AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1152850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152850 MtrunA17_Chr7g0242951 96.953 558 15 1 2 557 1 558 0.0 1098
Msa1152850 MtrunA17_Chr2g0333221 54.286 70 32 0 24 93 66 135 4.55e-17 84.3
Msa1152850 MtrunA17_Chr3g0123861 56.061 66 29 0 28 93 82 147 5.20e-17 83.6
Msa1152850 MtrunA17_Chr4g0040501 45.631 103 45 4 27 118 3 105 1.11e-16 81.6
Msa1152850 MtrunA17_Chr2g0282741 45.918 98 47 3 27 118 3 100 1.83e-16 80.9
Msa1152850 MtrunA17_Chr6g0478651 47.619 84 36 1 28 111 68 143 1.01e-15 80.1
Msa1152850 MtrunA17_Chr2g0324921 28.839 267 159 10 27 279 3 252 2.94e-15 77.4
Msa1152850 MtrunA17_Chr3g0138471 34.177 158 89 4 27 178 3 151 9.53e-15 75.5
Msa1152850 MtrunA17_Chr1g0206121 41.860 86 50 0 4 89 11 96 1.11e-14 75.1
Msa1152850 MtrunA17_Chr7g0269841 54.545 66 29 1 30 94 28 93 1.99e-14 74.7
Msa1152850 MtrunA17_Chr2g0301881 41.176 85 49 1 20 103 91 175 2.60e-14 75.9
Msa1152850 MtrunA17_Chr4g0006391 48.571 70 34 1 27 94 3 72 2.64e-14 74.3
Msa1152850 MtrunA17_Chr2g0328581 54.098 61 28 0 29 89 76 136 4.06e-14 71.6
Msa1152850 MtrunA17_Chr2g0295831 53.226 62 29 0 28 89 110 171 5.19e-14 71.6
Msa1152850 MtrunA17_Chr2g0282761 49.275 69 33 1 27 93 3 71 1.89e-13 72.0
Msa1152850 MtrunA17_Chr1g0209551 48.684 76 31 2 28 102 16 84 5.71e-13 70.9
Msa1152850 MtrunA17_Chr7g0263971 52.941 68 30 1 24 89 365 432 7.68e-13 70.9
Msa1152850 MtrunA17_Chr1g0173931 53.125 64 29 1 30 92 40 103 8.22e-13 69.3
Msa1152850 MtrunA17_Chr2g0295821 50.000 62 31 0 28 89 104 165 9.78e-13 69.7
Msa1152850 MtrunA17_Chr6g0460411 42.500 80 39 2 27 100 1 79 2.06e-12 67.0
Msa1152850 MtrunA17_Chr2g0307061 43.939 66 37 0 30 95 112 177 2.41e-12 68.6
Msa1152850 MtrunA17_Chr7g0258061 53.125 64 29 1 30 92 24 87 2.42e-12 67.8
Msa1152850 MtrunA17_Chr6g0460461 42.500 80 39 2 27 100 1 79 2.45e-12 66.6
Msa1152850 MtrunA17_Chr2g0295361 44.578 83 44 1 10 90 19 101 4.61e-12 66.6
Msa1152850 MtrunA17_Chr5g0426951 52.459 61 28 1 30 89 85 145 5.68e-12 68.2
Msa1152850 MtrunA17_Chr3g0087741 48.529 68 34 1 28 94 89 156 6.02e-12 67.8
Msa1152850 MtrunA17_Chr8g0334811 42.683 82 44 1 30 111 16 94 6.88e-12 67.8
Msa1152850 MtrunA17_Chr6g0460381 44.928 69 32 2 27 89 2 70 9.03e-12 64.3
Msa1152850 MtrunA17_Chr5g0427221 41.333 75 43 1 19 92 39 113 9.67e-12 63.2
Msa1152850 MtrunA17_Chr4g0021141 44.928 69 37 1 25 92 19 87 2.21e-11 61.6
Msa1152850 MtrunA17_Chr3g0091361 43.662 71 38 1 26 94 3 73 3.64e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152850 AT3G08970.1 55.826 575 232 6 2 557 1 572 0.0 603
Msa1152850 AT3G08970.2 55.826 575 232 6 2 557 1 572 0.0 603
Msa1152850 AT5G25530.2 40.984 122 70 1 27 146 3 124 5.51e-19 89.0
Msa1152850 AT4G39960.1 53.571 84 38 1 28 111 85 167 3.28e-18 87.8
Msa1152850 AT4G39960.2 53.571 84 38 1 28 111 85 167 3.28e-18 87.8
Msa1152850 AT2G22360.1 50.000 88 39 2 18 103 79 163 6.60e-18 87.0
Msa1152850 AT1G80030.4 57.143 70 30 0 24 93 71 140 1.83e-17 85.9
Msa1152850 AT1G80030.2 57.143 70 30 0 24 93 71 140 2.10e-17 85.9
Msa1152850 AT1G80030.3 57.143 70 30 0 24 93 71 140 2.10e-17 85.9
Msa1152850 AT1G80030.1 57.143 70 30 0 24 93 71 140 2.10e-17 85.9
Msa1152850 AT2G20560.1 48.000 100 44 4 27 118 3 102 3.91e-17 83.2
Msa1152850 AT5G25530.1 38.462 130 70 2 27 146 3 132 1.36e-16 82.0
Msa1152850 AT3G62600.1 46.939 98 43 3 1 94 1 93 3.73e-16 80.5
Msa1152850 AT4G28480.2 53.333 75 31 2 27 97 3 77 5.88e-16 79.0
Msa1152850 AT5G01390.3 52.857 70 31 1 27 94 3 72 7.87e-16 77.8
Msa1152850 AT1G79940.4 37.037 108 61 2 3 103 68 175 8.26e-16 80.9
Msa1152850 AT5G01390.4 52.055 73 33 1 27 97 3 75 8.63e-16 77.4
Msa1152850 AT4G28480.1 53.333 75 31 2 27 97 3 77 1.03e-15 79.3
Msa1152850 AT1G79940.2 37.037 108 61 2 3 103 68 175 1.14e-15 80.9
Msa1152850 AT1G79940.3 37.037 108 61 2 3 103 68 175 1.14e-15 80.9
Msa1152850 AT1G79940.1 37.037 108 61 2 3 103 68 175 1.14e-15 80.9
Msa1152850 AT5G01390.2 52.857 70 31 1 27 94 3 72 1.97e-15 77.4
Msa1152850 AT3G17830.1 44.828 87 40 1 24 110 59 137 2.61e-15 79.3
Msa1152850 AT3G08910.1 39.130 138 73 4 27 156 3 137 3.04e-15 77.4
Msa1152850 AT5G01390.1 52.857 70 31 1 27 94 3 72 3.31e-15 77.4
Msa1152850 AT1G10350.1 29.078 141 78 4 27 165 3 123 2.99e-13 71.6
Msa1152850 AT4G21180.1 34.906 106 62 2 5 103 70 175 3.42e-13 72.8
Msa1152850 AT4G21180.2 38.824 85 51 1 20 103 11 95 8.98e-13 71.2
Msa1152850 AT3G12170.1 54.688 64 28 1 30 92 13 76 9.14e-13 68.9
Msa1152850 AT1G68370.1 48.684 76 31 2 28 102 17 85 1.00e-12 70.5
Msa1152850 AT5G05750.1 34.109 129 70 3 28 144 114 239 1.14e-12 69.3
Msa1152850 AT5G06910.1 49.315 73 34 2 30 99 31 103 1.34e-12 68.9
Msa1152850 AT3G47940.1 43.662 71 37 1 27 94 3 73 1.43e-12 69.7
Msa1152850 AT3G12170.2 54.688 64 28 1 30 92 49 112 1.56e-12 68.9
Msa1152850 AT1G59725.1 43.662 71 37 1 27 94 3 73 1.78e-12 69.3
Msa1152850 AT5G59610.2 48.333 60 31 0 29 88 74 133 3.00e-12 67.4
Msa1152850 AT2G41000.2 33.333 93 56 1 27 113 2 94 3.77e-12 66.2
Msa1152850 AT1G59980.2 39.241 79 47 1 21 98 16 94 4.25e-12 68.2
Msa1152850 AT5G59610.1 48.333 60 31 0 29 88 74 133 4.66e-12 67.0
Msa1152850 AT5G59610.4 48.333 60 31 0 29 88 74 133 4.66e-12 67.0
Msa1152850 AT5G49060.2 43.243 74 42 0 19 92 90 163 4.70e-12 68.2
Msa1152850 AT5G49060.1 43.243 74 42 0 19 92 90 163 4.70e-12 68.2
Msa1152850 AT5G59610.3 30.065 153 81 3 29 181 74 200 4.79e-12 67.4
Msa1152850 AT5G59610.5 30.065 153 81 3 29 181 74 200 4.79e-12 67.4
Msa1152850 AT1G59980.1 39.241 79 47 1 21 98 16 94 7.22e-12 67.8
Msa1152850 AT5G03160.1 50.000 68 32 1 24 89 366 433 9.13e-12 67.8
Msa1152850 AT3G57340.1 38.095 84 51 1 28 110 113 196 1.33e-11 67.0
Msa1152850 AT3G57340.2 38.095 84 51 1 28 110 113 196 1.33e-11 67.0
Msa1152850 AT2G35720.1 47.436 78 37 1 30 103 17 94 1.65e-11 67.4
Msa1152850 AT2G41000.1 33.333 93 56 1 27 113 2 94 2.69e-11 63.2
Msa1152850 AT5G16650.1 46.970 66 34 1 28 92 11 76 3.82e-11 61.2
Msa1152850 AT5G16650.2 46.970 66 34 1 28 92 11 76 4.43e-11 62.0

Find 157 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATCAGCTTGTTCTTTCT+TGG 0.136383 7_4:-38804789 None:intergenic
TTCTTATGTGTTTCCCTAAA+TGG 0.152263 7_4:-38805283 None:intergenic
CTTGTAGATATTTGAATTTA+TGG 0.169499 7_4:-38803749 None:intergenic
ATAGAGCATTAAGGTATATT+TGG 0.196698 7_4:+38805318 Msa1152850:exon
CAACACTTTGAGTCCATTAT+AGG 0.240068 7_4:+38803838 Msa1152850:CDS
TAAGCGGAGATATACCATTT+AGG 0.240306 7_4:+38805269 Msa1152850:CDS
GATTGAAGAGTATTAATTAT+AGG 0.247090 7_4:+38805502 Msa1152850:three_prime_UTR
TCTGGTGATTCAAATTCTTT+TGG 0.248938 7_4:+38803619 Msa1152850:CDS
AGGAAGAATTATGATTTATA+TGG 0.254952 7_4:+38803454 Msa1152850:CDS
AAAAGAACACTCCTGTAATT+TGG 0.262674 7_4:+38804247 Msa1152850:CDS
CCCTTAGCCTTGTTCTTGTC+AGG 0.263130 7_4:-38803025 None:intergenic
AACACATTCAGTTGCTTTCT+CGG 0.272186 7_4:+38804819 Msa1152850:CDS
GGGAAATTCACTGTATTTAC+AGG 0.278143 7_4:+38805202 Msa1152850:CDS
AAGCGGAGATATACCATTTA+GGG 0.291674 7_4:+38805270 Msa1152850:CDS
AACACTTTGAGTCCATTATA+GGG 0.321085 7_4:+38803839 Msa1152850:CDS
AGAACTCCAGTATGCGTAAT+TGG 0.327008 7_4:+38804869 Msa1152850:CDS
CTAAATGCATTTGACAAAAC+AGG 0.333414 7_4:+38805133 Msa1152850:CDS
TTATCTGATCATCAGATAAT+TGG 0.335644 7_4:+38805556 Msa1152850:three_prime_UTR
TTTATGGCCTTAAAACTCTT+GGG 0.348537 7_4:-38803733 None:intergenic
CTTGTACGGGTCGATTGTTT+TGG 0.353222 7_4:-38802269 None:intergenic
TTTGGTTTGGATGATCTTCT+TGG 0.353735 7_4:+38803643 Msa1152850:CDS
ATTTATGGCCTTAAAACTCT+TGG 0.369064 7_4:-38803734 None:intergenic
GCTGGTCATCCGGGAGGTTA+TGG 0.370056 7_4:+38803505 Msa1152850:CDS
GTCATGAAATGATATGAAAT+AGG 0.371194 7_4:-38805632 None:intergenic
CTAAGAACACGCCAAATTAC+AGG 0.376368 7_4:-38804258 None:intergenic
GATGCACTTCCAGCTATTGT+AGG 0.379433 7_4:+38804632 Msa1152850:CDS
ATCTTATTCACCCTCTTTGA+GGG 0.379868 7_4:+38803810 Msa1152850:CDS
AGGTCTCAATCATCTCAATC+TGG 0.381249 7_4:+38803697 Msa1152850:CDS
ATCATCAGATAATTGGTAAT+AGG 0.388626 7_4:+38805563 Msa1152850:three_prime_UTR
CCTTGCTTTGGAAGATCTAA+AGG 0.391551 7_4:-38804894 None:intergenic
TTACCCCATTGTTGTTCCCC+TGG 0.394375 7_4:-38803553 None:intergenic
TTTCCCTTTCCGAGGTTTGT+AGG 0.394549 7_4:-38805185 None:intergenic
GTAATTTGGCGTGTTCTTAG+TGG 0.398833 7_4:+38804261 Msa1152850:CDS
TATCTTATTCACCCTCTTTG+AGG 0.400350 7_4:+38803809 Msa1152850:CDS
TGTACTCAAATAGAGCATTA+AGG 0.401998 7_4:+38805309 Msa1152850:exon
CTAGAGCTGCCGCTTCCATT+TGG 0.402135 7_4:-38805061 None:intergenic
AACTGAGAACGGTGTATTAA+CGG 0.403170 7_4:-38802143 None:intergenic
AGAGCCGCCGCCAAAGGAAA+AGG 0.403748 7_4:-38803599 None:intergenic
TCAAACTTTGAGGCTCTTTG+TGG 0.404129 7_4:+38804842 Msa1152850:CDS
TGTATCATATGTACTCTTGT+TGG 0.405045 7_4:-38805391 None:intergenic
TGGATTTGAAGCTGGTCATC+CGG 0.406744 7_4:+38803495 Msa1152850:CDS
ACCAGCAACCTCCCCTATAA+TGG 0.410147 7_4:-38803851 None:intergenic
GGAAAATGAAAAGGATTCTC+TGG 0.414842 7_4:+38804077 Msa1152850:CDS
TACACTGCAAGGAGCTTTGA+AGG 0.416754 7_4:+38803873 Msa1152850:CDS
CAAATGGAAGCGGCAGCTCT+AGG 0.421742 7_4:+38805062 Msa1152850:CDS
ATCTAAGAGACCATAGGAAA+TGG 0.425174 7_4:-38805089 None:intergenic
GCTTTCTCGGTCAAACTTTG+AGG 0.426568 7_4:+38804832 Msa1152850:CDS
CAGACCAGGGGAACAACAAT+GGG 0.426872 7_4:+38803549 Msa1152850:CDS
CAAACTTTGAGGCTCTTTGT+GGG 0.430001 7_4:+38804843 Msa1152850:CDS
AAGGCACCAATTACGCATAC+TGG 0.438364 7_4:-38804875 None:intergenic
AAGTTTGCTCAGATAAATAA+TGG 0.444421 7_4:+38803058 Msa1152850:CDS
CCGGGAGGTTATGGTGGTCC+TGG 0.445625 7_4:+38803514 Msa1152850:CDS
TTTGTCAAATGCATTTAGAA+AGG 0.446085 7_4:-38805128 None:intergenic
TCTGTAAAAGATGTAAAATC+TGG 0.447024 7_4:+38804698 Msa1152850:CDS
AGAGGTGTATCTTATTGAAC+GGG 0.447427 7_4:+38805609 Msa1152850:three_prime_UTR
TTTCATATCATTTCATGACT+TGG 0.455139 7_4:+38805636 Msa1152850:three_prime_UTR
TTAATGCTCTATTTGAGTAC+AGG 0.455543 7_4:-38805307 None:intergenic
GGAACAACAATGGGGTAACC+AGG 0.458050 7_4:+38803558 Msa1152850:CDS
GATCAATGTGGTGGCTGAAC+GGG 0.458955 7_4:-38802206 None:intergenic
GGTGGAGTACGGCGGTGACT+TGG 0.466137 7_4:+38804098 Msa1152850:CDS
GCTAGAATCACTTCTCACTT+TGG 0.471450 7_4:+38804922 Msa1152850:CDS
TCCATTATAGGGGAGGTTGC+TGG 0.471727 7_4:+38803850 Msa1152850:CDS
GGTAGCCAACCTACAATAGC+TGG 0.471925 7_4:-38804641 None:intergenic
AAGACACTGCATGTATTAGT+TGG 0.476474 7_4:-38805461 None:intergenic
TTCTTACAAGGAAAATGAAA+AGG 0.476594 7_4:+38804068 Msa1152850:CDS
GGATGACCAGCTTCAAATCC+AGG 0.477797 7_4:-38803493 None:intergenic
TGCAAAACACCAAGGTTTGT+AGG 0.486752 7_4:-38805344 None:intergenic
CCTTAGCCTTGTTCTTGTCA+GGG 0.490496 7_4:-38803024 None:intergenic
GATTTATATGGAGATGAGAA+AGG 0.496080 7_4:+38803466 Msa1152850:CDS
GATTCGAGAGTGAGAAAGCT+AGG 0.497255 7_4:+38804605 Msa1152850:CDS
ATTGTAGGTTGGCTACCTAA+TGG 0.504995 7_4:+38804647 Msa1152850:CDS
TGGAAGCATTAACTGTGAAA+AGG 0.505775 7_4:+38803984 Msa1152850:CDS
TGTATTAACGGTCACGGTGA+CGG 0.511033 7_4:-38802131 None:intergenic
CGGCGGTGACTTGGCTGTCA+AGG 0.512307 7_4:+38804107 Msa1152850:CDS
CACTTCCAGCTATTGTAGGT+TGG 0.512519 7_4:+38804636 Msa1152850:CDS
TTATGGCCTTAAAACTCTTG+GGG 0.515568 7_4:-38803732 None:intergenic
AAATGGAAGCGGCAGCTCTA+GGG 0.516656 7_4:+38805063 Msa1152850:CDS
CATTGCCTTCAGTGATGTAC+AGG 0.517426 7_4:+38804299 Msa1152850:CDS
TCTAGGGACTCCATTTCCTA+TGG 0.523006 7_4:+38805079 Msa1152850:CDS
AAAGGAAGTCTCATTCTGTA+AGG 0.525693 7_4:+38804002 Msa1152850:CDS
CGATCAATGTGGTGGCTGAA+CGG 0.527312 7_4:-38802207 None:intergenic
AAGAAAGAAATAGTTGATGA+AGG 0.528006 7_4:+38803769 Msa1152850:CDS
GTTGAGAGAAGCAGCACCCT+AGG 0.530951 7_4:-38804222 None:intergenic
ATTTGGTTACCTACAAACCT+TGG 0.531218 7_4:+38805335 Msa1152850:three_prime_UTR
TTGCCTACAAACCTCGGAAA+GGG 0.533121 7_4:+38805182 Msa1152850:CDS
CAAAACAATCGACCCGTACA+AGG 0.536128 7_4:+38802270 Msa1152850:CDS
GGAAACCCTGGATTTGAAGC+TGG 0.537781 7_4:+38803487 Msa1152850:CDS
ATTCCTTGTTAATCATGAGA+TGG 0.539933 7_4:-38805526 None:intergenic
GGTCTCAATCATCTCAATCT+GGG 0.540073 7_4:+38803698 Msa1152850:CDS
TACAGGTGAAATGACAATAG+AGG 0.544357 7_4:+38805219 Msa1152850:CDS
TCCTTGTCAAGAAAACCAAA+TGG 0.544854 7_4:+38805046 Msa1152850:CDS
TATGGCCTTAAAACTCTTGG+GGG 0.545828 7_4:-38803731 None:intergenic
CTATAATGGACTCAAAGTGT+TGG 0.546531 7_4:-38803837 None:intergenic
GGATTTGAAGCTGGTCATCC+GGG 0.546824 7_4:+38803496 Msa1152850:CDS
AAGGATTCTCTGGTGGAGTA+CGG 0.552263 7_4:+38804087 Msa1152850:CDS
TCTTATTCACCCTCTTTGAG+GGG 0.552771 7_4:+38803811 Msa1152850:CDS
TAGAGGTGTATCTTATTGAA+CGG 0.553512 7_4:+38805608 Msa1152850:three_prime_UTR
TATTGATTGCCTACAAACCT+CGG 0.555595 7_4:+38805176 Msa1152850:CDS
AGAATGACTTAGAGCCTCCC+TGG 0.555880 7_4:-38803576 None:intergenic
GTCTCATTCTGTAAGGAGCT+CGG 0.559611 7_4:+38804009 Msa1152850:CDS
ACGGGTCATCATGACGGTGA+CGG 0.560421 7_4:-38802188 None:intergenic
CCTTTAGATCTTCCAAAGCA+AGG 0.562071 7_4:+38804894 Msa1152850:CDS
CTTTAGATCTTCCAAAGCAA+GGG 0.565533 7_4:+38804895 Msa1152850:CDS
AAAAGAAAGTAACCTTGTAC+GGG 0.565722 7_4:-38802282 None:intergenic
CTTTGAGTCCATTATAGGGG+AGG 0.569961 7_4:+38803843 Msa1152850:CDS
GGAGGTTATGGTGGTCCTGG+TGG 0.572253 7_4:+38803517 Msa1152850:CDS
TGTTGGATGCCCCTCAAAGA+GGG 0.575397 7_4:-38803820 None:intergenic
TCAGACCAGGGGAACAACAA+TGG 0.575494 7_4:+38803548 Msa1152850:CDS
AAGGAAACACAAGGCGGCGA+CGG 0.576209 7_4:-38802233 None:intergenic
CACTGCTGAAAAGTTACCTA+GGG 0.576457 7_4:+38804206 Msa1152850:CDS
GCACTGCTGAAAAGTTACCT+AGG 0.578112 7_4:+38804205 Msa1152850:CDS
GGTGGATTTAACTTCAGACC+AGG 0.582161 7_4:+38803535 Msa1152850:CDS
GGAGATGAGAAAGGAAACCC+TGG 0.582670 7_4:+38803475 Msa1152850:CDS
CCCTGACAAGAACAAGGCTA+AGG 0.583292 7_4:+38803024 Msa1152850:CDS
TCAAGAAAACCAAATGGAAG+CGG 0.585318 7_4:+38805052 Msa1152850:CDS
ATCACCAGAGCCGCCGCCAA+AGG 0.586364 7_4:-38803605 None:intergenic
AAACTTTGAGGCTCTTTGTG+GGG 0.588840 7_4:+38804844 Msa1152850:CDS
TGAAGAATCTAAGAGACCAT+AGG 0.589085 7_4:-38805095 None:intergenic
AAATGAAAAGGATTCTCTGG+TGG 0.593784 7_4:+38804080 Msa1152850:CDS
CCAGGACCACCATAACCTCC+CGG 0.595008 7_4:-38803514 None:intergenic
ACAGTGAATTTCCCTTTCCG+AGG 0.599381 7_4:-38805193 None:intergenic
GAGGTTGCTGGTACACTGCA+AGG 0.600210 7_4:+38803862 Msa1152850:CDS
TGGTATATCTCCGCTTAGAA+CGG 0.601976 7_4:-38805263 None:intergenic
ATTGCCTACAAACCTCGGAA+AGG 0.606305 7_4:+38805181 Msa1152850:CDS
TGTTCGTGTAAATAAGTTCG+CGG 0.606599 7_4:-38802096 None:intergenic
AAAAGCCTTGGAGCTTTGCG+CGG 0.611357 7_4:-38804039 None:intergenic
GGTCATCCGGGAGGTTATGG+TGG 0.611379 7_4:+38803508 Msa1152850:CDS
TATATCCGCGCAAAGCTCCA+AGG 0.612102 7_4:+38804034 Msa1152850:CDS
GTTCGTGTAAATAAGTTCGC+GGG 0.614250 7_4:-38802095 None:intergenic
GTCACGGTGACGGAATTGAT+CGG 0.620958 7_4:-38802121 None:intergenic
GCATACCTGTACATCACTGA+AGG 0.621284 7_4:-38804304 None:intergenic
ACACTTTGAGTCCATTATAG+GGG 0.621315 7_4:+38803840 Msa1152850:CDS
CCTGACAAGAACAAGGCTAA+GGG 0.624057 7_4:+38803025 Msa1152850:CDS
GATGACCAGCTTCAAATCCA+GGG 0.625923 7_4:-38803492 None:intergenic
GAACAACAATGGGGTAACCA+GGG 0.633630 7_4:+38803559 Msa1152850:CDS
GTGGATTTAACTTCAGACCA+GGG 0.636460 7_4:+38803536 Msa1152850:CDS
ATTCTATCTGCAAAACACCA+AGG 0.636927 7_4:-38805352 None:intergenic
GTGTTGGATGCCCCTCAAAG+AGG 0.638891 7_4:-38803821 None:intergenic
AAAACTTATTCTGAAAACAG+GGG 0.643772 7_4:+38804673 Msa1152850:CDS
GGACCATCTCATGATTAACA+AGG 0.644691 7_4:+38805523 Msa1152850:three_prime_UTR
TTCGAAATCGAAACTGAGAA+CGG 0.645684 7_4:-38802154 None:intergenic
GGTCTGAAGTTAAATCCACC+AGG 0.648334 7_4:-38803532 None:intergenic
TTTATCAGCTCCGTTCTAAG+CGG 0.648770 7_4:+38805253 Msa1152850:CDS
ATATCACCCTGACAAGAACA+AGG 0.649669 7_4:+38803018 Msa1152850:CDS
GGCTGAACGGGTCATCATGA+CGG 0.650028 7_4:-38802194 None:intergenic
GAACGGTGTATTAACGGTCA+CGG 0.657308 7_4:-38802137 None:intergenic
CAACAATGGGGTAACCAGGG+AGG 0.659802 7_4:+38803562 Msa1152850:CDS
GACGGTGACGATCAATGTGG+TGG 0.676126 7_4:-38802215 None:intergenic
AAGTCAACGAGAAATTCAGA+AGG 0.680585 7_4:+38802881 Msa1152850:CDS
TGGATTTAACTTCAGACCAG+GGG 0.681095 7_4:+38803537 Msa1152850:CDS
TTTGAAGCTGGTCATCCGGG+AGG 0.700469 7_4:+38803499 Msa1152850:CDS
GATTCTCTGGTGGAGTACGG+CGG 0.705028 7_4:+38804090 Msa1152850:CDS
TAGTTGATGAAGGAATGACT+TGG 0.720265 7_4:+38803779 Msa1152850:CDS
AGACCAGGGGAACAACAATG+GGG 0.745284 7_4:+38803550 Msa1152850:CDS
TTGTAAAAGGAAACACAAGG+CGG 0.763662 7_4:-38802239 None:intergenic
GGATTGTAAAAGGAAACACA+AGG 0.768636 7_4:-38802242 None:intergenic
GGCGACGGTGACGATCAATG+TGG 0.773922 7_4:-38802218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAAAACAATATATATA+AGG - chr7_4:38802982-38803001 None:intergenic 10.0%
!! TGAGATTAAAATATGAAAAA+AGG + chr7_4:38802532-38802551 Msa1152850:intron 15.0%
!! AAGATTATAAACATATATGA+TGG - chr7_4:38804453-38804472 None:intergenic 15.0%
!!! AGTAATATTGTTTTAATTAG+AGG + chr7_4:38805591-38805610 Msa1152850:three_prime_UTR 15.0%
!!! TTAATTCGTGAAACTTTTAT+TGG + chr7_4:38802305-38802324 Msa1152850:intron 20.0%
!!! TAATTCGTGAAACTTTTATT+GGG + chr7_4:38802306-38802325 Msa1152850:intron 20.0%
!!! ATAATTTGAGGTTAAAATAG+TGG + chr7_4:38802334-38802353 Msa1152850:intron 20.0%
!! TAGTTAATAGTTTATTGCAT+TGG + chr7_4:38802441-38802460 Msa1152850:intron 20.0%
!!! TGTTACTTTCTTCTTTAATT+TGG + chr7_4:38802482-38802501 Msa1152850:intron 20.0%
!! TGAAAAGAGTTTATAGAAAT+AGG - chr7_4:38803174-38803193 None:intergenic 20.0%
!! GTAACTTATTATACTACTAA+GGG - chr7_4:38803330-38803349 None:intergenic 20.0%
!! AGTAACTTATTATACTACTA+AGG - chr7_4:38803331-38803350 None:intergenic 20.0%
!!! TAGTATAATAAGTTACTTTC+TGG + chr7_4:38803334-38803353 Msa1152850:intron 20.0%
!! AGGAAGAATTATGATTTATA+TGG + chr7_4:38803454-38803473 Msa1152850:CDS 20.0%
!! CTTGTAGATATTTGAATTTA+TGG - chr7_4:38803752-38803771 None:intergenic 20.0%
!!! GTATATTTCAGATTGTTTTT+TGG + chr7_4:38804496-38804515 Msa1152850:intron 20.0%
!!! AAAAACTTATTCTGAAAACA+GGG + chr7_4:38804672-38804691 Msa1152850:CDS 20.0%
!!! TTTTGAGAAAGTAAGTAAAA+AGG + chr7_4:38804751-38804770 Msa1152850:CDS 20.0%
!!! GATTGAAGAGTATTAATTAT+AGG + chr7_4:38805502-38805521 Msa1152850:three_prime_UTR 20.0%
! AAAAAGAAAGTAACCTTGTA+CGG - chr7_4:38802286-38802305 None:intergenic 25.0%
!! TATTGGGCTTTTATAATTTG+AGG + chr7_4:38802322-38802341 Msa1152850:intron 25.0%
!! TAGTGGAAAAGGTTAAATTT+TGG + chr7_4:38802351-38802370 Msa1152850:intron 25.0%
!! AGTGGAAAAGGTTAAATTTT+GGG + chr7_4:38802352-38802371 Msa1152850:intron 25.0%
!!! TACTTTCTTCTTTAATTTGG+TGG + chr7_4:38802485-38802504 Msa1152850:intron 25.0%
!! TGAAAAAAGGATGAATTTTG+AGG + chr7_4:38802545-38802564 Msa1152850:intron 25.0%
!! GAAAAAAGGATGAATTTTGA+GGG + chr7_4:38802546-38802565 Msa1152850:intron 25.0%
!! ATTAGAATTGAAGTGTTTAG+AGG + chr7_4:38802580-38802599 Msa1152850:intron 25.0%
!! TTAGAATTGAAGTGTTTAGA+GGG + chr7_4:38802581-38802600 Msa1152850:intron 25.0%
! CATCTTGTTCATTTGAATTT+GGG - chr7_4:38802757-38802776 None:intergenic 25.0%
!!! GCACATTTCAATTTTTTATC+AGG + chr7_4:38802836-38802855 Msa1152850:intron 25.0%
!!! TCAATTTTTTATCAGGTTCT+TGG + chr7_4:38802843-38802862 Msa1152850:intron 25.0%
!!! CAATTTTTTATCAGGTTCTT+GGG + chr7_4:38802844-38802863 Msa1152850:intron 25.0%
!!! AATTTTTTATCAGGTTCTTG+GGG + chr7_4:38802845-38802864 Msa1152850:intron 25.0%
!! AAGTTTGCTCAGATAAATAA+TGG + chr7_4:38803058-38803077 Msa1152850:CDS 25.0%
!! TTAAGTTGTTTATCCAAACA+GGG - chr7_4:38803132-38803151 None:intergenic 25.0%
!! TTTTATCTGATGAACAAAAG+AGG + chr7_4:38803434-38803453 Msa1152850:CDS 25.0%
!! GATTCAAATTCTTTTGGATT+TGG + chr7_4:38803625-38803644 Msa1152850:CDS 25.0%
!!! AAATTCTTTTGGATTTGGTT+TGG + chr7_4:38803630-38803649 Msa1152850:CDS 25.0%
!!! AAGAAAGAAATAGTTGATGA+AGG + chr7_4:38803769-38803788 Msa1152850:CDS 25.0%
!!! TCTATTGATTGTTTTGTAGT+TGG + chr7_4:38803926-38803945 Msa1152850:intron 25.0%
! TAAGAATAAACAAAAAGCCT+TGG - chr7_4:38804054-38804073 None:intergenic 25.0%
!!! GCTTTTTGTTTATTCTTACA+AGG + chr7_4:38804056-38804075 Msa1152850:CDS 25.0%
! TTCTTACAAGGAAAATGAAA+AGG + chr7_4:38804068-38804087 Msa1152850:CDS 25.0%
!! AACCTTTTACATAAAGAACT+AGG - chr7_4:38804377-38804396 None:intergenic 25.0%
!!! TATTTCAGATTGTTTTTTGG+TGG + chr7_4:38804499-38804518 Msa1152850:intron 25.0%
! GTGTATCTTGAATTATTTAC+AGG + chr7_4:38804568-38804587 Msa1152850:intron 25.0%
!! AGAATAAGTTTTTCTCCATT+AGG - chr7_4:38804665-38804684 None:intergenic 25.0%
!! GAAAAACTTATTCTGAAAAC+AGG + chr7_4:38804671-38804690 Msa1152850:CDS 25.0%
!! AAAACTTATTCTGAAAACAG+GGG + chr7_4:38804673-38804692 Msa1152850:CDS 25.0%
! TCTGTAAAAGATGTAAAATC+TGG + chr7_4:38804698-38804717 Msa1152850:CDS 25.0%
! TTTGTCAAATGCATTTAGAA+AGG - chr7_4:38805131-38805150 None:intergenic 25.0%
!! ATAGAGCATTAAGGTATATT+TGG + chr7_4:38805318-38805337 Msa1152850:exon 25.0%
! TTATCTGATCATCAGATAAT+TGG + chr7_4:38805556-38805575 Msa1152850:three_prime_UTR 25.0%
!! ATCATCAGATAATTGGTAAT+AGG + chr7_4:38805563-38805582 Msa1152850:three_prime_UTR 25.0%
! GTCATGAAATGATATGAAAT+AGG - chr7_4:38805635-38805654 None:intergenic 25.0%
! TTTCATATCATTTCATGACT+TGG + chr7_4:38805636-38805655 Msa1152850:three_prime_UTR 25.0%
AAAAGAAAGTAACCTTGTAC+GGG - chr7_4:38802285-38802304 None:intergenic 30.0%
! TGAGGTTAAAATAGTGGAAA+AGG + chr7_4:38802340-38802359 Msa1152850:intron 30.0%
! GTGGAAAAGGTTAAATTTTG+GGG + chr7_4:38802353-38802372 Msa1152850:intron 30.0%
! TGGAAAAGGTTAAATTTTGG+GGG + chr7_4:38802354-38802373 Msa1152850:intron 30.0%
ATTGCATTGGATTGCATTAT+TGG + chr7_4:38802454-38802473 Msa1152850:intron 30.0%
TTGCATTGGATTGCATTATT+GGG + chr7_4:38802455-38802474 Msa1152850:intron 30.0%
!! TAATTTGGTGGAACTTGTTT+TGG + chr7_4:38802497-38802516 Msa1152850:intron 30.0%
CCATCTTGTTCATTTGAATT+TGG - chr7_4:38802758-38802777 None:intergenic 30.0%
CCAAATTCAAATGAACAAGA+TGG + chr7_4:38802755-38802774 Msa1152850:intron 30.0%
! GTTAAGTTGTTTATCCAAAC+AGG - chr7_4:38803133-38803152 None:intergenic 30.0%
! ACTCTTTTCATAAGCTATCT+TGG + chr7_4:38803184-38803203 Msa1152850:intron 30.0%
!!! GTGTCATAAGCTGTTTTTAT+AGG + chr7_4:38803239-38803258 Msa1152850:intron 30.0%
! TAAGCATTGCAAGATTGTTA+GGG - chr7_4:38803269-38803288 None:intergenic 30.0%
! ATAAGCATTGCAAGATTGTT+AGG - chr7_4:38803270-38803289 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - chr7_4:38803294-38803313 None:intergenic 30.0%
!! TCTACCTATTTCTTGTTGTT+AGG + chr7_4:38803359-38803378 Msa1152850:intron 30.0%
ACATCCTAACAACAAGAAAT+AGG - chr7_4:38803366-38803385 None:intergenic 30.0%
GATTTATATGGAGATGAGAA+AGG + chr7_4:38803466-38803485 Msa1152850:CDS 30.0%
! TCTGGTGATTCAAATTCTTT+TGG + chr7_4:38803619-38803638 Msa1152850:CDS 30.0%
!!! GATCTTCTTGGAAACTTTTT+TGG + chr7_4:38803655-38803674 Msa1152850:CDS 30.0%
!!! GGAAACTTTTTTGGTGATTT+TGG + chr7_4:38803664-38803683 Msa1152850:CDS 30.0%
! TTTATGGCCTTAAAACTCTT+GGG - chr7_4:38803736-38803755 None:intergenic 30.0%
! ATTTATGGCCTTAAAACTCT+TGG - chr7_4:38803737-38803756 None:intergenic 30.0%
AACACTTTGAGTCCATTATA+GGG + chr7_4:38803839-38803858 Msa1152850:CDS 30.0%
! ACTTGCCAATGTTTTCAAAA+CGG + chr7_4:38804154-38804173 Msa1152850:CDS 30.0%
!!! TCAATCCGTTTTGAAAACAT+TGG - chr7_4:38804162-38804181 None:intergenic 30.0%
!!! AATTACAGGAGTGTTCTTTT+TGG - chr7_4:38804247-38804266 None:intergenic 30.0%
AAAAGAACACTCCTGTAATT+TGG + chr7_4:38804247-38804266 Msa1152850:CDS 30.0%
! AGCCTAGTTCTTTATGTAAA+AGG + chr7_4:38804372-38804391 Msa1152850:intron 30.0%
TAGTTAATTCATTAGTCGCA+TGG + chr7_4:38804406-38804425 Msa1152850:intron 30.0%
!! TCGTTAAAGCATTAAGTTGA+TGG - chr7_4:38804960-38804979 None:intergenic 30.0%
TATCTCGTGCAAAATCTTAA+AGG + chr7_4:38804994-38805013 Msa1152850:intron 30.0%
ATCTCGTGCAAAATCTTAAA+GGG + chr7_4:38804995-38805014 Msa1152850:intron 30.0%
CTAAATGCATTTGACAAAAC+AGG + chr7_4:38805133-38805152 Msa1152850:CDS 30.0%
TTCTTATGTGTTTCCCTAAA+TGG - chr7_4:38805286-38805305 None:intergenic 30.0%
TTAATGCTCTATTTGAGTAC+AGG - chr7_4:38805310-38805329 None:intergenic 30.0%
! TGTACTCAAATAGAGCATTA+AGG + chr7_4:38805309-38805328 Msa1152850:exon 30.0%
TGTATCATATGTACTCTTGT+TGG - chr7_4:38805394-38805413 None:intergenic 30.0%
ATTCCTTGTTAATCATGAGA+TGG - chr7_4:38805529-38805548 None:intergenic 30.0%
! TAGAGGTGTATCTTATTGAA+CGG + chr7_4:38805608-38805627 Msa1152850:three_prime_UTR 30.0%
TGTTCGTGTAAATAAGTTCG+CGG - chr7_4:38802099-38802118 None:intergenic 35.0%
AACTGAGAACGGTGTATTAA+CGG - chr7_4:38802146-38802165 None:intergenic 35.0%
TTCGAAATCGAAACTGAGAA+CGG - chr7_4:38802157-38802176 None:intergenic 35.0%
TTGTAAAAGGAAACACAAGG+CGG - chr7_4:38802242-38802261 None:intergenic 35.0%
GGATTGTAAAAGGAAACACA+AGG - chr7_4:38802245-38802264 None:intergenic 35.0%
!!! TTTTGGCTTCGGATTGTAAA+AGG - chr7_4:38802255-38802274 None:intergenic 35.0%
! CTACATAAAATTCCCCCTTT+TGG - chr7_4:38802783-38802802 None:intergenic 35.0%
AAGTCAACGAGAAATTCAGA+AGG + chr7_4:38802881-38802900 Msa1152850:CDS 35.0%
TCAAATAAGTCAGTCCAAAC+AGG + chr7_4:38803304-38803323 Msa1152850:intron 35.0%
! AAGTCATTCTCCTTTTCCTT+TGG + chr7_4:38803589-38803608 Msa1152850:CDS 35.0%
!! TTTGGTTTGGATGATCTTCT+TGG + chr7_4:38803643-38803662 Msa1152850:CDS 35.0%
!! GTGATTTTGGCAGTTCATTT+AGG + chr7_4:38803677-38803696 Msa1152850:CDS 35.0%
! TTATGGCCTTAAAACTCTTG+GGG - chr7_4:38803735-38803754 None:intergenic 35.0%
!! TAGTTGATGAAGGAATGACT+TGG + chr7_4:38803779-38803798 Msa1152850:CDS 35.0%
TATCTTATTCACCCTCTTTG+AGG + chr7_4:38803809-38803828 Msa1152850:CDS 35.0%
ATCTTATTCACCCTCTTTGA+GGG + chr7_4:38803810-38803829 Msa1152850:CDS 35.0%
!! CTATAATGGACTCAAAGTGT+TGG - chr7_4:38803840-38803859 None:intergenic 35.0%
CAACACTTTGAGTCCATTAT+AGG + chr7_4:38803838-38803857 Msa1152850:CDS 35.0%
ACACTTTGAGTCCATTATAG+GGG + chr7_4:38803840-38803859 Msa1152850:CDS 35.0%
!! TGGAAGCATTAACTGTGAAA+AGG + chr7_4:38803984-38804003 Msa1152850:CDS 35.0%
AAAGGAAGTCTCATTCTGTA+AGG + chr7_4:38804002-38804021 Msa1152850:CDS 35.0%
GGAAAATGAAAAGGATTCTC+TGG + chr7_4:38804077-38804096 Msa1152850:CDS 35.0%
AAATGAAAAGGATTCTCTGG+TGG + chr7_4:38804080-38804099 Msa1152850:CDS 35.0%
ATTTCTTTCTCTGCACATGT+AGG + chr7_4:38804346-38804365 Msa1152850:intron 35.0%
!!! AGATTGTTTTTTGGTGGAAG+TGG + chr7_4:38804505-38804524 Msa1152850:intron 35.0%
! TGAATCAGCTTGTTCTTTCT+TGG - chr7_4:38804792-38804811 None:intergenic 35.0%
! AACACATTCAGTTGCTTTCT+CGG + chr7_4:38804819-38804838 Msa1152850:CDS 35.0%
CTTTAGATCTTCCAAAGCAA+GGG + chr7_4:38804895-38804914 Msa1152850:CDS 35.0%
TTCTGTGAGACCTGAAATAA+CGG - chr7_4:38805025-38805044 None:intergenic 35.0%
TCCTTGTCAAGAAAACCAAA+TGG + chr7_4:38805046-38805065 Msa1152850:CDS 35.0%
!!! TCCATTTGGTTTTCTTGACA+AGG - chr7_4:38805050-38805069 None:intergenic 35.0%
TCAAGAAAACCAAATGGAAG+CGG + chr7_4:38805052-38805071 Msa1152850:CDS 35.0%
ATCTAAGAGACCATAGGAAA+TGG - chr7_4:38805092-38805111 None:intergenic 35.0%
TGAAGAATCTAAGAGACCAT+AGG - chr7_4:38805098-38805117 None:intergenic 35.0%
! TATTGATTGCCTACAAACCT+CGG + chr7_4:38805176-38805195 Msa1152850:CDS 35.0%
GGGAAATTCACTGTATTTAC+AGG + chr7_4:38805202-38805221 Msa1152850:CDS 35.0%
TACAGGTGAAATGACAATAG+AGG + chr7_4:38805219-38805238 Msa1152850:CDS 35.0%
TAAGCGGAGATATACCATTT+AGG + chr7_4:38805269-38805288 Msa1152850:CDS 35.0%
AAGCGGAGATATACCATTTA+GGG + chr7_4:38805270-38805289 Msa1152850:CDS 35.0%
ATTTGGTTACCTACAAACCT+TGG + chr7_4:38805335-38805354 Msa1152850:three_prime_UTR 35.0%
ATTCTATCTGCAAAACACCA+AGG - chr7_4:38805355-38805374 None:intergenic 35.0%
AAGACACTGCATGTATTAGT+TGG - chr7_4:38805464-38805483 None:intergenic 35.0%
! AGAGGTGTATCTTATTGAAC+GGG + chr7_4:38805609-38805628 Msa1152850:three_prime_UTR 35.0%
GTTCGTGTAAATAAGTTCGC+GGG - chr7_4:38802098-38802117 None:intergenic 40.0%
ATGAACAAGATGGCTCCAAA+AGG + chr7_4:38802765-38802784 Msa1152850:intron 40.0%
TGAACAAGATGGCTCCAAAA+GGG + chr7_4:38802766-38802785 Msa1152850:intron 40.0%
CCAAGTTATCAGAGATAGCT+GGG - chr7_4:38802959-38802978 None:intergenic 40.0%
ATATCACCCTGACAAGAACA+AGG + chr7_4:38803018-38803037 Msa1152850:CDS 40.0%
TGCCACTGGATAAAAGACTA+AGG + chr7_4:38803106-38803125 Msa1152850:intron 40.0%
TAAAAGACTAAGGCCCTGTT+TGG + chr7_4:38803116-38803135 Msa1152850:intron 40.0%
TATACTACTAAGGGCCTGTT+TGG - chr7_4:38803321-38803340 None:intergenic 40.0%
ATCTCGTACGCTGTTAAAAG+AGG - chr7_4:38803415-38803434 None:intergenic 40.0%
! GTGGATTTAACTTCAGACCA+GGG + chr7_4:38803536-38803555 Msa1152850:CDS 40.0%
! TGGATTTAACTTCAGACCAG+GGG + chr7_4:38803537-38803556 Msa1152850:CDS 40.0%
! TCATTCTCCTTTTCCTTTGG+CGG + chr7_4:38803592-38803611 Msa1152850:CDS 40.0%
AGGTCTCAATCATCTCAATC+TGG + chr7_4:38803697-38803716 Msa1152850:CDS 40.0%
GGTCTCAATCATCTCAATCT+GGG + chr7_4:38803698-38803717 Msa1152850:CDS 40.0%
! TATGGCCTTAAAACTCTTGG+GGG - chr7_4:38803734-38803753 None:intergenic 40.0%
TCTTATTCACCCTCTTTGAG+GGG + chr7_4:38803811-38803830 Msa1152850:CDS 40.0%
CACTGCTGAAAAGTTACCTA+GGG + chr7_4:38804206-38804225 Msa1152850:CDS 40.0%
CTAAGAACACGCCAAATTAC+AGG - chr7_4:38804261-38804280 None:intergenic 40.0%
GTAATTTGGCGTGTTCTTAG+TGG + chr7_4:38804261-38804280 Msa1152850:CDS 40.0%
ATGTACAGGTATGCAAGTGA+TGG + chr7_4:38804313-38804332 Msa1152850:intron 40.0%
! ATTGTAGGTTGGCTACCTAA+TGG + chr7_4:38804647-38804666 Msa1152850:CDS 40.0%
!! TCAAACTTTGAGGCTCTTTG+TGG + chr7_4:38804842-38804861 Msa1152850:CDS 40.0%
!! CAAACTTTGAGGCTCTTTGT+GGG + chr7_4:38804843-38804862 Msa1152850:CDS 40.0%
!! AAACTTTGAGGCTCTTTGTG+GGG + chr7_4:38804844-38804863 Msa1152850:CDS 40.0%
AGAACTCCAGTATGCGTAAT+TGG + chr7_4:38804869-38804888 Msa1152850:CDS 40.0%
!! CCTTGCTTTGGAAGATCTAA+AGG - chr7_4:38804897-38804916 None:intergenic 40.0%
CCTTTAGATCTTCCAAAGCA+AGG + chr7_4:38804894-38804913 Msa1152850:CDS 40.0%
!!! TTCTAGCTTTTCCCTTGCTT+TGG - chr7_4:38804909-38804928 None:intergenic 40.0%
GCTAGAATCACTTCTCACTT+TGG + chr7_4:38804922-38804941 Msa1152850:CDS 40.0%
! TTTATCAGCTCCGTTCTAAG+CGG + chr7_4:38805253-38805272 Msa1152850:CDS 40.0%
TGGTATATCTCCGCTTAGAA+CGG - chr7_4:38805266-38805285 None:intergenic 40.0%
TGCAAAACACCAAGGTTTGT+AGG - chr7_4:38805347-38805366 None:intergenic 40.0%
GGACCATCTCATGATTAACA+AGG + chr7_4:38805523-38805542 Msa1152850:three_prime_UTR 40.0%
TGTATTAACGGTCACGGTGA+CGG - chr7_4:38802134-38802153 None:intergenic 45.0%
GAACGGTGTATTAACGGTCA+CGG - chr7_4:38802140-38802159 None:intergenic 45.0%
! CTTGTACGGGTCGATTGTTT+TGG - chr7_4:38802272-38802291 None:intergenic 45.0%
CAAAACAATCGACCCGTACA+AGG + chr7_4:38802270-38802289 Msa1152850:CDS 45.0%
GAACAAGATGGCTCCAAAAG+GGG + chr7_4:38802767-38802786 Msa1152850:intron 45.0%
AACAAGATGGCTCCAAAAGG+GGG + chr7_4:38802768-38802787 Msa1152850:intron 45.0%
CCCAGCTATCTCTGATAACT+TGG + chr7_4:38802956-38802975 Msa1152850:intron 45.0%
GCCAAGTTATCAGAGATAGC+TGG - chr7_4:38802960-38802979 None:intergenic 45.0%
!! CCTTAGCCTTGTTCTTGTCA+GGG - chr7_4:38803027-38803046 None:intergenic 45.0%
CCTGACAAGAACAAGGCTAA+GGG + chr7_4:38803025-38803044 Msa1152850:CDS 45.0%
GCTTTCTCTCTATATGCCAC+TGG + chr7_4:38803092-38803111 Msa1152850:intron 45.0%
!! GGCCTTAGTCTTTTATCCAG+TGG - chr7_4:38803111-38803130 None:intergenic 45.0%
GATGACCAGCTTCAAATCCA+GGG - chr7_4:38803495-38803514 None:intergenic 45.0%
! TGGATTTGAAGCTGGTCATC+CGG + chr7_4:38803495-38803514 Msa1152850:CDS 45.0%
! GGTCTGAAGTTAAATCCACC+AGG - chr7_4:38803535-38803554 None:intergenic 45.0%
! GGTGGATTTAACTTCAGACC+AGG + chr7_4:38803535-38803554 Msa1152850:CDS 45.0%
GAACAACAATGGGGTAACCA+GGG + chr7_4:38803559-38803578 Msa1152850:CDS 45.0%
AAAACTCTTGGGGGAACTCT+TGG - chr7_4:38803725-38803744 None:intergenic 45.0%
! GAGTTCCCCCAAGAGTTTTA+AGG + chr7_4:38803726-38803745 Msa1152850:CDS 45.0%
CTTTGAGTCCATTATAGGGG+AGG + chr7_4:38803843-38803862 Msa1152850:CDS 45.0%
! TACACTGCAAGGAGCTTTGA+AGG + chr7_4:38803873-38803892 Msa1152850:CDS 45.0%
GCTTCCAACCTGTCAAAAGA+GGG - chr7_4:38803971-38803990 None:intergenic 45.0%
TGCTTCCAACCTGTCAAAAG+AGG - chr7_4:38803972-38803991 None:intergenic 45.0%
GTCTCATTCTGTAAGGAGCT+CGG + chr7_4:38804009-38804028 Msa1152850:CDS 45.0%
AAGGATTCTCTGGTGGAGTA+CGG + chr7_4:38804087-38804106 Msa1152850:CDS 45.0%
GCACTGCTGAAAAGTTACCT+AGG + chr7_4:38804205-38804224 Msa1152850:CDS 45.0%
CATTGCCTTCAGTGATGTAC+AGG + chr7_4:38804299-38804318 Msa1152850:CDS 45.0%
GCATACCTGTACATCACTGA+AGG - chr7_4:38804307-38804326 None:intergenic 45.0%
GATTCGAGAGTGAGAAAGCT+AGG + chr7_4:38804605-38804624 Msa1152850:CDS 45.0%
GATGCACTTCCAGCTATTGT+AGG + chr7_4:38804632-38804651 Msa1152850:CDS 45.0%
CACTTCCAGCTATTGTAGGT+TGG + chr7_4:38804636-38804655 Msa1152850:CDS 45.0%
GCTTTCTCGGTCAAACTTTG+AGG + chr7_4:38804832-38804851 Msa1152850:CDS 45.0%
! AAGGCACCAATTACGCATAC+TGG - chr7_4:38804878-38804897 None:intergenic 45.0%
!! AAAGGGAGCACCGTTATTTC+AGG + chr7_4:38805012-38805031 Msa1152850:intron 45.0%
TCTAGGGACTCCATTTCCTA+TGG + chr7_4:38805079-38805098 Msa1152850:CDS 45.0%
ATTGCCTACAAACCTCGGAA+AGG + chr7_4:38805181-38805200 Msa1152850:CDS 45.0%
TTGCCTACAAACCTCGGAAA+GGG + chr7_4:38805182-38805201 Msa1152850:CDS 45.0%
TTTCCCTTTCCGAGGTTTGT+AGG - chr7_4:38805188-38805207 None:intergenic 45.0%
ACAGTGAATTTCCCTTTCCG+AGG - chr7_4:38805196-38805215 None:intergenic 45.0%
!!! ATTTTAATTGAAATATTTTT+AGG + chr7_4:38802389-38802408 Msa1152850:intron 5.0%
!!! TTTTAATTGAAATATTTTTA+GGG + chr7_4:38802390-38802409 Msa1152850:intron 5.0%
!! GTCACGGTGACGGAATTGAT+CGG - chr7_4:38802124-38802143 None:intergenic 50.0%
GATCAATGTGGTGGCTGAAC+GGG - chr7_4:38802209-38802228 None:intergenic 50.0%
CGATCAATGTGGTGGCTGAA+CGG - chr7_4:38802210-38802229 None:intergenic 50.0%
!!! CGGGTCGATTGTTTTGGCTT+CGG - chr7_4:38802266-38802285 None:intergenic 50.0%
CCCTGACAAGAACAAGGCTA+AGG + chr7_4:38803024-38803043 Msa1152850:CDS 50.0%
!! CCCTTAGCCTTGTTCTTGTC+AGG - chr7_4:38803028-38803047 None:intergenic 50.0%
GGAGATGAGAAAGGAAACCC+TGG + chr7_4:38803475-38803494 Msa1152850:CDS 50.0%
! GGAAACCCTGGATTTGAAGC+TGG + chr7_4:38803487-38803506 Msa1152850:CDS 50.0%
GGATGACCAGCTTCAAATCC+AGG - chr7_4:38803496-38803515 None:intergenic 50.0%
! GGATTTGAAGCTGGTCATCC+GGG + chr7_4:38803496-38803515 Msa1152850:CDS 50.0%
TCAGACCAGGGGAACAACAA+TGG + chr7_4:38803548-38803567 Msa1152850:CDS 50.0%
CAGACCAGGGGAACAACAAT+GGG + chr7_4:38803549-38803568 Msa1152850:CDS 50.0%
AGACCAGGGGAACAACAATG+GGG + chr7_4:38803550-38803569 Msa1152850:CDS 50.0%
! TTACCCCATTGTTGTTCCCC+TGG - chr7_4:38803556-38803575 None:intergenic 50.0%
GGAACAACAATGGGGTAACC+AGG + chr7_4:38803558-38803577 Msa1152850:CDS 50.0%
AGAATGACTTAGAGCCTCCC+TGG - chr7_4:38803579-38803598 None:intergenic 50.0%
! TTCTCCTTTTCCTTTGGCGG+CGG + chr7_4:38803595-38803614 Msa1152850:CDS 50.0%
TGTTGGATGCCCCTCAAAGA+GGG - chr7_4:38803823-38803842 None:intergenic 50.0%
TCCATTATAGGGGAGGTTGC+TGG + chr7_4:38803850-38803869 Msa1152850:CDS 50.0%
ACCAGCAACCTCCCCTATAA+TGG - chr7_4:38803854-38803873 None:intergenic 50.0%
! GTCTCTCTCCCTCTTTTGAC+AGG + chr7_4:38803960-38803979 Msa1152850:intron 50.0%
! CTCTCCCTCTTTTGACAGGT+TGG + chr7_4:38803964-38803983 Msa1152850:intron 50.0%
TATATCCGCGCAAAGCTCCA+AGG + chr7_4:38804034-38804053 Msa1152850:CDS 50.0%
AAAAGCCTTGGAGCTTTGCG+CGG - chr7_4:38804042-38804061 None:intergenic 50.0%
GGTAGCCAACCTACAATAGC+TGG - chr7_4:38804644-38804663 None:intergenic 50.0%
AAATGGAAGCGGCAGCTCTA+GGG + chr7_4:38805063-38805082 Msa1152850:CDS 50.0%
ACGGGTCATCATGACGGTGA+CGG - chr7_4:38802191-38802210 None:intergenic 55.0%
GGCTGAACGGGTCATCATGA+CGG - chr7_4:38802197-38802216 None:intergenic 55.0%
GACGGTGACGATCAATGTGG+TGG - chr7_4:38802218-38802237 None:intergenic 55.0%
AAGGAAACACAAGGCGGCGA+CGG - chr7_4:38802236-38802255 None:intergenic 55.0%
GCTGGGTTTAACATGCGACG+AGG - chr7_4:38802942-38802961 None:intergenic 55.0%
! TTTGAAGCTGGTCATCCGGG+AGG + chr7_4:38803499-38803518 Msa1152850:CDS 55.0%
CAACAATGGGGTAACCAGGG+AGG + chr7_4:38803562-38803581 Msa1152850:CDS 55.0%
GTGTTGGATGCCCCTCAAAG+AGG - chr7_4:38803824-38803843 None:intergenic 55.0%
GAGGTTGCTGGTACACTGCA+AGG + chr7_4:38803862-38803881 Msa1152850:CDS 55.0%
GATTCTCTGGTGGAGTACGG+CGG + chr7_4:38804090-38804109 Msa1152850:CDS 55.0%
GTTGAGAGAAGCAGCACCCT+AGG - chr7_4:38804225-38804244 None:intergenic 55.0%
! CTAGAGCTGCCGCTTCCATT+TGG - chr7_4:38805064-38805083 None:intergenic 55.0%
CAAATGGAAGCGGCAGCTCT+AGG + chr7_4:38805062-38805081 Msa1152850:CDS 55.0%
GGCGACGGTGACGATCAATG+TGG - chr7_4:38802221-38802240 None:intergenic 60.0%
GCTGGTCATCCGGGAGGTTA+TGG + chr7_4:38803505-38803524 Msa1152850:CDS 60.0%
GGTCATCCGGGAGGTTATGG+TGG + chr7_4:38803508-38803527 Msa1152850:CDS 60.0%
CCAGGACCACCATAACCTCC+CGG - chr7_4:38803517-38803536 None:intergenic 60.0%
GGAGGTTATGGTGGTCCTGG+TGG + chr7_4:38803517-38803536 Msa1152850:CDS 60.0%
AGAGCCGCCGCCAAAGGAAA+AGG - chr7_4:38803602-38803621 None:intergenic 60.0%
! TTTTCCTTTGGCGGCGGCTC+TGG + chr7_4:38803601-38803620 Msa1152850:CDS 60.0%
CCGGGAGGTTATGGTGGTCC+TGG + chr7_4:38803514-38803533 Msa1152850:CDS 65.0%
ATCACCAGAGCCGCCGCCAA+AGG - chr7_4:38803608-38803627 None:intergenic 65.0%
GGTGGAGTACGGCGGTGACT+TGG + chr7_4:38804098-38804117 Msa1152850:CDS 65.0%
! CGGCGGTGACTTGGCTGTCA+AGG + chr7_4:38804107-38804126 Msa1152850:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 38802095 38805727 38802095 ID=Msa1152850;Name=Msa1152850
chr7_4 mRNA 38802095 38805727 38802095 ID=Msa1152850-mRNA-1;Parent=Msa1152850;Name=Msa1152850-mRNA-1;_AED=0.04;_eAED=0.04;_QI=104|1|1|1|1|1|7|406|557
chr7_4 exon 38802095 38802291 38802095 ID=Msa1152850-mRNA-1:exon:9369;Parent=Msa1152850-mRNA-1
chr7_4 exon 38802858 38802913 38802858 ID=Msa1152850-mRNA-1:exon:9370;Parent=Msa1152850-mRNA-1
chr7_4 exon 38803006 38803079 38803006 ID=Msa1152850-mRNA-1:exon:9371;Parent=Msa1152850-mRNA-1
chr7_4 exon 38803425 38803894 38803425 ID=Msa1152850-mRNA-1:exon:9372;Parent=Msa1152850-mRNA-1
chr7_4 exon 38803982 38804320 38803982 ID=Msa1152850-mRNA-1:exon:9373;Parent=Msa1152850-mRNA-1
chr7_4 exon 38804590 38804943 38804590 ID=Msa1152850-mRNA-1:exon:9374;Parent=Msa1152850-mRNA-1
chr7_4 exon 38805034 38805727 38805034 ID=Msa1152850-mRNA-1:exon:9375;Parent=Msa1152850-mRNA-1
chr7_4 five_prime_UTR 38802095 38802198 38802095 ID=Msa1152850-mRNA-1:five_prime_utr;Parent=Msa1152850-mRNA-1
chr7_4 CDS 38802199 38802291 38802199 ID=Msa1152850-mRNA-1:cds;Parent=Msa1152850-mRNA-1
chr7_4 CDS 38802858 38802913 38802858 ID=Msa1152850-mRNA-1:cds;Parent=Msa1152850-mRNA-1
chr7_4 CDS 38803006 38803079 38803006 ID=Msa1152850-mRNA-1:cds;Parent=Msa1152850-mRNA-1
chr7_4 CDS 38803425 38803894 38803425 ID=Msa1152850-mRNA-1:cds;Parent=Msa1152850-mRNA-1
chr7_4 CDS 38803982 38804320 38803982 ID=Msa1152850-mRNA-1:cds;Parent=Msa1152850-mRNA-1
chr7_4 CDS 38804590 38804943 38804590 ID=Msa1152850-mRNA-1:cds;Parent=Msa1152850-mRNA-1
chr7_4 CDS 38805034 38805321 38805034 ID=Msa1152850-mRNA-1:cds;Parent=Msa1152850-mRNA-1
chr7_4 three_prime_UTR 38805322 38805727 38805322 ID=Msa1152850-mRNA-1:three_prime_utr;Parent=Msa1152850-mRNA-1
Gene Sequence

>Msa1152850

ATGATGACCCGTTCAGCCACCACATTGATCGTCACCGTCGCCGCCTTGTGTTTCCTTTTACAATCCGAAGCCAAAACAATCGACCCGTACAAGGTTCTTGGGGTTGATAAAAGTGCAAGTCAACGAGAAATTCAGAAGGCTTTTCATAAACTCTCTCTTCAATATCACCCTGACAAGAACAAGGCTAAGGGTGCACAAGAGAAGTTTGCTCAGATAAATAATGCGTACGAGATTTTATCTGATGAACAAAAGAGGAAGAATTATGATTTATATGGAGATGAGAAAGGAAACCCTGGATTTGAAGCTGGTCATCCGGGAGGTTATGGTGGTCCTGGTGGATTTAACTTCAGACCAGGGGAACAACAATGGGGTAACCAGGGAGGCTCTAAGTCATTCTCCTTTTCCTTTGGCGGCGGCTCTGGTGATTCAAATTCTTTTGGATTTGGTTTGGATGATCTTCTTGGAAACTTTTTTGGTGATTTTGGCAGTTCATTTAGGTCTCAATCATCTCAATCTGGGTCCAAGAGTTCCCCCAAGAGTTTTAAGGCCATAAATTCAAATATCTACAAGAAAGAAATAGTTGATGAAGGAATGACTTGGCTTTTGTTATCTTATTCACCCTCTTTGAGGGGCATCCAACACTTTGAGTCCATTATAGGGGAGGTTGCTGGTACACTGCAAGGAGCTTTGAAGGTTGGAAGCATTAACTGTGAAAAGGAAGTCTCATTCTGTAAGGAGCTCGGTGTATATCCGCGCAAAGCTCCAAGGCTTTTTGTTTATTCTTACAAGGAAAATGAAAAGGATTCTCTGGTGGAGTACGGCGGTGACTTGGCTGTCAAGGATTTGAAAGCTTTCTGTCAACAACACTTGCCAATGTTTTCAAAACGGATTGACTTGAATCAACTTGATCAATTAAGCACTGCTGAAAAGTTACCTAGGGTGCTGCTTCTCTCAACCAAAAAGAACACTCCTGTAATTTGGCGTGTTCTTAGTGGCTTGTATCGCAAACGCATTGCCTTCAGTGATGTACAGGTTCATGATGATGCTGATTCGAGAGTGAGAAAGCTAGGAGTTGATGCACTTCCAGCTATTGTAGGTTGGCTACCTAATGGAGAAAAACTTATTCTGAAAACAGGGGTTTCTGTAAAAGATGTAAAATCTGGTGTACAAGATCTTAGTAAGATACTTGATAGTTTTGAGAAAGTAAGTAAAAAGGAAACATCAAGTCAGTCCAAGAAAGAACAAGCTGATTCAGAAGACAAACACATTCAGTTGCTTTCTCGGTCAAACTTTGAGGCTCTTTGTGGGGAGAGAACTCCAGTATGCGTAATTGGTGCCTTTAGATCTTCCAAAGCAAGGGAAAAGCTAGAATCACTTCTCACTTTGGTCTCACAGAAGTCCTTGTCAAGAAAACCAAATGGAAGCGGCAGCTCTAGGGACTCCATTTCCTATGGTCTCTTAGATTCTTCAAAGCAACAATCCTTTCTAAATGCATTTGACAAAACAGGTTATAAATCATCAGATAAGTTATTGATTGCCTACAAACCTCGGAAAGGGAAATTCACTGTATTTACAGGTGAAATGACAATAGAGGAAGTAGAGAATTTTATCAGCTCCGTTCTAAGCGGAGATATACCATTTAGGGAAACACATAAGAAGCCTGTACTCAAATAG
Protein sequence

>Msa1152850

MMTRSATTLIVTVAALCFLLQSEAKTIDPYKVLGVDKSASQREIQKAFHKLSLQYHPDKNKAKGAQEKFAQINNAYEILSDEQKRKNYDLYGDEKGNPGFEAGHPGGYGGPGGFNFRPGEQQWGNQGGSKSFSFSFGGGSGDSNSFGFGLDDLLGNFFGDFGSSFRSQSSQSGSKSSPKSFKAINSNIYKKEIVDEGMTWLLLSYSPSLRGIQHFESIIGEVAGTLQGALKVGSINCEKEVSFCKELGVYPRKAPRLFVYSYKENEKDSLVEYGGDLAVKDLKAFCQQHLPMFSKRIDLNQLDQLSTAEKLPRVLLLSTKKNTPVIWRVLSGLYRKRIAFSDVQVHDDADSRVRKLGVDALPAIVGWLPNGEKLILKTGVSVKDVKSGVQDLSKILDSFEKVSKKETSSQSKKEQADSEDKHIQLLSRSNFEALCGERTPVCVIGAFRSSKAREKLESLLTLVSQKSLSRKPNGSGSSRDSISYGLLDSSKQQSFLNAFDKTGYKSSDKLLIAYKPRKGKFTVFTGEMTIEEVENFISSVLSGDIPFRETHKKPVLK*