AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1067050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067050 MtrunA17_Chr7g0242951 97.133 558 14 1 2 557 1 558 0.0 1100
Msa1067050 MtrunA17_Chr2g0333221 54.286 70 32 0 24 93 66 135 4.36e-17 84.3
Msa1067050 MtrunA17_Chr3g0123861 56.061 66 29 0 28 93 82 147 4.71e-17 84.0
Msa1067050 MtrunA17_Chr4g0040501 45.631 103 45 4 27 118 3 105 1.10e-16 81.6
Msa1067050 MtrunA17_Chr2g0282741 45.918 98 47 3 27 118 3 100 1.76e-16 80.9
Msa1067050 MtrunA17_Chr6g0478651 47.619 84 36 1 28 111 68 143 1.02e-15 80.1
Msa1067050 MtrunA17_Chr2g0324921 28.839 267 159 10 27 279 3 252 4.13e-15 76.6
Msa1067050 MtrunA17_Chr3g0138471 34.177 158 89 4 27 178 3 151 8.38e-15 75.9
Msa1067050 MtrunA17_Chr1g0206121 41.860 86 50 0 4 89 11 96 1.05e-14 75.1
Msa1067050 MtrunA17_Chr7g0269841 54.545 66 29 1 30 94 28 93 1.93e-14 74.7
Msa1067050 MtrunA17_Chr4g0006391 48.571 70 34 1 27 94 3 72 2.50e-14 74.3
Msa1067050 MtrunA17_Chr2g0301881 41.176 85 49 1 20 103 91 175 2.51e-14 76.3
Msa1067050 MtrunA17_Chr2g0328581 54.098 61 28 0 29 89 76 136 3.95e-14 71.6
Msa1067050 MtrunA17_Chr2g0295831 53.226 62 29 0 28 89 110 171 5.14e-14 71.6
Msa1067050 MtrunA17_Chr2g0282761 49.275 69 33 1 27 93 3 71 1.79e-13 72.0
Msa1067050 MtrunA17_Chr1g0209551 48.684 76 31 2 28 102 16 84 5.66e-13 70.9
Msa1067050 MtrunA17_Chr7g0263971 52.941 68 30 1 24 89 365 432 7.41e-13 70.9
Msa1067050 MtrunA17_Chr1g0173931 53.125 64 29 1 30 92 40 103 8.53e-13 69.3
Msa1067050 MtrunA17_Chr2g0295821 50.000 62 31 0 28 89 104 165 9.44e-13 70.1
Msa1067050 MtrunA17_Chr6g0460411 42.500 80 39 2 27 100 1 79 2.06e-12 67.0
Msa1067050 MtrunA17_Chr2g0307061 43.939 66 37 0 30 95 112 177 2.39e-12 68.6
Msa1067050 MtrunA17_Chr6g0460461 42.500 80 39 2 27 100 1 79 2.45e-12 66.6
Msa1067050 MtrunA17_Chr7g0258061 53.125 64 29 1 30 92 24 87 2.46e-12 67.8
Msa1067050 MtrunA17_Chr2g0295361 44.578 83 44 1 10 90 19 101 4.74e-12 66.6
Msa1067050 MtrunA17_Chr5g0426951 52.459 61 28 1 30 89 85 145 5.48e-12 68.2
Msa1067050 MtrunA17_Chr3g0087741 48.529 68 34 1 28 94 89 156 6.02e-12 67.8
Msa1067050 MtrunA17_Chr8g0334811 42.683 82 44 1 30 111 16 94 6.47e-12 67.8
Msa1067050 MtrunA17_Chr5g0427221 41.333 75 43 1 19 92 39 113 7.98e-12 63.2
Msa1067050 MtrunA17_Chr6g0460381 44.928 69 32 2 27 89 2 70 9.20e-12 64.3
Msa1067050 MtrunA17_Chr4g0021141 44.928 69 37 1 25 92 19 87 1.80e-11 62.0
Msa1067050 MtrunA17_Chr3g0091361 43.662 71 38 1 26 94 3 73 3.31e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067050 AT3G08970.1 55.826 575 232 6 2 557 1 572 0.0 603
Msa1067050 AT3G08970.2 55.826 575 232 6 2 557 1 572 0.0 603
Msa1067050 AT5G25530.2 40.984 122 70 1 27 146 3 124 5.16e-19 89.0
Msa1067050 AT4G39960.1 53.571 84 38 1 28 111 85 167 2.94e-18 87.8
Msa1067050 AT4G39960.2 53.571 84 38 1 28 111 85 167 2.94e-18 87.8
Msa1067050 AT2G22360.1 50.000 88 39 2 18 103 79 163 6.19e-18 87.0
Msa1067050 AT1G80030.4 57.143 70 30 0 24 93 71 140 1.85e-17 85.9
Msa1067050 AT1G80030.2 57.143 70 30 0 24 93 71 140 2.12e-17 85.5
Msa1067050 AT1G80030.3 57.143 70 30 0 24 93 71 140 2.12e-17 85.5
Msa1067050 AT1G80030.1 57.143 70 30 0 24 93 71 140 2.12e-17 85.5
Msa1067050 AT2G20560.1 48.000 100 44 4 27 118 3 102 3.70e-17 83.6
Msa1067050 AT5G25530.1 38.462 130 70 2 27 146 3 132 1.43e-16 81.6
Msa1067050 AT3G62600.1 46.939 98 43 3 1 94 1 93 3.73e-16 80.5
Msa1067050 AT4G28480.2 53.333 75 31 2 27 97 3 77 5.66e-16 79.0
Msa1067050 AT5G01390.3 52.857 70 31 1 27 94 3 72 7.80e-16 77.8
Msa1067050 AT5G01390.4 52.055 73 33 1 27 97 3 75 8.15e-16 77.4
Msa1067050 AT1G79940.4 37.037 108 61 2 3 103 68 175 8.48e-16 80.9
Msa1067050 AT4G28480.1 53.333 75 31 2 27 97 3 77 9.51e-16 79.3
Msa1067050 AT1G79940.2 37.037 108 61 2 3 103 68 175 1.11e-15 80.9
Msa1067050 AT1G79940.3 37.037 108 61 2 3 103 68 175 1.11e-15 80.9
Msa1067050 AT1G79940.1 37.037 108 61 2 3 103 68 175 1.11e-15 80.9
Msa1067050 AT5G01390.2 52.857 70 31 1 27 94 3 72 1.83e-15 77.4
Msa1067050 AT3G17830.1 44.828 87 40 1 24 110 59 137 2.64e-15 79.3
Msa1067050 AT3G08910.1 39.130 138 73 4 27 156 3 137 2.65e-15 77.8
Msa1067050 AT5G01390.1 52.857 70 31 1 27 94 3 72 3.17e-15 77.4
Msa1067050 AT1G10350.1 29.078 141 78 4 27 165 3 123 2.73e-13 72.0
Msa1067050 AT4G21180.1 34.906 106 62 2 5 103 70 175 3.57e-13 72.8
Msa1067050 AT4G21180.2 38.824 85 51 1 20 103 11 95 9.22e-13 71.2
Msa1067050 AT1G68370.1 48.684 76 31 2 28 102 17 85 9.34e-13 70.9
Msa1067050 AT3G12170.1 54.688 64 28 1 30 92 13 76 9.66e-13 68.9
Msa1067050 AT5G05750.1 34.109 129 70 3 28 144 114 239 1.14e-12 69.3
Msa1067050 AT5G06910.1 49.315 73 34 2 30 99 31 103 1.30e-12 68.9
Msa1067050 AT3G47940.1 43.662 71 37 1 27 94 3 73 1.30e-12 69.7
Msa1067050 AT3G12170.2 54.688 64 28 1 30 92 49 112 1.54e-12 68.9
Msa1067050 AT1G59725.1 43.662 71 37 1 27 94 3 73 1.64e-12 69.3
Msa1067050 AT5G59610.2 48.333 60 31 0 29 88 74 133 2.91e-12 67.4
Msa1067050 AT2G41000.2 33.333 93 56 1 27 113 2 94 3.53e-12 66.2
Msa1067050 AT1G59980.2 39.241 79 47 1 21 98 16 94 4.17e-12 68.2
Msa1067050 AT5G59610.1 48.333 60 31 0 29 88 74 133 4.70e-12 67.0
Msa1067050 AT5G59610.4 48.333 60 31 0 29 88 74 133 4.70e-12 67.0
Msa1067050 AT5G59610.3 48.333 60 31 0 29 88 74 133 4.79e-12 67.4
Msa1067050 AT5G59610.5 48.333 60 31 0 29 88 74 133 4.79e-12 67.4
Msa1067050 AT5G49060.2 43.243 74 42 0 19 92 90 163 5.01e-12 68.2
Msa1067050 AT5G49060.1 43.243 74 42 0 19 92 90 163 5.01e-12 68.2
Msa1067050 AT1G59980.1 39.241 79 47 1 21 98 16 94 7.16e-12 68.2
Msa1067050 AT5G03160.1 50.000 68 32 1 24 89 366 433 9.21e-12 67.8
Msa1067050 AT3G57340.1 38.095 84 51 1 28 110 113 196 1.37e-11 66.6
Msa1067050 AT3G57340.2 38.095 84 51 1 28 110 113 196 1.37e-11 66.6
Msa1067050 AT2G35720.1 47.436 78 37 1 30 103 17 94 1.60e-11 67.4
Msa1067050 AT2G41000.1 33.333 93 56 1 27 113 2 94 2.57e-11 63.2
Msa1067050 AT5G16650.1 46.970 66 34 1 28 92 11 76 3.37e-11 61.2
Msa1067050 AT5G16650.2 46.970 66 34 1 28 92 11 76 4.31e-11 62.0

Find 154 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCAGCTTGTTCTTTCT+TGG 0.136383 7_2:+61255249 None:intergenic
TTCTTATGTGTTTCCCTAAA+TGG 0.152263 7_2:+61254755 None:intergenic
CTTGTAGATATTTGAATTTA+TGG 0.169499 7_2:+61256289 None:intergenic
ATAGAGCATTAAGGTATATT+TGG 0.196698 7_2:-61254720 Msa1067050:exon
ATTTATGGCCTTAAAACTTT+TGG 0.220110 7_2:+61256304 None:intergenic
CAACACTTTGAGTCCATTAT+AGG 0.240068 7_2:-61256200 Msa1067050:CDS
TAAGCGGAGATATACCATTT+AGG 0.240306 7_2:-61254769 Msa1067050:CDS
GATTGAAGAGTATTAATTAT+AGG 0.247090 7_2:-61254536 Msa1067050:three_prime_UTR
AGGAAGAATTATGATTTATA+TGG 0.254952 7_2:-61256584 Msa1067050:CDS
AAAAGAACACTCCTGTAATT+TGG 0.262674 7_2:-61255791 Msa1067050:CDS
CCCTTAGCCTTGTTCTTGTC+AGG 0.263130 7_2:+61257013 None:intergenic
AACACATTCAGTTGCTTTCT+CGG 0.272186 7_2:-61255219 Msa1067050:CDS
TCTGGTGATTCGAATTCTTT+TGG 0.278096 7_2:-61256419 Msa1067050:CDS
GGGAAATTCACTGTATTTAC+AGG 0.278143 7_2:-61254836 Msa1067050:CDS
AAGCGGAGATATACCATTTA+GGG 0.291674 7_2:-61254768 Msa1067050:CDS
AACACTTTGAGTCCATTATA+GGG 0.321085 7_2:-61256199 Msa1067050:CDS
AGAACTCCAGTATGCGTAAT+TGG 0.327008 7_2:-61255169 Msa1067050:CDS
CTAAATGCATTTGACAAAAC+AGG 0.333414 7_2:-61254905 Msa1067050:CDS
TTATCTGATCATCAGATAAT+TGG 0.335644 7_2:-61254482 Msa1067050:three_prime_UTR
CTTGTACGGGTCGATTGTTT+TGG 0.353222 7_2:+61257770 None:intergenic
TTTGGTTTGGATGATCTTCT+TGG 0.353735 7_2:-61256395 Msa1067050:CDS
GCTGGTCATCCGGGAGGTTA+TGG 0.370056 7_2:-61256533 Msa1067050:CDS
GTCATGAAATGATATGAAAT+AGG 0.371194 7_2:+61254406 None:intergenic
CTAAGAACACGCCAAATTAC+AGG 0.376368 7_2:+61255780 None:intergenic
ACCAGCAACCTCCCCTATAA+TGG 0.376935 7_2:+61256187 None:intergenic
GATGCACTTCCAGCTATTGT+AGG 0.379433 7_2:-61255406 Msa1067050:CDS
AGGTCTCAATCATCTCAATC+TGG 0.381249 7_2:-61256341 Msa1067050:CDS
ATCATCAGATAATTGGTAAT+AGG 0.388626 7_2:-61254475 Msa1067050:three_prime_UTR
CCTTGCTTTGGAAGATCTAA+AGG 0.391551 7_2:+61255144 None:intergenic
TTACCCCATTGTTGTTCCCC+TGG 0.394375 7_2:+61256485 None:intergenic
TTTCCCTTTCCGAGGTTTGT+AGG 0.394549 7_2:+61254853 None:intergenic
GTAATTTGGCGTGTTCTTAG+TGG 0.398833 7_2:-61255777 Msa1067050:CDS
TGTACTCAAATAGAGCATTA+AGG 0.401998 7_2:-61254729 Msa1067050:exon
CTAGAGCTGCCGCTTCCATT+TGG 0.402135 7_2:+61254977 None:intergenic
AACTGAGAACGGTGTATTAA+CGG 0.403170 7_2:+61257896 None:intergenic
AGAGCCGCCGCCAAAGGAAA+AGG 0.403748 7_2:+61256439 None:intergenic
TCAAACTTTGAGGCTCTTTG+TGG 0.404129 7_2:-61255196 Msa1067050:CDS
TGTATCATATGTACTCTTGT+TGG 0.405045 7_2:+61254647 None:intergenic
TGGATTTGAAGCTGGTCATC+CGG 0.406744 7_2:-61256543 Msa1067050:CDS
TACATTGCAAGGAGCTTTGA+AGG 0.409813 7_2:-61256165 Msa1067050:intron
CAAATGGAAGCGGCAGCTCT+AGG 0.421742 7_2:-61254976 Msa1067050:CDS
ATCTAAGAGACCATAGGAAA+TGG 0.425174 7_2:+61254949 None:intergenic
GCTTTCTCGGTCAAACTTTG+AGG 0.426568 7_2:-61255206 Msa1067050:CDS
CAGACCAGGGGAACAACAAT+GGG 0.426872 7_2:-61256489 Msa1067050:CDS
CAAACTTTGAGGCTCTTTGT+GGG 0.430001 7_2:-61255195 Msa1067050:CDS
TTCTTACAAGGAAAATGAAA+AGG 0.436187 7_2:-61255970 Msa1067050:CDS
AAGGCACCAATTACGCATAC+TGG 0.438364 7_2:+61255163 None:intergenic
AAGTTTGCTCAGATAAATAA+TGG 0.444421 7_2:-61256980 Msa1067050:intron
CCGGGAGGTTATGGTGGTCC+TGG 0.445625 7_2:-61256524 Msa1067050:CDS
TTTGTCAAATGCATTTAGAA+AGG 0.446085 7_2:+61254910 None:intergenic
TCTGTAAAAGATGTAAAATC+TGG 0.447024 7_2:-61255340 Msa1067050:CDS
AGAGGTGTATCTTATTGAAC+GGG 0.447427 7_2:-61254429 Msa1067050:three_prime_UTR
GGAAAATGAAAAGGGTTCTC+TGG 0.447913 7_2:-61255961 Msa1067050:CDS
TTTCATATCATTTCATGACT+TGG 0.455139 7_2:-61254402 Msa1067050:three_prime_UTR
TTAATGCTCTATTTGAGTAC+AGG 0.455543 7_2:+61254731 None:intergenic
GGAACAACAATGGGGTAACC+AGG 0.458050 7_2:-61256480 Msa1067050:CDS
GATCAATGTGGTGGCTGAAC+GGG 0.458955 7_2:+61257833 None:intergenic
GGTGGAGTACGGCGGTGACT+TGG 0.466137 7_2:-61255940 Msa1067050:CDS
GCTAGAATCACTTCTCACTT+TGG 0.471450 7_2:-61255116 Msa1067050:intron
TCCATTATAGGGGAGGTTGC+TGG 0.471727 7_2:-61256188 Msa1067050:CDS
GGTAGCCAACCTACAATAGC+TGG 0.471925 7_2:+61255397 None:intergenic
AAGACACTGCATGTATTAGT+TGG 0.476474 7_2:+61254577 None:intergenic
GGATGACCAGCTTCAAATCC+AGG 0.477797 7_2:+61256545 None:intergenic
TGCAAAACACCAAGGTTTGT+AGG 0.486752 7_2:+61254694 None:intergenic
CCTTAGCCTTGTTCTTGTCA+GGG 0.490496 7_2:+61257014 None:intergenic
GATTTATATGGAGATGAGAA+AGG 0.496080 7_2:-61256572 Msa1067050:CDS
GATTCGAGAGTGAGAAAGCT+AGG 0.497255 7_2:-61255433 Msa1067050:CDS
TCTTACAAGGAAAATGAAAA+GGG 0.501980 7_2:-61255969 Msa1067050:CDS
ATTGTAGGTTGGCTACCTAA+TGG 0.504995 7_2:-61255391 Msa1067050:CDS
TGGAAGCATTAACTGTGAAA+AGG 0.505775 7_2:-61256054 Msa1067050:CDS
TGTATTAACGGTCACGGTGA+CGG 0.511033 7_2:+61257908 None:intergenic
CGGCGGTGACTTGGCTGTCA+AGG 0.512307 7_2:-61255931 Msa1067050:CDS
CACTTCCAGCTATTGTAGGT+TGG 0.512519 7_2:-61255402 Msa1067050:CDS
AAATGGAAGCGGCAGCTCTA+GGG 0.516656 7_2:-61254975 Msa1067050:CDS
CATTGCCTTCAGTGATGTAC+AGG 0.517426 7_2:-61255739 Msa1067050:intron
TCTAGGGACTCCATTTCCTA+TGG 0.523006 7_2:-61254959 Msa1067050:CDS
AAAGGAAGTCTCATTCTGTA+AGG 0.525693 7_2:-61256036 Msa1067050:CDS
CGATCAATGTGGTGGCTGAA+CGG 0.527312 7_2:+61257832 None:intergenic
AAGAAAGAAATAGTTGATGA+AGG 0.528006 7_2:-61256269 Msa1067050:CDS
GTTGAGAGAAGCAGCACCCT+AGG 0.530951 7_2:+61255816 None:intergenic
ATTTGGTTACCTACAAACCT+TGG 0.531218 7_2:-61254703 Msa1067050:three_prime_UTR
TTGCCTACAAACCTCGGAAA+GGG 0.533121 7_2:-61254856 Msa1067050:CDS
CAAAACAATCGACCCGTACA+AGG 0.536128 7_2:-61257769 Msa1067050:intron
GGAAACCCTGGATTTGAAGC+TGG 0.537781 7_2:-61256551 Msa1067050:CDS
ATTCCTTGTTAATCATGAGA+TGG 0.539933 7_2:+61254512 None:intergenic
GGTCTCAATCATCTCAATCT+GGG 0.540073 7_2:-61256340 Msa1067050:CDS
AAGCCTTCTGAATTTCTCGT+TGG 0.541483 7_2:+61257154 None:intergenic
TACAGGTGAAATGACAATAG+AGG 0.544357 7_2:-61254819 Msa1067050:CDS
TCCTTGTCAAGAAAACCAAA+TGG 0.544854 7_2:-61254992 Msa1067050:CDS
CTATAATGGACTCAAAGTGT+TGG 0.546531 7_2:+61256201 None:intergenic
GGATTTGAAGCTGGTCATCC+GGG 0.546824 7_2:-61256542 Msa1067050:CDS
AAGGGTTCTCTGGTGGAGTA+CGG 0.550243 7_2:-61255951 Msa1067050:CDS
ATCACCAGAGCCGCCGCCAA+AGG 0.551083 7_2:+61256433 None:intergenic
TAGAGGTGTATCTTATTGAA+CGG 0.553512 7_2:-61254430 Msa1067050:three_prime_UTR
TATTGATTGCCTACAAACCT+CGG 0.555595 7_2:-61254862 Msa1067050:CDS
AGAATGACTTAGAGCCTCCC+TGG 0.555880 7_2:+61256462 None:intergenic
GTCTCATTCTGTAAGGAGCT+CGG 0.559611 7_2:-61256029 Msa1067050:CDS
ACGGGTCATCATGACGGTGA+CGG 0.560421 7_2:+61257851 None:intergenic
TCTTATTCACCCTCTTTGAG+AGG 0.560524 7_2:-61256227 Msa1067050:CDS
CCTTTAGATCTTCCAAAGCA+AGG 0.562071 7_2:-61255144 Msa1067050:CDS
GAGGTTGCTGGTACATTGCA+AGG 0.563889 7_2:-61256176 Msa1067050:CDS
CTTTAGATCTTCCAAAGCAA+GGG 0.565533 7_2:-61255143 Msa1067050:CDS
AAAAGAAAGTAACCTTGTAC+GGG 0.565722 7_2:+61257757 None:intergenic
CTTTGAGTCCATTATAGGGG+AGG 0.569961 7_2:-61256195 Msa1067050:CDS
GGAGGTTATGGTGGTCCTGG+TGG 0.572253 7_2:-61256521 Msa1067050:CDS
TCAGACCAGGGGAACAACAA+TGG 0.575494 7_2:-61256490 Msa1067050:CDS
AAGGAAACACAAGGCGGCGA+CGG 0.576209 7_2:+61257806 None:intergenic
CACTGCTGAAAAGTTACCTA+GGG 0.576457 7_2:-61255832 Msa1067050:CDS
GCACTGCTGAAAAGTTACCT+AGG 0.578112 7_2:-61255833 Msa1067050:CDS
GGTGGATTTAACTTCAGACC+AGG 0.582161 7_2:-61256503 Msa1067050:CDS
GGAGATGAGAAAGGAAACCC+TGG 0.582670 7_2:-61256563 Msa1067050:CDS
CCCTGACAAGAACAAGGCTA+AGG 0.583292 7_2:-61257014 Msa1067050:CDS
TCAAGAAAACCAAATGGAAG+CGG 0.585318 7_2:-61254986 Msa1067050:CDS
AAACTTTGAGGCTCTTTGTG+GGG 0.588840 7_2:-61255194 Msa1067050:CDS
TGAAGAATCTAAGAGACCAT+AGG 0.589085 7_2:+61254943 None:intergenic
CCAGGACCACCATAACCTCC+CGG 0.595008 7_2:+61256524 None:intergenic
TGTTGGATGCCTCTCAAAGA+GGG 0.597287 7_2:+61256218 None:intergenic
ACAGTGAATTTCCCTTTCCG+AGG 0.599381 7_2:+61254845 None:intergenic
TGGTATATCTCCGCTTAGAA+CGG 0.601976 7_2:+61254775 None:intergenic
ATTGCCTACAAACCTCGGAA+AGG 0.606305 7_2:-61254857 Msa1067050:CDS
TGTTCGTGTAAATAAGTTCG+CGG 0.606599 7_2:+61257943 None:intergenic
AAAAGCCTTGGAGCTTTGCG+CGG 0.611357 7_2:+61255999 None:intergenic
GGTCATCCGGGAGGTTATGG+TGG 0.611379 7_2:-61256530 Msa1067050:CDS
TATATCCGCGCAAAGCTCCA+AGG 0.612102 7_2:-61256004 Msa1067050:CDS
AAATGAAAAGGGTTCTCTGG+TGG 0.612472 7_2:-61255958 Msa1067050:CDS
GTTCGTGTAAATAAGTTCGC+GGG 0.614250 7_2:+61257944 None:intergenic
GTCACGGTGACGGAATTGAT+CGG 0.620958 7_2:+61257918 None:intergenic
GCATACCTGTACATCACTGA+AGG 0.621284 7_2:+61255734 None:intergenic
ACACTTTGAGTCCATTATAG+GGG 0.621315 7_2:-61256198 Msa1067050:CDS
CCTGACAAGAACAAGGCTAA+GGG 0.624057 7_2:-61257013 Msa1067050:CDS
GATGACCAGCTTCAAATCCA+GGG 0.625923 7_2:+61256546 None:intergenic
GAACAACAATGGGGTAACCA+GGG 0.633630 7_2:-61256479 Msa1067050:CDS
GTGGATTTAACTTCAGACCA+GGG 0.636460 7_2:-61256502 Msa1067050:CDS
ATTCTATCTGCAAAACACCA+AGG 0.636927 7_2:+61254686 None:intergenic
GTGTTGGATGCCTCTCAAAG+AGG 0.638861 7_2:+61256217 None:intergenic
AAAACTTATTCTGAAAACAG+GGG 0.643772 7_2:-61255365 Msa1067050:CDS
GGACCATCTCATGATTAACA+AGG 0.644691 7_2:-61254515 Msa1067050:three_prime_UTR
TTCGAAATCGAAACTGAGAA+CGG 0.645684 7_2:+61257885 None:intergenic
GGTCTGAAGTTAAATCCACC+AGG 0.648334 7_2:+61256506 None:intergenic
TTTATCAGCTCCGTTCTAAG+CGG 0.648770 7_2:-61254785 Msa1067050:CDS
ATATCACCCTGACAAGAACA+AGG 0.649669 7_2:-61257020 Msa1067050:CDS
GGCTGAACGGGTCATCATGA+CGG 0.650028 7_2:+61257845 None:intergenic
GAACGGTGTATTAACGGTCA+CGG 0.657308 7_2:+61257902 None:intergenic
CAACAATGGGGTAACCAGGG+AGG 0.659802 7_2:-61256476 Msa1067050:CDS
GACGGTGACGATCAATGTGG+TGG 0.676126 7_2:+61257824 None:intergenic
AAGCCAACGAGAAATTCAGA+AGG 0.680585 7_2:-61257157 Msa1067050:CDS
TGGATTTAACTTCAGACCAG+GGG 0.681095 7_2:-61256501 Msa1067050:CDS
TTTGAAGCTGGTCATCCGGG+AGG 0.700469 7_2:-61256539 Msa1067050:CDS
GGTTCTCTGGTGGAGTACGG+CGG 0.703008 7_2:-61255948 Msa1067050:CDS
TAGTTGATGAAGGAATGACT+TGG 0.720265 7_2:-61256259 Msa1067050:CDS
AGACCAGGGGAACAACAATG+GGG 0.745284 7_2:-61256488 Msa1067050:CDS
TTGTAAAAGGAAACACAAGG+CGG 0.763662 7_2:+61257800 None:intergenic
GGATTGTAAAAGGAAACACA+AGG 0.768636 7_2:+61257797 None:intergenic
GGCGACGGTGACGATCAATG+TGG 0.773922 7_2:+61257821 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAAACAATATATATA+AGG + chr7_2:61255221-61255240 None:intergenic 10.0%
!! TGAGATTAAAATATGAAAAA+AGG - chr7_2:61254771-61254790 Msa1067050:CDS 15.0%
!! AAGATTATAAACATATATGA+TGG + chr7_2:61256692-61256711 None:intergenic 15.0%
!!! AGTAATATTGTTTTAATTAG+AGG - chr7_2:61257830-61257849 Msa1067050:CDS 15.0%
!!! TTAATTCGTGAAACTTTTAT+TGG - chr7_2:61254544-61254563 Msa1067050:three_prime_UTR 20.0%
!!! TAATTCGTGAAACTTTTATT+GGG - chr7_2:61254545-61254564 Msa1067050:three_prime_UTR 20.0%
!!! ATAATTTGAGGTTAAAATAG+TGG - chr7_2:61254573-61254592 Msa1067050:three_prime_UTR 20.0%
!! TAGTTAATAGTTTATTGCAT+TGG - chr7_2:61254680-61254699 Msa1067050:three_prime_UTR 20.0%
!!! TGTTACTTTCTTCTTTAATT+TGG - chr7_2:61254721-61254740 Msa1067050:exon 20.0%
!! GTAACTTATTATACTACTAA+GGG + chr7_2:61255569-61255588 None:intergenic 20.0%
!! AGTAACTTATTATACTACTA+AGG + chr7_2:61255570-61255589 None:intergenic 20.0%
!!! TAGTATAATAAGTTACTTTC+TGG - chr7_2:61255573-61255592 Msa1067050:intron 20.0%
!! AGGAAGAATTATGATTTATA+TGG - chr7_2:61255693-61255712 Msa1067050:intron 20.0%
!! CTTGTAGATATTTGAATTTA+TGG + chr7_2:61255991-61256010 None:intergenic 20.0%
!!! GTATATTTCAGATTGTTTTT+TGG - chr7_2:61256735-61256754 Msa1067050:intron 20.0%
!!! AAAAACTTATTCTGAAAACA+GGG - chr7_2:61256911-61256930 Msa1067050:intron 20.0%
!!! TTTTGAGAAAGTAAGTAAAA+AGG - chr7_2:61256990-61257009 Msa1067050:CDS 20.0%
!!! GATTGAAGAGTATTAATTAT+AGG - chr7_2:61257741-61257760 Msa1067050:intron 20.0%
! AAAAAGAAAGTAACCTTGTA+CGG + chr7_2:61254524-61254543 None:intergenic 25.0%
!! TATTGGGCTTTTATAATTTG+AGG - chr7_2:61254561-61254580 Msa1067050:three_prime_UTR 25.0%
!! TAGTGGAAAAGGTTAAATTT+TGG - chr7_2:61254590-61254609 Msa1067050:three_prime_UTR 25.0%
!! AGTGGAAAAGGTTAAATTTT+GGG - chr7_2:61254591-61254610 Msa1067050:three_prime_UTR 25.0%
!!! TACTTTCTTCTTTAATTTGG+TGG - chr7_2:61254724-61254743 Msa1067050:exon 25.0%
!! TGAAAAAAGGATGAATTTTG+AGG - chr7_2:61254784-61254803 Msa1067050:CDS 25.0%
!! GAAAAAAGGATGAATTTTGA+GGG - chr7_2:61254785-61254804 Msa1067050:CDS 25.0%
!! ATTAGAATTGAAGTGTTTAG+AGG - chr7_2:61254819-61254838 Msa1067050:CDS 25.0%
!! TTAGAATTGAAGTGTTTAGA+GGG - chr7_2:61254820-61254839 Msa1067050:CDS 25.0%
! CATCTTGTTCATTTGAATTT+GGG + chr7_2:61254996-61255015 None:intergenic 25.0%
!!! GCACATTTCAATTTTTTATC+AGG - chr7_2:61255075-61255094 Msa1067050:intron 25.0%
!!! TCAATTTTTTATCAGGTTCT+TGG - chr7_2:61255082-61255101 Msa1067050:intron 25.0%
!!! CAATTTTTTATCAGGTTCTT+GGG - chr7_2:61255083-61255102 Msa1067050:intron 25.0%
!!! AATTTTTTATCAGGTTCTTG+GGG - chr7_2:61255084-61255103 Msa1067050:intron 25.0%
!! AAGTTTGCTCAGATAAATAA+TGG - chr7_2:61255297-61255316 Msa1067050:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG + chr7_2:61255371-61255390 None:intergenic 25.0%
!! TTTTATCTGATGAACAAAAG+AGG - chr7_2:61255673-61255692 Msa1067050:intron 25.0%
!!! TTTATGGCCTTAAAACTTTT+GGG + chr7_2:61255975-61255994 None:intergenic 25.0%
!!! ATTTATGGCCTTAAAACTTT+TGG + chr7_2:61255976-61255995 None:intergenic 25.0%
!!! AAGAAAGAAATAGTTGATGA+AGG - chr7_2:61256008-61256027 Msa1067050:CDS 25.0%
!!! TCTATTGATTGTTTTGTAGT+TGG - chr7_2:61256165-61256184 Msa1067050:intron 25.0%
! TAAGAATAAACAAAAAGCCT+TGG + chr7_2:61256293-61256312 None:intergenic 25.0%
!!! GCTTTTTGTTTATTCTTACA+AGG - chr7_2:61256295-61256314 Msa1067050:CDS 25.0%
! TTCTTACAAGGAAAATGAAA+AGG - chr7_2:61256307-61256326 Msa1067050:CDS 25.0%
! TCTTACAAGGAAAATGAAAA+GGG - chr7_2:61256308-61256327 Msa1067050:CDS 25.0%
!! AACCTTTTACATAAAGAACT+AGG + chr7_2:61256616-61256635 None:intergenic 25.0%
!!! TATTTCAGATTGTTTTTTGG+TGG - chr7_2:61256738-61256757 Msa1067050:intron 25.0%
! GTGTATCTTGAATTATTTAC+AGG - chr7_2:61256807-61256826 Msa1067050:intron 25.0%
!! AGAATAAGTTTTTCTCCATT+AGG + chr7_2:61256904-61256923 None:intergenic 25.0%
!! GAAAAACTTATTCTGAAAAC+AGG - chr7_2:61256910-61256929 Msa1067050:intron 25.0%
!! AAAACTTATTCTGAAAACAG+GGG - chr7_2:61256912-61256931 Msa1067050:intron 25.0%
! TCTGTAAAAGATGTAAAATC+TGG - chr7_2:61256937-61256956 Msa1067050:intron 25.0%
! TTTGTCAAATGCATTTAGAA+AGG + chr7_2:61257370-61257389 None:intergenic 25.0%
!! ATAGAGCATTAAGGTATATT+TGG - chr7_2:61257557-61257576 Msa1067050:intron 25.0%
! TTATCTGATCATCAGATAAT+TGG - chr7_2:61257795-61257814 Msa1067050:CDS 25.0%
!! ATCATCAGATAATTGGTAAT+AGG - chr7_2:61257802-61257821 Msa1067050:CDS 25.0%
! GTCATGAAATGATATGAAAT+AGG + chr7_2:61257874-61257893 None:intergenic 25.0%
! TTTCATATCATTTCATGACT+TGG - chr7_2:61257875-61257894 Msa1067050:five_prime_UTR 25.0%
AAAAGAAAGTAACCTTGTAC+GGG + chr7_2:61254523-61254542 None:intergenic 30.0%
! TGAGGTTAAAATAGTGGAAA+AGG - chr7_2:61254579-61254598 Msa1067050:three_prime_UTR 30.0%
! GTGGAAAAGGTTAAATTTTG+GGG - chr7_2:61254592-61254611 Msa1067050:three_prime_UTR 30.0%
! TGGAAAAGGTTAAATTTTGG+GGG - chr7_2:61254593-61254612 Msa1067050:three_prime_UTR 30.0%
ATTGCATTGGATTGCATTAT+TGG - chr7_2:61254693-61254712 Msa1067050:three_prime_UTR 30.0%
TTGCATTGGATTGCATTATT+GGG - chr7_2:61254694-61254713 Msa1067050:three_prime_UTR 30.0%
!! TAATTTGGTGGAACTTGTTT+TGG - chr7_2:61254736-61254755 Msa1067050:exon 30.0%
CCATCTTGTTCATTTGAATT+TGG + chr7_2:61254997-61255016 None:intergenic 30.0%
CCAAATTCAAATGAACAAGA+TGG - chr7_2:61254994-61255013 Msa1067050:CDS 30.0%
! CTACATAAAATTTCCCCTTT+TGG + chr7_2:61255022-61255041 None:intergenic 30.0%
! GTTAAGTTGTTTATCCAAAC+AGG + chr7_2:61255372-61255391 None:intergenic 30.0%
! ACTCTTTTCATAAGCTATCT+TGG - chr7_2:61255423-61255442 Msa1067050:CDS 30.0%
!!! GTGTCATAAGCTGTTTTTAT+AGG - chr7_2:61255478-61255497 Msa1067050:intron 30.0%
! TAAGCATTGCAAGATTGTTA+GGG + chr7_2:61255508-61255527 None:intergenic 30.0%
! ATAAGCATTGCAAGATTGTT+AGG + chr7_2:61255509-61255528 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG + chr7_2:61255533-61255552 None:intergenic 30.0%
!! TCTACCTATTTCTTGTTGTT+AGG - chr7_2:61255598-61255617 Msa1067050:intron 30.0%
ACATCCTAACAACAAGAAAT+AGG + chr7_2:61255605-61255624 None:intergenic 30.0%
GATTTATATGGAGATGAGAA+AGG - chr7_2:61255705-61255724 Msa1067050:intron 30.0%
! GATTCGAATTCTTTTGGATT+TGG - chr7_2:61255864-61255883 Msa1067050:CDS 30.0%
!! GAATTCTTTTGGATTTGGTT+TGG - chr7_2:61255869-61255888 Msa1067050:CDS 30.0%
!!! GATCTTCTTGGAAACTTTTT+TGG - chr7_2:61255894-61255913 Msa1067050:CDS 30.0%
!!! GGAAACTTTTTTGGTGATTT+TGG - chr7_2:61255903-61255922 Msa1067050:CDS 30.0%
!! TTATGGCCTTAAAACTTTTG+GGG + chr7_2:61255974-61255993 None:intergenic 30.0%
AACACTTTGAGTCCATTATA+GGG - chr7_2:61256078-61256097 Msa1067050:intron 30.0%
! ACTTGCCAATGTTTTCAAAA+CGG - chr7_2:61256393-61256412 Msa1067050:CDS 30.0%
!!! TCAATCCGTTTTGAAAACAT+TGG + chr7_2:61256401-61256420 None:intergenic 30.0%
!!! AATTACAGGAGTGTTCTTTT+TGG + chr7_2:61256486-61256505 None:intergenic 30.0%
AAAAGAACACTCCTGTAATT+TGG - chr7_2:61256486-61256505 Msa1067050:CDS 30.0%
! AGCCTAGTTCTTTATGTAAA+AGG - chr7_2:61256611-61256630 Msa1067050:CDS 30.0%
TAGTTAATTCATTAGTCGCA+TGG - chr7_2:61256645-61256664 Msa1067050:intron 30.0%
!! TCGTTAAAGCATTAAGTTGA+TGG + chr7_2:61257199-61257218 None:intergenic 30.0%
TATCTCGTGCAAAATCTTAA+AGG - chr7_2:61257233-61257252 Msa1067050:intron 30.0%
ATCTCGTGCAAAATCTTAAA+GGG - chr7_2:61257234-61257253 Msa1067050:intron 30.0%
CTAAATGCATTTGACAAAAC+AGG - chr7_2:61257372-61257391 Msa1067050:intron 30.0%
TTCTTATGTGTTTCCCTAAA+TGG + chr7_2:61257525-61257544 None:intergenic 30.0%
TTAATGCTCTATTTGAGTAC+AGG + chr7_2:61257549-61257568 None:intergenic 30.0%
! TGTACTCAAATAGAGCATTA+AGG - chr7_2:61257548-61257567 Msa1067050:intron 30.0%
TGTATCATATGTACTCTTGT+TGG + chr7_2:61257633-61257652 None:intergenic 30.0%
ATTCCTTGTTAATCATGAGA+TGG + chr7_2:61257768-61257787 None:intergenic 30.0%
! TAGAGGTGTATCTTATTGAA+CGG - chr7_2:61257847-61257866 Msa1067050:exon 30.0%
TGTTCGTGTAAATAAGTTCG+CGG + chr7_2:61254337-61254356 None:intergenic 35.0%
AACTGAGAACGGTGTATTAA+CGG + chr7_2:61254384-61254403 None:intergenic 35.0%
TTCGAAATCGAAACTGAGAA+CGG + chr7_2:61254395-61254414 None:intergenic 35.0%
TTGTAAAAGGAAACACAAGG+CGG + chr7_2:61254480-61254499 None:intergenic 35.0%
GGATTGTAAAAGGAAACACA+AGG + chr7_2:61254483-61254502 None:intergenic 35.0%
!!! TTTTGGCTTCGGATTGTAAA+AGG + chr7_2:61254493-61254512 None:intergenic 35.0%
TCAAATAAGTCAGTCCAAAC+AGG - chr7_2:61255543-61255562 Msa1067050:intron 35.0%
! AAGTCATTCTCCTTTTCCTT+TGG - chr7_2:61255828-61255847 Msa1067050:CDS 35.0%
! TCTGGTGATTCGAATTCTTT+TGG - chr7_2:61255858-61255877 Msa1067050:CDS 35.0%
!! TTTGGTTTGGATGATCTTCT+TGG - chr7_2:61255882-61255901 Msa1067050:CDS 35.0%
!! GTGATTTTGGCAGTTCATTT+AGG - chr7_2:61255916-61255935 Msa1067050:CDS 35.0%
!! TATGGCCTTAAAACTTTTGG+GGG + chr7_2:61255973-61255992 None:intergenic 35.0%
!! TAGTTGATGAAGGAATGACT+TGG - chr7_2:61256018-61256037 Msa1067050:CDS 35.0%
!! CTATAATGGACTCAAAGTGT+TGG + chr7_2:61256079-61256098 None:intergenic 35.0%
CAACACTTTGAGTCCATTAT+AGG - chr7_2:61256077-61256096 Msa1067050:intron 35.0%
ACACTTTGAGTCCATTATAG+GGG - chr7_2:61256079-61256098 Msa1067050:intron 35.0%
!! TGGAAGCATTAACTGTGAAA+AGG - chr7_2:61256223-61256242 Msa1067050:CDS 35.0%
AAAGGAAGTCTCATTCTGTA+AGG - chr7_2:61256241-61256260 Msa1067050:CDS 35.0%
ATTTCTTTCTCTGCACATGT+AGG - chr7_2:61256585-61256604 Msa1067050:CDS 35.0%
!!! AGATTGTTTTTTGGTGGAAG+TGG - chr7_2:61256744-61256763 Msa1067050:intron 35.0%
! TGAATCAGCTTGTTCTTTCT+TGG + chr7_2:61257031-61257050 None:intergenic 35.0%
! AACACATTCAGTTGCTTTCT+CGG - chr7_2:61257058-61257077 Msa1067050:intron 35.0%
CTTTAGATCTTCCAAAGCAA+GGG - chr7_2:61257134-61257153 Msa1067050:intron 35.0%
TTCTGTGAGACCTGAAATAA+CGG + chr7_2:61257264-61257283 None:intergenic 35.0%
TCCTTGTCAAGAAAACCAAA+TGG - chr7_2:61257285-61257304 Msa1067050:intron 35.0%
!!! TCCATTTGGTTTTCTTGACA+AGG + chr7_2:61257289-61257308 None:intergenic 35.0%
TCAAGAAAACCAAATGGAAG+CGG - chr7_2:61257291-61257310 Msa1067050:intron 35.0%
ATCTAAGAGACCATAGGAAA+TGG + chr7_2:61257331-61257350 None:intergenic 35.0%
TGAAGAATCTAAGAGACCAT+AGG + chr7_2:61257337-61257356 None:intergenic 35.0%
! TATTGATTGCCTACAAACCT+CGG - chr7_2:61257415-61257434 Msa1067050:intron 35.0%
GGGAAATTCACTGTATTTAC+AGG - chr7_2:61257441-61257460 Msa1067050:intron 35.0%
TACAGGTGAAATGACAATAG+AGG - chr7_2:61257458-61257477 Msa1067050:intron 35.0%
TAAGCGGAGATATACCATTT+AGG - chr7_2:61257508-61257527 Msa1067050:intron 35.0%
AAGCGGAGATATACCATTTA+GGG - chr7_2:61257509-61257528 Msa1067050:intron 35.0%
ATTTGGTTACCTACAAACCT+TGG - chr7_2:61257574-61257593 Msa1067050:intron 35.0%
ATTCTATCTGCAAAACACCA+AGG + chr7_2:61257594-61257613 None:intergenic 35.0%
AAGACACTGCATGTATTAGT+TGG + chr7_2:61257703-61257722 None:intergenic 35.0%
! AGAGGTGTATCTTATTGAAC+GGG - chr7_2:61257848-61257867 Msa1067050:exon 35.0%
GTTCGTGTAAATAAGTTCGC+GGG + chr7_2:61254336-61254355 None:intergenic 40.0%
ATGAACAAGATGGCTCCAAA+AGG - chr7_2:61255004-61255023 Msa1067050:CDS 40.0%
TGAACAAGATGGCTCCAAAA+GGG - chr7_2:61255005-61255024 Msa1067050:CDS 40.0%
AAGCCAACGAGAAATTCAGA+AGG - chr7_2:61255120-61255139 Msa1067050:CDS 40.0%
AAGCCTTCTGAATTTCTCGT+TGG + chr7_2:61255126-61255145 None:intergenic 40.0%
CCAAGTTATCAGAGATAGCT+GGG + chr7_2:61255198-61255217 None:intergenic 40.0%
ATATCACCCTGACAAGAACA+AGG - chr7_2:61255257-61255276 Msa1067050:CDS 40.0%
TGCCACTGGATAAAAGACTA+AGG - chr7_2:61255345-61255364 Msa1067050:CDS 40.0%
TAAAAGACTAAGGCCCTGTT+TGG - chr7_2:61255355-61255374 Msa1067050:CDS 40.0%
TATACTACTAAGGGCCTGTT+TGG + chr7_2:61255560-61255579 None:intergenic 40.0%
ATCTCGTACGCTGTTAAAAG+AGG + chr7_2:61255654-61255673 None:intergenic 40.0%
! GTGGATTTAACTTCAGACCA+GGG - chr7_2:61255775-61255794 Msa1067050:CDS 40.0%
! TGGATTTAACTTCAGACCAG+GGG - chr7_2:61255776-61255795 Msa1067050:CDS 40.0%
! TCATTCTCCTTTTCCTTTGG+CGG - chr7_2:61255831-61255850 Msa1067050:CDS 40.0%
AGGTCTCAATCATCTCAATC+TGG - chr7_2:61255936-61255955 Msa1067050:CDS 40.0%
GGTCTCAATCATCTCAATCT+GGG - chr7_2:61255937-61255956 Msa1067050:CDS 40.0%
!! AAAACTTTTGGGGGAACTCT+TGG + chr7_2:61255964-61255983 None:intergenic 40.0%
! GAGTTCCCCCAAAAGTTTTA+AGG - chr7_2:61255965-61255984 Msa1067050:CDS 40.0%
TCTTATTCACCCTCTTTGAG+AGG - chr7_2:61256050-61256069 Msa1067050:CDS 40.0%
! TACATTGCAAGGAGCTTTGA+AGG - chr7_2:61256112-61256131 Msa1067050:intron 40.0%
GGAAAATGAAAAGGGTTCTC+TGG - chr7_2:61256316-61256335 Msa1067050:CDS 40.0%
AAATGAAAAGGGTTCTCTGG+TGG - chr7_2:61256319-61256338 Msa1067050:CDS 40.0%
CACTGCTGAAAAGTTACCTA+GGG - chr7_2:61256445-61256464 Msa1067050:CDS 40.0%
CTAAGAACACGCCAAATTAC+AGG + chr7_2:61256500-61256519 None:intergenic 40.0%
GTAATTTGGCGTGTTCTTAG+TGG - chr7_2:61256500-61256519 Msa1067050:CDS 40.0%
ATGTACAGGTATGCAAGTGA+TGG - chr7_2:61256552-61256571 Msa1067050:CDS 40.0%
! ATTGTAGGTTGGCTACCTAA+TGG - chr7_2:61256886-61256905 Msa1067050:intron 40.0%
!! TCAAACTTTGAGGCTCTTTG+TGG - chr7_2:61257081-61257100 Msa1067050:intron 40.0%
!! CAAACTTTGAGGCTCTTTGT+GGG - chr7_2:61257082-61257101 Msa1067050:intron 40.0%
!! AAACTTTGAGGCTCTTTGTG+GGG - chr7_2:61257083-61257102 Msa1067050:intron 40.0%
AGAACTCCAGTATGCGTAAT+TGG - chr7_2:61257108-61257127 Msa1067050:intron 40.0%
!! CCTTGCTTTGGAAGATCTAA+AGG + chr7_2:61257136-61257155 None:intergenic 40.0%
CCTTTAGATCTTCCAAAGCA+AGG - chr7_2:61257133-61257152 Msa1067050:intron 40.0%
!!! TTCTAGCTTTTCCCTTGCTT+TGG + chr7_2:61257148-61257167 None:intergenic 40.0%
GCTAGAATCACTTCTCACTT+TGG - chr7_2:61257161-61257180 Msa1067050:CDS 40.0%
! TTTATCAGCTCCGTTCTAAG+CGG - chr7_2:61257492-61257511 Msa1067050:intron 40.0%
TGGTATATCTCCGCTTAGAA+CGG + chr7_2:61257505-61257524 None:intergenic 40.0%
TGCAAAACACCAAGGTTTGT+AGG + chr7_2:61257586-61257605 None:intergenic 40.0%
GGACCATCTCATGATTAACA+AGG - chr7_2:61257762-61257781 Msa1067050:intron 40.0%
TGTATTAACGGTCACGGTGA+CGG + chr7_2:61254372-61254391 None:intergenic 45.0%
GAACGGTGTATTAACGGTCA+CGG + chr7_2:61254378-61254397 None:intergenic 45.0%
! CTTGTACGGGTCGATTGTTT+TGG + chr7_2:61254510-61254529 None:intergenic 45.0%
CAAAACAATCGACCCGTACA+AGG - chr7_2:61254508-61254527 Msa1067050:three_prime_UTR 45.0%
GAACAAGATGGCTCCAAAAG+GGG - chr7_2:61255006-61255025 Msa1067050:CDS 45.0%
CCCAGCTATCTCTGATAACT+TGG - chr7_2:61255195-61255214 Msa1067050:CDS 45.0%
GCCAAGTTATCAGAGATAGC+TGG + chr7_2:61255199-61255218 None:intergenic 45.0%
!! CCTTAGCCTTGTTCTTGTCA+GGG + chr7_2:61255266-61255285 None:intergenic 45.0%
CCTGACAAGAACAAGGCTAA+GGG - chr7_2:61255264-61255283 Msa1067050:CDS 45.0%
GCTTTCTCTCTATATGCCAC+TGG - chr7_2:61255331-61255350 Msa1067050:CDS 45.0%
!! GGCCTTAGTCTTTTATCCAG+TGG + chr7_2:61255350-61255369 None:intergenic 45.0%
GATGACCAGCTTCAAATCCA+GGG + chr7_2:61255734-61255753 None:intergenic 45.0%
! TGGATTTGAAGCTGGTCATC+CGG - chr7_2:61255734-61255753 Msa1067050:intron 45.0%
! GGTCTGAAGTTAAATCCACC+AGG + chr7_2:61255774-61255793 None:intergenic 45.0%
! GGTGGATTTAACTTCAGACC+AGG - chr7_2:61255774-61255793 Msa1067050:CDS 45.0%
GAACAACAATGGGGTAACCA+GGG - chr7_2:61255798-61255817 Msa1067050:CDS 45.0%
TGTTGGATGCCTCTCAAAGA+GGG + chr7_2:61256062-61256081 None:intergenic 45.0%
CTTTGAGTCCATTATAGGGG+AGG - chr7_2:61256082-61256101 Msa1067050:intron 45.0%
GCTTCCAACCTGTCAAAAGA+GGG + chr7_2:61256210-61256229 None:intergenic 45.0%
TGCTTCCAACCTGTCAAAAG+AGG + chr7_2:61256211-61256230 None:intergenic 45.0%
GTCTCATTCTGTAAGGAGCT+CGG - chr7_2:61256248-61256267 Msa1067050:CDS 45.0%
GCACTGCTGAAAAGTTACCT+AGG - chr7_2:61256444-61256463 Msa1067050:CDS 45.0%
CATTGCCTTCAGTGATGTAC+AGG - chr7_2:61256538-61256557 Msa1067050:CDS 45.0%
GCATACCTGTACATCACTGA+AGG + chr7_2:61256546-61256565 None:intergenic 45.0%
GATTCGAGAGTGAGAAAGCT+AGG - chr7_2:61256844-61256863 Msa1067050:intron 45.0%
GATGCACTTCCAGCTATTGT+AGG - chr7_2:61256871-61256890 Msa1067050:intron 45.0%
CACTTCCAGCTATTGTAGGT+TGG - chr7_2:61256875-61256894 Msa1067050:intron 45.0%
GCTTTCTCGGTCAAACTTTG+AGG - chr7_2:61257071-61257090 Msa1067050:intron 45.0%
! AAGGCACCAATTACGCATAC+TGG + chr7_2:61257117-61257136 None:intergenic 45.0%
!! AAAGGGAGCACCGTTATTTC+AGG - chr7_2:61257251-61257270 Msa1067050:intron 45.0%
TCTAGGGACTCCATTTCCTA+TGG - chr7_2:61257318-61257337 Msa1067050:intron 45.0%
ATTGCCTACAAACCTCGGAA+AGG - chr7_2:61257420-61257439 Msa1067050:intron 45.0%
TTGCCTACAAACCTCGGAAA+GGG - chr7_2:61257421-61257440 Msa1067050:intron 45.0%
TTTCCCTTTCCGAGGTTTGT+AGG + chr7_2:61257427-61257446 None:intergenic 45.0%
ACAGTGAATTTCCCTTTCCG+AGG + chr7_2:61257435-61257454 None:intergenic 45.0%
!!! ATTTTAATTGAAATATTTTT+AGG - chr7_2:61254628-61254647 Msa1067050:three_prime_UTR 5.0%
!!! TTTTAATTGAAATATTTTTA+GGG - chr7_2:61254629-61254648 Msa1067050:three_prime_UTR 5.0%
!! GTCACGGTGACGGAATTGAT+CGG + chr7_2:61254362-61254381 None:intergenic 50.0%
GATCAATGTGGTGGCTGAAC+GGG + chr7_2:61254447-61254466 None:intergenic 50.0%
CGATCAATGTGGTGGCTGAA+CGG + chr7_2:61254448-61254467 None:intergenic 50.0%
!!! CGGGTCGATTGTTTTGGCTT+CGG + chr7_2:61254504-61254523 None:intergenic 50.0%
CCCTGACAAGAACAAGGCTA+AGG - chr7_2:61255263-61255282 Msa1067050:CDS 50.0%
!! CCCTTAGCCTTGTTCTTGTC+AGG + chr7_2:61255267-61255286 None:intergenic 50.0%
GGAGATGAGAAAGGAAACCC+TGG - chr7_2:61255714-61255733 Msa1067050:intron 50.0%
! GGAAACCCTGGATTTGAAGC+TGG - chr7_2:61255726-61255745 Msa1067050:intron 50.0%
GGATGACCAGCTTCAAATCC+AGG + chr7_2:61255735-61255754 None:intergenic 50.0%
! GGATTTGAAGCTGGTCATCC+GGG - chr7_2:61255735-61255754 Msa1067050:intron 50.0%
TCAGACCAGGGGAACAACAA+TGG - chr7_2:61255787-61255806 Msa1067050:CDS 50.0%
CAGACCAGGGGAACAACAAT+GGG - chr7_2:61255788-61255807 Msa1067050:CDS 50.0%
AGACCAGGGGAACAACAATG+GGG - chr7_2:61255789-61255808 Msa1067050:CDS 50.0%
! TTACCCCATTGTTGTTCCCC+TGG + chr7_2:61255795-61255814 None:intergenic 50.0%
GGAACAACAATGGGGTAACC+AGG - chr7_2:61255797-61255816 Msa1067050:CDS 50.0%
AGAATGACTTAGAGCCTCCC+TGG + chr7_2:61255818-61255837 None:intergenic 50.0%
! TTCTCCTTTTCCTTTGGCGG+CGG - chr7_2:61255834-61255853 Msa1067050:CDS 50.0%
GTGTTGGATGCCTCTCAAAG+AGG + chr7_2:61256063-61256082 None:intergenic 50.0%
TCCATTATAGGGGAGGTTGC+TGG - chr7_2:61256089-61256108 Msa1067050:intron 50.0%
ACCAGCAACCTCCCCTATAA+TGG + chr7_2:61256093-61256112 None:intergenic 50.0%
GAGGTTGCTGGTACATTGCA+AGG - chr7_2:61256101-61256120 Msa1067050:intron 50.0%
! GTCTCTCTCCCTCTTTTGAC+AGG - chr7_2:61256199-61256218 Msa1067050:CDS 50.0%
! CTCTCCCTCTTTTGACAGGT+TGG - chr7_2:61256203-61256222 Msa1067050:CDS 50.0%
TATATCCGCGCAAAGCTCCA+AGG - chr7_2:61256273-61256292 Msa1067050:CDS 50.0%
AAAAGCCTTGGAGCTTTGCG+CGG + chr7_2:61256281-61256300 None:intergenic 50.0%
AAGGGTTCTCTGGTGGAGTA+CGG - chr7_2:61256326-61256345 Msa1067050:CDS 50.0%
GGTAGCCAACCTACAATAGC+TGG + chr7_2:61256883-61256902 None:intergenic 50.0%
AAATGGAAGCGGCAGCTCTA+GGG - chr7_2:61257302-61257321 Msa1067050:intron 50.0%
ACGGGTCATCATGACGGTGA+CGG + chr7_2:61254429-61254448 None:intergenic 55.0%
GGCTGAACGGGTCATCATGA+CGG + chr7_2:61254435-61254454 None:intergenic 55.0%
GACGGTGACGATCAATGTGG+TGG + chr7_2:61254456-61254475 None:intergenic 55.0%
AAGGAAACACAAGGCGGCGA+CGG + chr7_2:61254474-61254493 None:intergenic 55.0%
GCTGGGTTTAACATGCGACG+AGG + chr7_2:61255181-61255200 None:intergenic 55.0%
! TTTGAAGCTGGTCATCCGGG+AGG - chr7_2:61255738-61255757 Msa1067050:intron 55.0%
CAACAATGGGGTAACCAGGG+AGG - chr7_2:61255801-61255820 Msa1067050:CDS 55.0%
GTTGAGAGAAGCAGCACCCT+AGG + chr7_2:61256464-61256483 None:intergenic 55.0%
! CTAGAGCTGCCGCTTCCATT+TGG + chr7_2:61257303-61257322 None:intergenic 55.0%
CAAATGGAAGCGGCAGCTCT+AGG - chr7_2:61257301-61257320 Msa1067050:intron 55.0%
GGCGACGGTGACGATCAATG+TGG + chr7_2:61254459-61254478 None:intergenic 60.0%
GCTGGTCATCCGGGAGGTTA+TGG - chr7_2:61255744-61255763 Msa1067050:CDS 60.0%
GGTCATCCGGGAGGTTATGG+TGG - chr7_2:61255747-61255766 Msa1067050:CDS 60.0%
CCAGGACCACCATAACCTCC+CGG + chr7_2:61255756-61255775 None:intergenic 60.0%
GGAGGTTATGGTGGTCCTGG+TGG - chr7_2:61255756-61255775 Msa1067050:CDS 60.0%
AGAGCCGCCGCCAAAGGAAA+AGG + chr7_2:61255841-61255860 None:intergenic 60.0%
! TTTTCCTTTGGCGGCGGCTC+TGG - chr7_2:61255840-61255859 Msa1067050:CDS 60.0%
GGTTCTCTGGTGGAGTACGG+CGG - chr7_2:61256329-61256348 Msa1067050:CDS 60.0%
CCGGGAGGTTATGGTGGTCC+TGG - chr7_2:61255753-61255772 Msa1067050:CDS 65.0%
ATCACCAGAGCCGCCGCCAA+AGG + chr7_2:61255847-61255866 None:intergenic 65.0%
GGTGGAGTACGGCGGTGACT+TGG - chr7_2:61256337-61256356 Msa1067050:CDS 65.0%
! CGGCGGTGACTTGGCTGTCA+AGG - chr7_2:61256346-61256365 Msa1067050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 61254333 61257966 61254333 ID=Msa1067050;Name=Msa1067050
chr7_2 mRNA 61254333 61257966 61254333 ID=Msa1067050-mRNA-1;Parent=Msa1067050;Name=Msa1067050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=104|1|1|1|1|1|7|406|557
chr7_2 exon 61254333 61255026 61254333 ID=Msa1067050-mRNA-1:exon:12334;Parent=Msa1067050-mRNA-1
chr7_2 exon 61255117 61255470 61255117 ID=Msa1067050-mRNA-1:exon:12333;Parent=Msa1067050-mRNA-1
chr7_2 exon 61255740 61256078 61255740 ID=Msa1067050-mRNA-1:exon:12332;Parent=Msa1067050-mRNA-1
chr7_2 exon 61256166 61256635 61256166 ID=Msa1067050-mRNA-1:exon:12331;Parent=Msa1067050-mRNA-1
chr7_2 exon 61256981 61257054 61256981 ID=Msa1067050-mRNA-1:exon:12330;Parent=Msa1067050-mRNA-1
chr7_2 exon 61257147 61257202 61257147 ID=Msa1067050-mRNA-1:exon:12329;Parent=Msa1067050-mRNA-1
chr7_2 exon 61257770 61257966 61257770 ID=Msa1067050-mRNA-1:exon:12328;Parent=Msa1067050-mRNA-1
chr7_2 five_prime_UTR 61257863 61257966 61257863 ID=Msa1067050-mRNA-1:five_prime_utr;Parent=Msa1067050-mRNA-1
chr7_2 CDS 61257770 61257862 61257770 ID=Msa1067050-mRNA-1:cds;Parent=Msa1067050-mRNA-1
chr7_2 CDS 61257147 61257202 61257147 ID=Msa1067050-mRNA-1:cds;Parent=Msa1067050-mRNA-1
chr7_2 CDS 61256981 61257054 61256981 ID=Msa1067050-mRNA-1:cds;Parent=Msa1067050-mRNA-1
chr7_2 CDS 61256166 61256635 61256166 ID=Msa1067050-mRNA-1:cds;Parent=Msa1067050-mRNA-1
chr7_2 CDS 61255740 61256078 61255740 ID=Msa1067050-mRNA-1:cds;Parent=Msa1067050-mRNA-1
chr7_2 CDS 61255117 61255470 61255117 ID=Msa1067050-mRNA-1:cds;Parent=Msa1067050-mRNA-1
chr7_2 CDS 61254739 61255026 61254739 ID=Msa1067050-mRNA-1:cds;Parent=Msa1067050-mRNA-1
chr7_2 three_prime_UTR 61254333 61254738 61254333 ID=Msa1067050-mRNA-1:three_prime_utr;Parent=Msa1067050-mRNA-1
Gene Sequence

>Msa1067050

ATGATGACCCGTTCAGCCACCACATTGATCGTCACCGTCGCCGCCTTGTGTTTCCTTTTACAATCCGAAGCCAAAACAATCGACCCGTACAAGGTTCTTGGGGTTGATAAAAGTGCAAGCCAACGAGAAATTCAGAAGGCTTTTCATAAACTCTCTCTTCAATATCACCCTGACAAGAACAAGGCTAAGGGTGCACAAGAGAAGTTTGCTCAGATAAATAATGCGTACGAGATTTTATCTGATGAACAAAAGAGGAAGAATTATGATTTATATGGAGATGAGAAAGGAAACCCTGGATTTGAAGCTGGTCATCCGGGAGGTTATGGTGGTCCTGGTGGATTTAACTTCAGACCAGGGGAACAACAATGGGGTAACCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGCGGCGGCTCTGGTGATTCGAATTCTTTTGGATTTGGTTTGGATGATCTTCTTGGAAACTTTTTTGGTGATTTTGGCAGTTCATTTAGGTCTCAATCATCTCAATCTGGGTCCAAGAGTTCCCCCAAAAGTTTTAAGGCCATAAATTCAAATATCTACAAGAAAGAAATAGTTGATGAAGGAATGACTTGGCTTTTGTTATCTTATTCACCCTCTTTGAGAGGCATCCAACACTTTGAGTCCATTATAGGGGAGGTTGCTGGTACATTGCAAGGAGCTTTGAAGGTTGGAAGCATTAACTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTCGGTGTATATCCGCGCAAAGCTCCAAGGCTTTTTGTTTATTCTTACAAGGAAAATGAAAAGGGTTCTCTGGTGGAGTACGGCGGTGACTTGGCTGTCAAGGATTTGAAAGCTTTCTGTCAACAACACTTGCCAATGTTTTCAAAACGGATTGACTTGAATCAACTTGATCAATTAAGCACTGCTGAAAAGTTACCTAGGGTGCTGCTTCTCTCAACCAAAAAGAACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCGCAAACGCATTGCCTTCAGTGATGTACAGGTTCATGATGATGCTGATTCGAGAGTGAGAAAGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAACTTATTCTGAAAACAGGGGTTTCTGTAAAAGATGTAAAATCTGGTGTACAAGATCTTAGTAAGATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGGAAACATCAAGTCAGTCCAAGAAAGAACAAGCTGATTCAGAAGACAAACACATTCAGTTGCTTTCTCGGTCAAACTTTGAGGCTCTTTGTGGGGAGAGAACTCCAGTATGCGTAATTGGTGCCTTTAGATCTTCCAAAGCAAGGGAAAAGCTAGAATCACTTCTCACTTTGGTCTCACAGAAGTCCTTGTCAAGAAAACCAAATGGAAGCGGCAGCTCTAGGGACTCCATTTCCTATGGTCTCTTAGATTCTTCAAAGCAACAATCCTTTCTAAATGCATTTGACAAAACAGGTTATAAATCATCAGATAAGTTATTGATTGCCTACAAACCTCGGAAAGGGAAATTCACTGTATTTACAGGTGAAATGACAATAGAGGAAGTAGAGAATTTTATCAGCTCCGTTCTAAGCGGAGATATACCATTTAGGGAAACACATAAGAAGCCTGTACTCAAATAG
Protein sequence

>Msa1067050

MMTRSATTLIVTVAALCFLLQSEAKTIDPYKVLGVDKSASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGGYGGPGGFNFRPGEQQWGNQGGSKSFSFSFGGGSGDSNSFGFGLDDLLGNFFGDFGSSFRSQSSQSGSKSSPKSFKAINSNIYKKEIVDEGMTWLLLSYSPSLRGIQHFESIIGEVAGTLQGALKVGSINCEKEVSFCKELGVYPRKAPRLFVYSYKENEKGSLVEYGGDLAVKDLKAFCQQHLPMFSKRIDLNQLDQLSTAEKLPRVLLLSTKKNTPVIWRVLSGLYRKRIAFSDVQVHDDADSRVRKLGVDALPAIVGWLPNGEKLILKTGVSVKDVKSGVQDLSKILDSFEKVSKKETSSQSKKEQADSEDKHIQLLSRSNFEALCGERTPVCVIGAFRSSKAREKLESLLTLVSQKSLSRKPNGSGSSRDSISYGLLDSSKQQSFLNAFDKTGYKSSDKLLIAYKPRKGKFTVFTGEMTIEEVENFISSVLSGDIPFRETHKKPVLK*