AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0259370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259370 MtrunA17_Chr2g0315721 98.276 58 1 0 1 58 1 58 4.67e-36 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0259370 AT1G10865.2 75.862 58 14 0 1 58 1 58 7.23e-25 91.7
Msa0259370 AT1G10865.1 74.576 59 15 0 1 59 1 59 9.78e-25 91.7

Find 50 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCCAAGAACTCTTCTT+TGG 0.266679 2_2:-56346143 None:intergenic
CTATTCCAAAGAAGAGTTCT+TGG 0.317922 2_2:+56346138 Msa0259370:CDS
ACCCAACCAGTGCAAATAAC+AGG 0.335033 2_2:-56346092 None:intergenic
TCTATTTGATTCAGGTTTGA+TGG 0.341425 2_2:-56346207 None:intergenic
CAGCTGAGTGTGTTGGACTT+AGG 0.350003 2_2:+56344432 Msa0259370:CDS
AGCTGAGTGTGTTGGACTTA+GGG 0.364782 2_2:+56344433 Msa0259370:CDS
ACCTGAATCAAATAGAAAAT+AGG 0.366103 2_2:+56346214 Msa0259370:CDS
GGCTAATCCTTTGCAAGACT+TGG 0.367609 2_2:-56344222 None:intergenic
CCCTGTTATTTGCACTGGTT+GGG 0.382075 2_2:+56346091 Msa0259370:CDS
ACCTATTTCAATTGCAAAAG+AGG 0.400990 2_2:+56344458 Msa0259370:CDS
ACCCTGTTATTTGCACTGGT+TGG 0.417274 2_2:+56346090 Msa0259370:CDS
AAGACTGGTAGGGTGATGTT+TGG 0.426348 2_2:-56345093 None:intergenic
ACACACTCAGCTGAAATTGA+TGG 0.436896 2_2:-56344422 None:intergenic
CAGTGAATCTGATTGTGTTA+AGG 0.440858 2_2:+56344265 Msa0259370:CDS
CTATTTGATTCAGGTTTGAT+GGG 0.442071 2_2:-56346206 None:intergenic
CTCATCCATTGTCCGCCATC+CGG 0.448103 2_2:+56345032 Msa0259370:CDS
CACGGCACCATACTCAGATA+TGG 0.467552 2_2:+56344984 Msa0259370:CDS
CTTGTTCATTCTGACATTTG+CGG 0.468275 2_2:+56346182 Msa0259370:CDS
ATTTGCACTGGTTGGGTGGT+TGG 0.469802 2_2:+56346098 Msa0259370:CDS
ATAGCAGCTGTTAGGAAGAC+TGG 0.476526 2_2:-56345108 None:intergenic
GATTACCCTGTTATTTGCAC+TGG 0.485889 2_2:+56346086 Msa0259370:CDS
AGGCTCATATAGCAGCTGTT+AGG 0.494124 2_2:-56345116 None:intergenic
CTGCTATATGAGCCTTCACA+TGG 0.497402 2_2:+56345124 Msa0259370:CDS
TTCACATTTAAGAGAGGTGA+AGG 0.505006 2_2:+56344183 None:intergenic
AGATATGGCGCCGCCACATG+TGG 0.510447 2_2:+56344999 Msa0259370:CDS
GGCGGCGCCATATCTGAGTA+TGG 0.511583 2_2:-56344991 None:intergenic
AGCTAAAAGCCCACATGTGG+CGG 0.512828 2_2:-56345009 None:intergenic
CAGCTGTTAGGAAGACTGGT+AGG 0.523589 2_2:-56345104 None:intergenic
TTTCAATTGCAAAAGAGGAC+AGG 0.525074 2_2:+56344463 Msa0259370:CDS
TTGAACAGTGGTGCCGATGC+CGG 0.531942 2_2:-56345051 None:intergenic
AGATCATACAAGGAGTGTGC+TGG 0.532397 2_2:+56344389 Msa0259370:CDS
GAGACACTTAACTAATTCCA+TGG 0.532404 2_2:-56344243 None:intergenic
TCAATTTCAGCTGAGTGTGT+TGG 0.539001 2_2:+56344425 Msa0259370:CDS
CATTGTCCGCCATCCGGCAT+CGG 0.545541 2_2:+56345038 Msa0259370:CDS
GATATGGCGCCGCCACATGT+GGG 0.551080 2_2:+56345000 Msa0259370:CDS
TGCTATATGAGCCTTCACAT+GGG 0.566267 2_2:+56345125 Msa0259370:CDS
TGTTATTTGCACTGGTTGGG+TGG 0.574059 2_2:+56346094 Msa0259370:CDS
TATAAATAATCACAGAGTCA+CGG 0.589305 2_2:+56344966 Msa0259370:intron
ACAAACTACAGTTTCTGTAT+CGG 0.591628 2_2:-56345150 None:intergenic
CTGTATCGGACCCCATGTGA+AGG 0.593355 2_2:-56345136 None:intergenic
GTCTTGCAAAGGATTAGCCA+TGG 0.600408 2_2:+56344226 Msa0259370:CDS
GGTTGATAATAGATCATACA+AGG 0.601750 2_2:+56344379 Msa0259370:intron
AGCTGTTAGGAAGACTGGTA+GGG 0.613082 2_2:-56345103 None:intergenic
ACAATGTCCAAGTCTTGCAA+AGG 0.613550 2_2:+56344215 Msa0259370:exon
CGATGCCGGATGGCGGACAA+TGG 0.614411 2_2:-56345037 None:intergenic
GTGGTGCCGATGCCGGATGG+CGG 0.621778 2_2:-56345044 None:intergenic
CCCAACCAGTGCAAATAACA+GGG 0.623872 2_2:-56346091 None:intergenic
ACAGTGGTGCCGATGCCGGA+TGG 0.624484 2_2:-56345047 None:intergenic
GAGAGCTAAAAGCCCACATG+TGG 0.649279 2_2:-56345012 None:intergenic
GCTATATGAGCCTTCACATG+GGG 0.653433 2_2:+56345126 Msa0259370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTATTAGTAAATTTTA+TGG - chr2_2:56345852-56345871 None:intergenic 10.0%
!!! TCATTTATTAGTAAATTTTA+TGG - chr2_2:56345852-56345871 None:intergenic 10.0%
!! TTATGTTTATGATTATGAAT+AGG + chr2_2:56344358-56344377 Msa0259370:intron 15.0%
!!! TAGATAATTAATTTGTTGAT+TGG - chr2_2:56344935-56344954 None:intergenic 15.0%
!! TTTGTAATATAGATACATTT+AGG + chr2_2:56345888-56345907 Msa0259370:intron 15.0%
!! TTGTAATATAGATACATTTA+GGG + chr2_2:56345889-56345908 Msa0259370:intron 15.0%
!! TTATGTTTATGATTATGAAT+AGG + chr2_2:56344358-56344377 Msa0259370:intron 15.0%
!!! TAGATAATTAATTTGTTGAT+TGG - chr2_2:56344935-56344954 None:intergenic 15.0%
!! TTTGTAATATAGATACATTT+AGG + chr2_2:56345888-56345907 Msa0259370:intron 15.0%
!! TTGTAATATAGATACATTTA+GGG + chr2_2:56345889-56345908 Msa0259370:intron 15.0%
!! TCTGTGATTATTTATAAAAC+TGG - chr2_2:56344962-56344981 None:intergenic 20.0%
!! CAAAATAATCTCTTTAATGT+TGG + chr2_2:56345504-56345523 Msa0259370:intron 20.0%
!!! TTTTACCCATTTGTAAATAA+TGG + chr2_2:56345956-56345975 Msa0259370:intron 20.0%
!! TTTACCCATTTGTAAATAAT+GGG + chr2_2:56345957-56345976 Msa0259370:intron 20.0%
!! TCTGTGATTATTTATAAAAC+TGG - chr2_2:56344962-56344981 None:intergenic 20.0%
!! CAAAATAATCTCTTTAATGT+TGG + chr2_2:56345504-56345523 Msa0259370:intron 20.0%
!!! TTTTACCCATTTGTAAATAA+TGG + chr2_2:56345956-56345975 Msa0259370:intron 20.0%
!! TTTACCCATTTGTAAATAAT+GGG + chr2_2:56345957-56345976 Msa0259370:intron 20.0%
! TATAAATAATCACAGAGTCA+CGG + chr2_2:56344966-56344985 Msa0259370:intron 25.0%
!! AAAATTTTCGTATTGAACAG+TGG - chr2_2:56345066-56345085 None:intergenic 25.0%
! CGAGAAACTATAAAAATTCA+TGG + chr2_2:56345196-56345215 Msa0259370:intron 25.0%
! TGTTCAAATACTCCTTTAAT+AGG - chr2_2:56345306-56345325 None:intergenic 25.0%
!!! ATTAAAGGAGTATTTGAACA+TGG + chr2_2:56345306-56345325 Msa0259370:intron 25.0%
!!! AAAGAGATTATTTTGCAACT+CGG - chr2_2:56345499-56345518 None:intergenic 25.0%
!! AAATGAGTAAACAACCATTT+TGG + chr2_2:56345680-56345699 Msa0259370:intron 25.0%
! AACTAACAAAAGACACATTT+GGG - chr2_2:56345762-56345781 None:intergenic 25.0%
! TAACTAACAAAAGACACATT+TGG - chr2_2:56345763-56345782 None:intergenic 25.0%
!!! TTTGTTAGTTATTTTGTCCT+CGG + chr2_2:56345772-56345791 Msa0259370:intron 25.0%
!! TGCTCAAATATGTTTTTCTT+TGG + chr2_2:56345816-56345835 Msa0259370:intron 25.0%
! TTACTAATAAATGAGACACT+TGG + chr2_2:56345858-56345877 Msa0259370:intron 25.0%
! TATAAATAATCACAGAGTCA+CGG + chr2_2:56344966-56344985 Msa0259370:intron 25.0%
!! AAAATTTTCGTATTGAACAG+TGG - chr2_2:56345066-56345085 None:intergenic 25.0%
! CGAGAAACTATAAAAATTCA+TGG + chr2_2:56345196-56345215 Msa0259370:intron 25.0%
! TGTTCAAATACTCCTTTAAT+AGG - chr2_2:56345306-56345325 None:intergenic 25.0%
!!! ATTAAAGGAGTATTTGAACA+TGG + chr2_2:56345306-56345325 Msa0259370:intron 25.0%
!!! AAAGAGATTATTTTGCAACT+CGG - chr2_2:56345499-56345518 None:intergenic 25.0%
!! AAATGAGTAAACAACCATTT+TGG + chr2_2:56345680-56345699 Msa0259370:intron 25.0%
! AACTAACAAAAGACACATTT+GGG - chr2_2:56345762-56345781 None:intergenic 25.0%
! TAACTAACAAAAGACACATT+TGG - chr2_2:56345763-56345782 None:intergenic 25.0%
!!! TTTGTTAGTTATTTTGTCCT+CGG + chr2_2:56345772-56345791 Msa0259370:intron 25.0%
!! TGCTCAAATATGTTTTTCTT+TGG + chr2_2:56345816-56345835 Msa0259370:intron 25.0%
! TTACTAATAAATGAGACACT+TGG + chr2_2:56345858-56345877 Msa0259370:intron 25.0%
!! GGTTGATAATAGATCATACA+AGG + chr2_2:56344379-56344398 Msa0259370:intron 30.0%
ACCTATTTCAATTGCAAAAG+AGG + chr2_2:56344458-56344477 Msa0259370:CDS 30.0%
! TCCTCTTTTGCAATTGAAAT+AGG - chr2_2:56344462-56344481 None:intergenic 30.0%
TGAAATGCAACAACTAACAA+GGG - chr2_2:56344495-56344514 None:intergenic 30.0%
!! GTTAGTTTGTTAGTTTGAGT+AGG + chr2_2:56344724-56344743 Msa0259370:intron 30.0%
GATAGAGAGGAAAATTTCTT+CGG + chr2_2:56344826-56344845 Msa0259370:intron 30.0%
TCATATTGATCAAGGAAAGA+TGG + chr2_2:56344851-56344870 Msa0259370:intron 30.0%
ACAAACTACAGTTTCTGTAT+CGG - chr2_2:56345153-56345172 None:intergenic 30.0%
TATAAAAATTCATGGCCGAT+GGG + chr2_2:56345204-56345223 Msa0259370:intron 30.0%
TTAAACGAAATTGTTCCCAT+CGG - chr2_2:56345222-56345241 None:intergenic 30.0%
TCAAATACTCCTTTAATAGG+AGG - chr2_2:56345303-56345322 None:intergenic 30.0%
ATTTGAACATGGTAGAAACT+AGG + chr2_2:56345317-56345336 Msa0259370:intron 30.0%
GAGCAAGTTTAAAGATTTGA+AGG + chr2_2:56345394-56345413 Msa0259370:intron 30.0%
AAGATTTGAAGGTGAAAATC+CGG + chr2_2:56345405-56345424 Msa0259370:intron 30.0%
TATCTATAGCTTGGAATATC+CGG - chr2_2:56345427-56345446 None:intergenic 30.0%
TGATTCTTCTATCTATAGCT+TGG - chr2_2:56345436-56345455 None:intergenic 30.0%
AGCTATAGATAGAAGAATCA+TGG + chr2_2:56345436-56345455 Msa0259370:intron 30.0%
!! AAGAGATTATTTTGCAACTC+GGG - chr2_2:56345498-56345517 None:intergenic 30.0%
TTTATCTATCATTCCGAAAG+AGG + chr2_2:56345580-56345599 Msa0259370:intron 30.0%
ACATATTGCTAGACATAAGA+AGG - chr2_2:56345606-56345625 None:intergenic 30.0%
! CAAATGGGTAAAAACCATTT+TGG - chr2_2:56345949-56345968 None:intergenic 30.0%
CACACCCATTATTTACAAAT+GGG - chr2_2:56345964-56345983 None:intergenic 30.0%
AACTTAAGCACATAAAGAGA+TGG + chr2_2:56346040-56346059 Msa0259370:intron 30.0%
! CTATTTGATTCAGGTTTGAT+GGG - chr2_2:56346209-56346228 None:intergenic 30.0%
! TCTATTTGATTCAGGTTTGA+TGG - chr2_2:56346210-56346229 None:intergenic 30.0%
!! GGTTGATAATAGATCATACA+AGG + chr2_2:56344379-56344398 Msa0259370:intron 30.0%
ACCTATTTCAATTGCAAAAG+AGG + chr2_2:56344458-56344477 Msa0259370:CDS 30.0%
! TCCTCTTTTGCAATTGAAAT+AGG - chr2_2:56344462-56344481 None:intergenic 30.0%
TGAAATGCAACAACTAACAA+GGG - chr2_2:56344495-56344514 None:intergenic 30.0%
!! GTTAGTTTGTTAGTTTGAGT+AGG + chr2_2:56344724-56344743 Msa0259370:intron 30.0%
GATAGAGAGGAAAATTTCTT+CGG + chr2_2:56344826-56344845 Msa0259370:intron 30.0%
TCATATTGATCAAGGAAAGA+TGG + chr2_2:56344851-56344870 Msa0259370:intron 30.0%
ACAAACTACAGTTTCTGTAT+CGG - chr2_2:56345153-56345172 None:intergenic 30.0%
TATAAAAATTCATGGCCGAT+GGG + chr2_2:56345204-56345223 Msa0259370:intron 30.0%
TTAAACGAAATTGTTCCCAT+CGG - chr2_2:56345222-56345241 None:intergenic 30.0%
TCAAATACTCCTTTAATAGG+AGG - chr2_2:56345303-56345322 None:intergenic 30.0%
ATTTGAACATGGTAGAAACT+AGG + chr2_2:56345317-56345336 Msa0259370:intron 30.0%
GAGCAAGTTTAAAGATTTGA+AGG + chr2_2:56345394-56345413 Msa0259370:intron 30.0%
AAGATTTGAAGGTGAAAATC+CGG + chr2_2:56345405-56345424 Msa0259370:intron 30.0%
TATCTATAGCTTGGAATATC+CGG - chr2_2:56345427-56345446 None:intergenic 30.0%
TGATTCTTCTATCTATAGCT+TGG - chr2_2:56345436-56345455 None:intergenic 30.0%
AGCTATAGATAGAAGAATCA+TGG + chr2_2:56345436-56345455 Msa0259370:intron 30.0%
!! AAGAGATTATTTTGCAACTC+GGG - chr2_2:56345498-56345517 None:intergenic 30.0%
TTTATCTATCATTCCGAAAG+AGG + chr2_2:56345580-56345599 Msa0259370:intron 30.0%
ACATATTGCTAGACATAAGA+AGG - chr2_2:56345606-56345625 None:intergenic 30.0%
! CAAATGGGTAAAAACCATTT+TGG - chr2_2:56345949-56345968 None:intergenic 30.0%
CACACCCATTATTTACAAAT+GGG - chr2_2:56345964-56345983 None:intergenic 30.0%
AACTTAAGCACATAAAGAGA+TGG + chr2_2:56346040-56346059 Msa0259370:intron 30.0%
! CTATTTGATTCAGGTTTGAT+GGG - chr2_2:56346209-56346228 None:intergenic 30.0%
! TCTATTTGATTCAGGTTTGA+TGG - chr2_2:56346210-56346229 None:intergenic 30.0%
GAGACACTTAACTAATTCCA+TGG - chr2_2:56344246-56344265 None:intergenic 35.0%
CAGTGAATCTGATTGTGTTA+AGG + chr2_2:56344265-56344284 Msa0259370:CDS 35.0%
TTTCAATTGCAAAAGAGGAC+AGG + chr2_2:56344463-56344482 Msa0259370:CDS 35.0%
CTGAAATGCAACAACTAACA+AGG - chr2_2:56344496-56344515 None:intergenic 35.0%
TAGGTTGTTAACCTCTTAAG+TGG + chr2_2:56344697-56344716 Msa0259370:intron 35.0%
AGGTTGTTAACCTCTTAAGT+GGG + chr2_2:56344698-56344717 Msa0259370:intron 35.0%
AACTAACTAACCCACTTAAG+AGG - chr2_2:56344711-56344730 None:intergenic 35.0%
CTTCGGATTCATATTGATCA+AGG + chr2_2:56344843-56344862 Msa0259370:intron 35.0%
CTATAAAAATTCATGGCCGA+TGG + chr2_2:56345203-56345222 Msa0259370:intron 35.0%
!! AGAGATTATTTTGCAACTCG+GGG - chr2_2:56345497-56345516 None:intergenic 35.0%
GTTTCAGCAAGATATGTGTA+AGG + chr2_2:56345557-56345576 Msa0259370:intron 35.0%
TACTCATTTGCCAACAGAAA+GGG - chr2_2:56345669-56345688 None:intergenic 35.0%
TTACTCATTTGCCAACAGAA+AGG - chr2_2:56345670-56345689 None:intergenic 35.0%
CCACACCCATTATTTACAAA+TGG - chr2_2:56345965-56345984 None:intergenic 35.0%
!! CCATTTGTAAATAATGGGTG+TGG + chr2_2:56345962-56345981 Msa0259370:intron 35.0%
CTATTCCAAAGAAGAGTTCT+TGG + chr2_2:56346138-56346157 Msa0259370:CDS 35.0%
CTTGTTCATTCTGACATTTG+CGG + chr2_2:56346182-56346201 Msa0259370:CDS 35.0%
GAGACACTTAACTAATTCCA+TGG - chr2_2:56344246-56344265 None:intergenic 35.0%
CAGTGAATCTGATTGTGTTA+AGG + chr2_2:56344265-56344284 Msa0259370:CDS 35.0%
TTTCAATTGCAAAAGAGGAC+AGG + chr2_2:56344463-56344482 Msa0259370:CDS 35.0%
CTGAAATGCAACAACTAACA+AGG - chr2_2:56344496-56344515 None:intergenic 35.0%
TAGGTTGTTAACCTCTTAAG+TGG + chr2_2:56344697-56344716 Msa0259370:intron 35.0%
AGGTTGTTAACCTCTTAAGT+GGG + chr2_2:56344698-56344717 Msa0259370:intron 35.0%
AACTAACTAACCCACTTAAG+AGG - chr2_2:56344711-56344730 None:intergenic 35.0%
CTTCGGATTCATATTGATCA+AGG + chr2_2:56344843-56344862 Msa0259370:intron 35.0%
CTATAAAAATTCATGGCCGA+TGG + chr2_2:56345203-56345222 Msa0259370:intron 35.0%
!! AGAGATTATTTTGCAACTCG+GGG - chr2_2:56345497-56345516 None:intergenic 35.0%
GTTTCAGCAAGATATGTGTA+AGG + chr2_2:56345557-56345576 Msa0259370:intron 35.0%
TACTCATTTGCCAACAGAAA+GGG - chr2_2:56345669-56345688 None:intergenic 35.0%
TTACTCATTTGCCAACAGAA+AGG - chr2_2:56345670-56345689 None:intergenic 35.0%
CCACACCCATTATTTACAAA+TGG - chr2_2:56345965-56345984 None:intergenic 35.0%
!! CCATTTGTAAATAATGGGTG+TGG + chr2_2:56345962-56345981 Msa0259370:intron 35.0%
CTATTCCAAAGAAGAGTTCT+TGG + chr2_2:56346138-56346157 Msa0259370:CDS 35.0%
CTTGTTCATTCTGACATTTG+CGG + chr2_2:56346182-56346201 Msa0259370:CDS 35.0%
ACAATGTCCAAGTCTTGCAA+AGG + chr2_2:56344215-56344234 Msa0259370:exon 40.0%
ACACACTCAGCTGAAATTGA+TGG - chr2_2:56344425-56344444 None:intergenic 40.0%
TCAATTTCAGCTGAGTGTGT+TGG + chr2_2:56344425-56344444 Msa0259370:CDS 40.0%
ATATGTGTCAGTATCGTGTC+TGG - chr2_2:56344557-56344576 None:intergenic 40.0%
GTAATCAGATGTGTCTGTGT+TGG + chr2_2:56344618-56344637 Msa0259370:intron 40.0%
TGCTATATGAGCCTTCACAT+GGG + chr2_2:56345125-56345144 Msa0259370:CDS 40.0%
TCGTTTAACCTGCAATTCCA+CGG + chr2_2:56345234-56345253 Msa0259370:intron 40.0%
GGAGAATCACCTCCTATTAA+AGG + chr2_2:56345291-56345310 Msa0259370:intron 40.0%
TCTTGCTGAAACACAACACT+CGG - chr2_2:56345549-56345568 None:intergenic 40.0%
AGACATAAGAAGGCCTCTTT+CGG - chr2_2:56345596-56345615 None:intergenic 40.0%
GAGAATCACAGGTGCAATAA+TGG - chr2_2:56345647-56345666 None:intergenic 40.0%
CACACATTCAGTGACCAAAA+TGG - chr2_2:56345697-56345716 None:intergenic 40.0%
CAATTGTGACACGACAGATA+TGG + chr2_2:56345993-56346012 Msa0259370:intron 40.0%
TATGGCCATTTCAGCATCAA+AGG + chr2_2:56346011-56346030 Msa0259370:intron 40.0%
TCAAGCCTTTGATGCTGAAA+TGG - chr2_2:56346019-56346038 None:intergenic 40.0%
! GATTACCCTGTTATTTGCAC+TGG + chr2_2:56346086-56346105 Msa0259370:CDS 40.0%
ACTCTCCAAGAACTCTTCTT+TGG - chr2_2:56346146-56346165 None:intergenic 40.0%
ACAATGTCCAAGTCTTGCAA+AGG + chr2_2:56344215-56344234 Msa0259370:exon 40.0%
ACACACTCAGCTGAAATTGA+TGG - chr2_2:56344425-56344444 None:intergenic 40.0%
TCAATTTCAGCTGAGTGTGT+TGG + chr2_2:56344425-56344444 Msa0259370:CDS 40.0%
ATATGTGTCAGTATCGTGTC+TGG - chr2_2:56344557-56344576 None:intergenic 40.0%
GTAATCAGATGTGTCTGTGT+TGG + chr2_2:56344618-56344637 Msa0259370:intron 40.0%
TGCTATATGAGCCTTCACAT+GGG + chr2_2:56345125-56345144 Msa0259370:CDS 40.0%
TCGTTTAACCTGCAATTCCA+CGG + chr2_2:56345234-56345253 Msa0259370:intron 40.0%
GGAGAATCACCTCCTATTAA+AGG + chr2_2:56345291-56345310 Msa0259370:intron 40.0%
TCTTGCTGAAACACAACACT+CGG - chr2_2:56345549-56345568 None:intergenic 40.0%
AGACATAAGAAGGCCTCTTT+CGG - chr2_2:56345596-56345615 None:intergenic 40.0%
GAGAATCACAGGTGCAATAA+TGG - chr2_2:56345647-56345666 None:intergenic 40.0%
CACACATTCAGTGACCAAAA+TGG - chr2_2:56345697-56345716 None:intergenic 40.0%
CAATTGTGACACGACAGATA+TGG + chr2_2:56345993-56346012 Msa0259370:intron 40.0%
TATGGCCATTTCAGCATCAA+AGG + chr2_2:56346011-56346030 Msa0259370:intron 40.0%
TCAAGCCTTTGATGCTGAAA+TGG - chr2_2:56346019-56346038 None:intergenic 40.0%
! GATTACCCTGTTATTTGCAC+TGG + chr2_2:56346086-56346105 Msa0259370:CDS 40.0%
ACTCTCCAAGAACTCTTCTT+TGG - chr2_2:56346146-56346165 None:intergenic 40.0%
GGCTAATCCTTTGCAAGACT+TGG - chr2_2:56344225-56344244 None:intergenic 45.0%
!! GTCTTGCAAAGGATTAGCCA+TGG + chr2_2:56344226-56344245 Msa0259370:CDS 45.0%
! AGATCATACAAGGAGTGTGC+TGG + chr2_2:56344389-56344408 Msa0259370:CDS 45.0%
AGCTGAGTGTGTTGGACTTA+GGG + chr2_2:56344433-56344452 Msa0259370:CDS 45.0%
TCAGATGTGTCTGTGTTGGA+TGG + chr2_2:56344622-56344641 Msa0259370:intron 45.0%
TGTTGGATGGTGACATGTGT+CGG + chr2_2:56344635-56344654 Msa0259370:intron 45.0%
ACACTGAGCATGCCTTCAAT+CGG + chr2_2:56344658-56344677 Msa0259370:intron 45.0%
! ATGCCTTCAATCGGAAGTGT+TGG + chr2_2:56344667-56344686 Msa0259370:intron 45.0%
TCACCAACACTTCCGATTGA+AGG - chr2_2:56344673-56344692 None:intergenic 45.0%
!! CGGAAGTGTTGGTGATAGAT+AGG + chr2_2:56344678-56344697 Msa0259370:intron 45.0%
AGCTTGAGAGCTTGATAGAG+AGG + chr2_2:56344813-56344832 Msa0259370:intron 45.0%
AAGACTGGTAGGGTGATGTT+TGG - chr2_2:56345096-56345115 None:intergenic 45.0%
AGCTGTTAGGAAGACTGGTA+GGG - chr2_2:56345106-56345125 None:intergenic 45.0%
ATAGCAGCTGTTAGGAAGAC+TGG - chr2_2:56345111-56345130 None:intergenic 45.0%
AGGCTCATATAGCAGCTGTT+AGG - chr2_2:56345119-56345138 None:intergenic 45.0%
CTGCTATATGAGCCTTCACA+TGG + chr2_2:56345124-56345143 Msa0259370:CDS 45.0%
GCTATATGAGCCTTCACATG+GGG + chr2_2:56345126-56345145 Msa0259370:CDS 45.0%
TCGATGATCACTAGACCAGT+AGG + chr2_2:56345258-56345277 Msa0259370:intron 45.0%
AGACCAGTAGGCAATGCTTA+TGG + chr2_2:56345270-56345289 Msa0259370:intron 45.0%
! TCTCCATAAGCATTGCCTAC+TGG - chr2_2:56345276-56345295 None:intergenic 45.0%
AGCCGTAGCAACTTAAGAAC+CGG + chr2_2:56345354-56345373 Msa0259370:intron 45.0%
! GACCGGTTCTTAAGTTGCTA+CGG - chr2_2:56345359-56345378 None:intergenic 45.0%
TAGCAACTTAAGAACCGGTC+AGG + chr2_2:56345359-56345378 Msa0259370:intron 45.0%
TCTCTTCGACAAATCCTGAC+CGG - chr2_2:56345376-56345395 None:intergenic 45.0%
TAATGTTGGTCAGCTTCAGC+AGG + chr2_2:56345518-56345537 Msa0259370:intron 45.0%
CAACAGAAAGGGAGAATCAC+AGG - chr2_2:56345658-56345677 None:intergenic 45.0%
CTGTGATTCTCCCTTTCTGT+TGG + chr2_2:56345656-56345675 Msa0259370:intron 45.0%
ACTAACTAAAGACACAGCCG+AGG - chr2_2:56345792-56345811 None:intergenic 45.0%
ACATCACCTCACACATTCAC+AGG + chr2_2:56345921-56345940 Msa0259370:intron 45.0%
CACATTCACAGGTGCCAAAA+TGG + chr2_2:56345932-56345951 Msa0259370:intron 45.0%
GCACATAAAGAGATGGTCTG+AGG + chr2_2:56346047-56346066 Msa0259370:intron 45.0%
AGAGATGGTCTGAGGATTAC+CGG + chr2_2:56346055-56346074 Msa0259370:intron 45.0%
! ACCCTGTTATTTGCACTGGT+TGG + chr2_2:56346090-56346109 Msa0259370:CDS 45.0%
CCCAACCAGTGCAAATAACA+GGG - chr2_2:56346094-56346113 None:intergenic 45.0%
!! CCCTGTTATTTGCACTGGTT+GGG + chr2_2:56346091-56346110 Msa0259370:CDS 45.0%
ACCCAACCAGTGCAAATAAC+AGG - chr2_2:56346095-56346114 None:intergenic 45.0%
!! TGTTATTTGCACTGGTTGGG+TGG + chr2_2:56346094-56346113 Msa0259370:CDS 45.0%
GGCTAATCCTTTGCAAGACT+TGG - chr2_2:56344225-56344244 None:intergenic 45.0%
!! GTCTTGCAAAGGATTAGCCA+TGG + chr2_2:56344226-56344245 Msa0259370:CDS 45.0%
! AGATCATACAAGGAGTGTGC+TGG + chr2_2:56344389-56344408 Msa0259370:CDS 45.0%
AGCTGAGTGTGTTGGACTTA+GGG + chr2_2:56344433-56344452 Msa0259370:CDS 45.0%
TCAGATGTGTCTGTGTTGGA+TGG + chr2_2:56344622-56344641 Msa0259370:intron 45.0%
TGTTGGATGGTGACATGTGT+CGG + chr2_2:56344635-56344654 Msa0259370:intron 45.0%
ACACTGAGCATGCCTTCAAT+CGG + chr2_2:56344658-56344677 Msa0259370:intron 45.0%
! ATGCCTTCAATCGGAAGTGT+TGG + chr2_2:56344667-56344686 Msa0259370:intron 45.0%
TCACCAACACTTCCGATTGA+AGG - chr2_2:56344673-56344692 None:intergenic 45.0%
!! CGGAAGTGTTGGTGATAGAT+AGG + chr2_2:56344678-56344697 Msa0259370:intron 45.0%
AGCTTGAGAGCTTGATAGAG+AGG + chr2_2:56344813-56344832 Msa0259370:intron 45.0%
AAGACTGGTAGGGTGATGTT+TGG - chr2_2:56345096-56345115 None:intergenic 45.0%
AGCTGTTAGGAAGACTGGTA+GGG - chr2_2:56345106-56345125 None:intergenic 45.0%
ATAGCAGCTGTTAGGAAGAC+TGG - chr2_2:56345111-56345130 None:intergenic 45.0%
AGGCTCATATAGCAGCTGTT+AGG - chr2_2:56345119-56345138 None:intergenic 45.0%
CTGCTATATGAGCCTTCACA+TGG + chr2_2:56345124-56345143 Msa0259370:CDS 45.0%
GCTATATGAGCCTTCACATG+GGG + chr2_2:56345126-56345145 Msa0259370:CDS 45.0%
TCGATGATCACTAGACCAGT+AGG + chr2_2:56345258-56345277 Msa0259370:intron 45.0%
AGACCAGTAGGCAATGCTTA+TGG + chr2_2:56345270-56345289 Msa0259370:intron 45.0%
! TCTCCATAAGCATTGCCTAC+TGG - chr2_2:56345276-56345295 None:intergenic 45.0%
AGCCGTAGCAACTTAAGAAC+CGG + chr2_2:56345354-56345373 Msa0259370:intron 45.0%
! GACCGGTTCTTAAGTTGCTA+CGG - chr2_2:56345359-56345378 None:intergenic 45.0%
TAGCAACTTAAGAACCGGTC+AGG + chr2_2:56345359-56345378 Msa0259370:intron 45.0%
TCTCTTCGACAAATCCTGAC+CGG - chr2_2:56345376-56345395 None:intergenic 45.0%
TAATGTTGGTCAGCTTCAGC+AGG + chr2_2:56345518-56345537 Msa0259370:intron 45.0%
CAACAGAAAGGGAGAATCAC+AGG - chr2_2:56345658-56345677 None:intergenic 45.0%
CTGTGATTCTCCCTTTCTGT+TGG + chr2_2:56345656-56345675 Msa0259370:intron 45.0%
ACTAACTAAAGACACAGCCG+AGG - chr2_2:56345792-56345811 None:intergenic 45.0%
ACATCACCTCACACATTCAC+AGG + chr2_2:56345921-56345940 Msa0259370:intron 45.0%
CACATTCACAGGTGCCAAAA+TGG + chr2_2:56345932-56345951 Msa0259370:intron 45.0%
GCACATAAAGAGATGGTCTG+AGG + chr2_2:56346047-56346066 Msa0259370:intron 45.0%
AGAGATGGTCTGAGGATTAC+CGG + chr2_2:56346055-56346074 Msa0259370:intron 45.0%
! ACCCTGTTATTTGCACTGGT+TGG + chr2_2:56346090-56346109 Msa0259370:CDS 45.0%
CCCAACCAGTGCAAATAACA+GGG - chr2_2:56346094-56346113 None:intergenic 45.0%
!! CCCTGTTATTTGCACTGGTT+GGG + chr2_2:56346091-56346110 Msa0259370:CDS 45.0%
ACCCAACCAGTGCAAATAAC+AGG - chr2_2:56346095-56346114 None:intergenic 45.0%
!! TGTTATTTGCACTGGTTGGG+TGG + chr2_2:56346094-56346113 Msa0259370:CDS 45.0%
CAGCTGAGTGTGTTGGACTT+AGG + chr2_2:56344432-56344451 Msa0259370:CDS 50.0%
GTCAGTATCGTGTCTGGTGT+CGG - chr2_2:56344551-56344570 None:intergenic 50.0%
CACGGCACCATACTCAGATA+TGG + chr2_2:56344984-56345003 Msa0259370:CDS 50.0%
AGCTAAAAGCCCACATGTGG+CGG - chr2_2:56345012-56345031 None:intergenic 50.0%
GAGAGCTAAAAGCCCACATG+TGG - chr2_2:56345015-56345034 None:intergenic 50.0%
CAGCTGTTAGGAAGACTGGT+AGG - chr2_2:56345107-56345126 None:intergenic 50.0%
TCATCGAACCGTGGAATTGC+AGG - chr2_2:56345245-56345264 None:intergenic 50.0%
GTCTAGTGATCATCGAACCG+TGG - chr2_2:56345254-56345273 None:intergenic 50.0%
GTTGCTACGGCTGAAAGAGA+CGG - chr2_2:56345346-56345365 None:intergenic 50.0%
TTGGCACCTGTGAATGTGTG+AGG - chr2_2:56345930-56345949 None:intergenic 50.0%
ACAGGGTAATCCTTGAGCAC+CGG - chr2_2:56346077-56346096 None:intergenic 50.0%
!! ATTTGCACTGGTTGGGTGGT+TGG + chr2_2:56346098-56346117 Msa0259370:CDS 50.0%
CAGCTGAGTGTGTTGGACTT+AGG + chr2_2:56344432-56344451 Msa0259370:CDS 50.0%
GTCAGTATCGTGTCTGGTGT+CGG - chr2_2:56344551-56344570 None:intergenic 50.0%
CACGGCACCATACTCAGATA+TGG + chr2_2:56344984-56345003 Msa0259370:CDS 50.0%
AGCTAAAAGCCCACATGTGG+CGG - chr2_2:56345012-56345031 None:intergenic 50.0%
GAGAGCTAAAAGCCCACATG+TGG - chr2_2:56345015-56345034 None:intergenic 50.0%
CAGCTGTTAGGAAGACTGGT+AGG - chr2_2:56345107-56345126 None:intergenic 50.0%
TCATCGAACCGTGGAATTGC+AGG - chr2_2:56345245-56345264 None:intergenic 50.0%
GTCTAGTGATCATCGAACCG+TGG - chr2_2:56345254-56345273 None:intergenic 50.0%
GTTGCTACGGCTGAAAGAGA+CGG - chr2_2:56345346-56345365 None:intergenic 50.0%
TTGGCACCTGTGAATGTGTG+AGG - chr2_2:56345930-56345949 None:intergenic 50.0%
ACAGGGTAATCCTTGAGCAC+CGG - chr2_2:56346077-56346096 None:intergenic 50.0%
!! ATTTGCACTGGTTGGGTGGT+TGG + chr2_2:56346098-56346117 Msa0259370:CDS 50.0%
CTCATCCATTGTCCGCCATC+CGG + chr2_2:56345032-56345051 Msa0259370:CDS 55.0%
!! TTGAACAGTGGTGCCGATGC+CGG - chr2_2:56345054-56345073 None:intergenic 55.0%
CTGTATCGGACCCCATGTGA+AGG - chr2_2:56345139-56345158 None:intergenic 55.0%
TGTTGGTCAGCTTCAGCAGG+AGG + chr2_2:56345521-56345540 Msa0259370:intron 55.0%
GTTGGTCAGCTTCAGCAGGA+GGG + chr2_2:56345522-56345541 Msa0259370:intron 55.0%
CTGAGGATTACCGGTGCTCA+AGG + chr2_2:56346064-56346083 Msa0259370:intron 55.0%
CTCATCCATTGTCCGCCATC+CGG + chr2_2:56345032-56345051 Msa0259370:CDS 55.0%
!! TTGAACAGTGGTGCCGATGC+CGG - chr2_2:56345054-56345073 None:intergenic 55.0%
CTGTATCGGACCCCATGTGA+AGG - chr2_2:56345139-56345158 None:intergenic 55.0%
TGTTGGTCAGCTTCAGCAGG+AGG + chr2_2:56345521-56345540 Msa0259370:intron 55.0%
GTTGGTCAGCTTCAGCAGGA+GGG + chr2_2:56345522-56345541 Msa0259370:intron 55.0%
CTGAGGATTACCGGTGCTCA+AGG + chr2_2:56346064-56346083 Msa0259370:intron 55.0%
GGCGGCGCCATATCTGAGTA+TGG - chr2_2:56344994-56345013 None:intergenic 60.0%
AGATATGGCGCCGCCACATG+TGG + chr2_2:56344999-56345018 Msa0259370:CDS 60.0%
GATATGGCGCCGCCACATGT+GGG + chr2_2:56345000-56345019 Msa0259370:CDS 60.0%
CATTGTCCGCCATCCGGCAT+CGG + chr2_2:56345038-56345057 Msa0259370:CDS 60.0%
GGCGGCGCCATATCTGAGTA+TGG - chr2_2:56344994-56345013 None:intergenic 60.0%
AGATATGGCGCCGCCACATG+TGG + chr2_2:56344999-56345018 Msa0259370:CDS 60.0%
GATATGGCGCCGCCACATGT+GGG + chr2_2:56345000-56345019 Msa0259370:CDS 60.0%
CATTGTCCGCCATCCGGCAT+CGG + chr2_2:56345038-56345057 Msa0259370:CDS 60.0%
!! CGATGCCGGATGGCGGACAA+TGG - chr2_2:56345040-56345059 None:intergenic 65.0%
!! ACAGTGGTGCCGATGCCGGA+TGG - chr2_2:56345050-56345069 None:intergenic 65.0%
!! CGATGCCGGATGGCGGACAA+TGG - chr2_2:56345040-56345059 None:intergenic 65.0%
!! ACAGTGGTGCCGATGCCGGA+TGG - chr2_2:56345050-56345069 None:intergenic 65.0%
!! GTGGTGCCGATGCCGGATGG+CGG - chr2_2:56345047-56345066 None:intergenic 70.0%
!! GTGGTGCCGATGCCGGATGG+CGG - chr2_2:56345047-56345066 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 56344188 56346235 56344188 ID=Msa0259370;Name=Msa0259370
chr2_2 mRNA 56344188 56346235 56344188 ID=Msa0259370-mRNA-1;Parent=Msa0259370;Name=Msa0259370-mRNA-1;_AED=0.54;_eAED=0.54;_QI=30|0.33|0.25|0.5|1|1|4|0|176
chr2_2 exon 56344188 56344286 56344188 ID=Msa0259370-mRNA-1:exon:17040;Parent=Msa0259370-mRNA-1
chr2_2 exon 56344380 56344496 56344380 ID=Msa0259370-mRNA-1:exon:17041;Parent=Msa0259370-mRNA-1
chr2_2 exon 56344981 56345175 56344981 ID=Msa0259370-mRNA-1:exon:17042;Parent=Msa0259370-mRNA-1
chr2_2 exon 56346086 56346235 56346086 ID=Msa0259370-mRNA-1:exon:17043;Parent=Msa0259370-mRNA-1
chr2_2 five_prime_UTR 56344188 56344217 56344188 ID=Msa0259370-mRNA-1:five_prime_utr;Parent=Msa0259370-mRNA-1
chr2_2 CDS 56344218 56344286 56344218 ID=Msa0259370-mRNA-1:cds;Parent=Msa0259370-mRNA-1
chr2_2 CDS 56344380 56344496 56344380 ID=Msa0259370-mRNA-1:cds;Parent=Msa0259370-mRNA-1
chr2_2 CDS 56344981 56345175 56344981 ID=Msa0259370-mRNA-1:cds;Parent=Msa0259370-mRNA-1
chr2_2 CDS 56346086 56346235 56346086 ID=Msa0259370-mRNA-1:cds;Parent=Msa0259370-mRNA-1
Gene Sequence

>Msa0259370

ATGTCCAAGTCTTGCAAAGGATTAGCCATGGAATTAGTTAAGTGTCTCAGTGAATCTGATTGTGTTAAGGTTGATAATAGATCATACAAGGAGTGTGCTGGAGAGAAGACTCCATCAATTTCAGCTGAGTGTGTTGGACTTAGGGAAACCTATTTCAATTGCAAAAGAGGACAGGCAAGTTCCCTTAGTCACGGCACCATACTCAGATATGGCGCCGCCACATGTGGGCTTTTAGCTCTCATCCATTGTCCGCCATCCGGCATCGGCACCACTGTTCAATACGAAAATTTTAGTTTTTCCAAACATCACCCTACCAGTCTTCCTAACAGCTGCTATATGAGCCTTCACATGGGGTCCGATACAGAAACTGTAGTTTGTTCTGATTACCCTGTTATTTGCACTGGTTGGGTGGTTGGAAAGCAGCACAGTGAAGCTATTCCAAAGAAGAGTTCTTGGAGAGTTTCTCAAAGACTTGATCTTGTTCATTCTGACATTTGCGGACCCATCAAACCTGAATCAAATAGAAAATAG

Protein sequence

>Msa0259370

MSKSCKGLAMELVKCLSESDCVKVDNRSYKECAGEKTPSISAECVGLRETYFNCKRGQASSLSHGTILRYGAATCGLLALIHCPPSGIGTTVQYENFSFSKHHPTSLPNSCYMSLHMGSDTETVVCSDYPVICTGWVVGKQHSEAIPKKSSWRVSQRLDLVHSDICGPIKPESNRK*