AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1067620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067620 MtrunA17_Chr7g0248741 94.040 151 9 0 1 151 1 151 4.39e-102 289
Msa1067620 MtrunA17_Chr8g0348171 71.141 149 43 0 3 151 4 152 8.20e-80 233
Msa1067620 MtrunA17_Chr5g0441301 32.237 152 89 4 3 144 35 182 2.64e-18 79.7
Msa1067620 MtrunA17_Chr3g0093721 32.117 137 90 1 11 144 36 172 1.08e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1067620 AT1G01470.1 61.486 148 57 0 3 150 4 151 5.10e-67 200
Msa1067620 AT2G46140.1 62.162 148 56 0 3 150 19 166 2.32e-63 192
Msa1067620 AT2G44060.2 30.065 153 99 2 3 148 42 193 7.63e-19 81.3
Msa1067620 AT2G44060.1 30.065 153 99 2 3 148 42 193 7.63e-19 81.3

Find 58 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGCTAAAATACTTTATA+TGG 0.189146 7_2:-62377902 None:intergenic
GTTATTGATCTTCCTATTAT+TGG 0.195681 7_2:+62380411 Msa1067620:CDS
ACCATTCCTCTTTGTCAAAA+AGG 0.214029 7_2:+62380441 Msa1067620:CDS
ACGTCAGTCTGTTGAGTATT+TGG 0.258676 7_2:+62378600 Msa1067620:CDS
GAATTGATAGCCTCAAATTA+AGG 0.284800 7_2:-62377880 None:intergenic
GTTACCTTGGTAAAGGATAT+TGG 0.285981 7_2:+62380348 Msa1067620:CDS
AATTCTTAAAGTCATCAATA+TGG 0.314318 7_2:+62380791 Msa1067620:three_prime_UTR
CCATTGAAGCGACTAATAAA+TGG 0.327207 7_2:+62380748 Msa1067620:three_prime_UTR
TCACTGGCTTTCAATGATCC+TGG 0.341581 7_2:-62380279 None:intergenic
ACGTGCTAGACCTAATAATT+TGG 0.343993 7_2:-62377922 None:intergenic
ACTATATTGCTGAGAAAGTT+GGG 0.351702 7_2:+62378524 Msa1067620:CDS
ACTCCTTCAAAAGTGCTAAC+AGG 0.357639 7_2:+62378680 Msa1067620:CDS
ATTGGAATAGAAGTAGAATA+AGG 0.358121 7_2:-62378643 None:intergenic
TGCAAGTTCTGCAATGGTAT+TGG 0.385165 7_2:-62377798 None:intergenic
TATTACAGATGTTGATTTCA+AGG 0.387851 7_2:+62378570 Msa1067620:CDS
CACTGGCTTTCAATGATCCT+GGG 0.407046 7_2:-62380278 None:intergenic
TTGGGACATTGATTATCAAT+TGG 0.408268 7_2:+62380377 Msa1067620:CDS
GACTTAAGTATTTGAAATCA+AGG 0.413608 7_2:+62380652 Msa1067620:three_prime_UTR
CAAAGAAGTCAGAGATGCTT+GGG 0.413925 7_2:-62380476 None:intergenic
GTAATATCTGCCTCAGGTTT+AGG 0.415240 7_2:-62378553 None:intergenic
GAGTACTTGATGTCACAAAT+TGG 0.418355 7_2:-62378661 None:intergenic
AACTATATTGCTGAGAAAGT+TGG 0.425193 7_2:+62378523 Msa1067620:CDS
TAAAGGATATTGGTGCTGAT+TGG 0.447897 7_2:+62380358 Msa1067620:CDS
ATGGTGAAACTGCCAATAAT+AGG 0.448064 7_2:-62380423 None:intergenic
CCATGATTGATGATGGTTGA+TGG 0.454660 7_2:-62378034 None:intergenic
CCATTTATTAGTCGCTTCAA+TGG 0.457476 7_2:-62380748 None:intergenic
GCCTAGTTTGATCCACTATG+AGG 0.457511 7_2:+62380498 Msa1067620:exon
AATTGATAGCCTCAAATTAA+GGG 0.466726 7_2:-62377879 None:intergenic
CATAATTGTTACCTTGGTAA+AGG 0.470478 7_2:+62380341 Msa1067620:CDS
TCATAACATAATTGTTACCT+TGG 0.473108 7_2:+62380335 Msa1067620:CDS
GCAAAGAAGTCAGAGATGCT+TGG 0.474955 7_2:-62380477 None:intergenic
GCTTTCAATGATCCTGGGTC+TGG 0.476763 7_2:-62380273 None:intergenic
AAAGGATATTGGTGCTGATT+GGG 0.479011 7_2:+62380359 Msa1067620:CDS
CCATCAACCATCATCAATCA+TGG 0.492092 7_2:+62378034 Msa1067620:exon
AATATGAAGGTGAGTTATGA+AGG 0.495325 7_2:-62377947 None:intergenic
GTTCTGCAATGGTATTGGCT+TGG 0.496385 7_2:-62377793 None:intergenic
AATGTAAAAGCAAAACATAA+TGG 0.497019 7_2:-62380555 None:intergenic
ATTAAGCAATGTTGTGTCAC+TGG 0.497456 7_2:-62380295 None:intergenic
ATTAGTCGCTTCAATGGAAG+TGG 0.500044 7_2:-62380742 None:intergenic
TATTGTCTTGTGAATGAAGA+TGG 0.501394 7_2:-62377970 None:intergenic
GCCTCATAGTGGATCAAACT+AGG 0.508903 7_2:-62380499 None:intergenic
CTTACATCCATGATTGATGA+TGG 0.515645 7_2:-62378041 None:intergenic
ATAATCAGGGAGATAGCATC+AGG 0.522056 7_2:+62380243 Msa1067620:intron
TACAGATTTGGGGTTAAACA+TGG 0.539001 7_2:+62380697 Msa1067620:three_prime_UTR
ACATCTGTAATATCTGCCTC+AGG 0.544170 7_2:-62378559 None:intergenic
TCAAGTTGCAAGTTCTGCAA+TGG 0.546413 7_2:-62377804 None:intergenic
CTATTATATATGCCTCATAG+TGG 0.548099 7_2:-62380510 None:intergenic
AAGGTAACAATTATGTTATG+AGG 0.551648 7_2:-62380333 None:intergenic
ATTGATAGCCTCAAATTAAG+GGG 0.614364 7_2:-62377878 None:intergenic
CTATATTGCTGAGAAAGTTG+GGG 0.616635 7_2:+62378525 Msa1067620:CDS
ACTTGCAACTTGAAAACGAA+GGG 0.627761 7_2:+62377814 Msa1067620:five_prime_UTR
TGGGGAAATGCCTAAACCTG+AGG 0.658468 7_2:+62378543 Msa1067620:CDS
AGCACCAATATCCTTTACCA+AGG 0.661700 7_2:-62380352 None:intergenic
TCAGGAACTGTACCAGACCC+AGG 0.679182 7_2:+62380261 Msa1067620:CDS
AACTTGCAACTTGAAAACGA+AGG 0.693237 7_2:+62377813 Msa1067620:five_prime_UTR
TGAATGAAGATGGAATATGA+AGG 0.697902 7_2:-62377960 None:intergenic
ATTGCTTAATGTGCTAGTGA+AGG 0.702998 7_2:+62380308 Msa1067620:CDS
TGATTGATGATGGTTGATGG+AGG 0.752123 7_2:-62378031 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTTTTGATTTATATT+AGG + chr7_2:62378731-62378750 Msa1067620:intron 10.0%
!!! TTTAGTTTTGATTTATATTA+GGG + chr7_2:62378732-62378751 Msa1067620:intron 10.0%
!!! TTTTCATCATATATAAATAT+TGG + chr7_2:62378945-62378964 Msa1067620:intron 10.0%
!!! TTTTTAAAAAGACAAAATAA+CGG - chr7_2:62379291-62379310 None:intergenic 10.0%
!!! GTTTTATATTTAATAACATT+AGG - chr7_2:62380091-62380110 None:intergenic 10.0%
!! ATAAAAAAAATTGGAAGATT+GGG - chr7_2:62378104-62378123 None:intergenic 15.0%
!! AATAAAAAAAATTGGAAGAT+TGG - chr7_2:62378105-62378124 None:intergenic 15.0%
!! TGATAGAGAATAAAAAAAAT+TGG - chr7_2:62378113-62378132 None:intergenic 15.0%
!! GTTCAATATCTTAAATAAAT+TGG + chr7_2:62378884-62378903 Msa1067620:intron 15.0%
!!! TTGTCTTTTTAAAAAGATTT+TGG + chr7_2:62379296-62379315 Msa1067620:intron 15.0%
!!! TATTTTAGCACCAAATTATT+AGG + chr7_2:62377912-62377931 Msa1067620:five_prime_UTR 20.0%
!! ATCATGTATCAAAATCAATA+GGG + chr7_2:62378203-62378222 Msa1067620:intron 20.0%
!! TGTTATTCACTATAAATCAT+GGG + chr7_2:62378412-62378431 Msa1067620:intron 20.0%
!! TGATTTATATTAGGGTTAAT+TGG + chr7_2:62378740-62378759 Msa1067620:intron 20.0%
!! ATCGAACATATTAAAATTAG+AGG + chr7_2:62379250-62379269 Msa1067620:intron 20.0%
!!! TTTTTTTGATGTTGATGTTT+TGG - chr7_2:62379474-62379493 None:intergenic 20.0%
!! ATAGTACTCCATTAAATAAT+TGG + chr7_2:62379692-62379711 Msa1067620:intron 20.0%
!!! TATGTTTGATGATAATAATC+AGG + chr7_2:62380229-62380248 Msa1067620:intron 20.0%
!!! ATGTTTGATGATAATAATCA+GGG + chr7_2:62380230-62380249 Msa1067620:intron 20.0%
!!! GGTGCTTTTATTTATTTTAT+TGG - chr7_2:62380537-62380556 None:intergenic 20.0%
!! AATGTAAAAGCAAAACATAA+TGG - chr7_2:62380558-62380577 None:intergenic 20.0%
!!! TTACATTATTTTCGATTTAC+TGG + chr7_2:62380571-62380590 Msa1067620:three_prime_UTR 20.0%
!!! TATTTTATCCCCTTAATTTG+AGG + chr7_2:62377870-62377889 Msa1067620:five_prime_UTR 25.0%
!! AATTGATAGCCTCAAATTAA+GGG - chr7_2:62377882-62377901 None:intergenic 25.0%
!! TGGTGCTAAAATACTTTATA+TGG - chr7_2:62377905-62377924 None:intergenic 25.0%
! ATGAAAGAGAGAAAATAGAT+TGG - chr7_2:62378075-62378094 None:intergenic 25.0%
! GATCATGTATCAAAATCAAT+AGG + chr7_2:62378202-62378221 Msa1067620:intron 25.0%
!! GTGTTATTCACTATAAATCA+TGG + chr7_2:62378411-62378430 Msa1067620:intron 25.0%
! ATTGAAAATGTCACAGTTAT+TGG + chr7_2:62378489-62378508 Msa1067620:intron 25.0%
!! TTTCTCAGCAATATAGTTTT+TGG - chr7_2:62378521-62378540 None:intergenic 25.0%
!!! TATTACAGATGTTGATTTCA+AGG + chr7_2:62378570-62378589 Msa1067620:CDS 25.0%
! ATTGGAATAGAAGTAGAATA+AGG - chr7_2:62378646-62378665 None:intergenic 25.0%
!!! TTAGATTGGTTGATTTGTAA+CGG + chr7_2:62378811-62378830 Msa1067620:intron 25.0%
! CTTAAATAAATTGGAGTCAA+TGG + chr7_2:62378893-62378912 Msa1067620:intron 25.0%
! CAAAAACAAATTTGAGTCAA+AGG + chr7_2:62378917-62378936 Msa1067620:intron 25.0%
! TACCAATAATCCTAATAGAA+CGG - chr7_2:62378980-62378999 None:intergenic 25.0%
!! TATTAGGATTATTGGTAACT+TGG + chr7_2:62378983-62379002 Msa1067620:intron 25.0%
!! AAACTTTTATGACACAAAGT+AGG - chr7_2:62379082-62379101 None:intergenic 25.0%
! TATTCCTTAACTCAAATCAT+TGG - chr7_2:62379115-62379134 None:intergenic 25.0%
!! ATGATTTGAGTTAAGGAATA+AGG + chr7_2:62379115-62379134 Msa1067620:intron 25.0%
!!! AAGTTTTTTGCTTGATAAGT+GGG - chr7_2:62379432-62379451 None:intergenic 25.0%
! AACATCAACATCAAAAAAAC+AGG + chr7_2:62379475-62379494 Msa1067620:intron 25.0%
! CAAGATCACCAATTATTTAA+TGG - chr7_2:62379703-62379722 None:intergenic 25.0%
!! AAATAATTGGTGATCTTGAT+TGG + chr7_2:62379705-62379724 Msa1067620:intron 25.0%
! ATAATGTAGTATACAACAGA+AGG - chr7_2:62379922-62379941 None:intergenic 25.0%
! CAAATTCTTAAGACCAAAAT+TGG + chr7_2:62379943-62379962 Msa1067620:intron 25.0%
! AAGGTAACAATTATGTTATG+AGG - chr7_2:62380336-62380355 None:intergenic 25.0%
! TCATAACATAATTGTTACCT+TGG + chr7_2:62380335-62380354 Msa1067620:CDS 25.0%
! GTTATTGATCTTCCTATTAT+TGG + chr7_2:62380411-62380430 Msa1067620:CDS 25.0%
!! GACTTAAGTATTTGAAATCA+AGG + chr7_2:62380652-62380671 Msa1067620:three_prime_UTR 25.0%
!!! TTTGAAATCAAGGTTTTGAA+TGG + chr7_2:62380662-62380681 Msa1067620:three_prime_UTR 25.0%
!! AAGTTTTCTTGTTACAGATT+TGG + chr7_2:62380685-62380704 Msa1067620:three_prime_UTR 25.0%
!! AGTTTTCTTGTTACAGATTT+GGG + chr7_2:62380686-62380705 Msa1067620:three_prime_UTR 25.0%
! ATTGATAGCCTCAAATTAAG+GGG - chr7_2:62377881-62377900 None:intergenic 30.0%
! GAATTGATAGCCTCAAATTA+AGG - chr7_2:62377883-62377902 None:intergenic 30.0%
AATATGAAGGTGAGTTATGA+AGG - chr7_2:62377950-62377969 None:intergenic 30.0%
TGAATGAAGATGGAATATGA+AGG - chr7_2:62377963-62377982 None:intergenic 30.0%
TATTGTCTTGTGAATGAAGA+TGG - chr7_2:62377973-62377992 None:intergenic 30.0%
AAAAAAATTGGAAGATTGGG+TGG - chr7_2:62378101-62378120 None:intergenic 30.0%
! CGTTTTGTGAGTTATGTTTT+TGG - chr7_2:62378277-62378296 None:intergenic 30.0%
GATAATAATGAGGTTGTTGT+CGG - chr7_2:62378303-62378322 None:intergenic 30.0%
AGATGTCGATGATAATAATG+AGG - chr7_2:62378313-62378332 None:intergenic 30.0%
CATTATTATCATCGACATCT+CGG + chr7_2:62378313-62378332 Msa1067620:intron 30.0%
GATTTATAGTGAATAACACG+TGG - chr7_2:62378410-62378429 None:intergenic 30.0%
TTCACTATAAATCATGGGTT+TGG + chr7_2:62378417-62378436 Msa1067620:intron 30.0%
TCACTATAAATCATGGGTTT+GGG + chr7_2:62378418-62378437 Msa1067620:intron 30.0%
AACTATATTGCTGAGAAAGT+TGG + chr7_2:62378523-62378542 Msa1067620:CDS 30.0%
ACTATATTGCTGAGAAAGTT+GGG + chr7_2:62378524-62378543 Msa1067620:CDS 30.0%
!!! GAGTTGAGACTTTATTTTAG+TGG + chr7_2:62378776-62378795 Msa1067620:intron 30.0%
!!! GAGACTTTATTTTAGTGGAT+CGG + chr7_2:62378781-62378800 Msa1067620:intron 30.0%
!! ATTTGTAACGGAATGGATTA+TGG + chr7_2:62378823-62378842 Msa1067620:intron 30.0%
! GGATTATGGTAGTTGAATTT+TGG + chr7_2:62378837-62378856 Msa1067620:intron 30.0%
TTCCGTTCTATTAGGATTAT+TGG + chr7_2:62378975-62378994 Msa1067620:intron 30.0%
!! CTTGTTGAAATGTTTTTCGA+AGG + chr7_2:62379010-62379029 Msa1067620:intron 30.0%
! GATTCCAATGATTTGAGTTA+AGG + chr7_2:62379108-62379127 Msa1067620:intron 30.0%
ATTACCAATGCATGTAATTG+TGG - chr7_2:62379185-62379204 None:intergenic 30.0%
CATATGTGGTTATGATTGTT+AGG - chr7_2:62379337-62379356 None:intergenic 30.0%
! GAAATTGGATTTTCTCAAGT+CGG - chr7_2:62379387-62379406 None:intergenic 30.0%
!! GTCTTGGAGTTTTATGAAAT+TGG - chr7_2:62379402-62379421 None:intergenic 30.0%
!!! GAAGTTTTTTGCTTGATAAG+TGG - chr7_2:62379433-62379452 None:intergenic 30.0%
!!! TTGATGTTTTGGTTGATGTT+AGG - chr7_2:62379463-62379482 None:intergenic 30.0%
!!! TCAAAGGGCATGTTATTTTT+GGG - chr7_2:62379554-62379573 None:intergenic 30.0%
!!! TTCAAAGGGCATGTTATTTT+TGG - chr7_2:62379555-62379574 None:intergenic 30.0%
! AAGGTTAATTGGTGTTCAAA+GGG - chr7_2:62379569-62379588 None:intergenic 30.0%
! TAAGGTTAATTGGTGTTCAA+AGG - chr7_2:62379570-62379589 None:intergenic 30.0%
! TTGCAAGACTTTTAAGCAAT+TGG + chr7_2:62379744-62379763 Msa1067620:intron 30.0%
GTAAAATGCTCACTTTATAG+AGG + chr7_2:62379793-62379812 Msa1067620:intron 30.0%
AGATCAATAATGCTCCTTAT+GGG - chr7_2:62379825-62379844 None:intergenic 30.0%
AAGATCAATAATGCTCCTTA+TGG - chr7_2:62379826-62379845 None:intergenic 30.0%
! AGATGTAGTAAAGCCAATTT+TGG - chr7_2:62379959-62379978 None:intergenic 30.0%
TTTGCTCAAAATATACTGAG+AGG - chr7_2:62379997-62380016 None:intergenic 30.0%
CATAATTGTTACCTTGGTAA+AGG + chr7_2:62380341-62380360 Msa1067620:CDS 30.0%
! TTGGGACATTGATTATCAAT+TGG + chr7_2:62380377-62380396 Msa1067620:CDS 30.0%
CTATTATATATGCCTCATAG+TGG - chr7_2:62380513-62380532 None:intergenic 30.0%
! CAACAAAAAGTACAACCAAA+GGG - chr7_2:62380606-62380625 None:intergenic 30.0%
!! GTTGTACTTTTTGTTGGTTA+TGG + chr7_2:62380610-62380629 Msa1067620:three_prime_UTR 30.0%
! GTTTTCTTGTTACAGATTTG+GGG + chr7_2:62380687-62380706 Msa1067620:three_prime_UTR 30.0%
AACTTGCAACTTGAAAACGA+AGG + chr7_2:62377813-62377832 Msa1067620:five_prime_UTR 35.0%
ACTTGCAACTTGAAAACGAA+GGG + chr7_2:62377814-62377833 Msa1067620:five_prime_UTR 35.0%
ACGTGCTAGACCTAATAATT+TGG - chr7_2:62377925-62377944 None:intergenic 35.0%
CTTACATCCATGATTGATGA+TGG - chr7_2:62378044-62378063 None:intergenic 35.0%
!!! TATGTTTTTGGATCATGTGC+AGG - chr7_2:62378265-62378284 None:intergenic 35.0%
CTATATTGCTGAGAAAGTTG+GGG + chr7_2:62378525-62378544 Msa1067620:CDS 35.0%
GAGTACTTGATGTCACAAAT+TGG - chr7_2:62378664-62378683 None:intergenic 35.0%
! AAACCTGTTAGCACTTTTGA+AGG - chr7_2:62378686-62378705 None:intergenic 35.0%
GGATCGGTTATAGATTAGAT+TGG + chr7_2:62378797-62378816 Msa1067620:intron 35.0%
!! TTGGTTGATTTGTAACGGAA+TGG + chr7_2:62378816-62378835 Msa1067620:intron 35.0%
TGAGTTAAGGAATAAGGAGT+CGG + chr7_2:62379121-62379140 Msa1067620:intron 35.0%
TTGACCACAATTACATGCAT+TGG + chr7_2:62379178-62379197 Msa1067620:intron 35.0%
TATGTTCGATCTCTATCGAA+TGG - chr7_2:62379240-62379259 None:intergenic 35.0%
CGACAAAGTAATGACATATG+TGG - chr7_2:62379351-62379370 None:intergenic 35.0%
ATGTCATTACTTTGTCGATG+CGG + chr7_2:62379354-62379373 Msa1067620:intron 35.0%
!!! TTAATTGGTTTTTGCCTGTG+TGG - chr7_2:62379593-62379612 None:intergenic 35.0%
TCTTGCAAATACTTACCACT+CGG - chr7_2:62379732-62379751 None:intergenic 35.0%
ATTAAGCAATGTTGTGTCAC+TGG - chr7_2:62380298-62380317 None:intergenic 35.0%
ATTGCTTAATGTGCTAGTGA+AGG + chr7_2:62380308-62380327 Msa1067620:CDS 35.0%
GTTACCTTGGTAAAGGATAT+TGG + chr7_2:62380348-62380367 Msa1067620:CDS 35.0%
!! TAAAGGATATTGGTGCTGAT+TGG + chr7_2:62380358-62380377 Msa1067620:CDS 35.0%
!! AAAGGATATTGGTGCTGATT+GGG + chr7_2:62380359-62380378 Msa1067620:CDS 35.0%
ATGGTGAAACTGCCAATAAT+AGG - chr7_2:62380426-62380445 None:intergenic 35.0%
ACCATTCCTCTTTGTCAAAA+AGG + chr7_2:62380441-62380460 Msa1067620:CDS 35.0%
! TCCTTTTTGACAAAGAGGAA+TGG - chr7_2:62380445-62380464 None:intergenic 35.0%
! ATCTCTCCTTTTTGACAAAG+AGG - chr7_2:62380450-62380469 None:intergenic 35.0%
!!! TACTGGTTTCTTTTTCCCTT+TGG + chr7_2:62380588-62380607 Msa1067620:three_prime_UTR 35.0%
! CCAACAAAAAGTACAACCAA+AGG - chr7_2:62380607-62380626 None:intergenic 35.0%
!! CCTTTGGTTGTACTTTTTGT+TGG + chr7_2:62380604-62380623 Msa1067620:three_prime_UTR 35.0%
! TACAGATTTGGGGTTAAACA+TGG + chr7_2:62380697-62380716 Msa1067620:three_prime_UTR 35.0%
CCATTTATTAGTCGCTTCAA+TGG - chr7_2:62380751-62380770 None:intergenic 35.0%
CCATTGAAGCGACTAATAAA+TGG + chr7_2:62380748-62380767 Msa1067620:three_prime_UTR 35.0%
TGCAAGTTCTGCAATGGTAT+TGG - chr7_2:62377801-62377820 None:intergenic 40.0%
! TCAAGTTGCAAGTTCTGCAA+TGG - chr7_2:62377807-62377826 None:intergenic 40.0%
!! TGATTGATGATGGTTGATGG+AGG - chr7_2:62378034-62378053 None:intergenic 40.0%
!! CCATGATTGATGATGGTTGA+TGG - chr7_2:62378037-62378056 None:intergenic 40.0%
CCATCAACCATCATCAATCA+TGG + chr7_2:62378034-62378053 Msa1067620:exon 40.0%
GGGTGGAAGAACAATGAAAT+AGG - chr7_2:62378346-62378365 None:intergenic 40.0%
AATCATGGGTTTGGGTATGA+AGG + chr7_2:62378426-62378445 Msa1067620:intron 40.0%
GTAATATCTGCCTCAGGTTT+AGG - chr7_2:62378556-62378575 None:intergenic 40.0%
ACATCTGTAATATCTGCCTC+AGG - chr7_2:62378562-62378581 None:intergenic 40.0%
ACGTCAGTCTGTTGAGTATT+TGG + chr7_2:62378600-62378619 Msa1067620:CDS 40.0%
!! ACTCCTTCAAAAGTGCTAAC+AGG + chr7_2:62378680-62378699 Msa1067620:CDS 40.0%
GAGTGTAGTTCCGTTCTATT+AGG + chr7_2:62378967-62378986 Msa1067620:intron 40.0%
ATAAGTGGGACATGTTGTCT+TGG - chr7_2:62379418-62379437 None:intergenic 40.0%
!!! GTTTTGGTTGATGTTAGGTG+AGG - chr7_2:62379458-62379477 None:intergenic 40.0%
TATTTGTCCTGCTGTATGCT+TGG - chr7_2:62379527-62379546 None:intergenic 40.0%
ACCAATTAACCTTACCACAC+AGG + chr7_2:62379576-62379595 Msa1067620:intron 40.0%
! TATAGAGGTCGATTCCCATA+AGG + chr7_2:62379808-62379827 Msa1067620:intron 40.0%
ATAATCAGGGAGATAGCATC+AGG + chr7_2:62380243-62380262 Msa1067620:intron 40.0%
AGCACCAATATCCTTTACCA+AGG - chr7_2:62380355-62380374 None:intergenic 40.0%
CAAAGAAGTCAGAGATGCTT+GGG - chr7_2:62380479-62380498 None:intergenic 40.0%
ATTAGTCGCTTCAATGGAAG+TGG - chr7_2:62380745-62380764 None:intergenic 40.0%
!! GTTCTGCAATGGTATTGGCT+TGG - chr7_2:62377796-62377815 None:intergenic 45.0%
! TTTTGGATCATGTGCAGGTG+TGG - chr7_2:62378260-62378279 None:intergenic 45.0%
!! TTTCACGCGCTTTGAGATCT+GGG - chr7_2:62378366-62378385 None:intergenic 45.0%
!!! TTTTCACGCGCTTTGAGATC+TGG - chr7_2:62378367-62378386 None:intergenic 45.0%
! TTGGTTGATGTTAGGTGAGG+TGG - chr7_2:62379455-62379474 None:intergenic 45.0%
CTGCTGTATGCTTGGTCTAT+GGG - chr7_2:62379519-62379538 None:intergenic 45.0%
GCCTGTGTGGTAAGGTTAAT+TGG - chr7_2:62379580-62379599 None:intergenic 45.0%
! TGGTTTTTGCCTGTGTGGTA+AGG - chr7_2:62379588-62379607 None:intergenic 45.0%
!! CACTGGCTTTCAATGATCCT+GGG - chr7_2:62380281-62380300 None:intergenic 45.0%
!! TCACTGGCTTTCAATGATCC+TGG - chr7_2:62380282-62380301 None:intergenic 45.0%
GCAAAGAAGTCAGAGATGCT+TGG - chr7_2:62380480-62380499 None:intergenic 45.0%
GCCTAGTTTGATCCACTATG+AGG + chr7_2:62380498-62380517 Msa1067620:exon 45.0%
!! GCCTCATAGTGGATCAAACT+AGG - chr7_2:62380502-62380521 None:intergenic 45.0%
!!! ATATATGTATTTTTAATTTT+TGG - chr7_2:62378161-62378180 None:intergenic 5.0%
!! AATGTTATATAAAAATTAAT+TGG - chr7_2:62379608-62379627 None:intergenic 5.0%
TGGGGAAATGCCTAAACCTG+AGG + chr7_2:62378543-62378562 Msa1067620:CDS 50.0%
GTATGCTTGGTCTATGGGTG+TGG - chr7_2:62379514-62379533 None:intergenic 50.0%
CCTGCTGTATGCTTGGTCTA+TGG - chr7_2:62379520-62379539 None:intergenic 50.0%
CCATAGACCAAGCATACAGC+AGG + chr7_2:62379517-62379536 Msa1067620:intron 50.0%
! GTGATCTTGATTGGTCCGAG+TGG + chr7_2:62379714-62379733 Msa1067620:intron 50.0%
GCTTTCAATGATCCTGGGTC+TGG - chr7_2:62380276-62380295 None:intergenic 50.0%
TCAGGAACTGTACCAGACCC+AGG + chr7_2:62380261-62380280 Msa1067620:CDS 55.0%
!! CACGCGCTTTGAGATCTGGG+TGG - chr7_2:62378363-62378382 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 62377733 62380811 62377733 ID=Msa1067620;Name=Msa1067620
chr7_2 mRNA 62377733 62380811 62377733 ID=Msa1067620-mRNA-1;Parent=Msa1067620;Name=Msa1067620-mRNA-1;_AED=0.22;_eAED=0.22;_QI=320|1|1|1|0.5|0.33|3|308|151
chr7_2 exon 62377733 62378058 62377733 ID=Msa1067620-mRNA-1:exon:12641;Parent=Msa1067620-mRNA-1
chr7_2 exon 62378505 62378701 62378505 ID=Msa1067620-mRNA-1:exon:12642;Parent=Msa1067620-mRNA-1
chr7_2 exon 62380251 62380811 62380251 ID=Msa1067620-mRNA-1:exon:12643;Parent=Msa1067620-mRNA-1
chr7_2 five_prime_UTR 62377733 62378052 62377733 ID=Msa1067620-mRNA-1:five_prime_utr;Parent=Msa1067620-mRNA-1
chr7_2 CDS 62378053 62378058 62378053 ID=Msa1067620-mRNA-1:cds;Parent=Msa1067620-mRNA-1
chr7_2 CDS 62378505 62378701 62378505 ID=Msa1067620-mRNA-1:cds;Parent=Msa1067620-mRNA-1
chr7_2 CDS 62380251 62380503 62380251 ID=Msa1067620-mRNA-1:cds;Parent=Msa1067620-mRNA-1
chr7_2 three_prime_UTR 62380504 62380811 62380504 ID=Msa1067620-mRNA-1:three_prime_utr;Parent=Msa1067620-mRNA-1
Gene Sequence

>Msa1067620

ATGGATTTATTGGACAAAGCCAAAAACTATATTGCTGAGAAAGTTGGGGAAATGCCTAAACCTGAGGCAGATATTACAGATGTTGATTTCAAGGACGTGACACGTCAGTCTGTTGAGTATTTGGCTAAGATCAATGTTTCAAATCCTTATTCTACTTCTATTCCAATTTGTGACATCAAGTACTCCTTCAAAAGTGCTAACAGGGAGATAGCATCAGGAACTGTACCAGACCCAGGATCATTGAAAGCCAGTGACACAACATTGCTTAATGTGCTAGTGAAGGTGCCTCATAACATAATTGTTACCTTGGTAAAGGATATTGGTGCTGATTGGGACATTGATTATCAATTGGATATTGATCTTGTTATTGATCTTCCTATTATTGGCAGTTTCACCATTCCTCTTTGTCAAAAAGGAGAGATCAAGCTCCCAAGCATCTCTGACTTCTTTGCCTAG
Protein sequence

>Msa1067620

MDLLDKAKNYIAEKVGEMPKPEADITDVDFKDVTRQSVEYLAKINVSNPYSTSIPICDIKYSFKSANREIASGTVPDPGSLKASDTTLLNVLVKVPHNIIVTLVKDIGADWDIDYQLDIDLVIDLPIIGSFTIPLCQKGEIKLPSISDFFA*