Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069490 | XP_003624429.1 | 96.774 | 186 | 6 | 0 | 1 | 186 | 1 | 186 | 1.25e-129 | 371 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069490 | sp|B9RH17|CSPLA_RICCO | 49.080 | 163 | 83 | 0 | 21 | 183 | 25 | 187 | 4.75e-46 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069490 | G7KW47 | 96.774 | 186 | 6 | 0 | 1 | 186 | 1 | 186 | 5.96e-130 | 371 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1029090 | Msa1069490 | 0.807068 | 6.055846e-50 | -8.615850e-47 |
| Msa1069490 | Msa1156180 | 0.809804 | 1.578492e-50 | -8.615850e-47 |
| Msa1069490 | Msa1157400 | 0.846851 | 1.674766e-59 | -8.615850e-47 |
| Msa0946680 | Msa1069490 | 0.815866 | 7.421792e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069490 | MtrunA17_Chr7g0251531 | 96.774 | 186 | 6 | 0 | 1 | 186 | 1 | 186 | 1.15e-133 | 371 |
| Msa1069490 | MtrunA17_Chr4g0066721 | 29.655 | 145 | 88 | 3 | 33 | 166 | 36 | 177 | 4.12e-16 | 72.8 |
| Msa1069490 | MtrunA17_Chr4g0021111 | 29.927 | 137 | 88 | 1 | 33 | 169 | 11 | 139 | 1.24e-15 | 70.9 |
| Msa1069490 | MtrunA17_Chr4g0042551 | 32.099 | 162 | 105 | 3 | 11 | 169 | 40 | 199 | 3.16e-14 | 68.2 |
| Msa1069490 | MtrunA17_Chr7g0268681 | 30.496 | 141 | 92 | 3 | 33 | 169 | 32 | 170 | 5.39e-14 | 67.0 |
| Msa1069490 | MtrunA17_Chr4g0066711 | 36.000 | 125 | 79 | 1 | 33 | 157 | 31 | 154 | 7.15e-13 | 63.9 |
| Msa1069490 | MtrunA17_Chr2g0286341 | 27.778 | 162 | 104 | 2 | 33 | 184 | 26 | 184 | 2.13e-12 | 62.8 |
| Msa1069490 | MtrunA17_Chr7g0217691 | 30.435 | 161 | 107 | 3 | 11 | 169 | 11 | 168 | 9.54e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069490 | AT4G25040.1 | 36.424 | 151 | 92 | 1 | 31 | 181 | 18 | 164 | 3.58e-21 | 85.9 |
| Msa1069490 | AT4G03540.1 | 34.959 | 123 | 72 | 1 | 47 | 169 | 26 | 140 | 6.48e-18 | 77.0 |
| Msa1069490 | AT4G15630.1 | 26.984 | 189 | 119 | 4 | 6 | 184 | 10 | 189 | 1.15e-15 | 72.0 |
| Msa1069490 | AT4G15620.1 | 30.435 | 161 | 100 | 3 | 34 | 184 | 31 | 189 | 3.50e-15 | 70.5 |
| Msa1069490 | AT1G03700.1 | 32.143 | 112 | 68 | 1 | 45 | 156 | 24 | 127 | 3.30e-14 | 67.4 |
| Msa1069490 | AT4G15610.1 | 28.105 | 153 | 105 | 2 | 10 | 157 | 9 | 161 | 4.30e-12 | 62.4 |
| Msa1069490 | AT5G15290.1 | 30.216 | 139 | 90 | 3 | 33 | 167 | 31 | 166 | 7.86e-12 | 61.6 |
| Msa1069490 | AT3G06390.1 | 25.455 | 165 | 108 | 5 | 5 | 157 | 9 | 170 | 4.28e-11 | 59.7 |
Find 46 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGCCTTCTTTGCCAATT+TGG | 0.186565 | 7_2:-65144981 | Msa1069490:CDS |
| TTTATATGAAATTTCTTATA+TGG | 0.199631 | 7_2:-65144871 | Msa1069490:three_prime_UTR |
| TTGGCCTTCTTTGCCAATTT+GGG | 0.251825 | 7_2:-65144980 | Msa1069490:CDS |
| AAAGTTCTGCAAAACCAATT+TGG | 0.258540 | 7_2:-65145023 | Msa1069490:CDS |
| TAAAATTGTGAGTCCCAAAT+TGG | 0.269455 | 7_2:+65144967 | None:intergenic |
| CATAGTTTAGAGTGAGGAAT+TGG | 0.300862 | 7_2:+65146429 | None:intergenic |
| TTCCATCCTGAAGGAATCTT+TGG | 0.318409 | 7_2:+65146399 | None:intergenic |
| AAGCAAAAGTGAAACCAAAT+TGG | 0.326060 | 7_2:+65145009 | None:intergenic |
| GGATGAGGTTGTTGAAGATT+TGG | 0.339479 | 7_2:+65146375 | None:intergenic |
| TTTAAATTCATTCTTCCTTA+AGG | 0.364098 | 7_2:+65144768 | None:intergenic |
| ACATCATAGGACTTTCTTCA+TGG | 0.382860 | 7_2:-65146344 | Msa1069490:CDS |
| CTGTTATGCTCTTCTCTATC+CGG | 0.383937 | 7_2:-65146246 | Msa1069490:CDS |
| GATGAGGTTGTTGAAGATTT+GGG | 0.392076 | 7_2:+65146376 | None:intergenic |
| TAATTAAGAGGTGAACTTGT+AGG | 0.396788 | 7_2:+65144940 | None:intergenic |
| CAATTCCTCACTCTAAACTA+TGG | 0.398146 | 7_2:-65146428 | Msa1069490:exon |
| GTTGGATACGTGGGACAGTA+TGG | 0.412618 | 7_2:-65145088 | Msa1069490:CDS |
| ATAGTTTAGAGTGAGGAATT+GGG | 0.432294 | 7_2:+65146430 | None:intergenic |
| CTGATGCCAAAGATTCCTTC+AGG | 0.434784 | 7_2:-65146405 | Msa1069490:CDS |
| AAGACATGAAGTGAGTAGTA+TGG | 0.435525 | 7_2:+65146611 | None:intergenic |
| AGTAAAGTGAGAAGGACAAA+AGG | 0.439203 | 7_2:+65146529 | None:intergenic |
| TCAAAACATCCTCAGAATCT+TGG | 0.440400 | 7_2:-65146320 | Msa1069490:CDS |
| ATATGGAATCTATTTCTAGT+AGG | 0.444026 | 7_2:-65144854 | Msa1069490:three_prime_UTR |
| TACAATATACAACTACCTTA+AGG | 0.453371 | 7_2:-65144783 | Msa1069490:three_prime_UTR |
| GAGAGGAGAAAATAATTAAG+AGG | 0.459921 | 7_2:+65144928 | None:intergenic |
| ATGACGGTGTTGCTGATAGC+TGG | 0.468432 | 7_2:-65145130 | Msa1069490:CDS |
| ATAAGAAATTTCATATAAAA+CGG | 0.479727 | 7_2:+65144875 | None:intergenic |
| ACAAAGACAACTAGGTAGCC+TGG | 0.489029 | 7_2:+65146648 | None:intergenic |
| ATGGAGAGAAACACGTTGGA+TGG | 0.514689 | 7_2:-65145069 | Msa1069490:CDS |
| GAGCATAACAGATTGGTTGT+TGG | 0.526003 | 7_2:+65146258 | None:intergenic |
| GAGTCCCAAATTGGCAAAGA+AGG | 0.541836 | 7_2:+65144976 | None:intergenic |
| AGGAGGAAAGTAAAGTGAGA+AGG | 0.544239 | 7_2:+65146521 | None:intergenic |
| TAGTTTAGAGTGAGGAATTG+GGG | 0.549651 | 7_2:+65146431 | None:intergenic |
| TAGAGAAGAGCATAACAGAT+TGG | 0.552990 | 7_2:+65146251 | None:intergenic |
| AGATTTGGGTTCCATCCTGA+AGG | 0.555523 | 7_2:+65146390 | None:intergenic |
| AGCCACAGCCGTTGGATACG+TGG | 0.562855 | 7_2:-65145098 | Msa1069490:CDS |
| CTCAATTTATCACATTCACA+TGG | 0.574541 | 7_2:-65144908 | Msa1069490:three_prime_UTR |
| TGTTCAGCAGCCACAGCCGT+TGG | 0.589627 | 7_2:-65145106 | Msa1069490:CDS |
| TCCCACGTATCCAACGGCTG+TGG | 0.593429 | 7_2:+65145096 | None:intergenic |
| AAAAGTAAACAAAGACAACT+AGG | 0.602388 | 7_2:+65146640 | None:intergenic |
| TGCCAAAGATTCCTTCAGGA+TGG | 0.603471 | 7_2:-65146401 | Msa1069490:CDS |
| GAACAATGACCAAGATTCTG+AGG | 0.616784 | 7_2:+65146311 | None:intergenic |
| AGTTTAGAGTGAGGAATTGG+GGG | 0.618942 | 7_2:+65146432 | None:intergenic |
| ATACTGTCCCACGTATCCAA+CGG | 0.624247 | 7_2:+65145090 | None:intergenic |
| ATCAGCCATAGTTTAGAGTG+AGG | 0.662471 | 7_2:+65146423 | None:intergenic |
| TGTGAATGTGATAAATTGAG+AGG | 0.675654 | 7_2:+65144911 | None:intergenic |
| CAGTATGGAGAGAAACACGT+TGG | 0.708078 | 7_2:-65145073 | Msa1069490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATATTATTCTTATAGAA+TGG | - | chr7_2:65145939-65145958 | Msa1069490:intron | 10.0% |
| !!! | TGATTTTTTTAAATTATTAG+CGG | - | chr7_2:65146092-65146111 | Msa1069490:intron | 10.0% |
| !! | ATAAGAAATTTCATATAAAA+CGG | + | chr7_2:65146547-65146566 | None:intergenic | 10.0% |
| !! | TTTATATGAAATTTCTTATA+TGG | - | chr7_2:65146548-65146567 | Msa1069490:five_prime_UTR | 10.0% |
| !! | TTTGTTTATACATATGAAAA+TGG | + | chr7_2:65145264-65145283 | None:intergenic | 15.0% |
| !! | TTCATATGTATAAACAAAAA+AGG | - | chr7_2:65145266-65145285 | Msa1069490:intron | 15.0% |
| !! | TCATATGTATAAACAAAAAA+GGG | - | chr7_2:65145267-65145286 | Msa1069490:intron | 15.0% |
| !! | TACATATGAAAATGGAAAAT+GGG | + | chr7_2:65145256-65145275 | None:intergenic | 20.0% |
| !! | ATACATATGAAAATGGAAAA+TGG | + | chr7_2:65145257-65145276 | None:intergenic | 20.0% |
| !!! | TCTGTATTTATTTTTGTCTT+TGG | - | chr7_2:65145321-65145340 | Msa1069490:intron | 20.0% |
| !!! | CTATTATTTCTTCCTATTTT+TGG | - | chr7_2:65145446-65145465 | Msa1069490:intron | 20.0% |
| !! | ACTTGACTAAAACATTAAAA+GGG | + | chr7_2:65145825-65145844 | None:intergenic | 20.0% |
| !! | TTCAGTATAATTATACATGT+CGG | + | chr7_2:65146067-65146086 | None:intergenic | 20.0% |
| !! | TTTAAATTCATTCTTCCTTA+AGG | + | chr7_2:65146654-65146673 | None:intergenic | 20.0% |
| ! | AAAAGTAAACAAAGACAACT+AGG | + | chr7_2:65144782-65144801 | None:intergenic | 25.0% |
| !! | AGAGCTTTACTAACTTTTAT+AGG | + | chr7_2:65144921-65144940 | None:intergenic | 25.0% |
| ! | AAAAAAACAGATGGAAATTG+AGG | + | chr7_2:65144954-65144973 | None:intergenic | 25.0% |
| ! | AAATGACACAAAAAAACAGA+TGG | + | chr7_2:65144963-65144982 | None:intergenic | 25.0% |
| ! | AATAAAAATGAGCTTCAAAC+CGG | + | chr7_2:65145195-65145214 | None:intergenic | 25.0% |
| !! | TGATAATCAATCTTTTGATG+AGG | - | chr7_2:65145400-65145419 | Msa1069490:intron | 25.0% |
| !! | AAATAATAGTCTTTTCGTTG+AGG | + | chr7_2:65145435-65145454 | None:intergenic | 25.0% |
| ! | TTACCAAATCAACCAAAAAT+AGG | + | chr7_2:65145461-65145480 | None:intergenic | 25.0% |
| !!! | AAGCCAATAACATTTTAACA+TGG | + | chr7_2:65145555-65145574 | None:intergenic | 25.0% |
| !! | TTTACTAGTGTCAATTTTAG+TGG | - | chr7_2:65145737-65145756 | Msa1069490:intron | 25.0% |
| !!! | TTACTAGTGTCAATTTTAGT+GGG | - | chr7_2:65145738-65145757 | Msa1069490:intron | 25.0% |
| ! | GACTTGACTAAAACATTAAA+AGG | + | chr7_2:65145826-65145845 | None:intergenic | 25.0% |
| ! | AAACAATGACATGTATAGTT+TGG | + | chr7_2:65145881-65145900 | None:intergenic | 25.0% |
| ! | ATACATGTCATTGTTTATCA+TGG | - | chr7_2:65145885-65145904 | Msa1069490:intron | 25.0% |
| !! | GGAATATGATTGATAATATG+TGG | - | chr7_2:65145906-65145925 | Msa1069490:intron | 25.0% |
| !! | TTTTAAATTATTAGCGGTGT+CGG | - | chr7_2:65146098-65146117 | Msa1069490:intron | 25.0% |
| !!! | TTCACTTTTGCTTTCATATT+TGG | - | chr7_2:65146420-65146439 | Msa1069490:exon | 25.0% |
| !!! | ATATGGAATCTATTTCTAGT+AGG | - | chr7_2:65146565-65146584 | Msa1069490:five_prime_UTR | 25.0% |
| !!! | AGTAGGAAATTTTTTCAGTT+TGG | - | chr7_2:65146582-65146601 | Msa1069490:five_prime_UTR | 25.0% |
| !!! | AATTTTTTCAGTTTGGTGTA+TGG | - | chr7_2:65146589-65146608 | Msa1069490:five_prime_UTR | 25.0% |
| ! | TACAATATACAACTACCTTA+AGG | - | chr7_2:65146636-65146655 | Msa1069490:five_prime_UTR | 25.0% |
| ! | GCTTTACTAACTTTTATAGG+AGG | + | chr7_2:65144918-65144937 | None:intergenic | 30.0% |
| ! | ATAGTTTAGAGTGAGGAATT+GGG | + | chr7_2:65144992-65145011 | None:intergenic | 30.0% |
| !!! | AGATTTTTTGTTGCTGCAAA+TGG | - | chr7_2:65145348-65145367 | Msa1069490:intron | 30.0% |
| !!! | CTTCCTATTTTTGGTTGATT+TGG | - | chr7_2:65145455-65145474 | Msa1069490:intron | 30.0% |
| GGTCCATGTTAAAATGTTAT+TGG | - | chr7_2:65145549-65145568 | Msa1069490:intron | 30.0% | |
| AAAATTGAAGTCGAGACTTT+GGG | + | chr7_2:65145719-65145738 | None:intergenic | 30.0% | |
| AAAAATTGAAGTCGAGACTT+TGG | + | chr7_2:65145720-65145739 | None:intergenic | 30.0% | |
| !!! | TTCACAGATGTTTTTTACTC+TGG | - | chr7_2:65146036-65146055 | Msa1069490:CDS | 30.0% |
| ! | TGGATTAGAAAGGTAAATGA+TGG | + | chr7_2:65146191-65146210 | None:intergenic | 30.0% |
| !!! | CCTAATTTTGTGGATTAGAA+AGG | + | chr7_2:65146201-65146220 | None:intergenic | 30.0% |
| CCTTTCTAATCCACAAAATT+AGG | - | chr7_2:65146198-65146217 | Msa1069490:intron | 30.0% | |
| !! | GCATGTTTGTTATGAGAAAT+TGG | - | chr7_2:65146249-65146268 | Msa1069490:CDS | 30.0% |
| !! | GAAATTGGTGAATTTTGATC+AGG | - | chr7_2:65146264-65146283 | Msa1069490:CDS | 30.0% |
| AAAGTTCTGCAAAACCAATT+TGG | - | chr7_2:65146396-65146415 | Msa1069490:CDS | 30.0% | |
| AAGCAAAAGTGAAACCAAAT+TGG | + | chr7_2:65146413-65146432 | None:intergenic | 30.0% | |
| TAAAATTGTGAGTCCCAAAT+TGG | + | chr7_2:65146455-65146474 | None:intergenic | 30.0% | |
| TAATTAAGAGGTGAACTTGT+AGG | + | chr7_2:65146482-65146501 | None:intergenic | 30.0% | |
| GAGAGGAGAAAATAATTAAG+AGG | + | chr7_2:65146494-65146513 | None:intergenic | 30.0% | |
| TGTGAATGTGATAAATTGAG+AGG | + | chr7_2:65146511-65146530 | None:intergenic | 30.0% | |
| CTCAATTTATCACATTCACA+TGG | - | chr7_2:65146511-65146530 | Msa1069490:five_prime_UTR | 30.0% | |
| AAGACATGAAGTGAGTAGTA+TGG | + | chr7_2:65144811-65144830 | None:intergenic | 35.0% | |
| AGTAAAGTGAGAAGGACAAA+AGG | + | chr7_2:65144893-65144912 | None:intergenic | 35.0% | |
| ! | TAGTTTAGAGTGAGGAATTG+GGG | + | chr7_2:65144991-65145010 | None:intergenic | 35.0% |
| ! | CATAGTTTAGAGTGAGGAAT+TGG | + | chr7_2:65144993-65145012 | None:intergenic | 35.0% |
| CAATTCCTCACTCTAAACTA+TGG | - | chr7_2:65144991-65145010 | Msa1069490:CDS | 35.0% | |
| GATGAGGTTGTTGAAGATTT+GGG | + | chr7_2:65145046-65145065 | None:intergenic | 35.0% | |
| !! | ATGATGTTTTTGTGAGGATG+AGG | + | chr7_2:65145062-65145081 | None:intergenic | 35.0% |
| CATCCTCACAAAAACATCAT+AGG | - | chr7_2:65145062-65145081 | Msa1069490:CDS | 35.0% | |
| !! | AGTCCTATGATGTTTTTGTG+AGG | + | chr7_2:65145068-65145087 | None:intergenic | 35.0% |
| ACATCATAGGACTTTCTTCA+TGG | - | chr7_2:65145075-65145094 | Msa1069490:CDS | 35.0% | |
| TCAAAACATCCTCAGAATCT+TGG | - | chr7_2:65145099-65145118 | Msa1069490:CDS | 35.0% | |
| ! | TAGAGAAGAGCATAACAGAT+TGG | + | chr7_2:65145171-65145190 | None:intergenic | 35.0% |
| !! | TGAAAATGGAAAATGGGTTG+TGG | + | chr7_2:65145250-65145269 | None:intergenic | 35.0% |
| ! | TTGGCTTAGACATGTTTTGT+CGG | - | chr7_2:65145568-65145587 | Msa1069490:intron | 35.0% |
| !!! | AGTAGTTTTGAGTTAGACCT+TGG | - | chr7_2:65145682-65145701 | Msa1069490:intron | 35.0% |
| !!! | GTCAATTTTAGTGGGTTAGT+TGG | - | chr7_2:65145746-65145765 | Msa1069490:intron | 35.0% |
| TCAATATGCGTTTACTTTGC+TGG | + | chr7_2:65145994-65146013 | None:intergenic | 35.0% | |
| GGCAGTATCTATATTATGTC+TGG | - | chr7_2:65146124-65146143 | Msa1069490:intron | 35.0% | |
| TATCCGTATTCATGCTTCAT+AGG | - | chr7_2:65146153-65146172 | Msa1069490:intron | 35.0% | |
| TGACCTATGAAGCATGAATA+CGG | + | chr7_2:65146159-65146178 | None:intergenic | 35.0% | |
| ! | CTTATTCGCTCCTAATTTTG+TGG | + | chr7_2:65146211-65146230 | None:intergenic | 35.0% |
| !! | GAATTTTGATCAGGTGATGA+CGG | - | chr7_2:65146273-65146292 | Msa1069490:CDS | 35.0% |
| ! | TTTTGCAGAACTTTTGCACA+TGG | + | chr7_2:65146390-65146409 | None:intergenic | 35.0% |
| AGGAGGAAAGTAAAGTGAGA+AGG | + | chr7_2:65144901-65144920 | None:intergenic | 40.0% | |
| ! | AGTTTAGAGTGAGGAATTGG+GGG | + | chr7_2:65144990-65145009 | None:intergenic | 40.0% |
| ! | ATCAGCCATAGTTTAGAGTG+AGG | + | chr7_2:65144999-65145018 | None:intergenic | 40.0% |
| TTCCATCCTGAAGGAATCTT+TGG | + | chr7_2:65145023-65145042 | None:intergenic | 40.0% | |
| GGATGAGGTTGTTGAAGATT+TGG | + | chr7_2:65145047-65145066 | None:intergenic | 40.0% | |
| GAACAATGACCAAGATTCTG+AGG | + | chr7_2:65145111-65145130 | None:intergenic | 40.0% | |
| ! | GAGCATAACAGATTGGTTGT+TGG | + | chr7_2:65145164-65145183 | None:intergenic | 40.0% |
| CTGTTATGCTCTTCTCTATC+CGG | - | chr7_2:65145173-65145192 | Msa1069490:intron | 40.0% | |
| ! | TTTTGTTGCTGCAAATGGTG+TGG | - | chr7_2:65145353-65145372 | Msa1069490:intron | 40.0% |
| TGTCTGAAAACAGAAATCGC+AGG | - | chr7_2:65145528-65145547 | Msa1069490:intron | 40.0% | |
| GAGTTGTAACCTACTTAGGT+TGG | - | chr7_2:65145651-65145670 | Msa1069490:intron | 40.0% | |
| !! | GTAACCTACTTAGGTTGGTT+TGG | - | chr7_2:65145656-65145675 | Msa1069490:intron | 40.0% |
| TCAACCAAACCAACCTAAGT+AGG | + | chr7_2:65145663-65145682 | None:intergenic | 40.0% | |
| TGGTTAATTACCTCAGCACT+AGG | + | chr7_2:65145861-65145880 | None:intergenic | 40.0% | |
| ! | TTTGGCCTTCTTTGCCAATT+TGG | - | chr7_2:65146438-65146457 | Msa1069490:five_prime_UTR | 40.0% |
| ! | TTGGCCTTCTTTGCCAATTT+GGG | - | chr7_2:65146439-65146458 | Msa1069490:five_prime_UTR | 40.0% |
| ACAAAGACAACTAGGTAGCC+TGG | + | chr7_2:65144774-65144793 | None:intergenic | 45.0% | |
| CTGATGCCAAAGATTCCTTC+AGG | - | chr7_2:65145014-65145033 | Msa1069490:CDS | 45.0% | |
| TGCCAAAGATTCCTTCAGGA+TGG | - | chr7_2:65145018-65145037 | Msa1069490:CDS | 45.0% | |
| ! | AGATTTGGGTTCCATCCTGA+AGG | + | chr7_2:65145032-65145051 | None:intergenic | 45.0% |
| CGCAGAGTTGTAACCTACTT+AGG | - | chr7_2:65145647-65145666 | Msa1069490:intron | 45.0% | |
| ! | TTTGGGAGGAGTATACTCCA+AGG | + | chr7_2:65145702-65145721 | None:intergenic | 45.0% |
| ATTGAAGTCGAGACTTTGGG+AGG | + | chr7_2:65145716-65145735 | None:intergenic | 45.0% | |
| TTACCTCAGCACTAGGCAAA+CGG | + | chr7_2:65145854-65145873 | None:intergenic | 45.0% | |
| !! | AATTATTAGCGGTGTCGGTG+TGG | - | chr7_2:65146103-65146122 | Msa1069490:intron | 45.0% |
| ATACTGTCCCACGTATCCAA+CGG | + | chr7_2:65146332-65146351 | None:intergenic | 45.0% | |
| CAGTATGGAGAGAAACACGT+TGG | - | chr7_2:65146346-65146365 | Msa1069490:CDS | 45.0% | |
| ATGGAGAGAAACACGTTGGA+TGG | - | chr7_2:65146350-65146369 | Msa1069490:CDS | 45.0% | |
| GAGTCCCAAATTGGCAAAGA+AGG | + | chr7_2:65146446-65146465 | None:intergenic | 45.0% | |
| !! | ATGACGGTGTTGCTGATAGC+TGG | - | chr7_2:65146289-65146308 | Msa1069490:CDS | 50.0% |
| GTTGGATACGTGGGACAGTA+TGG | - | chr7_2:65146331-65146350 | Msa1069490:CDS | 50.0% | |
| TCTCCGTTTGCCTAGTGCTG+AGG | - | chr7_2:65145848-65145867 | Msa1069490:intron | 55.0% | |
| TGTTCAGCAGCCACAGCCGT+TGG | - | chr7_2:65146313-65146332 | Msa1069490:CDS | 60.0% | |
| AGCCACAGCCGTTGGATACG+TGG | - | chr7_2:65146321-65146340 | Msa1069490:CDS | 60.0% | |
| GCCACAGCCGTTGGATACGT+GGG | - | chr7_2:65146322-65146341 | Msa1069490:CDS | 60.0% | |
| TCCCACGTATCCAACGGCTG+TGG | + | chr7_2:65146326-65146345 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 65144764 | 65146677 | 65144764 | ID=Msa1069490;Name=Msa1069490 |
| chr7_2 | mRNA | 65144764 | 65146677 | 65144764 | ID=Msa1069490-mRNA-1;Parent=Msa1069490;Name=Msa1069490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=246|1|1|1|1|1|3|179|186 |
| chr7_2 | exon | 65144764 | 65145155 | 65144764 | ID=Msa1069490-mRNA-1:exon:13682;Parent=Msa1069490-mRNA-1 |
| chr7_2 | exon | 65145965 | 65146091 | 65145965 | ID=Msa1069490-mRNA-1:exon:13681;Parent=Msa1069490-mRNA-1 |
| chr7_2 | exon | 65146211 | 65146677 | 65146211 | ID=Msa1069490-mRNA-1:exon:13680;Parent=Msa1069490-mRNA-1 |
| chr7_2 | five_prime_UTR | 65146432 | 65146677 | 65146432 | ID=Msa1069490-mRNA-1:five_prime_utr;Parent=Msa1069490-mRNA-1 |
| chr7_2 | CDS | 65146211 | 65146431 | 65146211 | ID=Msa1069490-mRNA-1:cds;Parent=Msa1069490-mRNA-1 |
| chr7_2 | CDS | 65145965 | 65146091 | 65145965 | ID=Msa1069490-mRNA-1:cds;Parent=Msa1069490-mRNA-1 |
| chr7_2 | CDS | 65144943 | 65145155 | 65144943 | ID=Msa1069490-mRNA-1:cds;Parent=Msa1069490-mRNA-1 |
| chr7_2 | three_prime_UTR | 65144764 | 65144942 | 65144764 | ID=Msa1069490-mRNA-1:three_prime_utr;Parent=Msa1069490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
