AlfalfaGEDB | Msa1069490

M. sativa cultivar zhongmu-4 / Msa1069490

KEGG: -
GO: GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
PFAM: PF04535.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069490	XP_003624429.1	96.774	186	6	0	1	186	1	186	1.25e-129	371

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069490	sp\|B9RH17\|CSPLA_RICCO	49.080	163	83	0	21	183	25	187	4.75e-46	153

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069490	G7KW47	96.774	186	6	0	1	186	1	186	5.96e-130	371

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0946680	Msa1069490	0.815866	7.421792e-52	-8.615850e-47
Msa1029090	Msa1069490	0.807068	6.055846e-50	-8.615850e-47
Msa1069490	Msa1156180	0.809804	1.578492e-50	-8.615850e-47
Msa1069490	Msa1157400	0.846851	1.674766e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069490	MtrunA17_Chr7g0251531	96.774	186	6	0	1	186	1	186	1.15e-133	371
Msa1069490	MtrunA17_Chr4g0066721	29.655	145	88	3	33	166	36	177	4.12e-16	72.8
Msa1069490	MtrunA17_Chr4g0021111	29.927	137	88	1	33	169	11	139	1.24e-15	70.9
Msa1069490	MtrunA17_Chr4g0042551	32.099	162	105	3	11	169	40	199	3.16e-14	68.2
Msa1069490	MtrunA17_Chr7g0268681	30.496	141	92	3	33	169	32	170	5.39e-14	67.0
Msa1069490	MtrunA17_Chr4g0066711	36.000	125	79	1	33	157	31	154	7.15e-13	63.9
Msa1069490	MtrunA17_Chr2g0286341	27.778	162	104	2	33	184	26	184	2.13e-12	62.8
Msa1069490	MtrunA17_Chr7g0217691	30.435	161	107	3	11	169	11	168	9.54e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1069490	AT4G25040.1	36.424	151	92	1	31	181	18	164	3.58e-21	85.9
Msa1069490	AT4G03540.1	34.959	123	72	1	47	169	26	140	6.48e-18	77.0
Msa1069490	AT4G15630.1	26.984	189	119	4	6	184	10	189	1.15e-15	72.0
Msa1069490	AT4G15620.1	30.435	161	100	3	34	184	31	189	3.50e-15	70.5
Msa1069490	AT1G03700.1	32.143	112	68	1	45	156	24	127	3.30e-14	67.4
Msa1069490	AT4G15610.1	28.105	153	105	2	10	157	9	161	4.30e-12	62.4
Msa1069490	AT5G15290.1	30.216	139	90	3	33	167	31	166	7.86e-12	61.6
Msa1069490	AT3G06390.1	25.455	165	108	5	5	157	9	170	4.28e-11	59.7

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Find 46 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTAAACAAAGACAACT+AGG	0.602388	7_2:+65146640	None:intergenic
AAAGTTCTGCAAAACCAATT+TGG	0.258540	7_2:-65145023	Msa1069490:CDS
AAGACATGAAGTGAGTAGTA+TGG	0.435525	7_2:+65146611	None:intergenic
AAGCAAAAGTGAAACCAAAT+TGG	0.326060	7_2:+65145009	None:intergenic
ACAAAGACAACTAGGTAGCC+TGG	0.489029	7_2:+65146648	None:intergenic
ACATCATAGGACTTTCTTCA+TGG	0.382860	7_2:-65146344	Msa1069490:CDS
AGATTTGGGTTCCATCCTGA+AGG	0.555523	7_2:+65146390	None:intergenic
AGCCACAGCCGTTGGATACG+TGG	0.562855	7_2:-65145098	Msa1069490:CDS
AGGAGGAAAGTAAAGTGAGA+AGG	0.544239	7_2:+65146521	None:intergenic
AGTAAAGTGAGAAGGACAAA+AGG	0.439203	7_2:+65146529	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTCCATGTTAAAATGTTAT+TGG	-	chr7_2:65145549-65145568	Msa1069490:intron	30.0%
AAAATTGAAGTCGAGACTTT+GGG	+	chr7_2:65145719-65145738	None:intergenic	30.0%
AAAAATTGAAGTCGAGACTT+TGG	+	chr7_2:65145720-65145739	None:intergenic	30.0%
CCTTTCTAATCCACAAAATT+AGG	-	chr7_2:65146198-65146217	Msa1069490:intron	30.0%
AAAGTTCTGCAAAACCAATT+TGG	-	chr7_2:65146396-65146415	Msa1069490:CDS	30.0%
AAGCAAAAGTGAAACCAAAT+TGG	+	chr7_2:65146413-65146432	None:intergenic	30.0%
TAAAATTGTGAGTCCCAAAT+TGG	+	chr7_2:65146455-65146474	None:intergenic	30.0%
TAATTAAGAGGTGAACTTGT+AGG	+	chr7_2:65146482-65146501	None:intergenic	30.0%
GAGAGGAGAAAATAATTAAG+AGG	+	chr7_2:65146494-65146513	None:intergenic	30.0%
TGTGAATGTGATAAATTGAG+AGG	+	chr7_2:65146511-65146530	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	65144764	65146677	65144764	ID=Msa1069490;Name=Msa1069490
chr7_2	mRNA	65144764	65146677	65144764	ID=Msa1069490-mRNA-1;Parent=Msa1069490;Name=Msa1069490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=246\|1\|1\|1\|1\|1\|3\|179\|186
chr7_2	exon	65144764	65145155	65144764	ID=Msa1069490-mRNA-1:exon:13682;Parent=Msa1069490-mRNA-1
chr7_2	exon	65145965	65146091	65145965	ID=Msa1069490-mRNA-1:exon:13681;Parent=Msa1069490-mRNA-1
chr7_2	exon	65146211	65146677	65146211	ID=Msa1069490-mRNA-1:exon:13680;Parent=Msa1069490-mRNA-1
chr7_2	five_prime_UTR	65146432	65146677	65146432	ID=Msa1069490-mRNA-1:five_prime_utr;Parent=Msa1069490-mRNA-1
chr7_2	CDS	65146211	65146431	65146211	ID=Msa1069490-mRNA-1:cds;Parent=Msa1069490-mRNA-1
chr7_2	CDS	65145965	65146091	65145965	ID=Msa1069490-mRNA-1:cds;Parent=Msa1069490-mRNA-1
chr7_2	CDS	65144943	65145155	65144943	ID=Msa1069490-mRNA-1:cds;Parent=Msa1069490-mRNA-1
chr7_2	three_prime_UTR	65144764	65144942	65144764	ID=Msa1069490-mRNA-1:three_prime_utr;Parent=Msa1069490-mRNA-1

Gene Sequence

>Msa1069490

ATGGCTGATGCCAAAGATTCCTTCAGGATGGAACCCAAATCTTCAACAACCTCATCCTCACAAAAACATCATAGGACTTTCTTCATGGCTCAAAACATCCTCAGAATCTTGGTCATTGTTCTAACTGCTGTTTCAATTGTAGTTACTGTCACCAACAACCAATCTGTTATGCTCTTCTCTATCCGGTTTGAAGCTCATTTTTATTACACATCATCTTTCAAATTTTTTGTTGCTGCAAATGGTGTGGTCTGTTTCATGTCTGTGCTGACACTGATAATCAATCTTTTGATGAGGCAACAAACACCTCAACGAAAAGACTATTATTTCTTCCTATTTTTGGTTGATTTGGTGATGACGGTGTTGCTGATAGCTGGATGTTCAGCAGCCACAGCCGTTGGATACGTGGGACAGTATGGAGAGAAACACGTTGGATGGACTGCAATCTGTGACCATGTGCAAAAGTTCTGCAAAACCAATTTGGTTTCACTTTTGCTTTCATATTTGGCCTTCTTTGCCAATTTGGGACTCACAATTTTAATAGCCTACAAGTTCACCTCTTAA

Protein sequence

>Msa1069490

MADAKDSFRMEPKSSTTSSSQKHHRTFFMAQNILRILVIVLTAVSIVVTVTNNQSVMLFSIRFEAHFYYTSSFKFFVAANGVVCFMSVLTLIINLLMRQQTPQRKDYYFFLFLVDLVMTVLLIAGCSAATAVGYVGQYGEKHVGWTAICDHVQKFCKTNLVSLLLSYLAFFANLGLTILIAYKFTS*