-mRNA-1:exon:19441;Parent=Msa0519000-mRNA-1
chr3_4 five_prime_UTR 70916384 70916518 70916384 ID=Msa0519000-mRNA-1:five_prime_utr;Parent=Msa0519000-mRNA-1
chr3_4 CDS 70916519 70916603 70916519 ID=Msa0519000-mRNA-1:cds;Parent=Msa0519000-mRNA-1
chr3_4 CDS 70916751 70916767 70916751 ID=Msa0519000-mRNA-1:cds;Parent=Msa0519000-mRNA-1
chr3_4 CDS 70916856 70916877 70916856 ID=Msa0519000-mRNA-1:cds;Parent=Msa0519000-mRNA-1
chr3_4 CDS 70918190 70918281 70918190 ID=Msa0519000-mRNA-1:cds;Parent=Msa0519000-mRNA-1
chr3_4 CDS 70919440 70919535 70919440 ID=Msa0519000-mRNA-1:cds;Parent=Msa0519000-mRNA-1
chr3_4 CDS 70919953 70920003 70919953 ID=Msa0519000-mRNA-1:cds;Parent=Msa0519000-mRNA-1
chr3_4 three_prime_UTR 70920004 70920283 70920004 ID=Msa0519000-mRNA-1:three_prime_utr;Parent=Msa0519000-mRNA-1
chr3_4 three_prime_UTR 70921133 70921490 70921133 ID=Msa0519000-mRNA-1:three_prime_utr;Parent=Msa0519000-mRNA-1
Gene Sequence

>Msa0519000

ATGATTGATGGTGTTTGTGGTAGCCAGAGCAGAGAAGATGAGAGGGAGGTTAGTGATCAGAGAGTAAATGTATGGAGGATATGGGTTTTGATTCCCCCATTGGTTGAAGAGGATTTTGGTCATGAAGATGGAGTACCACTATTGAATGCTCAAATGTATTTGGATATGGAGGACAAAGGGGAGATACCTGAATGGTTTCCTTCTCCAATTTTTCAGGCTATCTTTGTGTTTCTGTTTCGGCCACCACATGATAGGAGAGGTGTTGGCAACTTAGGGGCGTTGTGTGTGGTGTTTTCAGGTGTTCTTCAGCAGGACAAACTGTTTTGGGTCCTCTCGGCCTTCAACAGGTATACGAGTTCATAG

Protein sequence

>Msa0519000

MIDGVCGSQSREDEREVSDQRVNVWRIWVLIPPLVEEDFGHEDGVPLLNAQMYLDMEDKGEIPEWFPSPIFQAIFVFLFRPPHDRRGVGNLGALCVVFSGVLQQDKLFWVLSAFNRYTSS*