Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064070 | XP_003623288.1 | 96.721 | 122 | 4 | 0 | 1 | 122 | 1 | 122 | 2.72e-74 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064070 | G7KS85 | 96.721 | 122 | 4 | 0 | 1 | 122 | 1 | 122 | 1.30e-74 | 239 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1064070 | Msa1152220 | 0.808274 | 3.357207e-50 | -8.615850e-47 |
| Msa1064070 | Msa1170240 | 0.813888 | 2.037175e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064070 | MtrunA17_Chr7g0242211 | 96.721 | 122 | 4 | 0 | 1 | 122 | 1 | 122 | 2.50e-78 | 239 |
| Msa1064070 | MtrunA17_Chr3g0113271 | 56.780 | 118 | 44 | 4 | 5 | 119 | 32 | 145 | 2.72e-31 | 116 |
| Msa1064070 | MtrunA17_Chr5g0436961 | 47.009 | 117 | 57 | 3 | 6 | 119 | 38 | 152 | 3.87e-22 | 90.1 |
| Msa1064070 | MtrunA17_Chr3g0122841 | 39.806 | 103 | 41 | 3 | 1 | 96 | 30 | 118 | 1.10e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1064070 | AT2G40070.1 | 50.420 | 119 | 55 | 3 | 2 | 119 | 27 | 142 | 2.28e-29 | 111 |
| Msa1064070 | AT3G09000.1 | 43.443 | 122 | 63 | 3 | 1 | 119 | 1 | 119 | 2.49e-22 | 91.3 |
| Msa1064070 | AT2G40070.2 | 47.619 | 105 | 51 | 3 | 16 | 119 | 1 | 102 | 1.00e-21 | 89.4 |
| Msa1064070 | AT2G38160.3 | 40.984 | 122 | 61 | 3 | 1 | 122 | 5 | 115 | 4.39e-15 | 70.1 |
| Msa1064070 | AT2G38160.6 | 40.984 | 122 | 61 | 3 | 1 | 122 | 5 | 115 | 4.39e-15 | 70.1 |
| Msa1064070 | AT2G38160.2 | 40.678 | 118 | 59 | 3 | 1 | 118 | 5 | 111 | 3.56e-14 | 67.4 |
| Msa1064070 | AT2G38160.1 | 40.678 | 118 | 59 | 3 | 1 | 118 | 5 | 111 | 3.56e-14 | 67.4 |
| Msa1064070 | AT1G27850.1 | 38.144 | 97 | 47 | 3 | 1 | 96 | 30 | 114 | 7.03e-14 | 67.0 |
Find 31 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAACCACAGTCTTCTT+TGG | 0.262105 | 7_2:+56497672 | None:intergenic |
| GAATGATGATTGATGAATAT+TGG | 0.313653 | 7_2:+56498302 | None:intergenic |
| TATGTGAAACTTTGTCTTGT+TGG | 0.414526 | 7_2:+56498357 | None:intergenic |
| ATCACATTTCAACTCATTGA+AGG | 0.424742 | 7_2:-56498161 | Msa1064070:intron |
| TCAACCACAGTCTTCTTTGG+TGG | 0.427459 | 7_2:+56497675 | None:intergenic |
| ACCCTTAGCTTTAAAGCAGT+TGG | 0.447708 | 7_2:+56496377 | None:intergenic |
| GAACTTGATTTGTCCAACTT+AGG | 0.455464 | 7_2:-56497830 | Msa1064070:intron |
| AGAGAAGGTAATGGTGATGA+AGG | 0.465683 | 7_2:-56497945 | Msa1064070:exon |
| AAACTCTATGATTTCAAAGA+TGG | 0.474261 | 7_2:-56497709 | Msa1064070:CDS |
| GTCCAACTGCTTTAAAGCTA+AGG | 0.475310 | 7_2:-56496379 | Msa1064070:CDS |
| TGTGTTTCCTTGTCTAAAGT+AGG | 0.481105 | 7_2:+56496440 | None:intergenic |
| CTTTGTTCCTTGAGATGAGG+AGG | 0.496371 | 7_2:-56497904 | Msa1064070:CDS |
| AAATGTGATGAAATAAATGA+TGG | 0.505033 | 7_2:+56498175 | None:intergenic |
| TTGCTTTGTTCCTTGAGATG+AGG | 0.511091 | 7_2:-56497907 | Msa1064070:CDS |
| GTCTCCGTTTCACTCTTCAA+TGG | 0.512150 | 7_2:+56496413 | None:intergenic |
| TGGCATTCAAATGTTTGAAA+CGG | 0.512396 | 7_2:+56498377 | None:intergenic |
| ATGATAAGTCTGATTATGAA+TGG | 0.516982 | 7_2:-56497632 | Msa1064070:intron |
| GTGCTAGATAGAGAAGGTAA+TGG | 0.517431 | 7_2:-56497954 | Msa1064070:exon |
| TCTCTCTCCTCCTCATCTCA+AGG | 0.534681 | 7_2:+56497897 | None:intergenic |
| TCCAACTGCTTTAAAGCTAA+GGG | 0.543133 | 7_2:-56496378 | Msa1064070:CDS |
| TATGCTAGTGTTGGATAGAG+AGG | 0.583161 | 7_2:+56498233 | None:intergenic |
| AATGCCATTGAAGAGTGAAA+CGG | 0.586692 | 7_2:-56496417 | Msa1064070:CDS |
| ATGAAGAACTATGCTAGTGT+TGG | 0.590964 | 7_2:+56498224 | None:intergenic |
| GGATAGAGAGGTGAATAACA+AGG | 0.607076 | 7_2:+56498245 | None:intergenic |
| TAGAAGGTGCTAGATAGAGA+AGG | 0.622452 | 7_2:-56497960 | Msa1064070:five_prime_UTR |
| TTTACTTCTTCAAAACTCTG+AGG | 0.627906 | 7_2:-56497852 | Msa1064070:CDS |
| AATGTGATGAAATAAATGAT+GGG | 0.635056 | 7_2:+56498176 | None:intergenic |
| AGTTCCACCAAAGAAGACTG+TGG | 0.671508 | 7_2:-56497679 | Msa1064070:CDS |
| ATGTGATGAAATAAATGATG+GGG | 0.684317 | 7_2:+56498177 | None:intergenic |
| TGATGAATATTGGTTTGACA+AGG | 0.705101 | 7_2:+56498312 | None:intergenic |
| TGAATAACAAGGTAGCTGAG+TGG | 0.742956 | 7_2:+56498256 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAATATATATTGATC+TGG | - | chr7_2:56498007-56498026 | Msa1064070:intron | 10.0% |
| !! | AATATTAATATATATTGATC+TGG | - | chr7_2:56498007-56498026 | Msa1064070:intron | 10.0% |
| !! | GATAAATAATTGATGTTAAA+TGG | - | chr7_2:56497809-56497828 | Msa1064070:intron | 15.0% |
| !! | AATATTTATGGCATTATATA+TGG | - | chr7_2:56498075-56498094 | Msa1064070:intron | 15.0% |
| !! | GATAAATAATTGATGTTAAA+TGG | - | chr7_2:56497809-56497828 | Msa1064070:intron | 15.0% |
| !! | AATATTTATGGCATTATATA+TGG | - | chr7_2:56498075-56498094 | Msa1064070:intron | 15.0% |
| !! | AATGTGATGAAATAAATGAT+GGG | + | chr7_2:56496600-56496619 | None:intergenic | 20.0% |
| !! | AAATGTGATGAAATAAATGA+TGG | + | chr7_2:56496601-56496620 | None:intergenic | 20.0% |
| !! | AAAATTGTGACTTTAGTAAT+TGG | - | chr7_2:56496730-56496749 | Msa1064070:intron | 20.0% |
| !! | TGTTATAGTTAATGATGTTA+TGG | - | chr7_2:56497006-56497025 | Msa1064070:intron | 20.0% |
| !! | TATAGATCTTGTAAATCAAT+TGG | - | chr7_2:56497204-56497223 | Msa1064070:intron | 20.0% |
| !! | TGAAAACAGAAAATCAAAAT+AGG | + | chr7_2:56497281-56497300 | None:intergenic | 20.0% |
| !! | AAGTGAAAACAAAAGTAAAA+AGG | - | chr7_2:56497477-56497496 | Msa1064070:intron | 20.0% |
| !! | AGTGAAAACAAAAGTAAAAA+GGG | - | chr7_2:56497478-56497497 | Msa1064070:intron | 20.0% |
| !! | TTTCTATGTATAATTTGATG+TGG | - | chr7_2:56497549-56497568 | Msa1064070:intron | 20.0% |
| !!! | TTTTCAGCTATTTCAAATTT+GGG | + | chr7_2:56497698-56497717 | None:intergenic | 20.0% |
| !!! | CAAAGTTGATTATGAATTTA+TGG | - | chr7_2:56497875-56497894 | Msa1064070:CDS | 20.0% |
| !! | AGAAACAAGTTCAATATTTA+TGG | - | chr7_2:56498063-56498082 | Msa1064070:intron | 20.0% |
| !! | CATTTATGTATTATGCAATT+TGG | + | chr7_2:56498155-56498174 | None:intergenic | 20.0% |
| !! | AATGTGATGAAATAAATGAT+GGG | + | chr7_2:56496600-56496619 | None:intergenic | 20.0% |
| !! | AAATGTGATGAAATAAATGA+TGG | + | chr7_2:56496601-56496620 | None:intergenic | 20.0% |
| !! | AAAATTGTGACTTTAGTAAT+TGG | - | chr7_2:56496730-56496749 | Msa1064070:intron | 20.0% |
| !! | TGTTATAGTTAATGATGTTA+TGG | - | chr7_2:56497006-56497025 | Msa1064070:intron | 20.0% |
| !! | TATAGATCTTGTAAATCAAT+TGG | - | chr7_2:56497204-56497223 | Msa1064070:intron | 20.0% |
| !! | TGAAAACAGAAAATCAAAAT+AGG | + | chr7_2:56497281-56497300 | None:intergenic | 20.0% |
| !! | AAGTGAAAACAAAAGTAAAA+AGG | - | chr7_2:56497477-56497496 | Msa1064070:intron | 20.0% |
| !! | AGTGAAAACAAAAGTAAAAA+GGG | - | chr7_2:56497478-56497497 | Msa1064070:intron | 20.0% |
| !! | TTTCTATGTATAATTTGATG+TGG | - | chr7_2:56497549-56497568 | Msa1064070:intron | 20.0% |
| !!! | TTTTCAGCTATTTCAAATTT+GGG | + | chr7_2:56497698-56497717 | None:intergenic | 20.0% |
| !!! | CAAAGTTGATTATGAATTTA+TGG | - | chr7_2:56497875-56497894 | Msa1064070:CDS | 20.0% |
| !! | AGAAACAAGTTCAATATTTA+TGG | - | chr7_2:56498063-56498082 | Msa1064070:intron | 20.0% |
| !! | CATTTATGTATTATGCAATT+TGG | + | chr7_2:56498155-56498174 | None:intergenic | 20.0% |
| ! | GAATGATGATTGATGAATAT+TGG | + | chr7_2:56496474-56496493 | None:intergenic | 25.0% |
| !! | GTTTTTGTTCGATAATTTTG+AGG | + | chr7_2:56496496-56496515 | None:intergenic | 25.0% |
| ! | ATGTGATGAAATAAATGATG+GGG | + | chr7_2:56496599-56496618 | None:intergenic | 25.0% |
| !!! | GTTCTTTGTTTTTGCTTAAA+GGG | - | chr7_2:56496752-56496771 | Msa1064070:intron | 25.0% |
| !!! | TTTGTTTTGTTGATCATAGA+AGG | - | chr7_2:56496797-56496816 | Msa1064070:intron | 25.0% |
| ! | AAACAAAAAGTTACCTAAGT+TGG | + | chr7_2:56496959-56496978 | None:intergenic | 25.0% |
| !! | AATCATAGAGTTTTCATGAT+TGG | + | chr7_2:56497057-56497076 | None:intergenic | 25.0% |
| ! | AAACTCTATGATTTCAAAGA+TGG | - | chr7_2:56497064-56497083 | Msa1064070:intron | 25.0% |
| ! | ATGATAAGTCTGATTATGAA+TGG | - | chr7_2:56497141-56497160 | Msa1064070:intron | 25.0% |
| !! | CTGATTATGAATGGTAATTT+TGG | - | chr7_2:56497150-56497169 | Msa1064070:intron | 25.0% |
| ! | CAATAAATAGAAGAATGTGT+TGG | + | chr7_2:56497333-56497352 | None:intergenic | 25.0% |
| ! | AAATTTCCACTAAATCATGA+AGG | - | chr7_2:56497364-56497383 | Msa1064070:intron | 25.0% |
| ! | AGAAATTCTTATTGTCTAGT+TGG | - | chr7_2:56497573-56497592 | Msa1064070:intron | 25.0% |
| !!! | CTTTTCAGCTATTTCAAATT+TGG | + | chr7_2:56497699-56497718 | None:intergenic | 25.0% |
| !!! | GTTTTGATAATGACAATTTG+AGG | - | chr7_2:56497728-56497747 | Msa1064070:intron | 25.0% |
| !!! | TTGGTTATTTTTAGCATGAA+AGG | + | chr7_2:56498136-56498155 | None:intergenic | 25.0% |
| ! | GAATGATGATTGATGAATAT+TGG | + | chr7_2:56496474-56496493 | None:intergenic | 25.0% |
| !! | GTTTTTGTTCGATAATTTTG+AGG | + | chr7_2:56496496-56496515 | None:intergenic | 25.0% |
| ! | ATGTGATGAAATAAATGATG+GGG | + | chr7_2:56496599-56496618 | None:intergenic | 25.0% |
| !!! | GTTCTTTGTTTTTGCTTAAA+GGG | - | chr7_2:56496752-56496771 | Msa1064070:intron | 25.0% |
| !!! | TTTGTTTTGTTGATCATAGA+AGG | - | chr7_2:56496797-56496816 | Msa1064070:intron | 25.0% |
| ! | AAACAAAAAGTTACCTAAGT+TGG | + | chr7_2:56496959-56496978 | None:intergenic | 25.0% |
| !! | AATCATAGAGTTTTCATGAT+TGG | + | chr7_2:56497057-56497076 | None:intergenic | 25.0% |
| ! | AAACTCTATGATTTCAAAGA+TGG | - | chr7_2:56497064-56497083 | Msa1064070:intron | 25.0% |
| ! | ATGATAAGTCTGATTATGAA+TGG | - | chr7_2:56497141-56497160 | Msa1064070:intron | 25.0% |
| !! | CTGATTATGAATGGTAATTT+TGG | - | chr7_2:56497150-56497169 | Msa1064070:intron | 25.0% |
| ! | CAATAAATAGAAGAATGTGT+TGG | + | chr7_2:56497333-56497352 | None:intergenic | 25.0% |
| ! | AAATTTCCACTAAATCATGA+AGG | - | chr7_2:56497364-56497383 | Msa1064070:intron | 25.0% |
| ! | AGAAATTCTTATTGTCTAGT+TGG | - | chr7_2:56497573-56497592 | Msa1064070:intron | 25.0% |
| !!! | CTTTTCAGCTATTTCAAATT+TGG | + | chr7_2:56497699-56497718 | None:intergenic | 25.0% |
| !!! | GTTTTGATAATGACAATTTG+AGG | - | chr7_2:56497728-56497747 | Msa1064070:intron | 25.0% |
| !!! | TTGGTTATTTTTAGCATGAA+AGG | + | chr7_2:56498136-56498155 | None:intergenic | 25.0% |
| TGGCATTCAAATGTTTGAAA+CGG | + | chr7_2:56496399-56496418 | None:intergenic | 30.0% | |
| TATGTGAAACTTTGTCTTGT+TGG | + | chr7_2:56496419-56496438 | None:intergenic | 30.0% | |
| !! | TGATGAATATTGGTTTGACA+AGG | + | chr7_2:56496464-56496483 | None:intergenic | 30.0% |
| ATCACATTTCAACTCATTGA+AGG | - | chr7_2:56496612-56496631 | Msa1064070:intron | 30.0% | |
| TGAAGCAAGATTGTTCAAAA+GGG | + | chr7_2:56496671-56496690 | None:intergenic | 30.0% | |
| ATGAAGCAAGATTGTTCAAA+AGG | + | chr7_2:56496672-56496691 | None:intergenic | 30.0% | |
| ! | TTTTGAACAATCTTGCTTCA+TGG | - | chr7_2:56496671-56496690 | Msa1064070:intron | 30.0% |
| !!! | GGTTCTTTGTTTTTGCTTAA+AGG | - | chr7_2:56496751-56496770 | Msa1064070:intron | 30.0% |
| !!! | CAGAGTTTTGAAGAAGTAAA+AGG | + | chr7_2:56496921-56496940 | None:intergenic | 30.0% |
| TTTACTTCTTCAAAACTCTG+AGG | - | chr7_2:56496921-56496940 | Msa1064070:intron | 30.0% | |
| TGAAATTTATGGGACCTATA+AGG | - | chr7_2:56497394-56497413 | Msa1064070:intron | 30.0% | |
| ACATACTCTCTAATCCTTAT+AGG | + | chr7_2:56497411-56497430 | None:intergenic | 30.0% | |
| ! | ACATTGTGTTTTCACAAACT+AGG | + | chr7_2:56497440-56497459 | None:intergenic | 30.0% |
| AACGTCATTCAAATTGCAAA+AGG | - | chr7_2:56497620-56497639 | Msa1064070:intron | 30.0% | |
| GTTTGATTGTTGTATTTGTG+CGG | - | chr7_2:56497671-56497690 | Msa1064070:CDS | 30.0% | |
| TAATGAATGAAGACAAGATC+AGG | + | chr7_2:56497784-56497803 | None:intergenic | 30.0% | |
| ! | TTGTCTAAAGTAGGAAAAAG+CGG | + | chr7_2:56498327-56498346 | None:intergenic | 30.0% |
| TGGCATTCAAATGTTTGAAA+CGG | + | chr7_2:56496399-56496418 | None:intergenic | 30.0% | |
| TATGTGAAACTTTGTCTTGT+TGG | + | chr7_2:56496419-56496438 | None:intergenic | 30.0% | |
| !! | TGATGAATATTGGTTTGACA+AGG | + | chr7_2:56496464-56496483 | None:intergenic | 30.0% |
| ATCACATTTCAACTCATTGA+AGG | - | chr7_2:56496612-56496631 | Msa1064070:intron | 30.0% | |
| TGAAGCAAGATTGTTCAAAA+GGG | + | chr7_2:56496671-56496690 | None:intergenic | 30.0% | |
| ATGAAGCAAGATTGTTCAAA+AGG | + | chr7_2:56496672-56496691 | None:intergenic | 30.0% | |
| ! | TTTTGAACAATCTTGCTTCA+TGG | - | chr7_2:56496671-56496690 | Msa1064070:intron | 30.0% |
| !!! | GGTTCTTTGTTTTTGCTTAA+AGG | - | chr7_2:56496751-56496770 | Msa1064070:intron | 30.0% |
| !!! | CAGAGTTTTGAAGAAGTAAA+AGG | + | chr7_2:56496921-56496940 | None:intergenic | 30.0% |
| TTTACTTCTTCAAAACTCTG+AGG | - | chr7_2:56496921-56496940 | Msa1064070:intron | 30.0% | |
| TGAAATTTATGGGACCTATA+AGG | - | chr7_2:56497394-56497413 | Msa1064070:intron | 30.0% | |
| ACATACTCTCTAATCCTTAT+AGG | + | chr7_2:56497411-56497430 | None:intergenic | 30.0% | |
| ! | ACATTGTGTTTTCACAAACT+AGG | + | chr7_2:56497440-56497459 | None:intergenic | 30.0% |
| AACGTCATTCAAATTGCAAA+AGG | - | chr7_2:56497620-56497639 | Msa1064070:intron | 30.0% | |
| GTTTGATTGTTGTATTTGTG+CGG | - | chr7_2:56497671-56497690 | Msa1064070:CDS | 30.0% | |
| TAATGAATGAAGACAAGATC+AGG | + | chr7_2:56497784-56497803 | None:intergenic | 30.0% | |
| ! | TTGTCTAAAGTAGGAAAAAG+CGG | + | chr7_2:56498327-56498346 | None:intergenic | 30.0% |
| ATGAAGAACTATGCTAGTGT+TGG | + | chr7_2:56496552-56496571 | None:intergenic | 35.0% | |
| !! | GAACTTGATTTGTCCAACTT+AGG | - | chr7_2:56496943-56496962 | Msa1064070:intron | 35.0% |
| AGGTCCCATAAATTTCATGT+GGG | + | chr7_2:56497391-56497410 | None:intergenic | 35.0% | |
| TAGGTCCCATAAATTTCATG+TGG | + | chr7_2:56497392-56497411 | None:intergenic | 35.0% | |
| AGACAAGATCAGGAACATAA+AGG | + | chr7_2:56497774-56497793 | None:intergenic | 35.0% | |
| ! | GACAAGAGTTTTCTGTTATC+AGG | - | chr7_2:56498280-56498299 | Msa1064070:five_prime_UTR | 35.0% |
| !! | GCTTTTTCCTACTTTAGACA+AGG | - | chr7_2:56498326-56498345 | Msa1064070:five_prime_UTR | 35.0% |
| ! | TGTGTTTCCTTGTCTAAAGT+AGG | + | chr7_2:56498336-56498355 | None:intergenic | 35.0% |
| AATGCCATTGAAGAGTGAAA+CGG | - | chr7_2:56498356-56498375 | Msa1064070:five_prime_UTR | 35.0% | |
| !! | TCCAACTGCTTTAAAGCTAA+GGG | - | chr7_2:56498395-56498414 | Msa1064070:five_prime_UTR | 35.0% |
| ATGAAGAACTATGCTAGTGT+TGG | + | chr7_2:56496552-56496571 | None:intergenic | 35.0% | |
| !! | GAACTTGATTTGTCCAACTT+AGG | - | chr7_2:56496943-56496962 | Msa1064070:intron | 35.0% |
| AGGTCCCATAAATTTCATGT+GGG | + | chr7_2:56497391-56497410 | None:intergenic | 35.0% | |
| TAGGTCCCATAAATTTCATG+TGG | + | chr7_2:56497392-56497411 | None:intergenic | 35.0% | |
| AGACAAGATCAGGAACATAA+AGG | + | chr7_2:56497774-56497793 | None:intergenic | 35.0% | |
| ! | GACAAGAGTTTTCTGTTATC+AGG | - | chr7_2:56498280-56498299 | Msa1064070:five_prime_UTR | 35.0% |
| !! | GCTTTTTCCTACTTTAGACA+AGG | - | chr7_2:56498326-56498345 | Msa1064070:five_prime_UTR | 35.0% |
| ! | TGTGTTTCCTTGTCTAAAGT+AGG | + | chr7_2:56498336-56498355 | None:intergenic | 35.0% |
| AATGCCATTGAAGAGTGAAA+CGG | - | chr7_2:56498356-56498375 | Msa1064070:five_prime_UTR | 35.0% | |
| !! | TCCAACTGCTTTAAAGCTAA+GGG | - | chr7_2:56498395-56498414 | Msa1064070:five_prime_UTR | 35.0% |
| TGAATAACAAGGTAGCTGAG+TGG | + | chr7_2:56496520-56496539 | None:intergenic | 40.0% | |
| GGATAGAGAGGTGAATAACA+AGG | + | chr7_2:56496531-56496550 | None:intergenic | 40.0% | |
| ! | TATGCTAGTGTTGGATAGAG+AGG | + | chr7_2:56496543-56496562 | None:intergenic | 40.0% |
| !! | TAGAAGGTGCTAGATAGAGA+AGG | - | chr7_2:56496813-56496832 | Msa1064070:intron | 40.0% |
| GTGCTAGATAGAGAAGGTAA+TGG | - | chr7_2:56496819-56496838 | Msa1064070:intron | 40.0% | |
| ! | AGAGAAGGTAATGGTGATGA+AGG | - | chr7_2:56496828-56496847 | Msa1064070:intron | 40.0% |
| ! | TTGCTTTGTTCCTTGAGATG+AGG | - | chr7_2:56496866-56496885 | Msa1064070:intron | 40.0% |
| TCTTCAACCACAGTCTTCTT+TGG | + | chr7_2:56497104-56497123 | None:intergenic | 40.0% | |
| AAGGCCCCACATGAAATTTA+TGG | - | chr7_2:56497383-56497402 | Msa1064070:intron | 40.0% | |
| AGGCCCCACATGAAATTTAT+GGG | - | chr7_2:56497384-56497403 | Msa1064070:intron | 40.0% | |
| GGTCCCATAAATTTCATGTG+GGG | + | chr7_2:56497390-56497409 | None:intergenic | 40.0% | |
| ! | CCAAAGCTTAAGAGCATGTT+TGG | + | chr7_2:56497519-56497538 | None:intergenic | 40.0% |
| CCAAACATGCTCTTAAGCTT+TGG | - | chr7_2:56497516-56497535 | Msa1064070:intron | 40.0% | |
| !! | TGCTCTTAAGCTTTGGAATG+TGG | - | chr7_2:56497523-56497542 | Msa1064070:intron | 40.0% |
| AAGATCAGGAACATAAAGGC+TGG | + | chr7_2:56497770-56497789 | None:intergenic | 40.0% | |
| GATTAAGTGCAAACTTTCCG+CGG | - | chr7_2:56498033-56498052 | Msa1064070:intron | 40.0% | |
| GAAAACTCTTGTCAGTGTGA+AGG | + | chr7_2:56498273-56498292 | None:intergenic | 40.0% | |
| !! | GTCCAACTGCTTTAAAGCTA+AGG | - | chr7_2:56498394-56498413 | Msa1064070:five_prime_UTR | 40.0% |
| !! | ACCCTTAGCTTTAAAGCAGT+TGG | + | chr7_2:56498399-56498418 | None:intergenic | 40.0% |
| TGAATAACAAGGTAGCTGAG+TGG | + | chr7_2:56496520-56496539 | None:intergenic | 40.0% | |
| GGATAGAGAGGTGAATAACA+AGG | + | chr7_2:56496531-56496550 | None:intergenic | 40.0% | |
| ! | TATGCTAGTGTTGGATAGAG+AGG | + | chr7_2:56496543-56496562 | None:intergenic | 40.0% |
| !! | TAGAAGGTGCTAGATAGAGA+AGG | - | chr7_2:56496813-56496832 | Msa1064070:intron | 40.0% |
| GTGCTAGATAGAGAAGGTAA+TGG | - | chr7_2:56496819-56496838 | Msa1064070:intron | 40.0% | |
| ! | AGAGAAGGTAATGGTGATGA+AGG | - | chr7_2:56496828-56496847 | Msa1064070:intron | 40.0% |
| ! | TTGCTTTGTTCCTTGAGATG+AGG | - | chr7_2:56496866-56496885 | Msa1064070:intron | 40.0% |
| TCTTCAACCACAGTCTTCTT+TGG | + | chr7_2:56497104-56497123 | None:intergenic | 40.0% | |
| AAGGCCCCACATGAAATTTA+TGG | - | chr7_2:56497383-56497402 | Msa1064070:intron | 40.0% | |
| AGGCCCCACATGAAATTTAT+GGG | - | chr7_2:56497384-56497403 | Msa1064070:intron | 40.0% | |
| GGTCCCATAAATTTCATGTG+GGG | + | chr7_2:56497390-56497409 | None:intergenic | 40.0% | |
| ! | CCAAAGCTTAAGAGCATGTT+TGG | + | chr7_2:56497519-56497538 | None:intergenic | 40.0% |
| CCAAACATGCTCTTAAGCTT+TGG | - | chr7_2:56497516-56497535 | Msa1064070:intron | 40.0% | |
| !! | TGCTCTTAAGCTTTGGAATG+TGG | - | chr7_2:56497523-56497542 | Msa1064070:intron | 40.0% |
| AAGATCAGGAACATAAAGGC+TGG | + | chr7_2:56497770-56497789 | None:intergenic | 40.0% | |
| GATTAAGTGCAAACTTTCCG+CGG | - | chr7_2:56498033-56498052 | Msa1064070:intron | 40.0% | |
| GAAAACTCTTGTCAGTGTGA+AGG | + | chr7_2:56498273-56498292 | None:intergenic | 40.0% | |
| !! | GTCCAACTGCTTTAAAGCTA+AGG | - | chr7_2:56498394-56498413 | Msa1064070:five_prime_UTR | 40.0% |
| !! | ACCCTTAGCTTTAAAGCAGT+TGG | + | chr7_2:56498399-56498418 | None:intergenic | 40.0% |
| CTTTGTTCCTTGAGATGAGG+AGG | - | chr7_2:56496869-56496888 | Msa1064070:intron | 45.0% | |
| AGTTCCACCAAAGAAGACTG+TGG | - | chr7_2:56497094-56497113 | Msa1064070:intron | 45.0% | |
| TCAACCACAGTCTTCTTTGG+TGG | + | chr7_2:56497101-56497120 | None:intergenic | 45.0% | |
| AGGAACATAAAGGCTGGATG+TGG | + | chr7_2:56497764-56497783 | None:intergenic | 45.0% | |
| !! | ACTTGTTTCTGATTCCTCCG+CGG | + | chr7_2:56498053-56498072 | None:intergenic | 45.0% |
| GTAGGAAAAAGCGGTGTATC+AGG | + | chr7_2:56498318-56498337 | None:intergenic | 45.0% | |
| GTCTCCGTTTCACTCTTCAA+TGG | + | chr7_2:56498363-56498382 | None:intergenic | 45.0% | |
| CTTTGTTCCTTGAGATGAGG+AGG | - | chr7_2:56496869-56496888 | Msa1064070:intron | 45.0% | |
| AGTTCCACCAAAGAAGACTG+TGG | - | chr7_2:56497094-56497113 | Msa1064070:intron | 45.0% | |
| TCAACCACAGTCTTCTTTGG+TGG | + | chr7_2:56497101-56497120 | None:intergenic | 45.0% | |
| AGGAACATAAAGGCTGGATG+TGG | + | chr7_2:56497764-56497783 | None:intergenic | 45.0% | |
| !! | ACTTGTTTCTGATTCCTCCG+CGG | + | chr7_2:56498053-56498072 | None:intergenic | 45.0% |
| GTAGGAAAAAGCGGTGTATC+AGG | + | chr7_2:56498318-56498337 | None:intergenic | 45.0% | |
| GTCTCCGTTTCACTCTTCAA+TGG | + | chr7_2:56498363-56498382 | None:intergenic | 45.0% | |
| !! | ATCAATATATATTAATATTA+AGG | + | chr7_2:56498006-56498025 | None:intergenic | 5.0% |
| !! | ATCAATATATATTAATATTA+AGG | + | chr7_2:56498006-56498025 | None:intergenic | 5.0% |
| TCTCTCTCCTCCTCATCTCA+AGG | + | chr7_2:56496879-56496898 | None:intergenic | 50.0% | |
| GTGGGGCCTTCATGATTTAG+TGG | + | chr7_2:56497373-56497392 | None:intergenic | 50.0% | |
| ! | GGTGCTGAGTGCTTTGTCAA+AGG | - | chr7_2:56497896-56497915 | Msa1064070:CDS | 50.0% |
| TAAGTGCAAACTTTCCGCGG+AGG | - | chr7_2:56498036-56498055 | Msa1064070:intron | 50.0% | |
| GGAAAAAGCGGTGTATCAGG+TGG | + | chr7_2:56498315-56498334 | None:intergenic | 50.0% | |
| TCTCTCTCCTCCTCATCTCA+AGG | + | chr7_2:56496879-56496898 | None:intergenic | 50.0% | |
| GTGGGGCCTTCATGATTTAG+TGG | + | chr7_2:56497373-56497392 | None:intergenic | 50.0% | |
| ! | GGTGCTGAGTGCTTTGTCAA+AGG | - | chr7_2:56497896-56497915 | Msa1064070:CDS | 50.0% |
| TAAGTGCAAACTTTCCGCGG+AGG | - | chr7_2:56498036-56498055 | Msa1064070:intron | 50.0% | |
| GGAAAAAGCGGTGTATCAGG+TGG | + | chr7_2:56498315-56498334 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 56496364 | 56498431 | 56496364 | ID=Msa1064070;Name=Msa1064070 |
| chr7_2 | mRNA | 56496364 | 56498431 | 56496364 | ID=Msa1064070-mRNA-1;Parent=Msa1064070;Name=Msa1064070-mRNA-1;_AED=0.17;_eAED=0.17;_QI=292|1|0.75|1|0.66|0.5|4|0|122 |
| chr7_2 | exon | 56496364 | 56496493 | 56496364 | ID=Msa1064070-mRNA-1:exon:10672;Parent=Msa1064070-mRNA-1 |
| chr7_2 | exon | 56497633 | 56497744 | 56497633 | ID=Msa1064070-mRNA-1:exon:10671;Parent=Msa1064070-mRNA-1 |
| chr7_2 | exon | 56497831 | 56497979 | 56497831 | ID=Msa1064070-mRNA-1:exon:10670;Parent=Msa1064070-mRNA-1 |
| chr7_2 | exon | 56498162 | 56498431 | 56498162 | ID=Msa1064070-mRNA-1:exon:10669;Parent=Msa1064070-mRNA-1 |
| chr7_2 | five_prime_UTR | 56498162 | 56498431 | 56498162 | ID=Msa1064070-mRNA-1:five_prime_utr;Parent=Msa1064070-mRNA-1 |
| chr7_2 | five_prime_UTR | 56497958 | 56497979 | 56497958 | ID=Msa1064070-mRNA-1:five_prime_utr;Parent=Msa1064070-mRNA-1 |
| chr7_2 | CDS | 56497831 | 56497957 | 56497831 | ID=Msa1064070-mRNA-1:cds;Parent=Msa1064070-mRNA-1 |
| chr7_2 | CDS | 56497633 | 56497744 | 56497633 | ID=Msa1064070-mRNA-1:cds;Parent=Msa1064070-mRNA-1 |
| chr7_2 | CDS | 56496364 | 56496493 | 56496364 | ID=Msa1064070-mRNA-1:cds;Parent=Msa1064070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
