Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067630 | XP_003624093.3 | 90.968 | 155 | 11 | 1 | 1 | 155 | 23 | 174 | 9.24e-96 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067630 | sp|P46519|LEA14_SOYBN | 76.129 | 155 | 34 | 1 | 1 | 155 | 1 | 152 | 3.70e-83 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067630 | G7L6Q3 | 90.968 | 155 | 11 | 1 | 1 | 155 | 1 | 152 | 8.00e-96 | 282 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1067620 | Msa1067630 | 0.929096 | 1.133159e-92 | -8.615850e-47 |
| Msa1067630 | Msa1112990 | 0.835447 | 1.669315e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067630 | MtrunA17_Chr7g0248741 | 90.789 | 152 | 11 | 1 | 4 | 155 | 3 | 151 | 5.27e-97 | 276 |
| Msa1067630 | MtrunA17_Chr8g0348171 | 69.032 | 155 | 45 | 1 | 1 | 155 | 1 | 152 | 6.69e-79 | 230 |
| Msa1067630 | MtrunA17_Chr5g0441301 | 32.895 | 152 | 91 | 3 | 4 | 148 | 35 | 182 | 2.62e-20 | 85.1 |
| Msa1067630 | MtrunA17_Chr3g0093721 | 31.081 | 148 | 99 | 1 | 4 | 148 | 25 | 172 | 5.21e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1067630 | AT1G01470.1 | 59.091 | 154 | 60 | 1 | 1 | 154 | 1 | 151 | 1.13e-65 | 197 |
| Msa1067630 | AT2G46140.1 | 59.740 | 154 | 59 | 1 | 1 | 154 | 16 | 166 | 1.30e-61 | 187 |
| Msa1067630 | AT2G44060.2 | 30.921 | 152 | 102 | 2 | 4 | 152 | 42 | 193 | 9.55e-20 | 84.0 |
| Msa1067630 | AT2G44060.1 | 30.921 | 152 | 102 | 2 | 4 | 152 | 42 | 193 | 9.55e-20 | 84.0 |
Find 32 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAAATGTCACAGTTAT+TGG | 0.128910 | 7_2:+62383489 | None:intergenic |
| GTTATTGATCTTCCTATTAT+TGG | 0.195681 | 7_2:+62385411 | Msa1067630:CDS |
| ACCATTCCTCTTTGTCAAAA+AGG | 0.214029 | 7_2:+62385441 | Msa1067630:CDS |
| GTTACCTTGGTAAAGGATAT+TGG | 0.285981 | 7_2:+62385348 | Msa1067630:CDS |
| TCACTGGCTTTCAATGATCC+TGG | 0.341581 | 7_2:-62385279 | None:intergenic |
| ACTCCTTCAAAAGTGGTAAC+AGG | 0.351810 | 7_2:+62383689 | Msa1067630:CDS |
| CTGAGGAAGCTGAGAAAGTT+GGG | 0.363532 | 7_2:+62383533 | Msa1067630:CDS |
| ATTGGAATAGAAGTAGAATA+AGG | 0.387246 | 7_2:-62383652 | None:intergenic |
| TATTACAGATGTTGATTTCA+AGG | 0.387851 | 7_2:+62383579 | Msa1067630:CDS |
| GAGTACTTGATGTCGCAAAT+TGG | 0.403119 | 7_2:-62383670 | None:intergenic |
| CACTGGCTTTCAATGATCCT+GGG | 0.407046 | 7_2:-62385278 | None:intergenic |
| GTAATATCTGCCTCAGGTTT+AGG | 0.407081 | 7_2:-62383562 | None:intergenic |
| TTGGGACATTGATTATCAAT+TGG | 0.408268 | 7_2:+62385377 | Msa1067630:CDS |
| CAAAGAAGTCAGAGATGCTT+GGG | 0.413925 | 7_2:-62385476 | None:intergenic |
| TAAAGGATATTGGTGCTGAT+TGG | 0.447897 | 7_2:+62385358 | Msa1067630:CDS |
| ATGGTGAAACTGCCAATAAT+AGG | 0.448064 | 7_2:-62385423 | None:intergenic |
| CATAATTGTTACCTTGGTAA+AGG | 0.470478 | 7_2:+62385341 | Msa1067630:CDS |
| TCATAACATAATTGTTACCT+TGG | 0.473108 | 7_2:+62385335 | Msa1067630:CDS |
| GCAAAGAAGTCAGAGATGCT+TGG | 0.474955 | 7_2:-62385477 | None:intergenic |
| GCTTTCAATGATCCTGGGTC+TGG | 0.476763 | 7_2:-62385273 | None:intergenic |
| AAAGGATATTGGTGCTGATT+GGG | 0.479011 | 7_2:+62385359 | Msa1067630:CDS |
| GCTGAGGAAGCTGAGAAAGT+TGG | 0.489281 | 7_2:+62383532 | Msa1067630:CDS |
| ATTAAGCAATGTTGTGTCAC+TGG | 0.497456 | 7_2:-62385295 | None:intergenic |
| ATCAAGTACTCCTTCAAAAG+TGG | 0.512812 | 7_2:+62383682 | Msa1067630:CDS |
| ATAATCAGGGAGATAGCATC+AGG | 0.522056 | 7_2:+62385243 | Msa1067630:intron |
| ACATCTGTAATATCTGCCTC+AGG | 0.544170 | 7_2:-62383568 | None:intergenic |
| AAGGTAACAATTATGTTATG+AGG | 0.551648 | 7_2:-62385333 | None:intergenic |
| AGCACCAATATCCTTTACCA+AGG | 0.661700 | 7_2:-62385352 | None:intergenic |
| TGAGGAAGCTGAGAAAGTTG+GGG | 0.667172 | 7_2:+62383534 | Msa1067630:CDS |
| TGGGGAAGTGCCTAAACCTG+AGG | 0.674217 | 7_2:+62383552 | Msa1067630:CDS |
| TCAGGAACTGTACCAGACCC+AGG | 0.679182 | 7_2:+62385261 | Msa1067630:CDS |
| ATTGCTTAATGTGCTAGTGA+AGG | 0.702998 | 7_2:+62385308 | Msa1067630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTACAGTAAAAATTAAT+TGG | - | chr7_2:62384619-62384638 | None:intergenic | 10.0% |
| !! | AAATTACAGTAAAAATTAAT+TGG | - | chr7_2:62384619-62384638 | None:intergenic | 10.0% |
| !! | GTTCAATATCTTAAAAAAAT+TGG | + | chr7_2:62383917-62383936 | Msa1067630:intron | 15.0% |
| !!! | CATTTATATCTTTTTTTTTG+TGG | - | chr7_2:62384323-62384342 | None:intergenic | 15.0% |
| !! | GTTCAATATCTTAAAAAAAT+TGG | + | chr7_2:62383917-62383936 | Msa1067630:intron | 15.0% |
| !!! | CATTTATATCTTTTTTTTTG+TGG | - | chr7_2:62384323-62384342 | None:intergenic | 15.0% |
| !!! | GAATCAATTATTGATTAGAT+AGG | + | chr7_2:62383830-62383849 | Msa1067630:intron | 20.0% |
| !!! | TTATATCTTTTTTTTTGTGG+TGG | - | chr7_2:62384320-62384339 | None:intergenic | 20.0% |
| !! | AGATATAAATGAATAGTGTA+TGG | + | chr7_2:62384332-62384351 | Msa1067630:intron | 20.0% |
| !!! | TAACTAGAGAAGTTTTAAAA+TGG | - | chr7_2:62384481-62384500 | None:intergenic | 20.0% |
| !! | TAGTACTCCATTAAAATAAT+TGG | + | chr7_2:62384691-62384710 | Msa1067630:intron | 20.0% |
| !!! | AAGATCACCAATTATTTTAA+TGG | - | chr7_2:62384701-62384720 | None:intergenic | 20.0% |
| !! | AAATTCTTAAGACCAAAATT+TGG | + | chr7_2:62384961-62384980 | Msa1067630:intron | 20.0% |
| !!! | GAATCAATTATTGATTAGAT+AGG | + | chr7_2:62383830-62383849 | Msa1067630:intron | 20.0% |
| !!! | TTATATCTTTTTTTTTGTGG+TGG | - | chr7_2:62384320-62384339 | None:intergenic | 20.0% |
| !! | AGATATAAATGAATAGTGTA+TGG | + | chr7_2:62384332-62384351 | Msa1067630:intron | 20.0% |
| !!! | TAACTAGAGAAGTTTTAAAA+TGG | - | chr7_2:62384481-62384500 | None:intergenic | 20.0% |
| !! | TAGTACTCCATTAAAATAAT+TGG | + | chr7_2:62384691-62384710 | Msa1067630:intron | 20.0% |
| !!! | AAGATCACCAATTATTTTAA+TGG | - | chr7_2:62384701-62384720 | None:intergenic | 20.0% |
| !! | AAATTCTTAAGACCAAAATT+TGG | + | chr7_2:62384961-62384980 | Msa1067630:intron | 20.0% |
| !!! | TATTACAGATGTTGATTTCA+AGG | + | chr7_2:62383579-62383598 | Msa1067630:CDS | 25.0% |
| ! | ATTGGAATAGAAGTAGAATA+AGG | - | chr7_2:62383655-62383674 | None:intergenic | 25.0% |
| ! | TTGATTTATATCGCGTTAAT+TGG | + | chr7_2:62383755-62383774 | Msa1067630:intron | 25.0% |
| !!! | GAATTGAGACTTTATTTTAG+TGG | + | chr7_2:62383791-62383810 | Msa1067630:intron | 25.0% |
| !!! | TTAGATAGGTTGATTTGTAA+CGG | + | chr7_2:62383844-62383863 | Msa1067630:intron | 25.0% |
| ! | CTTAAAAAAATTGGAGTCAA+CGG | + | chr7_2:62383926-62383945 | Msa1067630:intron | 25.0% |
| !!! | CTTGTTGAATTGTTTTTCAA+AGG | + | chr7_2:62384031-62384050 | Msa1067630:intron | 25.0% |
| !! | AATTCAGAATTTTATACCGT+AGG | - | chr7_2:62384105-62384124 | None:intergenic | 25.0% |
| !! | AAATAATTGGTGATCTTGAT+TGG | + | chr7_2:62384704-62384723 | Msa1067630:intron | 25.0% |
| ! | ATAATGTAGTATACAACAGA+AGG | - | chr7_2:62384939-62384958 | None:intergenic | 25.0% |
| !! | TTACATGTAAAGCCAAATTT+TGG | - | chr7_2:62384976-62384995 | None:intergenic | 25.0% |
| !!! | TATGTTTGATGATGATAATC+AGG | + | chr7_2:62385229-62385248 | Msa1067630:intron | 25.0% |
| !!! | ATGTTTGATGATGATAATCA+GGG | + | chr7_2:62385230-62385249 | Msa1067630:intron | 25.0% |
| ! | AAGGTAACAATTATGTTATG+AGG | - | chr7_2:62385336-62385355 | None:intergenic | 25.0% |
| ! | TCATAACATAATTGTTACCT+TGG | + | chr7_2:62385335-62385354 | Msa1067630:CDS | 25.0% |
| ! | GTTATTGATCTTCCTATTAT+TGG | + | chr7_2:62385411-62385430 | Msa1067630:CDS | 25.0% |
| !!! | TATTACAGATGTTGATTTCA+AGG | + | chr7_2:62383579-62383598 | Msa1067630:CDS | 25.0% |
| ! | ATTGGAATAGAAGTAGAATA+AGG | - | chr7_2:62383655-62383674 | None:intergenic | 25.0% |
| ! | TTGATTTATATCGCGTTAAT+TGG | + | chr7_2:62383755-62383774 | Msa1067630:intron | 25.0% |
| !!! | GAATTGAGACTTTATTTTAG+TGG | + | chr7_2:62383791-62383810 | Msa1067630:intron | 25.0% |
| !!! | TTAGATAGGTTGATTTGTAA+CGG | + | chr7_2:62383844-62383863 | Msa1067630:intron | 25.0% |
| ! | CTTAAAAAAATTGGAGTCAA+CGG | + | chr7_2:62383926-62383945 | Msa1067630:intron | 25.0% |
| !!! | CTTGTTGAATTGTTTTTCAA+AGG | + | chr7_2:62384031-62384050 | Msa1067630:intron | 25.0% |
| !! | AATTCAGAATTTTATACCGT+AGG | - | chr7_2:62384105-62384124 | None:intergenic | 25.0% |
| !! | AAATAATTGGTGATCTTGAT+TGG | + | chr7_2:62384704-62384723 | Msa1067630:intron | 25.0% |
| ! | ATAATGTAGTATACAACAGA+AGG | - | chr7_2:62384939-62384958 | None:intergenic | 25.0% |
| !! | TTACATGTAAAGCCAAATTT+TGG | - | chr7_2:62384976-62384995 | None:intergenic | 25.0% |
| !!! | TATGTTTGATGATGATAATC+AGG | + | chr7_2:62385229-62385248 | Msa1067630:intron | 25.0% |
| !!! | ATGTTTGATGATGATAATCA+GGG | + | chr7_2:62385230-62385249 | Msa1067630:intron | 25.0% |
| ! | AAGGTAACAATTATGTTATG+AGG | - | chr7_2:62385336-62385355 | None:intergenic | 25.0% |
| ! | TCATAACATAATTGTTACCT+TGG | + | chr7_2:62385335-62385354 | Msa1067630:CDS | 25.0% |
| ! | GTTATTGATCTTCCTATTAT+TGG | + | chr7_2:62385411-62385430 | Msa1067630:CDS | 25.0% |
| ! | TTCCTCAGCAATATAGTTTT+TGG | - | chr7_2:62383521-62383540 | None:intergenic | 30.0% |
| ! | ATTTGTAACGGAATCGATTA+TGG | + | chr7_2:62383856-62383875 | Msa1067630:intron | 30.0% |
| ! | CGATTATGGTAGTTGAATTT+TGG | + | chr7_2:62383870-62383889 | Msa1067630:intron | 30.0% |
| CCAATATTTATATCTGGTGA+AGG | - | chr7_2:62383977-62383996 | None:intergenic | 30.0% | |
| CCTTCACCAGATATAAATAT+TGG | + | chr7_2:62383974-62383993 | Msa1067630:intron | 30.0% | |
| ! | AGTTGAATTGTTTGGTAACT+TGG | + | chr7_2:62384004-62384023 | Msa1067630:intron | 30.0% |
| TACTTTCGATCTCTATCAAA+TGG | - | chr7_2:62384233-62384252 | None:intergenic | 30.0% | |
| ATTCCATAAATCGAGTGTTA+TGG | + | chr7_2:62384252-62384271 | Msa1067630:intron | 30.0% | |
| ACAATGCATAAAAACATGCA+AGG | + | chr7_2:62384275-62384294 | Msa1067630:intron | 30.0% | |
| ACTTCTCTAGTTATGATTGT+TGG | + | chr7_2:62384488-62384507 | Msa1067630:intron | 30.0% | |
| CTTCTCTAGTTATGATTGTT+GGG | + | chr7_2:62384489-62384508 | Msa1067630:intron | 30.0% | |
| !!! | TCAAAGGGCATGTTATTTTT+GGG | - | chr7_2:62384558-62384577 | None:intergenic | 30.0% |
| !!! | TTCAAAGGGCATGTTATTTT+TGG | - | chr7_2:62384559-62384578 | None:intergenic | 30.0% |
| ! | ATTGGTGTTCAAACTTCAAA+GGG | - | chr7_2:62384573-62384592 | None:intergenic | 30.0% |
| ! | AATTGGTGTTCAAACTTCAA+AGG | - | chr7_2:62384574-62384593 | None:intergenic | 30.0% |
| ! | TAGCAAGACTTTTAAGCAAT+TGG | + | chr7_2:62384743-62384762 | Msa1067630:intron | 30.0% |
| GTAAAATGCTCACTTTATAG+AGG | + | chr7_2:62384792-62384811 | Msa1067630:intron | 30.0% | |
| AGATCAATAATGCTCCTTAT+GGG | - | chr7_2:62384824-62384843 | None:intergenic | 30.0% | |
| AAGATCAATAATGCTCCTTA+TGG | - | chr7_2:62384825-62384844 | None:intergenic | 30.0% | |
| CATAATTGTTACCTTGGTAA+AGG | + | chr7_2:62385341-62385360 | Msa1067630:CDS | 30.0% | |
| ! | TTGGGACATTGATTATCAAT+TGG | + | chr7_2:62385377-62385396 | Msa1067630:CDS | 30.0% |
| ! | TTCCTCAGCAATATAGTTTT+TGG | - | chr7_2:62383521-62383540 | None:intergenic | 30.0% |
| ! | ATTTGTAACGGAATCGATTA+TGG | + | chr7_2:62383856-62383875 | Msa1067630:intron | 30.0% |
| ! | CGATTATGGTAGTTGAATTT+TGG | + | chr7_2:62383870-62383889 | Msa1067630:intron | 30.0% |
| CCAATATTTATATCTGGTGA+AGG | - | chr7_2:62383977-62383996 | None:intergenic | 30.0% | |
| CCTTCACCAGATATAAATAT+TGG | + | chr7_2:62383974-62383993 | Msa1067630:intron | 30.0% | |
| ! | AGTTGAATTGTTTGGTAACT+TGG | + | chr7_2:62384004-62384023 | Msa1067630:intron | 30.0% |
| TACTTTCGATCTCTATCAAA+TGG | - | chr7_2:62384233-62384252 | None:intergenic | 30.0% | |
| ATTCCATAAATCGAGTGTTA+TGG | + | chr7_2:62384252-62384271 | Msa1067630:intron | 30.0% | |
| ACAATGCATAAAAACATGCA+AGG | + | chr7_2:62384275-62384294 | Msa1067630:intron | 30.0% | |
| ACTTCTCTAGTTATGATTGT+TGG | + | chr7_2:62384488-62384507 | Msa1067630:intron | 30.0% | |
| CTTCTCTAGTTATGATTGTT+GGG | + | chr7_2:62384489-62384508 | Msa1067630:intron | 30.0% | |
| !!! | TCAAAGGGCATGTTATTTTT+GGG | - | chr7_2:62384558-62384577 | None:intergenic | 30.0% |
| !!! | TTCAAAGGGCATGTTATTTT+TGG | - | chr7_2:62384559-62384578 | None:intergenic | 30.0% |
| ! | ATTGGTGTTCAAACTTCAAA+GGG | - | chr7_2:62384573-62384592 | None:intergenic | 30.0% |
| ! | AATTGGTGTTCAAACTTCAA+AGG | - | chr7_2:62384574-62384593 | None:intergenic | 30.0% |
| ! | TAGCAAGACTTTTAAGCAAT+TGG | + | chr7_2:62384743-62384762 | Msa1067630:intron | 30.0% |
| GTAAAATGCTCACTTTATAG+AGG | + | chr7_2:62384792-62384811 | Msa1067630:intron | 30.0% | |
| AGATCAATAATGCTCCTTAT+GGG | - | chr7_2:62384824-62384843 | None:intergenic | 30.0% | |
| AAGATCAATAATGCTCCTTA+TGG | - | chr7_2:62384825-62384844 | None:intergenic | 30.0% | |
| CATAATTGTTACCTTGGTAA+AGG | + | chr7_2:62385341-62385360 | Msa1067630:CDS | 30.0% | |
| ! | TTGGGACATTGATTATCAAT+TGG | + | chr7_2:62385377-62385396 | Msa1067630:CDS | 30.0% |
| AGCCAAAAACTATATTGCTG+AGG | + | chr7_2:62383516-62383535 | Msa1067630:CDS | 35.0% | |
| ATCAAGTACTCCTTCAAAAG+TGG | + | chr7_2:62383682-62383701 | Msa1067630:CDS | 35.0% | |
| !! | AAACCTGTTACCACTTTTGA+AGG | - | chr7_2:62383695-62383714 | None:intergenic | 35.0% |
| GACGCTCCAATATTTATATC+TGG | - | chr7_2:62383983-62384002 | None:intergenic | 35.0% | |
| CTATTTGAATGCGACAAAAC+CGG | - | chr7_2:62384195-62384214 | None:intergenic | 35.0% | |
| TGTCCATAACACTCGATTTA+TGG | - | chr7_2:62384258-62384277 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTTTGTGGTGGC+CGG | - | chr7_2:62384316-62384335 | None:intergenic | 35.0% |
| ! | GAAATGCATTTTTGTGTGTG+TGG | - | chr7_2:62384358-62384377 | None:intergenic | 35.0% |
| CAGTTATTTGTCCTGTTGTA+TGG | - | chr7_2:62384535-62384554 | None:intergenic | 35.0% | |
| TCTTGCTAATGCTTAACACT+CGG | - | chr7_2:62384731-62384750 | None:intergenic | 35.0% | |
| ATTAAGCAATGTTGTGTCAC+TGG | - | chr7_2:62385298-62385317 | None:intergenic | 35.0% | |
| ATTGCTTAATGTGCTAGTGA+AGG | + | chr7_2:62385308-62385327 | Msa1067630:CDS | 35.0% | |
| GTTACCTTGGTAAAGGATAT+TGG | + | chr7_2:62385348-62385367 | Msa1067630:CDS | 35.0% | |
| !! | TAAAGGATATTGGTGCTGAT+TGG | + | chr7_2:62385358-62385377 | Msa1067630:CDS | 35.0% |
| !! | AAAGGATATTGGTGCTGATT+GGG | + | chr7_2:62385359-62385378 | Msa1067630:CDS | 35.0% |
| ATGGTGAAACTGCCAATAAT+AGG | - | chr7_2:62385426-62385445 | None:intergenic | 35.0% | |
| ACCATTCCTCTTTGTCAAAA+AGG | + | chr7_2:62385441-62385460 | Msa1067630:CDS | 35.0% | |
| ! | TCCTTTTTGACAAAGAGGAA+TGG | - | chr7_2:62385445-62385464 | None:intergenic | 35.0% |
| ! | ATCTCTCCTTTTTGACAAAG+AGG | - | chr7_2:62385450-62385469 | None:intergenic | 35.0% |
| AGCCAAAAACTATATTGCTG+AGG | + | chr7_2:62383516-62383535 | Msa1067630:CDS | 35.0% | |
| ATCAAGTACTCCTTCAAAAG+TGG | + | chr7_2:62383682-62383701 | Msa1067630:CDS | 35.0% | |
| !! | AAACCTGTTACCACTTTTGA+AGG | - | chr7_2:62383695-62383714 | None:intergenic | 35.0% |
| GACGCTCCAATATTTATATC+TGG | - | chr7_2:62383983-62384002 | None:intergenic | 35.0% | |
| CTATTTGAATGCGACAAAAC+CGG | - | chr7_2:62384195-62384214 | None:intergenic | 35.0% | |
| TGTCCATAACACTCGATTTA+TGG | - | chr7_2:62384258-62384277 | None:intergenic | 35.0% | |
| !!! | ATCTTTTTTTTTGTGGTGGC+CGG | - | chr7_2:62384316-62384335 | None:intergenic | 35.0% |
| ! | GAAATGCATTTTTGTGTGTG+TGG | - | chr7_2:62384358-62384377 | None:intergenic | 35.0% |
| CAGTTATTTGTCCTGTTGTA+TGG | - | chr7_2:62384535-62384554 | None:intergenic | 35.0% | |
| TCTTGCTAATGCTTAACACT+CGG | - | chr7_2:62384731-62384750 | None:intergenic | 35.0% | |
| ATTAAGCAATGTTGTGTCAC+TGG | - | chr7_2:62385298-62385317 | None:intergenic | 35.0% | |
| ATTGCTTAATGTGCTAGTGA+AGG | + | chr7_2:62385308-62385327 | Msa1067630:CDS | 35.0% | |
| GTTACCTTGGTAAAGGATAT+TGG | + | chr7_2:62385348-62385367 | Msa1067630:CDS | 35.0% | |
| !! | TAAAGGATATTGGTGCTGAT+TGG | + | chr7_2:62385358-62385377 | Msa1067630:CDS | 35.0% |
| !! | AAAGGATATTGGTGCTGATT+GGG | + | chr7_2:62385359-62385378 | Msa1067630:CDS | 35.0% |
| ATGGTGAAACTGCCAATAAT+AGG | - | chr7_2:62385426-62385445 | None:intergenic | 35.0% | |
| ACCATTCCTCTTTGTCAAAA+AGG | + | chr7_2:62385441-62385460 | Msa1067630:CDS | 35.0% | |
| ! | TCCTTTTTGACAAAGAGGAA+TGG | - | chr7_2:62385445-62385464 | None:intergenic | 35.0% |
| ! | ATCTCTCCTTTTTGACAAAG+AGG | - | chr7_2:62385450-62385469 | None:intergenic | 35.0% |
| GTAATATCTGCCTCAGGTTT+AGG | - | chr7_2:62383565-62383584 | None:intergenic | 40.0% | |
| ACATCTGTAATATCTGCCTC+AGG | - | chr7_2:62383571-62383590 | None:intergenic | 40.0% | |
| GAGTACTTGATGTCGCAAAT+TGG | - | chr7_2:62383673-62383692 | None:intergenic | 40.0% | |
| ACTCCTTCAAAAGTGGTAAC+AGG | + | chr7_2:62383689-62383708 | Msa1067630:CDS | 40.0% | |
| GAGCGTCTAGTTGAATTGTT+TGG | + | chr7_2:62383996-62384015 | Msa1067630:intron | 40.0% | |
| AATTGACCACAATTACGTGC+CGG | + | chr7_2:62384173-62384192 | Msa1067630:intron | 40.0% | |
| GCATAAAAACATGCAAGGTC+CGG | + | chr7_2:62384280-62384299 | Msa1067630:intron | 40.0% | |
| CATAAAAACATGCAAGGTCC+GGG | + | chr7_2:62384281-62384300 | Msa1067630:intron | 40.0% | |
| ATAAAAACATGCAAGGTCCG+GGG | + | chr7_2:62384282-62384301 | Msa1067630:intron | 40.0% | |
| !!! | TCTTTTTTTTTGTGGTGGCC+GGG | - | chr7_2:62384315-62384334 | None:intergenic | 40.0% |
| TTGTCCTGTTGTATGGTCTA+CGG | - | chr7_2:62384528-62384547 | None:intergenic | 40.0% | |
| ACCAATTAACCTTACCACTC+AGG | + | chr7_2:62384587-62384606 | Msa1067630:intron | 40.0% | |
| ! | TTAATTGGTGTTTGCCTGAG+TGG | - | chr7_2:62384604-62384623 | None:intergenic | 40.0% |
| ! | TATAGAGGTCGATTCCCATA+AGG | + | chr7_2:62384807-62384826 | Msa1067630:intron | 40.0% |
| ATAATCAGGGAGATAGCATC+AGG | + | chr7_2:62385243-62385262 | Msa1067630:intron | 40.0% | |
| AGCACCAATATCCTTTACCA+AGG | - | chr7_2:62385355-62385374 | None:intergenic | 40.0% | |
| CAAAGAAGTCAGAGATGCTT+GGG | - | chr7_2:62385479-62385498 | None:intergenic | 40.0% | |
| GTAATATCTGCCTCAGGTTT+AGG | - | chr7_2:62383565-62383584 | None:intergenic | 40.0% | |
| ACATCTGTAATATCTGCCTC+AGG | - | chr7_2:62383571-62383590 | None:intergenic | 40.0% | |
| GAGTACTTGATGTCGCAAAT+TGG | - | chr7_2:62383673-62383692 | None:intergenic | 40.0% | |
| ACTCCTTCAAAAGTGGTAAC+AGG | + | chr7_2:62383689-62383708 | Msa1067630:CDS | 40.0% | |
| GAGCGTCTAGTTGAATTGTT+TGG | + | chr7_2:62383996-62384015 | Msa1067630:intron | 40.0% | |
| AATTGACCACAATTACGTGC+CGG | + | chr7_2:62384173-62384192 | Msa1067630:intron | 40.0% | |
| GCATAAAAACATGCAAGGTC+CGG | + | chr7_2:62384280-62384299 | Msa1067630:intron | 40.0% | |
| CATAAAAACATGCAAGGTCC+GGG | + | chr7_2:62384281-62384300 | Msa1067630:intron | 40.0% | |
| ATAAAAACATGCAAGGTCCG+GGG | + | chr7_2:62384282-62384301 | Msa1067630:intron | 40.0% | |
| !!! | TCTTTTTTTTTGTGGTGGCC+GGG | - | chr7_2:62384315-62384334 | None:intergenic | 40.0% |
| TTGTCCTGTTGTATGGTCTA+CGG | - | chr7_2:62384528-62384547 | None:intergenic | 40.0% | |
| ACCAATTAACCTTACCACTC+AGG | + | chr7_2:62384587-62384606 | Msa1067630:intron | 40.0% | |
| ! | TTAATTGGTGTTTGCCTGAG+TGG | - | chr7_2:62384604-62384623 | None:intergenic | 40.0% |
| ! | TATAGAGGTCGATTCCCATA+AGG | + | chr7_2:62384807-62384826 | Msa1067630:intron | 40.0% |
| ATAATCAGGGAGATAGCATC+AGG | + | chr7_2:62385243-62385262 | Msa1067630:intron | 40.0% | |
| AGCACCAATATCCTTTACCA+AGG | - | chr7_2:62385355-62385374 | None:intergenic | 40.0% | |
| CAAAGAAGTCAGAGATGCTT+GGG | - | chr7_2:62385479-62385498 | None:intergenic | 40.0% | |
| CTGAGGAAGCTGAGAAAGTT+GGG | + | chr7_2:62383533-62383552 | Msa1067630:CDS | 45.0% | |
| TGAGGAAGCTGAGAAAGTTG+GGG | + | chr7_2:62383534-62383553 | Msa1067630:CDS | 45.0% | |
| ACGTCAGTCTGTCGAGTATT+TGG | + | chr7_2:62383609-62383628 | Msa1067630:CDS | 45.0% | |
| AGACACGTTACTGCTTCCTA+CGG | + | chr7_2:62384086-62384105 | Msa1067630:intron | 45.0% | |
| ACAAAACCGGCACGTAATTG+TGG | - | chr7_2:62384182-62384201 | None:intergenic | 45.0% | |
| !!! | CTTTTTTTTTGTGGTGGCCG+GGG | - | chr7_2:62384314-62384333 | None:intergenic | 45.0% |
| TGTCCTGTTGTATGGTCTAC+GGG | - | chr7_2:62384527-62384546 | None:intergenic | 45.0% | |
| GCCTGAGTGGTAAGGTTAAT+TGG | - | chr7_2:62384591-62384610 | None:intergenic | 45.0% | |
| !! | CACTGGCTTTCAATGATCCT+GGG | - | chr7_2:62385281-62385300 | None:intergenic | 45.0% |
| !! | TCACTGGCTTTCAATGATCC+TGG | - | chr7_2:62385282-62385301 | None:intergenic | 45.0% |
| GCAAAGAAGTCAGAGATGCT+TGG | - | chr7_2:62385480-62385499 | None:intergenic | 45.0% | |
| CTGAGGAAGCTGAGAAAGTT+GGG | + | chr7_2:62383533-62383552 | Msa1067630:CDS | 45.0% | |
| TGAGGAAGCTGAGAAAGTTG+GGG | + | chr7_2:62383534-62383553 | Msa1067630:CDS | 45.0% | |
| ACGTCAGTCTGTCGAGTATT+TGG | + | chr7_2:62383609-62383628 | Msa1067630:CDS | 45.0% | |
| AGACACGTTACTGCTTCCTA+CGG | + | chr7_2:62384086-62384105 | Msa1067630:intron | 45.0% | |
| ACAAAACCGGCACGTAATTG+TGG | - | chr7_2:62384182-62384201 | None:intergenic | 45.0% | |
| !!! | CTTTTTTTTTGTGGTGGCCG+GGG | - | chr7_2:62384314-62384333 | None:intergenic | 45.0% |
| TGTCCTGTTGTATGGTCTAC+GGG | - | chr7_2:62384527-62384546 | None:intergenic | 45.0% | |
| GCCTGAGTGGTAAGGTTAAT+TGG | - | chr7_2:62384591-62384610 | None:intergenic | 45.0% | |
| !! | CACTGGCTTTCAATGATCCT+GGG | - | chr7_2:62385281-62385300 | None:intergenic | 45.0% |
| !! | TCACTGGCTTTCAATGATCC+TGG | - | chr7_2:62385282-62385301 | None:intergenic | 45.0% |
| GCAAAGAAGTCAGAGATGCT+TGG | - | chr7_2:62385480-62385499 | None:intergenic | 45.0% | |
| GCTGAGGAAGCTGAGAAAGT+TGG | + | chr7_2:62383532-62383551 | Msa1067630:CDS | 50.0% | |
| GTCCTGTTGTATGGTCTACG+GGG | - | chr7_2:62384526-62384545 | None:intergenic | 50.0% | |
| TGGTGTTTGCCTGAGTGGTA+AGG | - | chr7_2:62384599-62384618 | None:intergenic | 50.0% | |
| GCTTTCAATGATCCTGGGTC+TGG | - | chr7_2:62385276-62385295 | None:intergenic | 50.0% | |
| GCTGAGGAAGCTGAGAAAGT+TGG | + | chr7_2:62383532-62383551 | Msa1067630:CDS | 50.0% | |
| GTCCTGTTGTATGGTCTACG+GGG | - | chr7_2:62384526-62384545 | None:intergenic | 50.0% | |
| TGGTGTTTGCCTGAGTGGTA+AGG | - | chr7_2:62384599-62384618 | None:intergenic | 50.0% | |
| GCTTTCAATGATCCTGGGTC+TGG | - | chr7_2:62385276-62385295 | None:intergenic | 50.0% | |
| !! | TGGGGAAGTGCCTAAACCTG+AGG | + | chr7_2:62383552-62383571 | Msa1067630:CDS | 55.0% |
| CACCCCGTAGACCATACAAC+AGG | + | chr7_2:62384521-62384540 | Msa1067630:intron | 55.0% | |
| TCAGGAACTGTACCAGACCC+AGG | + | chr7_2:62385261-62385280 | Msa1067630:CDS | 55.0% | |
| !! | TGGGGAAGTGCCTAAACCTG+AGG | + | chr7_2:62383552-62383571 | Msa1067630:CDS | 55.0% |
| CACCCCGTAGACCATACAAC+AGG | + | chr7_2:62384521-62384540 | Msa1067630:intron | 55.0% | |
| TCAGGAACTGTACCAGACCC+AGG | + | chr7_2:62385261-62385280 | Msa1067630:CDS | 55.0% | |
| AAGGTCCGGGGTTCGAACCC+CGG | + | chr7_2:62384294-62384313 | Msa1067630:intron | 65.0% | |
| AAGGTCCGGGGTTCGAACCC+CGG | + | chr7_2:62384294-62384313 | Msa1067630:intron | 65.0% | |
| GGTGGCCGGGGTTCGAACCC+CGG | - | chr7_2:62384302-62384321 | None:intergenic | 75.0% | |
| GGTGGCCGGGGTTCGAACCC+CGG | - | chr7_2:62384302-62384321 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 62383496 | 62385503 | 62383496 | ID=Msa1067630;Name=Msa1067630 |
| chr7_2 | mRNA | 62383496 | 62385503 | 62383496 | ID=Msa1067630-mRNA-1;Parent=Msa1067630;Name=Msa1067630-mRNA-1;_AED=0.38;_eAED=0.39;_QI=0|0|0|1|1|1|2|0|155 |
| chr7_2 | exon | 62383496 | 62383710 | 62383496 | ID=Msa1067630-mRNA-1:exon:12644;Parent=Msa1067630-mRNA-1 |
| chr7_2 | exon | 62385251 | 62385503 | 62385251 | ID=Msa1067630-mRNA-1:exon:12645;Parent=Msa1067630-mRNA-1 |
| chr7_2 | CDS | 62383496 | 62383710 | 62383496 | ID=Msa1067630-mRNA-1:cds;Parent=Msa1067630-mRNA-1 |
| chr7_2 | CDS | 62385251 | 62385503 | 62385251 | ID=Msa1067630-mRNA-1:cds;Parent=Msa1067630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
