AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1108950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108950 MtrunA17_Chr7g0242951 96.953 558 15 1 2 557 1 558 0.0 1098
Msa1108950 MtrunA17_Chr2g0333221 54.286 70 32 0 24 93 66 135 4.55e-17 84.3
Msa1108950 MtrunA17_Chr3g0123861 56.061 66 29 0 28 93 82 147 5.20e-17 83.6
Msa1108950 MtrunA17_Chr4g0040501 45.631 103 45 4 27 118 3 105 1.11e-16 81.6
Msa1108950 MtrunA17_Chr2g0282741 45.918 98 47 3 27 118 3 100 1.83e-16 80.9
Msa1108950 MtrunA17_Chr6g0478651 47.619 84 36 1 28 111 68 143 1.01e-15 80.1
Msa1108950 MtrunA17_Chr2g0324921 28.839 267 159 10 27 279 3 252 2.94e-15 77.4
Msa1108950 MtrunA17_Chr3g0138471 34.177 158 89 4 27 178 3 151 9.53e-15 75.5
Msa1108950 MtrunA17_Chr1g0206121 41.860 86 50 0 4 89 11 96 1.11e-14 75.1
Msa1108950 MtrunA17_Chr7g0269841 54.545 66 29 1 30 94 28 93 1.99e-14 74.7
Msa1108950 MtrunA17_Chr2g0301881 41.176 85 49 1 20 103 91 175 2.60e-14 75.9
Msa1108950 MtrunA17_Chr4g0006391 48.571 70 34 1 27 94 3 72 2.64e-14 74.3
Msa1108950 MtrunA17_Chr2g0328581 54.098 61 28 0 29 89 76 136 4.06e-14 71.6
Msa1108950 MtrunA17_Chr2g0295831 53.226 62 29 0 28 89 110 171 5.19e-14 71.6
Msa1108950 MtrunA17_Chr2g0282761 49.275 69 33 1 27 93 3 71 1.89e-13 72.0
Msa1108950 MtrunA17_Chr1g0209551 48.684 76 31 2 28 102 16 84 5.71e-13 70.9
Msa1108950 MtrunA17_Chr7g0263971 52.941 68 30 1 24 89 365 432 7.68e-13 70.9
Msa1108950 MtrunA17_Chr1g0173931 53.125 64 29 1 30 92 40 103 8.22e-13 69.3
Msa1108950 MtrunA17_Chr2g0295821 50.000 62 31 0 28 89 104 165 9.78e-13 69.7
Msa1108950 MtrunA17_Chr6g0460411 42.500 80 39 2 27 100 1 79 2.06e-12 67.0
Msa1108950 MtrunA17_Chr2g0307061 43.939 66 37 0 30 95 112 177 2.41e-12 68.6
Msa1108950 MtrunA17_Chr7g0258061 53.125 64 29 1 30 92 24 87 2.42e-12 67.8
Msa1108950 MtrunA17_Chr6g0460461 42.500 80 39 2 27 100 1 79 2.45e-12 66.6
Msa1108950 MtrunA17_Chr2g0295361 44.578 83 44 1 10 90 19 101 4.61e-12 66.6
Msa1108950 MtrunA17_Chr5g0426951 52.459 61 28 1 30 89 85 145 5.68e-12 68.2
Msa1108950 MtrunA17_Chr3g0087741 48.529 68 34 1 28 94 89 156 6.02e-12 67.8
Msa1108950 MtrunA17_Chr8g0334811 42.683 82 44 1 30 111 16 94 6.88e-12 67.8
Msa1108950 MtrunA17_Chr6g0460381 44.928 69 32 2 27 89 2 70 9.03e-12 64.3
Msa1108950 MtrunA17_Chr5g0427221 41.333 75 43 1 19 92 39 113 9.67e-12 63.2
Msa1108950 MtrunA17_Chr4g0021141 44.928 69 37 1 25 92 19 87 2.21e-11 61.6
Msa1108950 MtrunA17_Chr3g0091361 43.662 71 38 1 26 94 3 73 3.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1108950 AT3G08970.1 55.826 575 232 6 2 557 1 572 0.0 603
Msa1108950 AT3G08970.2 55.826 575 232 6 2 557 1 572 0.0 603
Msa1108950 AT5G25530.2 40.984 122 70 1 27 146 3 124 5.51e-19 89.0
Msa1108950 AT4G39960.1 53.571 84 38 1 28 111 85 167 3.28e-18 87.8
Msa1108950 AT4G39960.2 53.571 84 38 1 28 111 85 167 3.28e-18 87.8
Msa1108950 AT2G22360.1 50.000 88 39 2 18 103 79 163 6.60e-18 87.0
Msa1108950 AT1G80030.4 57.143 70 30 0 24 93 71 140 1.83e-17 85.9
Msa1108950 AT1G80030.2 57.143 70 30 0 24 93 71 140 2.10e-17 85.9
Msa1108950 AT1G80030.3 57.143 70 30 0 24 93 71 140 2.10e-17 85.9
Msa1108950 AT1G80030.1 57.143 70 30 0 24 93 71 140 2.10e-17 85.9
Msa1108950 AT2G20560.1 48.000 100 44 4 27 118 3 102 3.91e-17 83.2
Msa1108950 AT5G25530.1 38.462 130 70 2 27 146 3 132 1.36e-16 82.0
Msa1108950 AT3G62600.1 46.939 98 43 3 1 94 1 93 3.73e-16 80.5
Msa1108950 AT4G28480.2 53.333 75 31 2 27 97 3 77 5.88e-16 79.0
Msa1108950 AT5G01390.3 52.857 70 31 1 27 94 3 72 7.87e-16 77.8
Msa1108950 AT1G79940.4 37.037 108 61 2 3 103 68 175 8.26e-16 80.9
Msa1108950 AT5G01390.4 52.055 73 33 1 27 97 3 75 8.63e-16 77.4
Msa1108950 AT4G28480.1 53.333 75 31 2 27 97 3 77 1.03e-15 79.3
Msa1108950 AT1G79940.2 37.037 108 61 2 3 103 68 175 1.14e-15 80.9
Msa1108950 AT1G79940.3 37.037 108 61 2 3 103 68 175 1.14e-15 80.9
Msa1108950 AT1G79940.1 37.037 108 61 2 3 103 68 175 1.14e-15 80.9
Msa1108950 AT5G01390.2 52.857 70 31 1 27 94 3 72 1.97e-15 77.4
Msa1108950 AT3G17830.1 44.828 87 40 1 24 110 59 137 2.61e-15 79.3
Msa1108950 AT3G08910.1 39.130 138 73 4 27 156 3 137 3.04e-15 77.4
Msa1108950 AT5G01390.1 52.857 70 31 1 27 94 3 72 3.31e-15 77.4
Msa1108950 AT1G10350.1 29.078 141 78 4 27 165 3 123 2.99e-13 71.6
Msa1108950 AT4G21180.1 34.906 106 62 2 5 103 70 175 3.42e-13 72.8
Msa1108950 AT4G21180.2 38.824 85 51 1 20 103 11 95 8.98e-13 71.2
Msa1108950 AT3G12170.1 54.688 64 28 1 30 92 13 76 9.14e-13 68.9
Msa1108950 AT1G68370.1 48.684 76 31 2 28 102 17 85 1.00e-12 70.5
Msa1108950 AT5G05750.1 34.109 129 70 3 28 144 114 239 1.14e-12 69.3
Msa1108950 AT5G06910.1 49.315 73 34 2 30 99 31 103 1.34e-12 68.9
Msa1108950 AT3G47940.1 43.662 71 37 1 27 94 3 73 1.43e-12 69.7
Msa1108950 AT3G12170.2 54.688 64 28 1 30 92 49 112 1.56e-12 68.9
Msa1108950 AT1G59725.1 43.662 71 37 1 27 94 3 73 1.78e-12 69.3
Msa1108950 AT5G59610.2 48.333 60 31 0 29 88 74 133 3.00e-12 67.4
Msa1108950 AT2G41000.2 33.333 93 56 1 27 113 2 94 3.77e-12 66.2
Msa1108950 AT1G59980.2 39.241 79 47 1 21 98 16 94 4.25e-12 68.2
Msa1108950 AT5G59610.1 48.333 60 31 0 29 88 74 133 4.66e-12 67.0
Msa1108950 AT5G59610.4 48.333 60 31 0 29 88 74 133 4.66e-12 67.0
Msa1108950 AT5G49060.2 43.243 74 42 0 19 92 90 163 4.70e-12 68.2
Msa1108950 AT5G49060.1 43.243 74 42 0 19 92 90 163 4.70e-12 68.2
Msa1108950 AT5G59610.3 30.065 153 81 3 29 181 74 200 4.79e-12 67.4
Msa1108950 AT5G59610.5 30.065 153 81 3 29 181 74 200 4.79e-12 67.4
Msa1108950 AT1G59980.1 39.241 79 47 1 21 98 16 94 7.22e-12 67.8
Msa1108950 AT5G03160.1 50.000 68 32 1 24 89 366 433 9.13e-12 67.8
Msa1108950 AT3G57340.1 38.095 84 51 1 28 110 113 196 1.33e-11 67.0
Msa1108950 AT3G57340.2 38.095 84 51 1 28 110 113 196 1.33e-11 67.0
Msa1108950 AT2G35720.1 47.436 78 37 1 30 103 17 94 1.65e-11 67.4
Msa1108950 AT2G41000.1 33.333 93 56 1 27 113 2 94 2.69e-11 63.2
Msa1108950 AT5G16650.1 46.970 66 34 1 28 92 11 76 3.82e-11 61.2
Msa1108950 AT5G16650.2 46.970 66 34 1 28 92 11 76 4.43e-11 62.0

Find 153 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCAGCTTGTTCTTTCT+TGG 0.136383 7_3:-52248115 None:intergenic
TTCTTATGTGTTTCCCTAAA+TGG 0.152263 7_3:-52248609 None:intergenic
CTTGTAGATATTTGAATTTA+TGG 0.169499 7_3:-52247075 None:intergenic
ATAGAGCATTAAGGTATATT+TGG 0.196698 7_3:+52248644 Msa1108950:exon
CAACACTTTGAGTCCATTAT+AGG 0.240068 7_3:+52247164 Msa1108950:CDS
TAAGCGGAGATATACCATTT+AGG 0.240306 7_3:+52248595 Msa1108950:CDS
GATTGAAGAGTATTAATTAT+AGG 0.247090 7_3:+52248828 Msa1108950:three_prime_UTR
TCTGGTGATTCAAATTCTTT+TGG 0.248938 7_3:+52246945 Msa1108950:CDS
AGGAAGAATTATGATTTATA+TGG 0.254952 7_3:+52246780 Msa1108950:CDS
AAAAGAACACTCCTGTAATT+TGG 0.262674 7_3:+52247573 Msa1108950:CDS
CCCTTAGCCTTGTTCTTGTC+AGG 0.263130 7_3:-52246351 None:intergenic
AACACATTCAGTTGCTTTCT+CGG 0.272186 7_3:+52248145 Msa1108950:CDS
GGGAAATTCACTGTATTTAC+AGG 0.278143 7_3:+52248528 Msa1108950:CDS
AAGCGGAGATATACCATTTA+GGG 0.291674 7_3:+52248596 Msa1108950:CDS
AACACTTTGAGTCCATTATA+GGG 0.321085 7_3:+52247165 Msa1108950:CDS
AGAACTCCAGTATGCGTAAT+TGG 0.327008 7_3:+52248195 Msa1108950:CDS
CTAAATGCATTTGACAAAAC+AGG 0.333414 7_3:+52248459 Msa1108950:CDS
TTATCTGATCATCAGATAAT+TGG 0.335644 7_3:+52248882 Msa1108950:three_prime_UTR
TTTATGGCCTTAAAACTCTT+GGG 0.348537 7_3:-52247059 None:intergenic
CTTGTACGGGTCGATTGTTT+TGG 0.353222 7_3:-52245616 None:intergenic
TTTGGTTTGGATGATCTTCT+TGG 0.353735 7_3:+52246969 Msa1108950:CDS
ATTTATGGCCTTAAAACTCT+TGG 0.369064 7_3:-52247060 None:intergenic
GCTGGTCATCCGGGAGGTTA+TGG 0.370056 7_3:+52246831 Msa1108950:CDS
GTCATGAAATGATATGAAAT+AGG 0.371194 7_3:-52248958 None:intergenic
CTAAGAACACGCCAAATTAC+AGG 0.376368 7_3:-52247584 None:intergenic
GATGCACTTCCAGCTATTGT+AGG 0.379433 7_3:+52247958 Msa1108950:CDS
ATCTTATTCACCCTCTTTGA+GGG 0.379868 7_3:+52247136 Msa1108950:CDS
AGGTCTCAATCATCTCAATC+TGG 0.381249 7_3:+52247023 Msa1108950:CDS
ATCATCAGATAATTGGTAAT+AGG 0.388626 7_3:+52248889 Msa1108950:three_prime_UTR
CCTTGCTTTGGAAGATCTAA+AGG 0.391551 7_3:-52248220 None:intergenic
TTACCCCATTGTTGTTCCCC+TGG 0.394375 7_3:-52246879 None:intergenic
TTTCCCTTTCCGAGGTTTGT+AGG 0.394549 7_3:-52248511 None:intergenic
GTAATTTGGCGTGTTCTTAG+TGG 0.398833 7_3:+52247587 Msa1108950:CDS
TATCTTATTCACCCTCTTTG+AGG 0.400350 7_3:+52247135 Msa1108950:CDS
TGTACTCAAATAGAGCATTA+AGG 0.401998 7_3:+52248635 Msa1108950:exon
CTAGAGCTGCCGCTTCCATT+TGG 0.402135 7_3:-52248387 None:intergenic
AGAGCCGCCGCCAAAGGAAA+AGG 0.403748 7_3:-52246925 None:intergenic
TCAAACTTTGAGGCTCTTTG+TGG 0.404129 7_3:+52248168 Msa1108950:CDS
TGTATCATATGTACTCTTGT+TGG 0.405045 7_3:-52248717 None:intergenic
TGGATTTGAAGCTGGTCATC+CGG 0.406744 7_3:+52246821 Msa1108950:CDS
ACCAGCAACCTCCCCTATAA+TGG 0.410147 7_3:-52247177 None:intergenic
GGAAAATGAAAAGGATTCTC+TGG 0.414842 7_3:+52247403 Msa1108950:CDS
TACACTGCAAGGAGCTTTGA+AGG 0.416754 7_3:+52247199 Msa1108950:CDS
CAAATGGAAGCGGCAGCTCT+AGG 0.421742 7_3:+52248388 Msa1108950:CDS
ATCTAAGAGACCATAGGAAA+TGG 0.425174 7_3:-52248415 None:intergenic
GCTTTCTCGGTCAAACTTTG+AGG 0.426568 7_3:+52248158 Msa1108950:CDS
CAGACCAGGGGAACAACAAT+GGG 0.426872 7_3:+52246875 Msa1108950:CDS
CAAACTTTGAGGCTCTTTGT+GGG 0.430001 7_3:+52248169 Msa1108950:CDS
AAGGCACCAATTACGCATAC+TGG 0.438364 7_3:-52248201 None:intergenic
AAGTTTGCTCAGATAAATAA+TGG 0.444421 7_3:+52246384 Msa1108950:CDS
CCGGGAGGTTATGGTGGTCC+TGG 0.445625 7_3:+52246840 Msa1108950:CDS
TTTGTCAAATGCATTTAGAA+AGG 0.446085 7_3:-52248454 None:intergenic
TCTGTAAAAGATGTAAAATC+TGG 0.447024 7_3:+52248024 Msa1108950:CDS
AGAGGTGTATCTTATTGAAC+GGG 0.447427 7_3:+52248935 Msa1108950:three_prime_UTR
TTTCATATCATTTCATGACT+TGG 0.455139 7_3:+52248962 Msa1108950:three_prime_UTR
TTAATGCTCTATTTGAGTAC+AGG 0.455543 7_3:-52248633 None:intergenic
GGAACAACAATGGGGTAACC+AGG 0.458050 7_3:+52246884 Msa1108950:CDS
GATCAATGTGGTGGCTGAAC+GGG 0.458955 7_3:-52245553 None:intergenic
GGTGGAGTACGGCGGTGACT+TGG 0.466137 7_3:+52247424 Msa1108950:CDS
GCTAGAATCACTTCTCACTT+TGG 0.471450 7_3:+52248248 Msa1108950:CDS
TCCATTATAGGGGAGGTTGC+TGG 0.471727 7_3:+52247176 Msa1108950:CDS
GGTAGCCAACCTACAATAGC+TGG 0.471925 7_3:-52247967 None:intergenic
AAGACACTGCATGTATTAGT+TGG 0.476474 7_3:-52248787 None:intergenic
TTCTTACAAGGAAAATGAAA+AGG 0.476594 7_3:+52247394 Msa1108950:CDS
GGATGACCAGCTTCAAATCC+AGG 0.477797 7_3:-52246819 None:intergenic
TGCAAAACACCAAGGTTTGT+AGG 0.486752 7_3:-52248670 None:intergenic
CCTTAGCCTTGTTCTTGTCA+GGG 0.490496 7_3:-52246350 None:intergenic
GATTTATATGGAGATGAGAA+AGG 0.496080 7_3:+52246792 Msa1108950:CDS
GATTCGAGAGTGAGAAAGCT+AGG 0.497255 7_3:+52247931 Msa1108950:CDS
ATTGTAGGTTGGCTACCTAA+TGG 0.504995 7_3:+52247973 Msa1108950:CDS
TGGAAGCATTAACTGTGAAA+AGG 0.505775 7_3:+52247310 Msa1108950:CDS
CGGCGGTGACTTGGCTGTCA+AGG 0.512307 7_3:+52247433 Msa1108950:CDS
CACTTCCAGCTATTGTAGGT+TGG 0.512519 7_3:+52247962 Msa1108950:CDS
TTATGGCCTTAAAACTCTTG+GGG 0.515568 7_3:-52247058 None:intergenic
AAATGGAAGCGGCAGCTCTA+GGG 0.516656 7_3:+52248389 Msa1108950:CDS
CATTGCCTTCAGTGATGTAC+AGG 0.517426 7_3:+52247625 Msa1108950:CDS
TCTAGGGACTCCATTTCCTA+TGG 0.523006 7_3:+52248405 Msa1108950:CDS
AAAGGAAGTCTCATTCTGTA+AGG 0.525693 7_3:+52247328 Msa1108950:CDS
CGATCAATGTGGTGGCTGAA+CGG 0.527312 7_3:-52245554 None:intergenic
AAGAAAGAAATAGTTGATGA+AGG 0.528006 7_3:+52247095 Msa1108950:CDS
GTTGAGAGAAGCAGCACCCT+AGG 0.530951 7_3:-52247548 None:intergenic
ATTTGGTTACCTACAAACCT+TGG 0.531218 7_3:+52248661 Msa1108950:three_prime_UTR
TTGCCTACAAACCTCGGAAA+GGG 0.533121 7_3:+52248508 Msa1108950:CDS
CAAAACAATCGACCCGTACA+AGG 0.536128 7_3:+52245617 Msa1108950:CDS
GGAAACCCTGGATTTGAAGC+TGG 0.537781 7_3:+52246813 Msa1108950:CDS
ATTCCTTGTTAATCATGAGA+TGG 0.539933 7_3:-52248852 None:intergenic
GGTCTCAATCATCTCAATCT+GGG 0.540073 7_3:+52247024 Msa1108950:CDS
TACAGGTGAAATGACAATAG+AGG 0.544357 7_3:+52248545 Msa1108950:CDS
TCCTTGTCAAGAAAACCAAA+TGG 0.544854 7_3:+52248372 Msa1108950:CDS
TATGGCCTTAAAACTCTTGG+GGG 0.545828 7_3:-52247057 None:intergenic
CTATAATGGACTCAAAGTGT+TGG 0.546531 7_3:-52247163 None:intergenic
GGATTTGAAGCTGGTCATCC+GGG 0.546824 7_3:+52246822 Msa1108950:CDS
AAGGATTCTCTGGTGGAGTA+CGG 0.552263 7_3:+52247413 Msa1108950:CDS
TCTTATTCACCCTCTTTGAG+GGG 0.552771 7_3:+52247137 Msa1108950:CDS
TAGAGGTGTATCTTATTGAA+CGG 0.553512 7_3:+52248934 Msa1108950:three_prime_UTR
TATTGATTGCCTACAAACCT+CGG 0.555595 7_3:+52248502 Msa1108950:CDS
AGAATGACTTAGAGCCTCCC+TGG 0.555880 7_3:-52246902 None:intergenic
GTCTCATTCTGTAAGGAGCT+CGG 0.559611 7_3:+52247335 Msa1108950:CDS
CCTTTAGATCTTCCAAAGCA+AGG 0.562071 7_3:+52248220 Msa1108950:CDS
CTTTAGATCTTCCAAAGCAA+GGG 0.565533 7_3:+52248221 Msa1108950:CDS
AAAAGAAAGTAACCTTGTAC+GGG 0.565722 7_3:-52245629 None:intergenic
CTTTGAGTCCATTATAGGGG+AGG 0.569961 7_3:+52247169 Msa1108950:CDS
GGAGGTTATGGTGGTCCTGG+TGG 0.572253 7_3:+52246843 Msa1108950:CDS
TGTTGGATGCCCCTCAAAGA+GGG 0.575397 7_3:-52247146 None:intergenic
TCAGACCAGGGGAACAACAA+TGG 0.575494 7_3:+52246874 Msa1108950:CDS
AAGGAAACACAAGGCGGCGA+CGG 0.576209 7_3:-52245580 None:intergenic
CACTGCTGAAAAGTTACCTA+GGG 0.576457 7_3:+52247532 Msa1108950:CDS
TGGCTGAACGGGTCATCATA+CGG 0.576857 7_3:-52245542 None:intergenic
GCACTGCTGAAAAGTTACCT+AGG 0.578112 7_3:+52247531 Msa1108950:CDS
GGTGGATTTAACTTCAGACC+AGG 0.582161 7_3:+52246861 Msa1108950:CDS
GGAGATGAGAAAGGAAACCC+TGG 0.582670 7_3:+52246801 Msa1108950:CDS
CCCTGACAAGAACAAGGCTA+AGG 0.583292 7_3:+52246350 Msa1108950:CDS
TCAAGAAAACCAAATGGAAG+CGG 0.585318 7_3:+52248378 Msa1108950:CDS
ATCACCAGAGCCGCCGCCAA+AGG 0.586364 7_3:-52246931 None:intergenic
AAACTTTGAGGCTCTTTGTG+GGG 0.588840 7_3:+52248170 Msa1108950:CDS
TGAAGAATCTAAGAGACCAT+AGG 0.589085 7_3:-52248421 None:intergenic
AAATGAAAAGGATTCTCTGG+TGG 0.593784 7_3:+52247406 Msa1108950:CDS
CCAGGACCACCATAACCTCC+CGG 0.595008 7_3:-52246840 None:intergenic
ACAGTGAATTTCCCTTTCCG+AGG 0.599381 7_3:-52248519 None:intergenic
GAGGTTGCTGGTACACTGCA+AGG 0.600210 7_3:+52247188 Msa1108950:CDS
TGGTATATCTCCGCTTAGAA+CGG 0.601976 7_3:-52248589 None:intergenic
TGTTCGTGTAAATAAGTTCG+CGG 0.604160 7_3:-52245444 None:intergenic
ATTGCCTACAAACCTCGGAA+AGG 0.606305 7_3:+52248507 Msa1108950:CDS
AAAAGCCTTGGAGCTTTGCG+CGG 0.611357 7_3:-52247365 None:intergenic
GGTCATCCGGGAGGTTATGG+TGG 0.611379 7_3:+52246834 Msa1108950:CDS
TATATCCGCGCAAAGCTCCA+AGG 0.612102 7_3:+52247360 Msa1108950:CDS
GTTCGTGTAAATAAGTTCGC+GGG 0.614250 7_3:-52245443 None:intergenic
GCATACCTGTACATCACTGA+AGG 0.621284 7_3:-52247630 None:intergenic
ACACTTTGAGTCCATTATAG+GGG 0.621315 7_3:+52247166 Msa1108950:CDS
CCTGACAAGAACAAGGCTAA+GGG 0.624057 7_3:+52246351 Msa1108950:CDS
GATGACCAGCTTCAAATCCA+GGG 0.625923 7_3:-52246818 None:intergenic
GAACAACAATGGGGTAACCA+GGG 0.633630 7_3:+52246885 Msa1108950:CDS
GTGGATTTAACTTCAGACCA+GGG 0.636460 7_3:+52246862 Msa1108950:CDS
ATTCTATCTGCAAAACACCA+AGG 0.636927 7_3:-52248678 None:intergenic
GTGTTGGATGCCCCTCAAAG+AGG 0.638891 7_3:-52247147 None:intergenic
AACGGGTCATCATACGGTGA+CGG 0.643642 7_3:-52245536 None:intergenic
AAAACTTATTCTGAAAACAG+GGG 0.643772 7_3:+52247999 Msa1108950:CDS
GGACCATCTCATGATTAACA+AGG 0.644691 7_3:+52248849 Msa1108950:three_prime_UTR
TTCGAAATCGAAACTGAGAA+CGG 0.645684 7_3:-52245502 None:intergenic
GGTCTGAAGTTAAATCCACC+AGG 0.648334 7_3:-52246858 None:intergenic
TTTATCAGCTCCGTTCTAAG+CGG 0.648770 7_3:+52248579 Msa1108950:CDS
ATATCACCCTGACAAGAACA+AGG 0.649669 7_3:+52246344 Msa1108950:CDS
CAACAATGGGGTAACCAGGG+AGG 0.659802 7_3:+52246888 Msa1108950:CDS
GACGGTGACGATCAATGTGG+TGG 0.676126 7_3:-52245562 None:intergenic
AAGTCAACGAGAAATTCAGA+AGG 0.680585 7_3:+52246207 Msa1108950:CDS
TGGATTTAACTTCAGACCAG+GGG 0.681095 7_3:+52246863 Msa1108950:CDS
TTTGAAGCTGGTCATCCGGG+AGG 0.700469 7_3:+52246825 Msa1108950:CDS
GATTCTCTGGTGGAGTACGG+CGG 0.705028 7_3:+52247416 Msa1108950:CDS
TAGTTGATGAAGGAATGACT+TGG 0.720265 7_3:+52247105 Msa1108950:CDS
AGACCAGGGGAACAACAATG+GGG 0.745284 7_3:+52246876 Msa1108950:CDS
TTGTAAAAGGAAACACAAGG+CGG 0.763662 7_3:-52245586 None:intergenic
GGATTGTAAAAGGAAACACA+AGG 0.768636 7_3:-52245589 None:intergenic
GGCGACGGTGACGATCAATG+TGG 0.773922 7_3:-52245565 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACTTTCTTTTTTAATT+TGG + chr7_3:52245836-52245855 Msa1108950:intron 10.0%
!! AAACAAAAACAATATATATA+AGG - chr7_3:52246308-52246327 None:intergenic 10.0%
!!! TAATTTGTGAAACTTTTATT+TGG + chr7_3:52245653-52245672 Msa1108950:intron 15.0%
!!! TTATTTGGTTTTATAATTTG+AGG + chr7_3:52245668-52245687 Msa1108950:intron 15.0%
!!! TTTAGAATTGAAGTTTTTAA+AGG + chr7_3:52245933-52245952 Msa1108950:intron 15.0%
!!! TTAGAATTGAAGTTTTTAAA+GGG + chr7_3:52245934-52245953 Msa1108950:intron 15.0%
!!! TTTTGTGATTTTAATTGAAA+TGG + chr7_3:52245762-52245781 Msa1108950:intron 15.0%
!!! TTTGTGATTTTAATTGAAAT+GGG + chr7_3:52245763-52245782 Msa1108950:intron 15.0%
!! AAGATTATAAACATATATGA+TGG - chr7_3:52247779-52247798 None:intergenic 15.0%
!!! AGTAATATTGTTTTAATTAG+AGG + chr7_3:52248917-52248936 Msa1108950:three_prime_UTR 15.0%
!!! ATAATTTGAGGTTAAAATAG+CGG + chr7_3:52245680-52245699 Msa1108950:intron 20.0%
!! ATTTAATGAGTTTATTGCAT+TGG + chr7_3:52245788-52245807 Msa1108950:intron 20.0%
!!! TACTTTCTTTTTTAATTTGG+TGG + chr7_3:52245839-52245858 Msa1108950:intron 20.0%
!! TTGAGATTAAAATATGACAA+AGG + chr7_3:52245885-52245904 Msa1108950:intron 20.0%
!! TGAAAAGAGTTTATAGAAAT+AGG - chr7_3:52246500-52246519 None:intergenic 20.0%
!! GTAACTTATTATACTACTAA+GGG - chr7_3:52246656-52246675 None:intergenic 20.0%
!! AGTAACTTATTATACTACTA+AGG - chr7_3:52246657-52246676 None:intergenic 20.0%
!!! TAGTATAATAAGTTACTTTC+TGG + chr7_3:52246660-52246679 Msa1108950:intron 20.0%
!! AGGAAGAATTATGATTTATA+TGG + chr7_3:52246780-52246799 Msa1108950:CDS 20.0%
!! CTTGTAGATATTTGAATTTA+TGG - chr7_3:52247078-52247097 None:intergenic 20.0%
!!! GTATATTTCAGATTGTTTTT+TGG + chr7_3:52247822-52247841 Msa1108950:intron 20.0%
!!! AAAAACTTATTCTGAAAACA+GGG + chr7_3:52247998-52248017 Msa1108950:CDS 20.0%
!!! TTTTGAGAAAGTAAGTAAAA+AGG + chr7_3:52248077-52248096 Msa1108950:CDS 20.0%
!!! GATTGAAGAGTATTAATTAT+AGG + chr7_3:52248828-52248847 Msa1108950:three_prime_UTR 20.0%
! AAAAAGAAAGTAACCTTGTA+CGG - chr7_3:52245633-52245652 None:intergenic 25.0%
! CATCTTGTTCATTTGAATTT+GGG - chr7_3:52246083-52246102 None:intergenic 25.0%
!!! GCACATTTCAATTTTTTATC+AGG + chr7_3:52246162-52246181 Msa1108950:intron 25.0%
!!! TCAATTTTTTATCAGGTTCT+TGG + chr7_3:52246169-52246188 Msa1108950:intron 25.0%
!!! CAATTTTTTATCAGGTTCTT+GGG + chr7_3:52246170-52246189 Msa1108950:intron 25.0%
!!! AATTTTTTATCAGGTTCTTG+GGG + chr7_3:52246171-52246190 Msa1108950:intron 25.0%
!! AAGTTTGCTCAGATAAATAA+TGG + chr7_3:52246384-52246403 Msa1108950:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr7_3:52246458-52246477 None:intergenic 25.0%
!! TTTTATCTGATGAACAAAAG+AGG + chr7_3:52246760-52246779 Msa1108950:CDS 25.0%
!! GATTCAAATTCTTTTGGATT+TGG + chr7_3:52246951-52246970 Msa1108950:CDS 25.0%
!!! AAATTCTTTTGGATTTGGTT+TGG + chr7_3:52246956-52246975 Msa1108950:CDS 25.0%
!!! AAGAAAGAAATAGTTGATGA+AGG + chr7_3:52247095-52247114 Msa1108950:CDS 25.0%
!!! TCTATTGATTGTTTTGTAGT+TGG + chr7_3:52247252-52247271 Msa1108950:intron 25.0%
! TAAGAATAAACAAAAAGCCT+TGG - chr7_3:52247380-52247399 None:intergenic 25.0%
!!! GCTTTTTGTTTATTCTTACA+AGG + chr7_3:52247382-52247401 Msa1108950:CDS 25.0%
! TTCTTACAAGGAAAATGAAA+AGG + chr7_3:52247394-52247413 Msa1108950:CDS 25.0%
!! AACCTTTTACATAAAGAACT+AGG - chr7_3:52247703-52247722 None:intergenic 25.0%
!!! TATTTCAGATTGTTTTTTGG+TGG + chr7_3:52247825-52247844 Msa1108950:intron 25.0%
! GTGTATCTTGAATTATTTAC+AGG + chr7_3:52247894-52247913 Msa1108950:intron 25.0%
!! AGAATAAGTTTTTCTCCATT+AGG - chr7_3:52247991-52248010 None:intergenic 25.0%
!! GAAAAACTTATTCTGAAAAC+AGG + chr7_3:52247997-52248016 Msa1108950:CDS 25.0%
!! AAAACTTATTCTGAAAACAG+GGG + chr7_3:52247999-52248018 Msa1108950:CDS 25.0%
! TCTGTAAAAGATGTAAAATC+TGG + chr7_3:52248024-52248043 Msa1108950:CDS 25.0%
! TTTGTCAAATGCATTTAGAA+AGG - chr7_3:52248457-52248476 None:intergenic 25.0%
!! ATAGAGCATTAAGGTATATT+TGG + chr7_3:52248644-52248663 Msa1108950:exon 25.0%
! TTATCTGATCATCAGATAAT+TGG + chr7_3:52248882-52248901 Msa1108950:three_prime_UTR 25.0%
!! ATCATCAGATAATTGGTAAT+AGG + chr7_3:52248889-52248908 Msa1108950:three_prime_UTR 25.0%
! GTCATGAAATGATATGAAAT+AGG - chr7_3:52248961-52248980 None:intergenic 25.0%
! TTTCATATCATTTCATGACT+TGG + chr7_3:52248962-52248981 Msa1108950:three_prime_UTR 25.0%
AAAAGAAAGTAACCTTGTAC+GGG - chr7_3:52245632-52245651 None:intergenic 30.0%
!! TAATTTGGTGGAACTTGTTT+TGG + chr7_3:52245851-52245870 Msa1108950:intron 30.0%
! ATGACAAAGGTTGAATTTTG+AGG + chr7_3:52245898-52245917 Msa1108950:intron 30.0%
! TGACAAAGGTTGAATTTTGA+GGG + chr7_3:52245899-52245918 Msa1108950:intron 30.0%
ACTTGCAACAAAATCAGATA+AGG - chr7_3:52246050-52246069 None:intergenic 30.0%
CCATCTTGTTCATTTGAATT+TGG - chr7_3:52246084-52246103 None:intergenic 30.0%
CCAAATTCAAATGAACAAGA+TGG + chr7_3:52246081-52246100 Msa1108950:intron 30.0%
! CTACATAAAATTTCCCCTTT+TGG - chr7_3:52246109-52246128 None:intergenic 30.0%
! GTTAAGTTGTTTATCCAAAC+AGG - chr7_3:52246459-52246478 None:intergenic 30.0%
! ACTCTTTTCATAAGCTATCT+TGG + chr7_3:52246510-52246529 Msa1108950:intron 30.0%
!!! GTGTCATAAGCTGTTTTTAT+AGG + chr7_3:52246565-52246584 Msa1108950:intron 30.0%
! TAAGCATTGCAAGATTGTTA+GGG - chr7_3:52246595-52246614 None:intergenic 30.0%
! ATAAGCATTGCAAGATTGTT+AGG - chr7_3:52246596-52246615 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr7_3:52246620-52246639 None:intergenic 30.0%
!! TCTACCTATTTCTTGTTGTT+AGG + chr7_3:52246685-52246704 Msa1108950:intron 30.0%
ACATCCTAACAACAAGAAAT+AGG - chr7_3:52246692-52246711 None:intergenic 30.0%
GATTTATATGGAGATGAGAA+AGG + chr7_3:52246792-52246811 Msa1108950:CDS 30.0%
! TCTGGTGATTCAAATTCTTT+TGG + chr7_3:52246945-52246964 Msa1108950:CDS 30.0%
!!! GATCTTCTTGGAAACTTTTT+TGG + chr7_3:52246981-52247000 Msa1108950:CDS 30.0%
!!! GGAAACTTTTTTGGTGATTT+TGG + chr7_3:52246990-52247009 Msa1108950:CDS 30.0%
! TTTATGGCCTTAAAACTCTT+GGG - chr7_3:52247062-52247081 None:intergenic 30.0%
! ATTTATGGCCTTAAAACTCT+TGG - chr7_3:52247063-52247082 None:intergenic 30.0%
AACACTTTGAGTCCATTATA+GGG + chr7_3:52247165-52247184 Msa1108950:CDS 30.0%
! ACTTGCCAATGTTTTCAAAA+CGG + chr7_3:52247480-52247499 Msa1108950:CDS 30.0%
!!! TCAATCCGTTTTGAAAACAT+TGG - chr7_3:52247488-52247507 None:intergenic 30.0%
!!! AATTACAGGAGTGTTCTTTT+TGG - chr7_3:52247573-52247592 None:intergenic 30.0%
AAAAGAACACTCCTGTAATT+TGG + chr7_3:52247573-52247592 Msa1108950:CDS 30.0%
! AGCCTAGTTCTTTATGTAAA+AGG + chr7_3:52247698-52247717 Msa1108950:intron 30.0%
TAGTTAATTCATTAGTCGCA+TGG + chr7_3:52247732-52247751 Msa1108950:intron 30.0%
!! TCGTTAAAGCATTAAGTTGA+TGG - chr7_3:52248286-52248305 None:intergenic 30.0%
TATCTCGTGCAAAATCTTAA+AGG + chr7_3:52248320-52248339 Msa1108950:intron 30.0%
ATCTCGTGCAAAATCTTAAA+GGG + chr7_3:52248321-52248340 Msa1108950:intron 30.0%
CTAAATGCATTTGACAAAAC+AGG + chr7_3:52248459-52248478 Msa1108950:CDS 30.0%
TTCTTATGTGTTTCCCTAAA+TGG - chr7_3:52248612-52248631 None:intergenic 30.0%
TTAATGCTCTATTTGAGTAC+AGG - chr7_3:52248636-52248655 None:intergenic 30.0%
! TGTACTCAAATAGAGCATTA+AGG + chr7_3:52248635-52248654 Msa1108950:exon 30.0%
TGTATCATATGTACTCTTGT+TGG - chr7_3:52248720-52248739 None:intergenic 30.0%
ATTCCTTGTTAATCATGAGA+TGG - chr7_3:52248855-52248874 None:intergenic 30.0%
! TAGAGGTGTATCTTATTGAA+CGG + chr7_3:52248934-52248953 Msa1108950:three_prime_UTR 30.0%
TGTTCGTGTAAATAAGTTCG+CGG - chr7_3:52245447-52245466 None:intergenic 35.0%
!! AACTGAGAACGGTGTTTTAA+CGG - chr7_3:52245494-52245513 None:intergenic 35.0%
TTCGAAATCGAAACTGAGAA+CGG - chr7_3:52245505-52245524 None:intergenic 35.0%
TTGTAAAAGGAAACACAAGG+CGG - chr7_3:52245589-52245608 None:intergenic 35.0%
GGATTGTAAAAGGAAACACA+AGG - chr7_3:52245592-52245611 None:intergenic 35.0%
!!! TTTTGGCTTCGGATTGTAAA+AGG - chr7_3:52245602-52245621 None:intergenic 35.0%
! TTGAGGTTAAAATAGCGGAA+AGG + chr7_3:52245685-52245704 Msa1108950:intron 35.0%
! AGCGGAAAGGATAAATTTTG+AGG + chr7_3:52245698-52245717 Msa1108950:intron 35.0%
! GCGGAAAGGATAAATTTTGA+GGG + chr7_3:52245699-52245718 Msa1108950:intron 35.0%
AAGTCAACGAGAAATTCAGA+AGG + chr7_3:52246207-52246226 Msa1108950:CDS 35.0%
TCAAATAAGTCAGTCCAAAC+AGG + chr7_3:52246630-52246649 Msa1108950:intron 35.0%
! AAGTCATTCTCCTTTTCCTT+TGG + chr7_3:52246915-52246934 Msa1108950:CDS 35.0%
!! TTTGGTTTGGATGATCTTCT+TGG + chr7_3:52246969-52246988 Msa1108950:CDS 35.0%
!! GTGATTTTGGCAGTTCATTT+AGG + chr7_3:52247003-52247022 Msa1108950:CDS 35.0%
! TTATGGCCTTAAAACTCTTG+GGG - chr7_3:52247061-52247080 None:intergenic 35.0%
!! TAGTTGATGAAGGAATGACT+TGG + chr7_3:52247105-52247124 Msa1108950:CDS 35.0%
TATCTTATTCACCCTCTTTG+AGG + chr7_3:52247135-52247154 Msa1108950:CDS 35.0%
ATCTTATTCACCCTCTTTGA+GGG + chr7_3:52247136-52247155 Msa1108950:CDS 35.0%
!! CTATAATGGACTCAAAGTGT+TGG - chr7_3:52247166-52247185 None:intergenic 35.0%
CAACACTTTGAGTCCATTAT+AGG + chr7_3:52247164-52247183 Msa1108950:CDS 35.0%
ACACTTTGAGTCCATTATAG+GGG + chr7_3:52247166-52247185 Msa1108950:CDS 35.0%
!! TGGAAGCATTAACTGTGAAA+AGG + chr7_3:52247310-52247329 Msa1108950:CDS 35.0%
AAAGGAAGTCTCATTCTGTA+AGG + chr7_3:52247328-52247347 Msa1108950:CDS 35.0%
GGAAAATGAAAAGGATTCTC+TGG + chr7_3:52247403-52247422 Msa1108950:CDS 35.0%
AAATGAAAAGGATTCTCTGG+TGG + chr7_3:52247406-52247425 Msa1108950:CDS 35.0%
ATTTCTTTCTCTGCACATGT+AGG + chr7_3:52247672-52247691 Msa1108950:intron 35.0%
!!! AGATTGTTTTTTGGTGGAAG+TGG + chr7_3:52247831-52247850 Msa1108950:intron 35.0%
! TGAATCAGCTTGTTCTTTCT+TGG - chr7_3:52248118-52248137 None:intergenic 35.0%
! AACACATTCAGTTGCTTTCT+CGG + chr7_3:52248145-52248164 Msa1108950:CDS 35.0%
CTTTAGATCTTCCAAAGCAA+GGG + chr7_3:52248221-52248240 Msa1108950:CDS 35.0%
TTCTGTGAGACCTGAAATAA+CGG - chr7_3:52248351-52248370 None:intergenic 35.0%
TCCTTGTCAAGAAAACCAAA+TGG + chr7_3:52248372-52248391 Msa1108950:CDS 35.0%
!!! TCCATTTGGTTTTCTTGACA+AGG - chr7_3:52248376-52248395 None:intergenic 35.0%
TCAAGAAAACCAAATGGAAG+CGG + chr7_3:52248378-52248397 Msa1108950:CDS 35.0%
ATCTAAGAGACCATAGGAAA+TGG - chr7_3:52248418-52248437 None:intergenic 35.0%
TGAAGAATCTAAGAGACCAT+AGG - chr7_3:52248424-52248443 None:intergenic 35.0%
! TATTGATTGCCTACAAACCT+CGG + chr7_3:52248502-52248521 Msa1108950:CDS 35.0%
GGGAAATTCACTGTATTTAC+AGG + chr7_3:52248528-52248547 Msa1108950:CDS 35.0%
TACAGGTGAAATGACAATAG+AGG + chr7_3:52248545-52248564 Msa1108950:CDS 35.0%
TAAGCGGAGATATACCATTT+AGG + chr7_3:52248595-52248614 Msa1108950:CDS 35.0%
AAGCGGAGATATACCATTTA+GGG + chr7_3:52248596-52248615 Msa1108950:CDS 35.0%
ATTTGGTTACCTACAAACCT+TGG + chr7_3:52248661-52248680 Msa1108950:three_prime_UTR 35.0%
ATTCTATCTGCAAAACACCA+AGG - chr7_3:52248681-52248700 None:intergenic 35.0%
AAGACACTGCATGTATTAGT+TGG - chr7_3:52248790-52248809 None:intergenic 35.0%
! AGAGGTGTATCTTATTGAAC+GGG + chr7_3:52248935-52248954 Msa1108950:three_prime_UTR 35.0%
GTTCGTGTAAATAAGTTCGC+GGG - chr7_3:52245446-52245465 None:intergenic 40.0%
ATGAACAAGATGGCTCCAAA+AGG + chr7_3:52246091-52246110 Msa1108950:intron 40.0%
TGAACAAGATGGCTCCAAAA+GGG + chr7_3:52246092-52246111 Msa1108950:intron 40.0%
CCAAGTTATCAGAGATAGCT+GGG - chr7_3:52246285-52246304 None:intergenic 40.0%
ATATCACCCTGACAAGAACA+AGG + chr7_3:52246344-52246363 Msa1108950:CDS 40.0%
TGCCACTGGATAAAAGACTA+AGG + chr7_3:52246432-52246451 Msa1108950:intron 40.0%
TAAAAGACTAAGGCCCTGTT+TGG + chr7_3:52246442-52246461 Msa1108950:intron 40.0%
TATACTACTAAGGGCCTGTT+TGG - chr7_3:52246647-52246666 None:intergenic 40.0%
ATCTCGTACGCTGTTAAAAG+AGG - chr7_3:52246741-52246760 None:intergenic 40.0%
! GTGGATTTAACTTCAGACCA+GGG + chr7_3:52246862-52246881 Msa1108950:CDS 40.0%
! TGGATTTAACTTCAGACCAG+GGG + chr7_3:52246863-52246882 Msa1108950:CDS 40.0%
! TCATTCTCCTTTTCCTTTGG+CGG + chr7_3:52246918-52246937 Msa1108950:CDS 40.0%
AGGTCTCAATCATCTCAATC+TGG + chr7_3:52247023-52247042 Msa1108950:CDS 40.0%
GGTCTCAATCATCTCAATCT+GGG + chr7_3:52247024-52247043 Msa1108950:CDS 40.0%
! TATGGCCTTAAAACTCTTGG+GGG - chr7_3:52247060-52247079 None:intergenic 40.0%
TCTTATTCACCCTCTTTGAG+GGG + chr7_3:52247137-52247156 Msa1108950:CDS 40.0%
CACTGCTGAAAAGTTACCTA+GGG + chr7_3:52247532-52247551 Msa1108950:CDS 40.0%
CTAAGAACACGCCAAATTAC+AGG - chr7_3:52247587-52247606 None:intergenic 40.0%
GTAATTTGGCGTGTTCTTAG+TGG + chr7_3:52247587-52247606 Msa1108950:CDS 40.0%
ATGTACAGGTATGCAAGTGA+TGG + chr7_3:52247639-52247658 Msa1108950:intron 40.0%
! ATTGTAGGTTGGCTACCTAA+TGG + chr7_3:52247973-52247992 Msa1108950:CDS 40.0%
!! TCAAACTTTGAGGCTCTTTG+TGG + chr7_3:52248168-52248187 Msa1108950:CDS 40.0%
!! CAAACTTTGAGGCTCTTTGT+GGG + chr7_3:52248169-52248188 Msa1108950:CDS 40.0%
!! AAACTTTGAGGCTCTTTGTG+GGG + chr7_3:52248170-52248189 Msa1108950:CDS 40.0%
AGAACTCCAGTATGCGTAAT+TGG + chr7_3:52248195-52248214 Msa1108950:CDS 40.0%
!! CCTTGCTTTGGAAGATCTAA+AGG - chr7_3:52248223-52248242 None:intergenic 40.0%
CCTTTAGATCTTCCAAAGCA+AGG + chr7_3:52248220-52248239 Msa1108950:CDS 40.0%
!!! TTCTAGCTTTTCCCTTGCTT+TGG - chr7_3:52248235-52248254 None:intergenic 40.0%
GCTAGAATCACTTCTCACTT+TGG + chr7_3:52248248-52248267 Msa1108950:CDS 40.0%
! TTTATCAGCTCCGTTCTAAG+CGG + chr7_3:52248579-52248598 Msa1108950:CDS 40.0%
TGGTATATCTCCGCTTAGAA+CGG - chr7_3:52248592-52248611 None:intergenic 40.0%
TGCAAAACACCAAGGTTTGT+AGG - chr7_3:52248673-52248692 None:intergenic 40.0%
GGACCATCTCATGATTAACA+AGG + chr7_3:52248849-52248868 Msa1108950:three_prime_UTR 40.0%
!!! TGTTTTAACGGTCACGGTGA+CGG - chr7_3:52245482-52245501 None:intergenic 45.0%
!!! GAACGGTGTTTTAACGGTCA+CGG - chr7_3:52245488-52245507 None:intergenic 45.0%
! CTTGTACGGGTCGATTGTTT+TGG - chr7_3:52245619-52245638 None:intergenic 45.0%
CAAAACAATCGACCCGTACA+AGG + chr7_3:52245617-52245636 Msa1108950:CDS 45.0%
GAACAAGATGGCTCCAAAAG+GGG + chr7_3:52246093-52246112 Msa1108950:intron 45.0%
CCCAGCTATCTCTGATAACT+TGG + chr7_3:52246282-52246301 Msa1108950:intron 45.0%
GCCAAGTTATCAGAGATAGC+TGG - chr7_3:52246286-52246305 None:intergenic 45.0%
!! CCTTAGCCTTGTTCTTGTCA+GGG - chr7_3:52246353-52246372 None:intergenic 45.0%
CCTGACAAGAACAAGGCTAA+GGG + chr7_3:52246351-52246370 Msa1108950:CDS 45.0%
GCTTTCTCTCTATATGCCAC+TGG + chr7_3:52246418-52246437 Msa1108950:intron 45.0%
!! GGCCTTAGTCTTTTATCCAG+TGG - chr7_3:52246437-52246456 None:intergenic 45.0%
GATGACCAGCTTCAAATCCA+GGG - chr7_3:52246821-52246840 None:intergenic 45.0%
! TGGATTTGAAGCTGGTCATC+CGG + chr7_3:52246821-52246840 Msa1108950:CDS 45.0%
! GGTCTGAAGTTAAATCCACC+AGG - chr7_3:52246861-52246880 None:intergenic 45.0%
! GGTGGATTTAACTTCAGACC+AGG + chr7_3:52246861-52246880 Msa1108950:CDS 45.0%
GAACAACAATGGGGTAACCA+GGG + chr7_3:52246885-52246904 Msa1108950:CDS 45.0%
AAAACTCTTGGGGGAACTCT+TGG - chr7_3:52247051-52247070 None:intergenic 45.0%
! GAGTTCCCCCAAGAGTTTTA+AGG + chr7_3:52247052-52247071 Msa1108950:CDS 45.0%
CTTTGAGTCCATTATAGGGG+AGG + chr7_3:52247169-52247188 Msa1108950:CDS 45.0%
! TACACTGCAAGGAGCTTTGA+AGG + chr7_3:52247199-52247218 Msa1108950:CDS 45.0%
GCTTCCAACCTGTCAAAAGA+GGG - chr7_3:52247297-52247316 None:intergenic 45.0%
TGCTTCCAACCTGTCAAAAG+AGG - chr7_3:52247298-52247317 None:intergenic 45.0%
GTCTCATTCTGTAAGGAGCT+CGG + chr7_3:52247335-52247354 Msa1108950:CDS 45.0%
AAGGATTCTCTGGTGGAGTA+CGG + chr7_3:52247413-52247432 Msa1108950:CDS 45.0%
GCACTGCTGAAAAGTTACCT+AGG + chr7_3:52247531-52247550 Msa1108950:CDS 45.0%
CATTGCCTTCAGTGATGTAC+AGG + chr7_3:52247625-52247644 Msa1108950:CDS 45.0%
GCATACCTGTACATCACTGA+AGG - chr7_3:52247633-52247652 None:intergenic 45.0%
GATTCGAGAGTGAGAAAGCT+AGG + chr7_3:52247931-52247950 Msa1108950:CDS 45.0%
GATGCACTTCCAGCTATTGT+AGG + chr7_3:52247958-52247977 Msa1108950:CDS 45.0%
CACTTCCAGCTATTGTAGGT+TGG + chr7_3:52247962-52247981 Msa1108950:CDS 45.0%
GCTTTCTCGGTCAAACTTTG+AGG + chr7_3:52248158-52248177 Msa1108950:CDS 45.0%
! AAGGCACCAATTACGCATAC+TGG - chr7_3:52248204-52248223 None:intergenic 45.0%
!! AAAGGGAGCACCGTTATTTC+AGG + chr7_3:52248338-52248357 Msa1108950:intron 45.0%
TCTAGGGACTCCATTTCCTA+TGG + chr7_3:52248405-52248424 Msa1108950:CDS 45.0%
ATTGCCTACAAACCTCGGAA+AGG + chr7_3:52248507-52248526 Msa1108950:CDS 45.0%
TTGCCTACAAACCTCGGAAA+GGG + chr7_3:52248508-52248527 Msa1108950:CDS 45.0%
TTTCCCTTTCCGAGGTTTGT+AGG - chr7_3:52248514-52248533 None:intergenic 45.0%
ACAGTGAATTTCCCTTTCCG+AGG - chr7_3:52248522-52248541 None:intergenic 45.0%
!!! ATTTTAATTGAAATATTTTT+AGG + chr7_3:52245734-52245753 Msa1108950:intron 5.0%
!!! TTTTAATTGAAATATTTTTA+GGG + chr7_3:52245735-52245754 Msa1108950:intron 5.0%
AACGGGTCATCATACGGTGA+CGG - chr7_3:52245539-52245558 None:intergenic 50.0%
TGGCTGAACGGGTCATCATA+CGG - chr7_3:52245545-52245564 None:intergenic 50.0%
GATCAATGTGGTGGCTGAAC+GGG - chr7_3:52245556-52245575 None:intergenic 50.0%
CGATCAATGTGGTGGCTGAA+CGG - chr7_3:52245557-52245576 None:intergenic 50.0%
!!! CGGGTCGATTGTTTTGGCTT+CGG - chr7_3:52245613-52245632 None:intergenic 50.0%
CCCTGACAAGAACAAGGCTA+AGG + chr7_3:52246350-52246369 Msa1108950:CDS 50.0%
!! CCCTTAGCCTTGTTCTTGTC+AGG - chr7_3:52246354-52246373 None:intergenic 50.0%
GGAGATGAGAAAGGAAACCC+TGG + chr7_3:52246801-52246820 Msa1108950:CDS 50.0%
! GGAAACCCTGGATTTGAAGC+TGG + chr7_3:52246813-52246832 Msa1108950:CDS 50.0%
GGATGACCAGCTTCAAATCC+AGG - chr7_3:52246822-52246841 None:intergenic 50.0%
! GGATTTGAAGCTGGTCATCC+GGG + chr7_3:52246822-52246841 Msa1108950:CDS 50.0%
TCAGACCAGGGGAACAACAA+TGG + chr7_3:52246874-52246893 Msa1108950:CDS 50.0%
CAGACCAGGGGAACAACAAT+GGG + chr7_3:52246875-52246894 Msa1108950:CDS 50.0%
AGACCAGGGGAACAACAATG+GGG + chr7_3:52246876-52246895 Msa1108950:CDS 50.0%
! TTACCCCATTGTTGTTCCCC+TGG - chr7_3:52246882-52246901 None:intergenic 50.0%
GGAACAACAATGGGGTAACC+AGG + chr7_3:52246884-52246903 Msa1108950:CDS 50.0%
AGAATGACTTAGAGCCTCCC+TGG - chr7_3:52246905-52246924 None:intergenic 50.0%
! TTCTCCTTTTCCTTTGGCGG+CGG + chr7_3:52246921-52246940 Msa1108950:CDS 50.0%
TGTTGGATGCCCCTCAAAGA+GGG - chr7_3:52247149-52247168 None:intergenic 50.0%
TCCATTATAGGGGAGGTTGC+TGG + chr7_3:52247176-52247195 Msa1108950:CDS 50.0%
ACCAGCAACCTCCCCTATAA+TGG - chr7_3:52247180-52247199 None:intergenic 50.0%
! GTCTCTCTCCCTCTTTTGAC+AGG + chr7_3:52247286-52247305 Msa1108950:intron 50.0%
! CTCTCCCTCTTTTGACAGGT+TGG + chr7_3:52247290-52247309 Msa1108950:intron 50.0%
TATATCCGCGCAAAGCTCCA+AGG + chr7_3:52247360-52247379 Msa1108950:CDS 50.0%
AAAAGCCTTGGAGCTTTGCG+CGG - chr7_3:52247368-52247387 None:intergenic 50.0%
GGTAGCCAACCTACAATAGC+TGG - chr7_3:52247970-52247989 None:intergenic 50.0%
AAATGGAAGCGGCAGCTCTA+GGG + chr7_3:52248389-52248408 Msa1108950:CDS 50.0%
GACGGTGACGATCAATGTGG+TGG - chr7_3:52245565-52245584 None:intergenic 55.0%
AAGGAAACACAAGGCGGCGA+CGG - chr7_3:52245583-52245602 None:intergenic 55.0%
GCTGGGTTTAACATGCGACG+AGG - chr7_3:52246268-52246287 None:intergenic 55.0%
! TTTGAAGCTGGTCATCCGGG+AGG + chr7_3:52246825-52246844 Msa1108950:CDS 55.0%
CAACAATGGGGTAACCAGGG+AGG + chr7_3:52246888-52246907 Msa1108950:CDS 55.0%
GTGTTGGATGCCCCTCAAAG+AGG - chr7_3:52247150-52247169 None:intergenic 55.0%
GAGGTTGCTGGTACACTGCA+AGG + chr7_3:52247188-52247207 Msa1108950:CDS 55.0%
GATTCTCTGGTGGAGTACGG+CGG + chr7_3:52247416-52247435 Msa1108950:CDS 55.0%
GTTGAGAGAAGCAGCACCCT+AGG - chr7_3:52247551-52247570 None:intergenic 55.0%
! CTAGAGCTGCCGCTTCCATT+TGG - chr7_3:52248390-52248409 None:intergenic 55.0%
CAAATGGAAGCGGCAGCTCT+AGG + chr7_3:52248388-52248407 Msa1108950:CDS 55.0%
GGCGACGGTGACGATCAATG+TGG - chr7_3:52245568-52245587 None:intergenic 60.0%
GCTGGTCATCCGGGAGGTTA+TGG + chr7_3:52246831-52246850 Msa1108950:CDS 60.0%
GGTCATCCGGGAGGTTATGG+TGG + chr7_3:52246834-52246853 Msa1108950:CDS 60.0%
CCAGGACCACCATAACCTCC+CGG - chr7_3:52246843-52246862 None:intergenic 60.0%
GGAGGTTATGGTGGTCCTGG+TGG + chr7_3:52246843-52246862 Msa1108950:CDS 60.0%
AGAGCCGCCGCCAAAGGAAA+AGG - chr7_3:52246928-52246947 None:intergenic 60.0%
! TTTTCCTTTGGCGGCGGCTC+TGG + chr7_3:52246927-52246946 Msa1108950:CDS 60.0%
CCGGGAGGTTATGGTGGTCC+TGG + chr7_3:52246840-52246859 Msa1108950:CDS 65.0%
ATCACCAGAGCCGCCGCCAA+AGG - chr7_3:52246934-52246953 None:intergenic 65.0%
GGTGGAGTACGGCGGTGACT+TGG + chr7_3:52247424-52247443 Msa1108950:CDS 65.0%
! CGGCGGTGACTTGGCTGTCA+AGG + chr7_3:52247433-52247452 Msa1108950:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 52245443 52249053 52245443 ID=Msa1108950;Name=Msa1108950
chr7_3 mRNA 52245443 52249053 52245443 ID=Msa1108950-mRNA-1;Parent=Msa1108950;Name=Msa1108950-mRNA-1;_AED=0.04;_eAED=0.04;_QI=103|1|1|1|1|1|7|406|557
chr7_3 exon 52245443 52245638 52245443 ID=Msa1108950-mRNA-1:exon:10903;Parent=Msa1108950-mRNA-1
chr7_3 exon 52246184 52246239 52246184 ID=Msa1108950-mRNA-1:exon:10904;Parent=Msa1108950-mRNA-1
chr7_3 exon 52246332 52246405 52246332 ID=Msa1108950-mRNA-1:exon:10905;Parent=Msa1108950-mRNA-1
chr7_3 exon 52246751 52247220 52246751 ID=Msa1108950-mRNA-1:exon:10906;Parent=Msa1108950-mRNA-1
chr7_3 exon 52247308 52247646 52247308 ID=Msa1108950-mRNA-1:exon:10907;Parent=Msa1108950-mRNA-1
chr7_3 exon 52247916 52248269 52247916 ID=Msa1108950-mRNA-1:exon:10908;Parent=Msa1108950-mRNA-1
chr7_3 exon 52248360 52249053 52248360 ID=Msa1108950-mRNA-1:exon:10909;Parent=Msa1108950-mRNA-1
chr7_3 five_prime_UTR 52245443 52245545 52245443 ID=Msa1108950-mRNA-1:five_prime_utr;Parent=Msa1108950-mRNA-1
chr7_3 CDS 52245546 52245638 52245546 ID=Msa1108950-mRNA-1:cds;Parent=Msa1108950-mRNA-1
chr7_3 CDS 52246184 52246239 52246184 ID=Msa1108950-mRNA-1:cds;Parent=Msa1108950-mRNA-1
chr7_3 CDS 52246332 52246405 52246332 ID=Msa1108950-mRNA-1:cds;Parent=Msa1108950-mRNA-1
chr7_3 CDS 52246751 52247220 52246751 ID=Msa1108950-mRNA-1:cds;Parent=Msa1108950-mRNA-1
chr7_3 CDS 52247308 52247646 52247308 ID=Msa1108950-mRNA-1:cds;Parent=Msa1108950-mRNA-1
chr7_3 CDS 52247916 52248269 52247916 ID=Msa1108950-mRNA-1:cds;Parent=Msa1108950-mRNA-1
chr7_3 CDS 52248360 52248647 52248360 ID=Msa1108950-mRNA-1:cds;Parent=Msa1108950-mRNA-1
chr7_3 three_prime_UTR 52248648 52249053 52248648 ID=Msa1108950-mRNA-1:three_prime_utr;Parent=Msa1108950-mRNA-1
Gene Sequence

>Msa1108950

ATGATGACCCGTTCAGCCACCACATTGATCGTCACCGTCGCCGCCTTGTGTTTCCTTTTACAATCCGAAGCCAAAACAATCGACCCGTACAAGGTTCTTGGGGTTGATAAAAGTGCAAGTCAACGAGAAATTCAGAAGGCTTTTCATAAACTCTCTCTTCAATATCACCCTGACAAGAACAAGGCTAAGGGTGCACAAGAGAAGTTTGCTCAGATAAATAATGCGTACGAGATTTTATCTGATGAACAAAAGAGGAAGAATTATGATTTATATGGAGATGAGAAAGGAAACCCTGGATTTGAAGCTGGTCATCCGGGAGGTTATGGTGGTCCTGGTGGATTTAACTTCAGACCAGGGGAACAACAATGGGGTAACCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGCGGCGGCTCTGGTGATTCAAATTCTTTTGGATTTGGTTTGGATGATCTTCTTGGAAACTTTTTTGGTGATTTTGGCAGTTCATTTAGGTCTCAATCATCTCAATCTGGGTCCAAGAGTTCCCCCAAGAGTTTTAAGGCCATAAATTCAAATATCTACAAGAAAGAAATAGTTGATGAAGGAATGACTTGGCTTTTGTTATCTTATTCACCCTCTTTGAGGGGCATCCAACACTTTGAGTCCATTATAGGGGAGGTTGCTGGTACACTGCAAGGAGCTTTGAAGGTTGGAAGCATTAACTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTCGGTGTATATCCGCGCAAAGCTCCAAGGCTTTTTGTTTATTCTTACAAGGAAAATGAAAAGGATTCTCTGGTGGAGTACGGCGGTGACTTGGCTGTCAAGGATTTGAAAGCTTTCTGTCAACAACACTTGCCAATGTTTTCAAAACGGATTGACTTGAATCAACTTGATCAATTAAGCACTGCTGAAAAGTTACCTAGGGTGCTGCTTCTCTCAACCAAAAAGAACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCGCAAACGCATTGCCTTCAGTGATGTACAGGTTCATGATGATGCTGATTCGAGAGTGAGAAAGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAACTTATTCTGAAAACAGGGGTTTCTGTAAAAGATGTAAAATCTGGTGTACAAGATCTTAGTAAGATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGGAAACATCAAGTCAGTCCAAGAAAGAACAAGCTGATTCAGAAGACAAACACATTCAGTTGCTTTCTCGGTCAAACTTTGAGGCTCTTTGTGGGGAGAGAACTCCAGTATGCGTAATTGGTGCCTTTAGATCTTCCAAAGCAAGGGAAAAGCTAGAATCACTTCTCACTTTGGTCTCACAGAAGTCCTTGTCAAGAAAACCAAATGGAAGCGGCAGCTCTAGGGACTCCATTTCCTATGGTCTCTTAGATTCTTCAAAGCAACAATCCTTTCTAAATGCATTTGACAAAACAGGTTATAAATCATCAGATAAGTTATTGATTGCCTACAAACCTCGGAAAGGGAAATTCACTGTATTTACAGGTGAAATGACAATAGAGGAAGTAGAGAATTTTATCAGCTCCGTTCTAAGCGGAGATATACCATTTAGGGAAACACATAAGAAGCCTGTACTCAAATAG
Protein sequence

>Msa1108950

MMTRSATTLIVTVAALCFLLQSEAKTIDPYKVLGVDKSASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGGYGGPGGFNFRPGEQQWGNQGGSKSFSFSFGGGSGDSNSFGFGLDDLLGNFFGDFGSSFRSQSSQSGSKSSPKSFKAINSNIYKKEIVDEGMTWLLLSYSPSLRGIQHFESIIGEVAGTLQGALKVGSINCEKEVSFCKELGVYPRKAPRLFVYSYKENEKDSLVEYGGDLAVKDLKAFCQQHLPMFSKRIDLNQLDQLSTAEKLPRVLLLSTKKNTPVIWRVLSGLYRKRIAFSDVQVHDDADSRVRKLGVDALPAIVGWLPNGEKLILKTGVSVKDVKSGVQDLSKILDSFEKVSKKETSSQSKKEQADSEDKHIQLLSRSNFEALCGERTPVCVIGAFRSSKAREKLESLLTLVSQKSLSRKPNGSGSSRDSISYGLLDSSKQQSFLNAFDKTGYKSSDKLLIAYKPRKGKFTVFTGEMTIEEVENFISSVLSGDIPFRETHKKPVLK*