AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1112990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112990 MtrunA17_Chr7g0248741 93.960 149 9 0 26 174 3 151 1.71e-100 286
Msa1112990 MtrunA17_Chr8g0348171 71.711 152 43 0 23 174 1 152 2.96e-82 239
Msa1112990 MtrunA17_Chr5g0441301 32.051 156 92 4 26 171 35 186 3.71e-18 80.1
Msa1112990 MtrunA17_Chr3g0093721 32.117 137 90 1 34 167 36 172 2.20e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1112990 AT1G01470.1 60.927 151 59 0 23 173 1 151 3.54e-68 204
Msa1112990 AT2G46140.1 61.589 151 58 0 23 173 16 166 7.11e-64 194
Msa1112990 AT2G44060.2 30.065 153 99 2 26 171 42 193 1.49e-18 81.3
Msa1112990 AT2G44060.1 30.065 153 99 2 26 171 42 193 1.49e-18 81.3

Find 56 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGAAAATGTCACAGTTAT+TGG 0.195408 7_3:+59138032 Msa1112990:CDS
GTTATTGATCTTCCTATTAT+TGG 0.195681 7_3:+59139929 Msa1112990:CDS
ACCATTCCTCTTTGTCAAAA+AGG 0.214029 7_3:+59139959 Msa1112990:CDS
ACATGGTTGTTATACTAAAT+AGG 0.253660 7_3:+59140233 Msa1112990:three_prime_UTR
ACGTCAGTCTGTTGAGTATT+TGG 0.258676 7_3:+59138143 Msa1112990:CDS
TTCACTATAAATCATGGGTT+TGG 0.270983 7_3:+59137960 Msa1112990:exon
GTTACCTTGGTAAAGGATAT+TGG 0.285981 7_3:+59139866 Msa1112990:CDS
AATTCTTAAAGTCATCAATA+TGG 0.314318 7_3:+59140310 Msa1112990:three_prime_UTR
CCATTGAAGCGACTAATAAA+TGG 0.327207 7_3:+59140267 Msa1112990:three_prime_UTR
GATCATGTATCAAAATCAAT+AGG 0.327448 7_3:+59137745 Msa1112990:five_prime_UTR
TCACTGGCTTTCAATGATCC+TGG 0.341581 7_3:-59139797 None:intergenic
ACTATATTGCTGAGAAAGTT+GGG 0.351702 7_3:+59138067 Msa1112990:CDS
ATTGGAATAGAAGTAGAATA+AGG 0.358121 7_3:-59138186 None:intergenic
GGGTGGAAGAACAATGAAAT+AGG 0.361334 7_3:-59137886 None:intergenic
TCACTATAAATCATGGGTTT+GGG 0.371840 7_3:+59137961 Msa1112990:exon
TATTACAGATGTTGATTTCA+AGG 0.387851 7_3:+59138113 Msa1112990:CDS
TACTTAAGTATTTGAAATCA+AGG 0.391462 7_3:+59140171 Msa1112990:three_prime_UTR
CACTGGCTTTCAATGATCCT+GGG 0.407046 7_3:-59139796 None:intergenic
TTGGGACATTGATTATCAAT+TGG 0.408268 7_3:+59139895 Msa1112990:CDS
GTGTTATTCACTATAAATCA+TGG 0.414894 7_3:+59137954 Msa1112990:exon
GTAATATCTGCCTCAGGTTT+AGG 0.415240 7_3:-59138096 None:intergenic
GAGTACTTGATGTCACAAAT+TGG 0.418355 7_3:-59138204 None:intergenic
AACTATATTGCTGAGAAAGT+TGG 0.425193 7_3:+59138066 Msa1112990:CDS
TAAAGGATATTGGTGCTGAT+TGG 0.447897 7_3:+59139876 Msa1112990:CDS
ATGGTGAAACTGCCAATAAT+AGG 0.448064 7_3:-59139941 None:intergenic
CCATTTATTAGTCGCTTCAA+TGG 0.457476 7_3:-59140267 None:intergenic
GCCTAGTTTGATCCACTATG+AGG 0.457511 7_3:+59140016 Msa1112990:exon
TTTCACGCGCTTAGAGATCT+GGG 0.470352 7_3:-59137906 None:intergenic
CATAATTGTTACCTTGGTAA+AGG 0.470478 7_3:+59139859 Msa1112990:CDS
TCATAACATAATTGTTACCT+TGG 0.473108 7_3:+59139853 Msa1112990:CDS
GCAAAGAAATCAGAGATACT+TGG 0.475565 7_3:-59139995 None:intergenic
GCTTTCAATGATCCTGGGTC+TGG 0.476763 7_3:-59139791 None:intergenic
AAAGGATATTGGTGCTGATT+GGG 0.479011 7_3:+59139877 Msa1112990:CDS
ATCATGTATCAAAATCAATA+GGG 0.485344 7_3:+59137746 Msa1112990:five_prime_UTR
ACTCCTTCAAAAGTGCCAAC+AGG 0.493527 7_3:+59138223 Msa1112990:CDS
GATGTAAAAGCAAAACATAA+TGG 0.497019 7_3:-59140073 None:intergenic
ATTAAGCAATGTTGTGTCAC+TGG 0.497456 7_3:-59139813 None:intergenic
ATTAGTCGCTTCAATGGAAG+TGG 0.500044 7_3:-59140261 None:intergenic
AATCATGGGTTTGGGTATGA+AGG 0.504731 7_3:+59137969 Msa1112990:exon
GCCTCATAGTGGATCAAACT+AGG 0.508903 7_3:-59140017 None:intergenic
ATAATCAGGGAGATAGCATC+AGG 0.522056 7_3:+59139761 Msa1112990:intron
CAAAGAAATCAGAGATACTT+GGG 0.534749 7_3:-59139994 None:intergenic
CATTATTATCATCGACATCT+CGG 0.536101 7_3:+59137856 Msa1112990:five_prime_UTR
TGTTATTCACTATAAATCAT+GGG 0.537616 7_3:+59137955 Msa1112990:exon
ACATCTGTAATATCTGCCTC+AGG 0.544170 7_3:-59138102 None:intergenic
CTATTATATATGCCTCATAG+TGG 0.548099 7_3:-59140028 None:intergenic
AAGGTAACAATTATGTTATG+AGG 0.551648 7_3:-59139851 None:intergenic
GATAATAATGAGGTTGTTGT+CGG 0.554554 7_3:-59137843 None:intergenic
TAACAGATTGGGGTTAAACA+TGG 0.567599 7_3:+59140216 Msa1112990:three_prime_UTR
CTATATTGCTGAGAAAGTTG+GGG 0.616635 7_3:+59138068 Msa1112990:CDS
AGATGTCGATGATAATAATG+AGG 0.630269 7_3:-59137853 None:intergenic
TGGGGAAATGCCTAAACCTG+AGG 0.658468 7_3:+59138086 Msa1112990:CDS
AGCACCAATATCCTTTACCA+AGG 0.661700 7_3:-59139870 None:intergenic
TCAGGAACTGTACCAGACCC+AGG 0.679182 7_3:+59139779 Msa1112990:CDS
ATTGCTTAATGTGCTAGTGA+AGG 0.702998 7_3:+59139826 Msa1112990:CDS
GATTTATAGTGAATAACACG+TGG 0.724400 7_3:-59137950 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAGTTTTGATTTATATT+AGG + chr7_3:59138273-59138292 Msa1112990:intron 10.0%
!!! TTTAGTTTTGATTTATATTA+GGG + chr7_3:59138274-59138293 Msa1112990:intron 10.0%
!!! TTCAATATCTTTAAAAAAAT+TGG + chr7_3:59138427-59138446 Msa1112990:intron 10.0%
!!! TTTTTAAAAAGACAAAATAA+TGG - chr7_3:59138807-59138826 None:intergenic 10.0%
!! AGTGTTATATAAAAATTAAT+TGG - chr7_3:59139126-59139145 None:intergenic 10.0%
!!! GTTTTATATTTAATAACATT+AGG - chr7_3:59139609-59139628 None:intergenic 10.0%
!! AAAACTAAAATTAAAGAAGA+AGG - chr7_3:59138263-59138282 None:intergenic 15.0%
!! TTTAAAAAAATTGGAGTAAA+TGG + chr7_3:59138436-59138455 Msa1112990:intron 15.0%
!! AAATACTTTCATCATATATT+AGG + chr7_3:59138483-59138502 Msa1112990:intron 15.0%
!!! TTGTCTTTTTAAAAAGAATT+TGG + chr7_3:59138812-59138831 Msa1112990:intron 15.0%
!! ATCATGTATCAAAATCAATA+GGG + chr7_3:59137746-59137765 Msa1112990:five_prime_UTR 20.0%
!! TGTTATTCACTATAAATCAT+GGG + chr7_3:59137955-59137974 Msa1112990:exon 20.0%
!! TGATTTATATTAGGGTTAAT+TGG + chr7_3:59138282-59138301 Msa1112990:intron 20.0%
!! TCATCATATATTAGGATTAT+TGG + chr7_3:59138491-59138510 Msa1112990:intron 20.0%
!! ATCGAACATATTAAAATTAG+AGG + chr7_3:59138766-59138785 Msa1112990:intron 20.0%
!!! TTTTTTTGATGTTGATGTTT+TGG - chr7_3:59138990-59139009 None:intergenic 20.0%
!! ATAGTACTCCATTAAATAAT+TGG + chr7_3:59139210-59139229 Msa1112990:intron 20.0%
!!! TATGTTTGATGATAATAATC+AGG + chr7_3:59139747-59139766 Msa1112990:intron 20.0%
!!! ATGTTTGATGATAATAATCA+GGG + chr7_3:59139748-59139767 Msa1112990:intron 20.0%
!!! GGTGCTTTTATTTATTTTAT+TGG - chr7_3:59140055-59140074 None:intergenic 20.0%
!!! TACTTAAGTATTTGAAATCA+AGG + chr7_3:59140171-59140190 Msa1112990:three_prime_UTR 20.0%
!!! AAGTTTTTTTGTTAACAGAT+TGG + chr7_3:59140204-59140223 Msa1112990:three_prime_UTR 20.0%
!!! AGTTTTTTTGTTAACAGATT+GGG + chr7_3:59140205-59140224 Msa1112990:three_prime_UTR 20.0%
!! AATTCTTAAAGTCATCAATA+TGG + chr7_3:59140310-59140329 Msa1112990:three_prime_UTR 20.0%
! GATCATGTATCAAAATCAAT+AGG + chr7_3:59137745-59137764 Msa1112990:five_prime_UTR 25.0%
!! GTGTTATTCACTATAAATCA+TGG + chr7_3:59137954-59137973 Msa1112990:exon 25.0%
!! TTTCTCAGCAATATAGTTTT+TGG - chr7_3:59138064-59138083 None:intergenic 25.0%
!!! TATTACAGATGTTGATTTCA+AGG + chr7_3:59138113-59138132 Msa1112990:CDS 25.0%
! ATTGGAATAGAAGTAGAATA+AGG - chr7_3:59138189-59138208 None:intergenic 25.0%
!!! TTAGATTGGTTGATTTGTAA+CGG + chr7_3:59138353-59138372 Msa1112990:intron 25.0%
! CAAAAACAAATTTGAGTCAA+AGG + chr7_3:59138460-59138479 Msa1112990:intron 25.0%
!! TATTAGGATTATTGGTAACT+TGG + chr7_3:59138499-59138518 Msa1112990:intron 25.0%
!! AAACTTTTATGACACAAAGT+AGG - chr7_3:59138598-59138617 None:intergenic 25.0%
! TATTCCTTAACTCAAATCAT+TGG - chr7_3:59138631-59138650 None:intergenic 25.0%
!! ATGATTTGAGTTAAGGAATA+AGG + chr7_3:59138631-59138650 Msa1112990:intron 25.0%
! AACATCAACATCAAAAAAAC+AGG + chr7_3:59138991-59139010 Msa1112990:intron 25.0%
!!! TCAAAGGTCATGTTATTTTT+GGG - chr7_3:59139072-59139091 None:intergenic 25.0%
!!! TTCAAAGGTCATGTTATTTT+TGG - chr7_3:59139073-59139092 None:intergenic 25.0%
! CAAGATCACCAATTATTTAA+TGG - chr7_3:59139221-59139240 None:intergenic 25.0%
!! AAATAATTGGTGATCTTGAT+TGG + chr7_3:59139223-59139242 Msa1112990:intron 25.0%
! ATAATGTAGTATACAACAGA+AGG - chr7_3:59139440-59139459 None:intergenic 25.0%
! CAAATTCTTAAGACCAAAAT+TGG + chr7_3:59139461-59139480 Msa1112990:intron 25.0%
! AAGGTAACAATTATGTTATG+AGG - chr7_3:59139854-59139873 None:intergenic 25.0%
! TCATAACATAATTGTTACCT+TGG + chr7_3:59139853-59139872 Msa1112990:CDS 25.0%
! GTTATTGATCTTCCTATTAT+TGG + chr7_3:59139929-59139948 Msa1112990:CDS 25.0%
! GATGTAAAAGCAAAACATAA+TGG - chr7_3:59140076-59140095 None:intergenic 25.0%
!! TTACATCATTTTCGATTTAC+TGG + chr7_3:59140089-59140108 Msa1112990:three_prime_UTR 25.0%
!!! TTTGAAATCAAGGTTTTGAA+TGG + chr7_3:59140181-59140200 Msa1112990:three_prime_UTR 25.0%
!!! GTTTTTTTGTTAACAGATTG+GGG + chr7_3:59140206-59140225 Msa1112990:three_prime_UTR 25.0%
! ACATGGTTGTTATACTAAAT+AGG + chr7_3:59140233-59140252 Msa1112990:three_prime_UTR 25.0%
! CGTTTTGTGAGTTATGTTTT+TGG - chr7_3:59137820-59137839 None:intergenic 30.0%
GATAATAATGAGGTTGTTGT+CGG - chr7_3:59137846-59137865 None:intergenic 30.0%
AGATGTCGATGATAATAATG+AGG - chr7_3:59137856-59137875 None:intergenic 30.0%
CATTATTATCATCGACATCT+CGG + chr7_3:59137856-59137875 Msa1112990:five_prime_UTR 30.0%
GATTTATAGTGAATAACACG+TGG - chr7_3:59137953-59137972 None:intergenic 30.0%
TTCACTATAAATCATGGGTT+TGG + chr7_3:59137960-59137979 Msa1112990:exon 30.0%
TCACTATAAATCATGGGTTT+GGG + chr7_3:59137961-59137980 Msa1112990:exon 30.0%
ACTGAAAATGTCACAGTTAT+TGG + chr7_3:59138032-59138051 Msa1112990:CDS 30.0%
AACTATATTGCTGAGAAAGT+TGG + chr7_3:59138066-59138085 Msa1112990:CDS 30.0%
ACTATATTGCTGAGAAAGTT+GGG + chr7_3:59138067-59138086 Msa1112990:CDS 30.0%
GAAAAAAAACACAAACCTGT+TGG - chr7_3:59138241-59138260 None:intergenic 30.0%
!!! GAGTTGAGACTTTATTTTAG+TGG + chr7_3:59138318-59138337 Msa1112990:intron 30.0%
GGATCAGTTATAGATTAGAT+TGG + chr7_3:59138339-59138358 Msa1112990:intron 30.0%
!! ATTTGTAACGGAATGGATTA+TGG + chr7_3:59138365-59138384 Msa1112990:intron 30.0%
! GGATTATGGTAGTTGAATTT+TGG + chr7_3:59138379-59138398 Msa1112990:intron 30.0%
!! CTTGTTGAAATGTTTTTCGA+AGG + chr7_3:59138526-59138545 Msa1112990:intron 30.0%
! GATTCCAATGATTTGAGTTA+AGG + chr7_3:59138624-59138643 Msa1112990:intron 30.0%
ATTACCAATGCATGTAATTG+TGG - chr7_3:59138701-59138720 None:intergenic 30.0%
CATATGTGGTTATGATTGTT+AGG - chr7_3:59138853-59138872 None:intergenic 30.0%
! GAAATTGGATTTTCTCAAGT+CGG - chr7_3:59138903-59138922 None:intergenic 30.0%
!! GTCTTGGAGTTTTATGAAAT+TGG - chr7_3:59138918-59138937 None:intergenic 30.0%
! AAGTTTTTCGCTTGATAAGT+GGG - chr7_3:59138948-59138967 None:intergenic 30.0%
!!! TTGATGTTTTGGTTGATGTT+AGG - chr7_3:59138979-59138998 None:intergenic 30.0%
! TAAGGTTAATTGGTGTTCAA+AGG - chr7_3:59139088-59139107 None:intergenic 30.0%
! TTGCAAGACTTTTAAGCAAT+TGG + chr7_3:59139262-59139281 Msa1112990:intron 30.0%
GTAAAATGCTCACTTTATAG+AGG + chr7_3:59139311-59139330 Msa1112990:intron 30.0%
AGATCAATAATGCTCCTTAT+GGG - chr7_3:59139343-59139362 None:intergenic 30.0%
AAGATCAATAATGCTCCTTA+TGG - chr7_3:59139344-59139363 None:intergenic 30.0%
! AGATGTAGTAAAGCCAATTT+TGG - chr7_3:59139477-59139496 None:intergenic 30.0%
TTTGCTCAAAATATACTGAG+AGG - chr7_3:59139515-59139534 None:intergenic 30.0%
CATAATTGTTACCTTGGTAA+AGG + chr7_3:59139859-59139878 Msa1112990:CDS 30.0%
! TTGGGACATTGATTATCAAT+TGG + chr7_3:59139895-59139914 Msa1112990:CDS 30.0%
CAAAGAAATCAGAGATACTT+GGG - chr7_3:59139997-59140016 None:intergenic 30.0%
CTATTATATATGCCTCATAG+TGG - chr7_3:59140031-59140050 None:intergenic 30.0%
! CAACAAAAAGTACAACCAAA+GGG - chr7_3:59140126-59140145 None:intergenic 30.0%
!! GTTGTACTTTTTGTTGGTTA+TGG + chr7_3:59140130-59140149 Msa1112990:three_prime_UTR 30.0%
!!! TATGTTTTTGGATCATGTGC+AGG - chr7_3:59137808-59137827 None:intergenic 35.0%
CTATATTGCTGAGAAAGTTG+GGG + chr7_3:59138068-59138087 Msa1112990:CDS 35.0%
GAGTACTTGATGTCACAAAT+TGG - chr7_3:59138207-59138226 None:intergenic 35.0%
!! TTGGTTGATTTGTAACGGAA+TGG + chr7_3:59138358-59138377 Msa1112990:intron 35.0%
TGAGTTAAGGAATAAGGAGT+CGG + chr7_3:59138637-59138656 Msa1112990:intron 35.0%
TTGACCACAATTACATGCAT+TGG + chr7_3:59138694-59138713 Msa1112990:intron 35.0%
TATGTTCGATCTCTATCGAA+TGG - chr7_3:59138756-59138775 None:intergenic 35.0%
CGACAAAGTAATGACATATG+TGG - chr7_3:59138867-59138886 None:intergenic 35.0%
ATGTCATTACTTTGTCGATG+CGG + chr7_3:59138870-59138889 Msa1112990:intron 35.0%
! GAAGTTTTTCGCTTGATAAG+TGG - chr7_3:59138949-59138968 None:intergenic 35.0%
!!! TGTTTTGGTTGATGTTAGGT+GGG - chr7_3:59138975-59138994 None:intergenic 35.0%
!!! ATGTTTTGGTTGATGTTAGG+TGG - chr7_3:59138976-59138995 None:intergenic 35.0%
! GTTGTATGCTTTTGGTCTAT+GGG - chr7_3:59139035-59139054 None:intergenic 35.0%
! TGTTGTATGCTTTTGGTCTA+TGG - chr7_3:59139036-59139055 None:intergenic 35.0%
! ATAGACCAAAAGCATACAAC+AGG + chr7_3:59139035-59139054 Msa1112990:intron 35.0%
! TTTGTCCTGTTGTATGCTTT+TGG - chr7_3:59139043-59139062 None:intergenic 35.0%
TCTTGCAAATACTTACCACT+CGG - chr7_3:59139250-59139269 None:intergenic 35.0%
ATTAAGCAATGTTGTGTCAC+TGG - chr7_3:59139816-59139835 None:intergenic 35.0%
ATTGCTTAATGTGCTAGTGA+AGG + chr7_3:59139826-59139845 Msa1112990:CDS 35.0%
GTTACCTTGGTAAAGGATAT+TGG + chr7_3:59139866-59139885 Msa1112990:CDS 35.0%
!! TAAAGGATATTGGTGCTGAT+TGG + chr7_3:59139876-59139895 Msa1112990:CDS 35.0%
!! AAAGGATATTGGTGCTGATT+GGG + chr7_3:59139877-59139896 Msa1112990:CDS 35.0%
ATGGTGAAACTGCCAATAAT+AGG - chr7_3:59139944-59139963 None:intergenic 35.0%
ACCATTCCTCTTTGTCAAAA+AGG + chr7_3:59139959-59139978 Msa1112990:CDS 35.0%
! TCCTTTTTGACAAAGAGGAA+TGG - chr7_3:59139963-59139982 None:intergenic 35.0%
! ATCTCTCCTTTTTGACAAAG+AGG - chr7_3:59139968-59139987 None:intergenic 35.0%
GCAAAGAAATCAGAGATACT+TGG - chr7_3:59139998-59140017 None:intergenic 35.0%
! CCAACAAAAAGTACAACCAA+AGG - chr7_3:59140127-59140146 None:intergenic 35.0%
!! CCTTTGGTTGTACTTTTTGT+TGG + chr7_3:59140124-59140143 Msa1112990:three_prime_UTR 35.0%
TAACAGATTGGGGTTAAACA+TGG + chr7_3:59140216-59140235 Msa1112990:three_prime_UTR 35.0%
CCATTTATTAGTCGCTTCAA+TGG - chr7_3:59140270-59140289 None:intergenic 35.0%
CCATTGAAGCGACTAATAAA+TGG + chr7_3:59140267-59140286 Msa1112990:three_prime_UTR 35.0%
GGGTGGAAGAACAATGAAAT+AGG - chr7_3:59137889-59137908 None:intergenic 40.0%
AATCATGGGTTTGGGTATGA+AGG + chr7_3:59137969-59137988 Msa1112990:exon 40.0%
GTAATATCTGCCTCAGGTTT+AGG - chr7_3:59138099-59138118 None:intergenic 40.0%
ACATCTGTAATATCTGCCTC+AGG - chr7_3:59138105-59138124 None:intergenic 40.0%
ACGTCAGTCTGTTGAGTATT+TGG + chr7_3:59138143-59138162 Msa1112990:CDS 40.0%
! AAACCTGTTGGCACTTTTGA+AGG - chr7_3:59138229-59138248 None:intergenic 40.0%
ATAAGTGGGACATGTTGTCT+TGG - chr7_3:59138934-59138953 None:intergenic 40.0%
!!! GTTTTGGTTGATGTTAGGTG+GGG - chr7_3:59138974-59138993 None:intergenic 40.0%
ACCAATTAACCTTACCACAC+AGG + chr7_3:59139094-59139113 Msa1112990:intron 40.0%
! TTAATTGGTGTTTGCCTGTG+TGG - chr7_3:59139111-59139130 None:intergenic 40.0%
! TATAGAGGTCGATTCCCATA+AGG + chr7_3:59139326-59139345 Msa1112990:intron 40.0%
ATAATCAGGGAGATAGCATC+AGG + chr7_3:59139761-59139780 Msa1112990:intron 40.0%
AGCACCAATATCCTTTACCA+AGG - chr7_3:59139873-59139892 None:intergenic 40.0%
! CTGGTGTTTCTTTTTCCCTT+TGG + chr7_3:59140108-59140127 Msa1112990:three_prime_UTR 40.0%
ATTAGTCGCTTCAATGGAAG+TGG - chr7_3:59140264-59140283 None:intergenic 40.0%
! TTTTGGATCATGTGCAGGTG+TGG - chr7_3:59137803-59137822 None:intergenic 45.0%
TTTCACGCGCTTAGAGATCT+GGG - chr7_3:59137909-59137928 None:intergenic 45.0%
! TTTTCACGCGCTTAGAGATC+TGG - chr7_3:59137910-59137929 None:intergenic 45.0%
!! ACTCCTTCAAAAGTGCCAAC+AGG + chr7_3:59138223-59138242 Msa1112990:CDS 45.0%
! ATGCTTTTGGTCTATGGGTG+TGG - chr7_3:59139030-59139049 None:intergenic 45.0%
GCCTGTGTGGTAAGGTTAAT+TGG - chr7_3:59139098-59139117 None:intergenic 45.0%
!! CACTGGCTTTCAATGATCCT+GGG - chr7_3:59139799-59139818 None:intergenic 45.0%
!! TCACTGGCTTTCAATGATCC+TGG - chr7_3:59139800-59139819 None:intergenic 45.0%
GCCTAGTTTGATCCACTATG+AGG + chr7_3:59140016-59140035 Msa1112990:exon 45.0%
!! GCCTCATAGTGGATCAAACT+AGG - chr7_3:59140020-59140039 None:intergenic 45.0%
TGGGGAAATGCCTAAACCTG+AGG + chr7_3:59138086-59138105 Msa1112990:CDS 50.0%
! TTGGTTGATGTTAGGTGGGG+TGG - chr7_3:59138971-59138990 None:intergenic 50.0%
TGGTGTTTGCCTGTGTGGTA+AGG - chr7_3:59139106-59139125 None:intergenic 50.0%
! GTGATCTTGATTGGTCCGAG+TGG + chr7_3:59139232-59139251 Msa1112990:intron 50.0%
GCTTTCAATGATCCTGGGTC+TGG - chr7_3:59139794-59139813 None:intergenic 50.0%
TCAGGAACTGTACCAGACCC+AGG + chr7_3:59139779-59139798 Msa1112990:CDS 55.0%
CACGCGCTTAGAGATCTGGG+TGG - chr7_3:59137906-59137925 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 59137744 59140346 59137744 ID=Msa1112990;Name=Msa1112990
chr7_3 mRNA 59137744 59140346 59137744 ID=Msa1112990-mRNA-1;Parent=Msa1112990;Name=Msa1112990-mRNA-1;_AED=0.20;_eAED=0.20;_QI=229|1|1|1|1|1|2|325|174
chr7_3 exon 59137744 59138244 59137744 ID=Msa1112990-mRNA-1:exon:13062;Parent=Msa1112990-mRNA-1
chr7_3 exon 59139769 59140346 59139769 ID=Msa1112990-mRNA-1:exon:13063;Parent=Msa1112990-mRNA-1
chr7_3 five_prime_UTR 59137744 59137972 59137744 ID=Msa1112990-mRNA-1:five_prime_utr;Parent=Msa1112990-mRNA-1
chr7_3 CDS 59137973 59138244 59137973 ID=Msa1112990-mRNA-1:cds;Parent=Msa1112990-mRNA-1
chr7_3 CDS 59139769 59140021 59139769 ID=Msa1112990-mRNA-1:cds;Parent=Msa1112990-mRNA-1
chr7_3 three_prime_UTR 59140022 59140346 59140022 ID=Msa1112990-mRNA-1:three_prime_utr;Parent=Msa1112990-mRNA-1
Gene Sequence

>Msa1112990

ATGGGTTTGGGTATGAAGGTGTCGTTGAGTGTAATTTGTGTGAGTCTAATATTTACAGTACTGAAAATGTCACAGTTATTGGACAAAGCCAAAAACTATATTGCTGAGAAAGTTGGGGAAATGCCTAAACCTGAGGCAGATATTACAGATGTTGATTTCAAGGACGTGACACGTCAGTCTGTTGAGTATTTGGCTAAGATCAATGTTTCAAATCCTTATTCTACTTCTATTCCAATTTGTGACATCAAGTACTCCTTCAAAAGTGCCAACAGGGAGATAGCATCAGGAACTGTACCAGACCCAGGATCATTGAAAGCCAGTGACACAACATTGCTTAATGTGCTAGTGAAGGTGCCTCATAACATAATTGTTACCTTGGTAAAGGATATTGGTGCTGATTGGGACATTGATTATCAATTGGATATTGATCTTGTTATTGATCTTCCTATTATTGGCAGTTTCACCATTCCTCTTTGTCAAAAAGGAGAGATCAAGCTCCCAAGTATCTCTGATTTCTTTGCCTAG
Protein sequence

>Msa1112990

MGLGMKVSLSVICVSLIFTVLKMSQLLDKAKNYIAEKVGEMPKPEADITDVDFKDVTRQSVEYLAKINVSNPYSTSIPICDIKYSFKSANREIASGTVPDPGSLKASDTTLLNVLVKVPHNIIVTLVKDIGADWDIDYQLDIDLVIDLPIIGSFTIPLCQKGEIKLPSISDFFA*