AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1069730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069730 MtrunA17_Chr7g0251901 100.000 378 0 0 1 378 1 378 0.0 781
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1069730 AT1G12840.1 81.167 377 68 2 1 377 1 374 0.0 645

Find 131 sgRNAs with CRISPR-Local

Find 384 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAATCTTCAAATCCTTTC+TGG 0.110993 7_2:+65521029 None:intergenic
TTTCGGCCCTCATGTGTTTC+TGG 0.156192 7_2:+65522710 None:intergenic
ACGGATCTAAATTAAGAAAT+AGG 0.160675 7_2:+65521085 None:intergenic
TGTTATTATTTATATATAAT+TGG 0.189663 7_2:-65520981 Msa1069730:three_prime_UTR
TAAGTTCATGTTTGCGATAT+TGG 0.195681 7_2:-65520874 Msa1069730:three_prime_UTR
CCTTTCTGGCTTTGGCATTA+TGG 0.213585 7_2:+65521043 None:intergenic
AGAACTAGTGCACGTGAAAA+AGG 0.216056 7_2:-65522929 Msa1069730:CDS
GAAGAACTGGAGCGAGTTTC+CGG 0.223607 7_2:-65525804 Msa1069730:CDS
CTTCAAATCCTTTCTGGCTT+TGG 0.235277 7_2:+65521035 None:intergenic
TAAATTTGTTGGTTAAAGTT+AGG 0.251360 7_2:-65520628 Msa1069730:three_prime_UTR
ACAACTCTTCTTCTTCGATT+TGG 0.276305 7_2:-65526210 Msa1069730:CDS
TGGATTGCCTCCGTCTTTCT+TGG 0.280563 7_2:-65522257 Msa1069730:intron
CGCACCTTCCAGTTTGCTTT+CGG 0.316806 7_2:+65523453 None:intergenic
TACAACTTCTTAGAAGATCT+TGG 0.321978 7_2:+65523013 None:intergenic
ATGCTATTCAATAAATTTGT+TGG 0.323133 7_2:-65520639 Msa1069730:three_prime_UTR
TCTGAAAGCATTCTGAGATA+TGG 0.325184 7_2:-65522277 Msa1069730:CDS
TATGCAGTCTAATGCTTTCA+TGG 0.327769 7_2:-65525859 Msa1069730:intron
CGGATCTAAATTAAGAAATA+GGG 0.332094 7_2:+65521086 None:intergenic
TATTGGATCTAGATTTGTTT+GGG 0.333247 7_2:-65525653 Msa1069730:intron
CATGGGCAGAGTCCGTTTCC+AGG 0.340781 7_2:-65520924 Msa1069730:three_prime_UTR
GTATTGGATCTAGATTTGTT+TGG 0.346442 7_2:-65525654 Msa1069730:intron
TTCTTAATTTAGATCCGTTA+AGG 0.350026 7_2:-65521080 Msa1069730:three_prime_UTR
CCTTTGAAGGAGATTGTTGA+TGG 0.366580 7_2:-65525604 Msa1069730:CDS
GCATAATACCTCTCCATAAC+TGG 0.367897 7_2:+65522619 None:intergenic
CCAATCCTTCTGTGAATACT+TGG 0.375349 7_2:+65523271 None:intergenic
GCTGGAATGGCTGGCCTAGC+TGG 0.382171 7_2:-65521175 Msa1069730:CDS
ATAAAATGGCAAACAGGTAC+TGG 0.382270 7_2:-65526258 Msa1069730:exon
TAAATTTGTGCAGTGCATAC+TGG 0.385862 7_2:-65521219 Msa1069730:intron
ATTTATCCAACTCCTGCTTT+CGG 0.386099 7_2:+65522693 None:intergenic
ATACAAGTGGACAGTGATCC+TGG 0.386745 7_2:+65520906 None:intergenic
TTGATTATGTCGATAATAGA+AGG 0.392622 7_2:+65520691 None:intergenic
AAATTTGTTGGTTAAAGTTA+GGG 0.395326 7_2:-65520627 Msa1069730:three_prime_UTR
AGCTATCACTCAACCCTTCA+AGG 0.403415 7_2:+65522084 None:intergenic
AAGAAGAAGAGTTGTTGTTC+TGG 0.404878 7_2:+65526218 None:intergenic
TCTTAATTTAGATCCGTTAA+GGG 0.404924 7_2:-65521079 Msa1069730:three_prime_UTR
CAATCTTCTCTGAGCGCAAC+TGG 0.405315 7_2:-65521116 Msa1069730:exon
GCTATTAACCGAAAGCAAAC+TGG 0.406414 7_2:-65523461 Msa1069730:CDS
TTGATAGTGAAAGAAACATA+TGG 0.407475 7_2:+65521136 None:intergenic
GATTGAACGTACTTTCTTCT+CGG 0.407525 7_2:+65522106 None:intergenic
ACGGGGTCTAATGAATTTCA+TGG 0.413852 7_2:-65520942 Msa1069730:three_prime_UTR
GGAGCAGTCGAGGTTTCAAC+GGG 0.418534 7_2:-65520960 Msa1069730:three_prime_UTR
CAGGCGTCAGATTGAAGAAC+TGG 0.420504 7_2:-65525817 Msa1069730:CDS
TCCCACTATGTCGCCTTTGA+AGG 0.421157 7_2:-65525617 Msa1069730:CDS
AGTTCGTGATCTTTCTAACT+TGG 0.424259 7_2:-65523351 Msa1069730:CDS
AGATCCGTTAAGGGTTCTCT+TGG 0.426265 7_2:-65521070 Msa1069730:three_prime_UTR
CAATGGTGCTATGCCAGTTA+TGG 0.439580 7_2:-65522632 Msa1069730:CDS
AGAGTTCCAACACGGAGATT+AGG 0.444470 7_2:+65526014 None:intergenic
CTGTCCAAGAGAACCCTTAA+CGG 0.446617 7_2:+65521066 None:intergenic
ACTGCTGGTCTCACCGTTGA+TGG 0.446979 7_2:-65525774 Msa1069730:CDS
GAAGAGTTGTTGTTCTGGAC+GGG 0.448429 7_2:+65526223 None:intergenic
GAGGTAGGTGCTGGAATGGC+TGG 0.451694 7_2:-65521184 Msa1069730:CDS
CCGTTGATTCATACTTGACT+AGG 0.454820 7_2:-65525746 Msa1069730:intron
CCAAGTATTCACAGAAGGAT+TGG 0.455442 7_2:-65523271 Msa1069730:CDS
ACAACTTCTTAGAAGATCTT+GGG 0.467331 7_2:+65523014 None:intergenic
AACACATGAGGGCCGAAAGC+AGG 0.471760 7_2:-65522705 Msa1069730:CDS
ATGTGTGGGAGGGATACTTA+TGG 0.480052 7_2:-65520798 Msa1069730:three_prime_UTR
GGATAAATTGATGCAAGATC+AGG 0.480813 7_2:-65522678 Msa1069730:CDS
CTAGTCAAGTATGAATCAAC+GGG 0.488289 7_2:+65525747 None:intergenic
TCTGAAGTTATAATGTCCTC+TGG 0.490964 7_2:+65523323 None:intergenic
AAATTATCTTTACACAAAAG+AGG 0.492956 7_2:+65520593 None:intergenic
GTTTCCGGTGTTAACACTGC+TGG 0.496991 7_2:-65525789 Msa1069730:CDS
TAATCAATTCTGTAACAGAT+AGG 0.508940 7_2:-65520675 Msa1069730:three_prime_UTR
TCCAGCACCTACCTCTTCAT+CGG 0.509390 7_2:+65521192 None:intergenic
TGAGGGGTTCTCTGCTGCAA+TGG 0.511174 7_2:-65522649 Msa1069730:CDS
TCAACTTTATACTGTTGTGT+GGG 0.512743 7_2:-65520732 Msa1069730:three_prime_UTR
CCATAATGCCAAAGCCAGAA+AGG 0.513490 7_2:-65521043 Msa1069730:three_prime_UTR
TGCAAGATCAGGAAAGTTTG+AGG 0.516872 7_2:-65522667 Msa1069730:CDS
ATGTTTGCGATATTGGTACT+CGG 0.517199 7_2:-65520867 Msa1069730:three_prime_UTR
ACCGATGAAGAGGTAGGTGC+TGG 0.517495 7_2:-65521193 Msa1069730:CDS
GCAAGATCAGGAAAGTTTGA+GGG 0.521056 7_2:-65522666 Msa1069730:CDS
AAAGTACGTTCAATCCTTGA+AGG 0.521138 7_2:-65522098 Msa1069730:CDS
AAGGTGTTTCGAGCAAGATC+AGG 0.521520 7_2:-65525836 Msa1069730:CDS
AACATTCCTAATCTCCGTGT+TGG 0.528436 7_2:-65526020 Msa1069730:CDS
ACACAACAGTATAAAGTTGA+CGG 0.528767 7_2:+65520735 None:intergenic
ACTTGGATACAATCGCAAGC+AGG 0.530434 7_2:+65523288 None:intergenic
ATCTTCTAAGAAGTTGTATG+AGG 0.532393 7_2:-65523008 Msa1069730:CDS
GGTTGAGTGATAGCTCAAAC+AGG 0.532821 7_2:-65522076 Msa1069730:intron
CAGTCTAATGCTTTCATGGA+AGG 0.536029 7_2:-65525855 Msa1069730:CDS
TGGAGCAGTCGAGGTTTCAA+CGG 0.536589 7_2:-65520961 Msa1069730:three_prime_UTR
CCTAGTCAAGTATGAATCAA+CGG 0.542235 7_2:+65525746 None:intergenic
CTCCTTCAAAGGCGACATAG+TGG 0.542755 7_2:+65525615 None:intergenic
TGTTTGCGATATTGGTACTC+GGG 0.544541 7_2:-65520866 Msa1069730:three_prime_UTR
TGAGGGCCGAAAGCAGGAGT+TGG 0.545604 7_2:-65522699 Msa1069730:CDS
TGATAGTGAAAGAAACATAT+GGG 0.549997 7_2:+65521137 None:intergenic
CACAGCACAAAAGTGCATCC+AGG 0.552135 7_2:+65522309 None:intergenic
GTCAACTTTATACTGTTGTG+TGG 0.554232 7_2:-65520733 Msa1069730:three_prime_UTR
TAGTCAAGTCGCTAAGATTG+AGG 0.554636 7_2:-65525575 Msa1069730:CDS
GAAAATAATACAGTCATGTG+TGG 0.557673 7_2:-65520813 Msa1069730:three_prime_UTR
AAGTACGTTCAATCCTTGAA+GGG 0.558521 7_2:-65522097 Msa1069730:CDS
AGAAGAGTTGTTGTTCTGGA+CGG 0.558607 7_2:+65526222 None:intergenic
TAAAATGGCAAACAGGTACT+GGG 0.564084 7_2:-65526257 Msa1069730:exon
AAAATAATACAGTCATGTGT+GGG 0.568102 7_2:-65520812 Msa1069730:three_prime_UTR
CCATCAACAATCTCCTTCAA+AGG 0.568657 7_2:+65525604 None:intergenic
GTGGACAGTGATCCTGGAAA+CGG 0.570690 7_2:+65520912 None:intergenic
GAGTATCTGCTTCACCAGCT+AGG 0.579187 7_2:+65521161 None:intergenic
TAAGATTGAGGATGATCTCA+AGG 0.580294 7_2:-65525563 Msa1069730:intron
CTTACATGAAACAATACAAG+TGG 0.580524 7_2:+65520893 None:intergenic
AAGAGTTGTTGTTCTGGACG+GGG 0.581423 7_2:+65526224 None:intergenic
CGGGGTCTAATGAATTTCAT+GGG 0.582579 7_2:-65520941 Msa1069730:three_prime_UTR
TCCTTCAAAGGCGACATAGT+GGG 0.588007 7_2:+65525616 None:intergenic
ACTTCGAATATTATTATACT+CGG 0.589484 7_2:+65523493 None:intergenic
CTTGGTGAGATCATCGCTGA+GGG 0.591407 7_2:+65525977 None:intergenic
TGTATCCAAGTATTCACAGA+AGG 0.592514 7_2:-65523276 Msa1069730:CDS
AATTTGTTGGTTAAAGTTAG+GGG 0.592727 7_2:-65520626 Msa1069730:three_prime_UTR
ATATATAATTGGAGCAGTCG+AGG 0.593000 7_2:-65520970 Msa1069730:three_prime_UTR
ATAATACAGTCATGTGTGGG+AGG 0.593258 7_2:-65520809 Msa1069730:three_prime_UTR
CTTGGATACAATCGCAAGCA+GGG 0.598061 7_2:+65523289 None:intergenic
TGAAGAGGTAGGTGCTGGAA+TGG 0.604134 7_2:-65521188 Msa1069730:CDS
GAGTAGAGTACCAAGAAAGA+CGG 0.606161 7_2:+65522247 None:intergenic
TTCTAACTTGGTAAAACCAG+AGG 0.607817 7_2:-65523339 Msa1069730:CDS
TAATACAGTCATGTGTGGGA+GGG 0.615638 7_2:-65520808 Msa1069730:three_prime_UTR
AGTTAGATTACTCTGTAGAG+AGG 0.619155 7_2:+65526145 None:intergenic
CAACTTTATACTGTTGTGTG+GGG 0.620678 7_2:-65520731 Msa1069730:three_prime_UTR
CAAGATCAGGAAAGTTTGAG+GGG 0.631451 7_2:-65522665 Msa1069730:CDS
TCTGTAGAGAGGAGTATCGA+AGG 0.643816 7_2:+65526156 None:intergenic
ATCAACGGGAACTCCATCAA+CGG 0.645896 7_2:+65525761 None:intergenic
TGGAAAACCGATGAAGAGGT+AGG 0.652841 7_2:-65521199 Msa1069730:CDS
ATACTGGAAAACCGATGAAG+AGG 0.655781 7_2:-65521203 Msa1069730:CDS
TGAAACATTGACTAGCTATG+TGG 0.657544 7_2:-65523237 Msa1069730:intron
TGTAACACTCTTCAATCGTG+TGG 0.664450 7_2:-65522963 Msa1069730:CDS
TAGAGTACCAAGAAAGACGG+AGG 0.665190 7_2:+65522250 None:intergenic
GTGCTATGCCAGTTATGGAG+AGG 0.670859 7_2:-65522627 Msa1069730:intron
TTAACCGAAAGCAAACTGGA+AGG 0.677828 7_2:-65523457 Msa1069730:intron
CCTTGGTGAGATCATCGCTG+AGG 0.684144 7_2:+65525976 None:intergenic
GAGAATCTAGAGTTCCAACA+CGG 0.689268 7_2:+65526006 None:intergenic
TACAGTCCAGAAACACATGA+GGG 0.696017 7_2:-65522716 Msa1069730:CDS
GAGACCAGCAGTGTTAACAC+CGG 0.714693 7_2:+65525785 None:intergenic
ATACAGTCCAGAAACACATG+AGG 0.715627 7_2:-65522717 Msa1069730:CDS
CCTCAGCGATGATCTCACCA+AGG 0.724666 7_2:-65525976 Msa1069730:intron
AATGGCAAACAGGTACTGGG+TGG 0.739017 7_2:-65526254 Msa1069730:CDS
GAGCAGTCGAGGTTTCAACG+GGG 0.821739 7_2:-65520959 Msa1069730:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAAAATAATAAAACATA+TGG - chr7_2:65522598-65522617 Msa1069730:intron 10.0%
!! ATTAATCTTATATTAATCAA+GGG + chr7_2:65523188-65523207 None:intergenic 10.0%
!! AATTAATCTTATATTAATCA+AGG + chr7_2:65523189-65523208 None:intergenic 10.0%
!!! CATATTTATTATTTTACTTA+TGG + chr7_2:65526143-65526162 None:intergenic 10.0%
!! AACACTAATAGTATAAATAA+GGG + chr7_2:65521484-65521503 None:intergenic 15.0%
!!! ATGTTATTTTATATCATCAA+GGG + chr7_2:65522710-65522729 None:intergenic 15.0%
!!! TATGTTATTTTATATCATCA+AGG + chr7_2:65522711-65522730 None:intergenic 15.0%
!! TTAAAATCCCTATTTAAATA+TGG - chr7_2:65522902-65522921 Msa1069730:intron 15.0%
!! TTAATCTTATATTAATCAAG+GGG + chr7_2:65523187-65523206 None:intergenic 15.0%
!!! CTAATTAGGTTAAATATTTT+AGG - chr7_2:65523871-65523890 Msa1069730:intron 15.0%
!! AATTAAAAGAAATACTTACT+TGG + chr7_2:65524009-65524028 None:intergenic 15.0%
!! AAATAAGAAGTTATAGTTAT+TGG - chr7_2:65525388-65525407 Msa1069730:intron 15.0%
!! AACACTCGTAAAAAATAAAA+TGG - chr7_2:65520637-65520656 Msa1069730:three_prime_UTR 20.0%
!! TAAAAAATAAAATGGCAAAC+AGG - chr7_2:65520645-65520664 Msa1069730:three_prime_UTR 20.0%
!! AAGATCGATGAATTAATTAA+AGG + chr7_2:65520843-65520862 None:intergenic 20.0%
!! CAACACTAATAGTATAAATA+AGG + chr7_2:65521485-65521504 None:intergenic 20.0%
!! ATTTATACTATTAGTGTTGT+TGG - chr7_2:65521486-65521505 Msa1069730:intron 20.0%
!!! TACAAAATTTTGTGAAATAG+TGG - chr7_2:65521579-65521598 Msa1069730:intron 20.0%
!! ATTCATATACAAAATACCAA+CGG - chr7_2:65521837-65521856 Msa1069730:intron 20.0%
!!! TTTTCTTAGATAGCATATTT+TGG - chr7_2:65521901-65521920 Msa1069730:intron 20.0%
!! CTTCAACTCAAATATAAATA+AGG + chr7_2:65521986-65522005 None:intergenic 20.0%
!! ACATATACCACATATATATA+GGG + chr7_2:65522012-65522031 None:intergenic 20.0%
!! AACATATACCACATATATAT+AGG + chr7_2:65522013-65522032 None:intergenic 20.0%
!! TATATATATGTGGTATATGT+TGG - chr7_2:65522012-65522031 Msa1069730:intron 20.0%
!!! TCTTCAACTTTAAAAAGTTT+TGG - chr7_2:65522408-65522427 Msa1069730:intron 20.0%
!!! AATAAAACATATGGATTATC+TGG - chr7_2:65522607-65522626 Msa1069730:intron 20.0%
!! TAACATACTTTATTGATCTA+AGG - chr7_2:65522724-65522743 Msa1069730:CDS 20.0%
!! AACATACTTTATTGATCTAA+GGG - chr7_2:65522725-65522744 Msa1069730:CDS 20.0%
!! TTAGAGTCCATATTTAAATA+GGG + chr7_2:65522912-65522931 None:intergenic 20.0%
!!! TTTAGAGTCCATATTTAAAT+AGG + chr7_2:65522913-65522932 None:intergenic 20.0%
!! TTTAAAGGTAATTATATGAC+AGG + chr7_2:65522985-65523004 None:intergenic 20.0%
!! TGTCTTATAGTATAATAGTA+TGG - chr7_2:65523240-65523259 Msa1069730:CDS 20.0%
!! ATGTTCTTTGTAATATTTCT+CGG + chr7_2:65523310-65523329 None:intergenic 20.0%
!! ACTTCGAATATTATTATACT+CGG + chr7_2:65523419-65523438 None:intergenic 20.0%
!!! TGTCTTCAATTTGTTAATAT+TGG - chr7_2:65524041-65524060 Msa1069730:intron 20.0%
!! TCGAATATCAATTCATAATT+TGG - chr7_2:65524116-65524135 Msa1069730:intron 20.0%
!! TTCAGTCTTAATATATTCTT+GGG + chr7_2:65524351-65524370 None:intergenic 20.0%
!! ATTCAGTCTTAATATATTCT+TGG + chr7_2:65524352-65524371 None:intergenic 20.0%
!!! TTTTACTTTATACTTTCTGA+AGG - chr7_2:65524568-65524587 Msa1069730:intron 20.0%
!! TAAAAAAAAAATGTTGTTCG+GGG + chr7_2:65524720-65524739 None:intergenic 20.0%
!! GTAAAAAAAAAATGTTGTTC+GGG + chr7_2:65524721-65524740 None:intergenic 20.0%
!! GGTAAAAAAAAAATGTTGTT+CGG + chr7_2:65524722-65524741 None:intergenic 20.0%
!!! TTTTAAAGAATTTCATGAAG+AGG + chr7_2:65525117-65525136 None:intergenic 20.0%
!! TCTTCATGAAATTCTTTAAA+AGG - chr7_2:65525116-65525135 Msa1069730:intron 20.0%
!! ATGCTATTCAATAAATTTGT+TGG - chr7_2:65526270-65526289 Msa1069730:exon 20.0%
!!! TAAATTTGTTGGTTAAAGTT+AGG - chr7_2:65526281-65526300 Msa1069730:five_prime_UTR 20.0%
!!! AAATTTGTTGGTTAAAGTTA+GGG - chr7_2:65526282-65526301 Msa1069730:five_prime_UTR 20.0%
! GTTAAATAGATGATTAGTGA+GGG + chr7_2:65520790-65520809 None:intergenic 25.0%
! AGTTAAATAGATGATTAGTG+AGG + chr7_2:65520791-65520810 None:intergenic 25.0%
!! TATTGGATCTAGATTTGTTT+GGG - chr7_2:65521256-65521275 Msa1069730:intron 25.0%
!! GATCTATATGTTTGATTTCA+TGG - chr7_2:65521408-65521427 Msa1069730:intron 25.0%
! TTCATATACAAAATACCAAC+GGG - chr7_2:65521838-65521857 Msa1069730:intron 25.0%
! TAAATTTATGATATGGTCTG+CGG - chr7_2:65521865-65521884 Msa1069730:intron 25.0%
! TAGAAAACCTTTAAACAAAC+AGG + chr7_2:65521928-65521947 None:intergenic 25.0%
! TAAGAAACAGACAATCAATT+GGG + chr7_2:65521955-65521974 None:intergenic 25.0%
! TTAAGAAACAGACAATCAAT+TGG + chr7_2:65521956-65521975 None:intergenic 25.0%
! CATATACCACATATATATAG+GGG + chr7_2:65522011-65522030 None:intergenic 25.0%
! AACCAAAAACAAATATTAGC+TGG + chr7_2:65522101-65522120 None:intergenic 25.0%
! AGAGAATAATGTAGAAGATA+TGG - chr7_2:65522161-65522180 Msa1069730:intron 25.0%
! ATAAAACGTTTAGAAACAGA+TGG - chr7_2:65522567-65522586 Msa1069730:intron 25.0%
! TAAAACGTTTAGAAACAGAT+GGG - chr7_2:65522568-65522587 Msa1069730:intron 25.0%
!! TATGGATTATCTGGATTTAA+AGG - chr7_2:65522616-65522635 Msa1069730:intron 25.0%
! ACATACTTTATTGATCTAAG+GGG - chr7_2:65522726-65522745 Msa1069730:CDS 25.0%
! AATAAACCCAAAGTTTATTC+CGG + chr7_2:65522873-65522892 None:intergenic 25.0%
!! GAATAAACTTTGGGTTTATT+GGG - chr7_2:65522873-65522892 Msa1069730:intron 25.0%
!!! GGCACATCAATTTTTTTTAA+AGG + chr7_2:65523000-65523019 None:intergenic 25.0%
! TCTACAATTATTTGCTTCAT+CGG + chr7_2:65523076-65523095 None:intergenic 25.0%
! TATTAATCAAGGGGAAAAAA+AGG + chr7_2:65523178-65523197 None:intergenic 25.0%
! GAATGTTTAGATGAATTACA+GGG + chr7_2:65523775-65523794 None:intergenic 25.0%
! AAGGTATGAACAAACAATAT+TGG + chr7_2:65523797-65523816 None:intergenic 25.0%
!! TATTGGTAATATCTGTATAG+TGG - chr7_2:65524058-65524077 Msa1069730:intron 25.0%
! AAAAAAAAAATGTTGTTCGG+GGG + chr7_2:65524719-65524738 None:intergenic 25.0%
!! TTTTTACCACTGATCATTAT+TGG - chr7_2:65524734-65524753 Msa1069730:intron 25.0%
!! TTTTACCACTGATCATTATT+GGG - chr7_2:65524735-65524754 Msa1069730:intron 25.0%
! GTCTCATCATTTAAATCATA+TGG - chr7_2:65524881-65524900 Msa1069730:intron 25.0%
!! AGTTGAAGTACTATCAAATT+TGG + chr7_2:65525079-65525098 None:intergenic 25.0%
!! AAGTTATAGTTATTGGTTAG+TGG - chr7_2:65525395-65525414 Msa1069730:intron 25.0%
!! TTTTGGTAAAGCATAATACA+GGG + chr7_2:65525557-65525576 None:intergenic 25.0%
!! TGATAGTGAAAGAAACATAT+GGG + chr7_2:65525775-65525794 None:intergenic 25.0%
!!! TTGATAGTGAAAGAAACATA+TGG + chr7_2:65525776-65525795 None:intergenic 25.0%
! CGGATCTAAATTAAGAAATA+GGG + chr7_2:65525826-65525845 None:intergenic 25.0%
! ACGGATCTAAATTAAGAAAT+AGG + chr7_2:65525827-65525846 None:intergenic 25.0%
! TTCTTAATTTAGATCCGTTA+AGG - chr7_2:65525829-65525848 Msa1069730:CDS 25.0%
! TCTTAATTTAGATCCGTTAA+GGG - chr7_2:65525830-65525849 Msa1069730:CDS 25.0%
! AAAATAATACAGTCATGTGT+GGG - chr7_2:65526097-65526116 Msa1069730:intron 25.0%
! TTGATTATGTCGATAATAGA+AGG + chr7_2:65526221-65526240 None:intergenic 25.0%
! TAATCAATTCTGTAACAGAT+AGG - chr7_2:65526234-65526253 Msa1069730:CDS 25.0%
!!! AATTTGTTGGTTAAAGTTAG+GGG - chr7_2:65526283-65526302 Msa1069730:five_prime_UTR 25.0%
! TAGAGATATTTTGCTGCAAT+TGG + chr7_2:65520727-65520746 None:intergenic 30.0%
GAAAATCGGAAAATTAACCT+TGG + chr7_2:65520953-65520972 None:intergenic 30.0%
ACAAACTATCAACAGATCAA+AGG + chr7_2:65521209-65521228 None:intergenic 30.0%
! GTATTGGATCTAGATTTGTT+TGG - chr7_2:65521255-65521274 Msa1069730:intron 30.0%
! TTTGATTTCATGGATGTGAT+GGG - chr7_2:65521418-65521437 Msa1069730:intron 30.0%
! TTTAAGTCTCTGCATTCTTT+TGG - chr7_2:65521703-65521722 Msa1069730:intron 30.0%
TTGCATCAGCAGATATAAAT+TGG + chr7_2:65521752-65521771 None:intergenic 30.0%
!! GATCCAAAAAGTTTAGTTCT+GGG - chr7_2:65521807-65521826 Msa1069730:intron 30.0%
TCATATACAAAATACCAACG+GGG - chr7_2:65521839-65521858 Msa1069730:intron 30.0%
! TTTTGGTCCTGTTTGTTTAA+AGG - chr7_2:65521918-65521937 Msa1069730:intron 30.0%
CAGCACAAAGTAAAATTCAT+AGG + chr7_2:65522226-65522245 None:intergenic 30.0%
!! GAATTTTACTTTGTGCTGTT+TGG - chr7_2:65522228-65522247 Msa1069730:intron 30.0%
! TTTAGTTCCTGAAGTTACAT+AGG - chr7_2:65522306-65522325 Msa1069730:CDS 30.0%
GTAAATTCCTATGTAACTTC+AGG + chr7_2:65522316-65522335 None:intergenic 30.0%
!! TGAAAGGGTGCTTATAAAAA+GGG + chr7_2:65522467-65522486 None:intergenic 30.0%
!!! AAGGGGTGTTTTTAAATGAA+CGG - chr7_2:65522496-65522515 Msa1069730:intron 30.0%
CATACTTTATTGATCTAAGG+GGG - chr7_2:65522727-65522746 Msa1069730:CDS 30.0%
ATACTTTATTGATCTAAGGG+GGG - chr7_2:65522728-65522747 Msa1069730:CDS 30.0%
! GGAATAAACTTTGGGTTTAT+TGG - chr7_2:65522872-65522891 Msa1069730:intron 30.0%
CTAAAAATACTATTTGAGCC+CGG - chr7_2:65522928-65522947 Msa1069730:CDS 30.0%
TTATTTGCAGTATAACCAAG+TGG + chr7_2:65523042-65523061 None:intergenic 30.0%
! TTATTTGCTTCATCGGATTT+TGG + chr7_2:65523069-65523088 None:intergenic 30.0%
! GTGGATTGATATTTCTACTT+GGG - chr7_2:65523357-65523376 Msa1069730:CDS 30.0%
ATATGAATACTACTTCCTTG+TGG - chr7_2:65523720-65523739 Msa1069730:intron 30.0%
TTCCTTGTGGTTATTGTAAA+TGG - chr7_2:65523733-65523752 Msa1069730:intron 30.0%
TCCTTGTGGTTATTGTAAAT+GGG - chr7_2:65523734-65523753 Msa1069730:intron 30.0%
GGAATGTTTAGATGAATTAC+AGG + chr7_2:65523776-65523795 None:intergenic 30.0%
GCAAACTTGGAATTATTCAA+AGG + chr7_2:65523816-65523835 None:intergenic 30.0%
ATGAAAAGCAAAAGCAAACT+TGG + chr7_2:65523829-65523848 None:intergenic 30.0%
TCCTTGTTCTACTTCTAATT+AGG - chr7_2:65523857-65523876 Msa1069730:intron 30.0%
ACCTAATTAGAAGTAGAACA+AGG + chr7_2:65523861-65523880 None:intergenic 30.0%
ACAACTTCTTAGAAGATCTT+GGG + chr7_2:65523898-65523917 None:intergenic 30.0%
TACAACTTCTTAGAAGATCT+TGG + chr7_2:65523899-65523918 None:intergenic 30.0%
! ATCTTCTAAGAAGTTGTATG+AGG - chr7_2:65523901-65523920 Msa1069730:intron 30.0%
! TCAATTCATAATTTGGTGAC+TGG - chr7_2:65524123-65524142 Msa1069730:intron 30.0%
AGATAGCATTAGAAAAACCA+AGG - chr7_2:65524376-65524395 Msa1069730:intron 30.0%
CTTAATTCCATCAGTTAATC+AGG + chr7_2:65524934-65524953 None:intergenic 30.0%
!!! CTTGTTTTTGCTGGATATAA+AGG - chr7_2:65524994-65525013 Msa1069730:intron 30.0%
CTAGAGTAAGTTCTGTATAT+TGG + chr7_2:65525367-65525386 None:intergenic 30.0%
!! TGGTTAGTGGATAGTTATTT+TGG - chr7_2:65525408-65525427 Msa1069730:intron 30.0%
TTAAAACGTTTCTACTCTCT+TGG - chr7_2:65525435-65525454 Msa1069730:intron 30.0%
TTTGGTAAAGCATAATACAG+GGG + chr7_2:65525556-65525575 None:intergenic 30.0%
!! GTTTTGGTAAAGCATAATAC+AGG + chr7_2:65525558-65525577 None:intergenic 30.0%
GTTGATTGACTATTCTTACA+TGG - chr7_2:65525650-65525669 Msa1069730:intron 30.0%
CAAAATCTTCAAATCCTTTC+TGG + chr7_2:65525883-65525902 None:intergenic 30.0%
CTTACATGAAACAATACAAG+TGG + chr7_2:65526019-65526038 None:intergenic 30.0%
TAAGTTCATGTTTGCGATAT+TGG - chr7_2:65526035-65526054 Msa1069730:intron 30.0%
GAAAATAATACAGTCATGTG+TGG - chr7_2:65526096-65526115 Msa1069730:intron 30.0%
ACACAACAGTATAAAGTTGA+CGG + chr7_2:65526177-65526196 None:intergenic 30.0%
TCAACTTTATACTGTTGTGT+GGG - chr7_2:65526177-65526196 Msa1069730:CDS 30.0%
ATAAAATGGCAAACAGGTAC+TGG - chr7_2:65520651-65520670 Msa1069730:three_prime_UTR 35.0%
TAAAATGGCAAACAGGTACT+GGG - chr7_2:65520652-65520671 Msa1069730:three_prime_UTR 35.0%
! AAGAAGAAGAGTTGTTGTTC+TGG + chr7_2:65520694-65520713 None:intergenic 35.0%
ACAACTCTTCTTCTTCGATT+TGG - chr7_2:65520699-65520718 Msa1069730:three_prime_UTR 35.0%
AGTTAGATTACTCTGTAGAG+AGG + chr7_2:65520767-65520786 None:intergenic 35.0%
ATTAGAGTAATGAAGCGTGA+TGG + chr7_2:65520816-65520835 None:intergenic 35.0%
GAGAGATGAAAGAGGAAAAT+CGG + chr7_2:65520967-65520986 None:intergenic 35.0%
GTGAAATTGAGAGATGAAAG+AGG + chr7_2:65520975-65520994 None:intergenic 35.0%
TATGCAGTCTAATGCTTTCA+TGG - chr7_2:65521050-65521069 Msa1069730:three_prime_UTR 35.0%
CTAGTCAAGTATGAATCAAC+GGG + chr7_2:65521165-65521184 None:intergenic 35.0%
CCTAGTCAAGTATGAATCAA+CGG + chr7_2:65521166-65521185 None:intergenic 35.0%
!!! GCTGATTCTGGTTTTTGTAT+TGG - chr7_2:65521239-65521258 Msa1069730:intron 35.0%
TAAGATTGAGGATGATCTCA+AGG - chr7_2:65521346-65521365 Msa1069730:intron 35.0%
! GTTTGATTTCATGGATGTGA+TGG - chr7_2:65521417-65521436 Msa1069730:intron 35.0%
ATCTCACTAGTTGTCAATGA+TGG + chr7_2:65521633-65521652 None:intergenic 35.0%
TAACTTTCTTGCCTGTTGTA+TGG - chr7_2:65521672-65521691 Msa1069730:intron 35.0%
! GCAAATTTTGTAATGAGCGA+CGG - chr7_2:65521785-65521804 Msa1069730:intron 35.0%
! GGATCCAAAAAGTTTAGTTC+TGG - chr7_2:65521806-65521825 Msa1069730:intron 35.0%
! TGTCCCAGAACTAAACTTTT+TGG + chr7_2:65521813-65521832 None:intergenic 35.0%
! GGGGCACTAAATTTATGATA+TGG - chr7_2:65521858-65521877 Msa1069730:intron 35.0%
GAAGTTCCCCTATATATATG+TGG - chr7_2:65522002-65522021 Msa1069730:intron 35.0%
AAATATTAGCTGGCCACATT+AGG + chr7_2:65522091-65522110 None:intergenic 35.0%
!! GGCCAGCTAATATTTGTTTT+TGG - chr7_2:65522096-65522115 Msa1069730:CDS 35.0%
ACAAATCATCCAAGACATTG+GGG + chr7_2:65522203-65522222 None:intergenic 35.0%
GACAAATCATCCAAGACATT+GGG + chr7_2:65522204-65522223 None:intergenic 35.0%
TCATTCATGGCTAAGATAGA+TGG + chr7_2:65522341-65522360 None:intergenic 35.0%
TTAGCCATGAATGAGAAACA+CGG - chr7_2:65522347-65522366 Msa1069730:intron 35.0%
!! GTGAAAGGGTGCTTATAAAA+AGG + chr7_2:65522468-65522487 None:intergenic 35.0%
!! GGTGTTTTTAAATGAACGGA+GGG - chr7_2:65522500-65522519 Msa1069730:intron 35.0%
AAGTAACAGGAAGACTATCT+TGG - chr7_2:65522530-65522549 Msa1069730:intron 35.0%
AATGCATGATTTCGCTAGAA+AGG - chr7_2:65522652-65522671 Msa1069730:CDS 35.0%
!!! CATTTTTTTCCCAACATGAG+AGG + chr7_2:65522761-65522780 None:intergenic 35.0%
! TTTAGAGCTAGGGGATTAAA+TGG + chr7_2:65522808-65522827 None:intergenic 35.0%
!!! TTTTGACAGCTTTAGAGCTA+GGG + chr7_2:65522818-65522837 None:intergenic 35.0%
TGACCCTAAAATAAATGGGT+CGG + chr7_2:65522849-65522868 None:intergenic 35.0%
AAGGTAATTATATGACAGGC+TGG + chr7_2:65522981-65523000 None:intergenic 35.0%
ATTGATGTGCCTTGAATTGT+CGG - chr7_2:65523009-65523028 Msa1069730:CDS 35.0%
TTCTGCATATGTAACTCTGA+AGG - chr7_2:65523108-65523127 Msa1069730:intron 35.0%
!! CTGAAGGTATTTCACAATGA+TGG - chr7_2:65523124-65523143 Msa1069730:intron 35.0%
! ATTTCACAATGATGGAGTGA+TGG - chr7_2:65523132-65523151 Msa1069730:intron 35.0%
TGCAAAATAAGTAGGGACTA+TGG + chr7_2:65523333-65523352 None:intergenic 35.0%
CACGCAATGCAAAATAAGTA+GGG + chr7_2:65523340-65523359 None:intergenic 35.0%
! CGTGGATTGATATTTCTACT+TGG - chr7_2:65523356-65523375 Msa1069730:CDS 35.0%
GAAAATTTGTCTTTCATGCC+AGG - chr7_2:65523384-65523403 Msa1069730:intron 35.0%
CTAAGCTGAAATAGTAAAGC+AGG + chr7_2:65523537-65523556 None:intergenic 35.0%
AGTTCGTGATCTTTCTAACT+TGG - chr7_2:65523558-65523577 Msa1069730:intron 35.0%
TTCTAACTTGGTAAAACCAG+AGG - chr7_2:65523570-65523589 Msa1069730:intron 35.0%
! TCTGAAGTTATAATGTCCTC+TGG + chr7_2:65523589-65523608 None:intergenic 35.0%
TGTATCCAAGTATTCACAGA+AGG - chr7_2:65523633-65523652 Msa1069730:intron 35.0%
! TGAAACATTGACTAGCTATG+TGG - chr7_2:65523672-65523691 Msa1069730:intron 35.0%
ACCCATTTACAATAACCACA+AGG + chr7_2:65523738-65523757 None:intergenic 35.0%
ATTTATCCAACTCCTGCTTT+CGG + chr7_2:65524219-65524238 None:intergenic 35.0%
GGATAAATTGATGCAAGATC+AGG - chr7_2:65524231-65524250 Msa1069730:intron 35.0%
TAGCATTAGAAAAACCAAGG+TGG - chr7_2:65524379-65524398 Msa1069730:intron 35.0%
TAGAAAAACCAAGGTGGTTA+TGG - chr7_2:65524385-65524404 Msa1069730:intron 35.0%
AGAAAAACCAAGGTGGTTAT+GGG - chr7_2:65524386-65524405 Msa1069730:intron 35.0%
!! TCTGAAAGCATTCTGAGATA+TGG - chr7_2:65524632-65524651 Msa1069730:intron 35.0%
ACTCTTCTAGACTAGAAGTT+CGG - chr7_2:65524681-65524700 Msa1069730:intron 35.0%
GATTGAACGTACTTTCTTCT+CGG + chr7_2:65524806-65524825 None:intergenic 35.0%
AAAGTACGTTCAATCCTTGA+AGG - chr7_2:65524811-65524830 Msa1069730:intron 35.0%
AAGTACGTTCAATCCTTGAA+GGG - chr7_2:65524812-65524831 Msa1069730:intron 35.0%
CTCAAAGGAAAAGATAACGT+GGG + chr7_2:65524959-65524978 None:intergenic 35.0%
! CACGTTATCTTTTCCTTTGA+GGG - chr7_2:65524958-65524977 Msa1069730:intron 35.0%
! ACGTTATCTTTTCCTTTGAG+GGG - chr7_2:65524959-65524978 Msa1069730:intron 35.0%
GTCAAAATGCGAATCATGTT+TGG + chr7_2:65525150-65525169 None:intergenic 35.0%
!! TGATTCGCATTTTGACAGTT+AGG - chr7_2:65525154-65525173 Msa1069730:intron 35.0%
CAGTTAGGAATGCACATATT+TGG - chr7_2:65525169-65525188 Msa1069730:intron 35.0%
GAGATGCTAGAAAAACAGTT+AGG - chr7_2:65525481-65525500 Msa1069730:intron 35.0%
! AACATGAGAGAAGCAAGTTT+TGG + chr7_2:65525574-65525593 None:intergenic 35.0%
GCACTGCACAAATTTATTGA+GGG + chr7_2:65525686-65525705 None:intergenic 35.0%
TGCACTGCACAAATTTATTG+AGG + chr7_2:65525687-65525706 None:intergenic 35.0%
TAAATTTGTGCAGTGCATAC+TGG - chr7_2:65525690-65525709 Msa1069730:intron 35.0%
ATATATAATTGGAGCAGTCG+AGG - chr7_2:65525939-65525958 Msa1069730:intron 35.0%
ATGTTTGCGATATTGGTACT+CGG - chr7_2:65526042-65526061 Msa1069730:intron 35.0%
GTCAACTTTATACTGTTGTG+TGG - chr7_2:65526176-65526195 Msa1069730:CDS 35.0%
CAACTTTATACTGTTGTGTG+GGG - chr7_2:65526178-65526197 Msa1069730:CDS 35.0%
! AGAAGAGTTGTTGTTCTGGA+CGG + chr7_2:65520690-65520709 None:intergenic 40.0%
AACATTCCTAATCTCCGTGT+TGG - chr7_2:65520889-65520908 Msa1069730:three_prime_UTR 40.0%
! GAGAATCTAGAGTTCCAACA+CGG + chr7_2:65520906-65520925 None:intergenic 40.0%
CAGTCTAATGCTTTCATGGA+AGG - chr7_2:65521054-65521073 Msa1069730:three_prime_UTR 40.0%
!! CCGTTGATTCATACTTGACT+AGG - chr7_2:65521163-65521182 Msa1069730:CDS 40.0%
!!! GTTTTTGTTTGCGCTGATTC+TGG - chr7_2:65521227-65521246 Msa1069730:intron 40.0%
CCATCAACAATCTCCTTCAA+AGG + chr7_2:65521308-65521327 None:intergenic 40.0%
! CCTTTGAAGGAGATTGTTGA+TGG - chr7_2:65521305-65521324 Msa1069730:intron 40.0%
TAGTCAAGTCGCTAAGATTG+AGG - chr7_2:65521334-65521353 Msa1069730:intron 40.0%
! GCTATAGTGCTATTGCATAG+CGG - chr7_2:65521515-65521534 Msa1069730:intron 40.0%
! TGATGGATCGCAGAAAATAG+CGG + chr7_2:65521616-65521635 None:intergenic 40.0%
AAACCAGTTAGCCATACAAC+AGG + chr7_2:65521686-65521705 None:intergenic 40.0%
TCATAAATTTAGTGCCCCGT+TGG + chr7_2:65521856-65521875 None:intergenic 40.0%
!!! TGTTTTTGGTTAGAAGACCC+CGG - chr7_2:65522110-65522129 Msa1069730:CDS 40.0%
!!! TCTTGTTTTCCCCAATGTCT+TGG - chr7_2:65522191-65522210 Msa1069730:intron 40.0%
GGACAAATCATCCAAGACAT+TGG + chr7_2:65522205-65522224 None:intergenic 40.0%
TTTGCCGTGTTTCTCATTCA+TGG + chr7_2:65522354-65522373 None:intergenic 40.0%
! AGGGTGCTTATAAAAAGGGA+CGG + chr7_2:65522463-65522482 None:intergenic 40.0%
!! GGGTGTTTTTAAATGAACGG+AGG - chr7_2:65522499-65522518 Msa1069730:intron 40.0%
AACGTTTAGAAACAGATGGG+TGG - chr7_2:65522571-65522590 Msa1069730:intron 40.0%
AGCTAGGGGATTAAATGGTT+GGG + chr7_2:65522803-65522822 None:intergenic 40.0%
!! TTTGACAGCTTTAGAGCTAG+GGG + chr7_2:65522817-65522836 None:intergenic 40.0%
!!! GTTTTGACAGCTTTAGAGCT+AGG + chr7_2:65522819-65522838 None:intergenic 40.0%
!!! CACCCGACCCATTTATTTTA+GGG - chr7_2:65522843-65522862 Msa1069730:intron 40.0%
GACCCTAAAATAAATGGGTC+GGG + chr7_2:65522848-65522867 None:intergenic 40.0%
CGGCTGACCCTAAAATAAAT+GGG + chr7_2:65522853-65522872 None:intergenic 40.0%
!!! CCATTTATTTTAGGGTCAGC+CGG - chr7_2:65522851-65522870 Msa1069730:intron 40.0%
CCACGCAATGCAAAATAAGT+AGG + chr7_2:65523341-65523360 None:intergenic 40.0%
!!! CCTACTTATTTTGCATTGCG+TGG - chr7_2:65523338-65523357 Msa1069730:CDS 40.0%
GCTATTAACCGAAAGCAAAC+TGG - chr7_2:65523448-65523467 Msa1069730:intron 40.0%
TTAACCGAAAGCAAACTGGA+AGG - chr7_2:65523452-65523471 Msa1069730:intron 40.0%
CCAATCCTTCTGTGAATACT+TGG + chr7_2:65523641-65523660 None:intergenic 40.0%
CCAAGTATTCACAGAAGGAT+TGG - chr7_2:65523638-65523657 Msa1069730:intron 40.0%
TGTAACACTCTTCAATCGTG+TGG - chr7_2:65523946-65523965 Msa1069730:intron 40.0%
AGAACTAGTGCACGTGAAAA+AGG - chr7_2:65523980-65523999 Msa1069730:intron 40.0%
GAACTAGTGCACGTGAAAAA+GGG - chr7_2:65523981-65524000 Msa1069730:intron 40.0%
ATACAGTCCAGAAACACATG+AGG - chr7_2:65524192-65524211 Msa1069730:intron 40.0%
TACAGTCCAGAAACACATGA+GGG - chr7_2:65524193-65524212 Msa1069730:intron 40.0%
TGCAAGATCAGGAAAGTTTG+AGG - chr7_2:65524242-65524261 Msa1069730:intron 40.0%
GCAAGATCAGGAAAGTTTGA+GGG - chr7_2:65524243-65524262 Msa1069730:intron 40.0%
CAAGATCAGGAAAGTTTGAG+GGG - chr7_2:65524244-65524263 Msa1069730:intron 40.0%
GCATAATACCTCTCCATAAC+TGG + chr7_2:65524293-65524312 None:intergenic 40.0%
TACATTTCCCATAACCACCT+TGG + chr7_2:65524396-65524415 None:intergenic 40.0%
CGTGTTATCCTAAAATGCCA+TGG - chr7_2:65524528-65524547 Msa1069730:intron 40.0%
! GAGAAGAACCATGGCATTTT+AGG + chr7_2:65524539-65524558 None:intergenic 40.0%
! GAGTAGAGTACCAAGAAAGA+CGG + chr7_2:65524665-65524684 None:intergenic 40.0%
AAAAAATGTTGTTCGGGGGA+AGG + chr7_2:65524715-65524734 None:intergenic 40.0%
GAAGACCCAATAATGATCAG+TGG + chr7_2:65524743-65524762 None:intergenic 40.0%
! TTCTTCTCGGCTTTTACAGA+TGG + chr7_2:65524793-65524812 None:intergenic 40.0%
TACCAAGCCTGATTAACTGA+TGG - chr7_2:65524924-65524943 Msa1069730:intron 40.0%
TTCCATCAGTTAATCAGGCT+TGG + chr7_2:65524929-65524948 None:intergenic 40.0%
CCTCAAAGGAAAAGATAACG+TGG + chr7_2:65524960-65524979 None:intergenic 40.0%
! CCACGTTATCTTTTCCTTTG+AGG - chr7_2:65524957-65524976 Msa1069730:intron 40.0%
!! CGTTATCTTTTCCTTTGAGG+GGG - chr7_2:65524960-65524979 Msa1069730:intron 40.0%
!!! GGTTGTTCACTTGTTTTTGC+TGG - chr7_2:65524985-65525004 Msa1069730:intron 40.0%
CAAACCACAAAACACTGTAC+TGG - chr7_2:65525327-65525346 Msa1069730:intron 40.0%
GTAAAGCATAATACAGGGGA+TGG + chr7_2:65525552-65525571 None:intergenic 40.0%
ATACTGGAAAACCGATGAAG+AGG - chr7_2:65525706-65525725 Msa1069730:intron 40.0%
!! CTTCAAATCCTTTCTGGCTT+TGG + chr7_2:65525877-65525896 None:intergenic 40.0%
ACGGGGTCTAATGAATTTCA+TGG - chr7_2:65525967-65525986 Msa1069730:intron 40.0%
CGGGGTCTAATGAATTTCAT+GGG - chr7_2:65525968-65525987 Msa1069730:intron 40.0%
TGTTTGCGATATTGGTACTC+GGG - chr7_2:65526043-65526062 Msa1069730:intron 40.0%
ATAATACAGTCATGTGTGGG+AGG - chr7_2:65526100-65526119 Msa1069730:intron 40.0%
TAATACAGTCATGTGTGGGA+GGG - chr7_2:65526101-65526120 Msa1069730:intron 40.0%
! AAGAGTTGTTGTTCTGGACG+GGG + chr7_2:65520688-65520707 None:intergenic 45.0%
! GAAGAGTTGTTGTTCTGGAC+GGG + chr7_2:65520689-65520708 None:intergenic 45.0%
!! TCTGTAGAGAGGAGTATCGA+AGG + chr7_2:65520756-65520775 None:intergenic 45.0%
AGAGTTCCAACACGGAGATT+AGG + chr7_2:65520898-65520917 None:intergenic 45.0%
! AAGGTGTTTCGAGCAAGATC+AGG - chr7_2:65521073-65521092 Msa1069730:three_prime_UTR 45.0%
ATCAACGGGAACTCCATCAA+CGG + chr7_2:65521151-65521170 None:intergenic 45.0%
TCCTTCAAAGGCGACATAGT+GGG + chr7_2:65521296-65521315 None:intergenic 45.0%
TTGCCTGTTGTATGGCTAAC+TGG - chr7_2:65521680-65521699 Msa1069730:intron 45.0%
GAGTGCAAATGCTCCTAATG+TGG - chr7_2:65522075-65522094 Msa1069730:intron 45.0%
CAACAACTTCTACCCCATCT+TGG + chr7_2:65522141-65522160 None:intergenic 45.0%
TTGGTCCTCATCTGCAATGT+TGG - chr7_2:65522247-65522266 Msa1069730:intron 45.0%
TGAAGCCAACATTGCAGATG+AGG + chr7_2:65522255-65522274 None:intergenic 45.0%
GTGCTTATAAAAAGGGACGG+AGG + chr7_2:65522460-65522479 None:intergenic 45.0%
ACCCTTTCACACTCACTGAA+GGG - chr7_2:65522478-65522497 Msa1069730:intron 45.0%
!! GGAGGGAGTACTTAAGTAAC+AGG - chr7_2:65522517-65522536 Msa1069730:intron 45.0%
TTATTGATCTAAGGGGGGAG+TGG - chr7_2:65522733-65522752 Msa1069730:CDS 45.0%
GAGCTAGGGGATTAAATGGT+TGG + chr7_2:65522804-65522823 None:intergenic 45.0%
CCTAAAATAAATGGGTCGGG+TGG + chr7_2:65522845-65522864 None:intergenic 45.0%
!! CCACCCGACCCATTTATTTT+AGG - chr7_2:65522842-65522861 Msa1069730:intron 45.0%
CCGGCTGACCCTAAAATAAA+TGG + chr7_2:65522854-65522873 None:intergenic 45.0%
GGTCAGCCGGAATAAACTTT+GGG - chr7_2:65522864-65522883 Msa1069730:intron 45.0%
TATACTCGGAAACACGAACC+TGG + chr7_2:65523405-65523424 None:intergenic 45.0%
CTTGGATACAATCGCAAGCA+GGG + chr7_2:65523623-65523642 None:intergenic 45.0%
ACTTGGATACAATCGCAAGC+AGG + chr7_2:65523624-65523643 None:intergenic 45.0%
!! CAATGGTGCTATGCCAGTTA+TGG - chr7_2:65524277-65524296 Msa1069730:intron 45.0%
!! CTGTTTTTCACTAGCCTCTC+AGG - chr7_2:65524466-65524485 Msa1069730:intron 45.0%
TCACTCCATAATGTCAGCCT+CGG + chr7_2:65524492-65524511 None:intergenic 45.0%
!! TTCTGAAGGTTTTCAGCTCC+TGG - chr7_2:65524582-65524601 Msa1069730:intron 45.0%
! TAGAGTACCAAGAAAGACGG+AGG + chr7_2:65524662-65524681 None:intergenic 45.0%
!! TTGGGTCTTCTGTTGATTCC+AGG - chr7_2:65524753-65524772 Msa1069730:intron 45.0%
AGCTATCACTCAACCCTTCA+AGG + chr7_2:65524828-65524847 None:intergenic 45.0%
GGTTGAGTGATAGCTCAAAC+AGG - chr7_2:65524833-65524852 Msa1069730:intron 45.0%
!! TATCTTTTCCTTTGAGGGGG+AGG - chr7_2:65524963-65524982 Msa1069730:intron 45.0%
!! ATCTTTTCCTTTGAGGGGGA+GGG - chr7_2:65524964-65524983 Msa1069730:intron 45.0%
! GAGACCAGTACAGTGTTTTG+TGG + chr7_2:65525334-65525353 None:intergenic 45.0%
TGGAAAACCGATGAAGAGGT+AGG - chr7_2:65525710-65525729 Msa1069730:intron 45.0%
AGATCCGTTAAGGGTTCTCT+TGG - chr7_2:65525839-65525858 Msa1069730:CDS 45.0%
CTGTCCAAGAGAACCCTTAA+CGG + chr7_2:65525846-65525865 None:intergenic 45.0%
!! CCTTTCTGGCTTTGGCATTA+TGG + chr7_2:65525869-65525888 None:intergenic 45.0%
CCATAATGCCAAAGCCAGAA+AGG - chr7_2:65525866-65525885 Msa1069730:intron 45.0%
ATACAAGTGGACAGTGATCC+TGG + chr7_2:65526006-65526025 None:intergenic 45.0%
ATGTGTGGGAGGGATACTTA+TGG - chr7_2:65526111-65526130 Msa1069730:intron 45.0%
!! TTCAAAAATATAAAATTTAA+AGG + chr7_2:65525043-65525062 None:intergenic 5.0%
!! TGTTATTATTTATATATAAT+TGG - chr7_2:65525928-65525947 Msa1069730:intron 5.0%
!! AATGGCAAACAGGTACTGGG+TGG - chr7_2:65520655-65520674 Msa1069730:three_prime_UTR 50.0%
CTTGGTGAGATCATCGCTGA+GGG + chr7_2:65520935-65520954 None:intergenic 50.0%
CAGGCGTCAGATTGAAGAAC+TGG - chr7_2:65521092-65521111 Msa1069730:three_prime_UTR 50.0%
GAAGAACTGGAGCGAGTTTC+CGG - chr7_2:65521105-65521124 Msa1069730:three_prime_UTR 50.0%
! GTTTCCGGTGTTAACACTGC+TGG - chr7_2:65521120-65521139 Msa1069730:exon 50.0%
GAGACCAGCAGTGTTAACAC+CGG + chr7_2:65521127-65521146 None:intergenic 50.0%
TCCCACTATGTCGCCTTTGA+AGG - chr7_2:65521292-65521311 Msa1069730:intron 50.0%
CTCCTTCAAAGGCGACATAG+TGG + chr7_2:65521297-65521316 None:intergenic 50.0%
TACCCCATCTTGGACAAACC+GGG + chr7_2:65522131-65522150 None:intergenic 50.0%
CTACCCCATCTTGGACAAAC+CGG + chr7_2:65522132-65522151 None:intergenic 50.0%
!! CTGCAATGTTGGCTTCAGCT+CGG - chr7_2:65522258-65522277 Msa1069730:CDS 50.0%
CACCCTTTCACACTCACTGA+AGG - chr7_2:65522477-65522496 Msa1069730:intron 50.0%
CCCCTTCAGTGAGTGTGAAA+GGG + chr7_2:65522482-65522501 None:intergenic 50.0%
CCCTTTCACACTCACTGAAG+GGG - chr7_2:65522479-65522498 Msa1069730:intron 50.0%
ACCCCTTCAGTGAGTGTGAA+AGG + chr7_2:65522483-65522502 None:intergenic 50.0%
GGAGTGGATCCTCTCATGTT+GGG - chr7_2:65522749-65522768 Msa1069730:intron 50.0%
GGGTCAGCCGGAATAAACTT+TGG - chr7_2:65522863-65522882 Msa1069730:intron 50.0%
ACATTTGCAGACTGTGGGCT+TGG - chr7_2:65522951-65522970 Msa1069730:CDS 50.0%
GCAGTATAACCAAGTGGACG+TGG + chr7_2:65523036-65523055 None:intergenic 50.0%
! CGCACCTTCCAGTTTGCTTT+CGG + chr7_2:65523459-65523478 None:intergenic 50.0%
CGAAAGCAAACTGGAAGGTG+CGG - chr7_2:65523457-65523476 Msa1069730:intron 50.0%
TTTCGGCCCTCATGTGTTTC+TGG + chr7_2:65524202-65524221 None:intergenic 50.0%
GTGCTATGCCAGTTATGGAG+AGG - chr7_2:65524282-65524301 Msa1069730:intron 50.0%
GTTGTCAGCGAGAAGAACCA+TGG + chr7_2:65524548-65524567 None:intergenic 50.0%
! CACAGCACAAAAGTGCATCC+AGG + chr7_2:65524603-65524622 None:intergenic 50.0%
TGGATTGCCTCCGTCTTTCT+TGG - chr7_2:65524652-65524671 Msa1069730:intron 50.0%
ATGGAGCTAAGACACATGCC+TGG + chr7_2:65524774-65524793 None:intergenic 50.0%
TCCAGCACCTACCTCTTCAT+CGG + chr7_2:65525720-65525739 None:intergenic 50.0%
!! TGAAGAGGTAGGTGCTGGAA+TGG - chr7_2:65525721-65525740 Msa1069730:intron 50.0%
GAGTATCTGCTTCACCAGCT+AGG + chr7_2:65525751-65525770 None:intergenic 50.0%
CAATCTTCTCTGAGCGCAAC+TGG - chr7_2:65525793-65525812 Msa1069730:CDS 50.0%
TGGAGCAGTCGAGGTTTCAA+CGG - chr7_2:65525948-65525967 Msa1069730:intron 50.0%
GTGGACAGTGATCCTGGAAA+CGG + chr7_2:65526000-65526019 None:intergenic 50.0%
CCTTGGTGAGATCATCGCTG+AGG + chr7_2:65520936-65520955 None:intergenic 55.0%
CCTCAGCGATGATCTCACCA+AGG - chr7_2:65520933-65520952 Msa1069730:three_prime_UTR 55.0%
! ACTGCTGGTCTCACCGTTGA+TGG - chr7_2:65521135-65521154 Msa1069730:CDS 55.0%
! AGACCCCGGTTTGTCCAAGA+TGG - chr7_2:65522124-65522143 Msa1069730:CDS 55.0%
! GACCCCGGTTTGTCCAAGAT+GGG - chr7_2:65522125-65522144 Msa1069730:CDS 55.0%
! ACCCCGGTTTGTCCAAGATG+GGG - chr7_2:65522126-65522145 Msa1069730:CDS 55.0%
ACCCCATCTTGGACAAACCG+GGG + chr7_2:65522130-65522149 None:intergenic 55.0%
GGGAGTGGATCCTCTCATGT+TGG - chr7_2:65522748-65522767 Msa1069730:intron 55.0%
CCCACAGTCTGCAAATGTCC+GGG + chr7_2:65522949-65522968 None:intergenic 55.0%
CCCGGACATTTGCAGACTGT+GGG - chr7_2:65522946-65522965 Msa1069730:CDS 55.0%
GCCCACAGTCTGCAAATGTC+CGG + chr7_2:65522950-65522969 None:intergenic 55.0%
TTTGCAGACTGTGGGCTTGG+CGG - chr7_2:65522954-65522973 Msa1069730:CDS 55.0%
GGACGTGGTCCGACAATTCA+AGG + chr7_2:65523021-65523040 None:intergenic 55.0%
ATTGTCGGACCACGTCCACT+TGG - chr7_2:65523024-65523043 Msa1069730:intron 55.0%
AACACATGAGGGCCGAAAGC+AGG - chr7_2:65524204-65524223 Msa1069730:intron 55.0%
TGAGGGGTTCTCTGCTGCAA+TGG - chr7_2:65524260-65524279 Msa1069730:intron 55.0%
TCAGGCCGAGGCTGACATTA+TGG - chr7_2:65524484-65524503 Msa1069730:intron 55.0%
TGAACAACCCTCCCCCTCAA+AGG + chr7_2:65524974-65524993 None:intergenic 55.0%
ACCGATGAAGAGGTAGGTGC+TGG - chr7_2:65525716-65525735 Msa1069730:intron 55.0%
GGAGCAGTCGAGGTTTCAAC+GGG - chr7_2:65525949-65525968 Msa1069730:intron 55.0%
GAGCAGTCGAGGTTTCAACG+GGG - chr7_2:65525950-65525969 Msa1069730:intron 55.0%
GCCCGGACATTTGCAGACTG+TGG - chr7_2:65522945-65522964 Msa1069730:CDS 60.0%
TTGCAGACTGTGGGCTTGGC+GGG - chr7_2:65522955-65522974 Msa1069730:CDS 60.0%
TGAGGGCCGAAAGCAGGAGT+TGG - chr7_2:65524210-65524229 Msa1069730:intron 60.0%
! TTCACTAGCCTCTCAGGCCG+AGG - chr7_2:65524472-65524491 Msa1069730:intron 60.0%
AATGTCAGCCTCGGCCTGAG+AGG + chr7_2:65524483-65524502 None:intergenic 60.0%
!! GAGGTAGGTGCTGGAATGGC+TGG - chr7_2:65525725-65525744 Msa1069730:intron 60.0%
CATGGGCAGAGTCCGTTTCC+AGG - chr7_2:65525985-65526004 Msa1069730:CDS 60.0%
!! GCTGGAATGGCTGGCCTAGC+TGG - chr7_2:65525734-65525753 Msa1069730:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 65520594 65526337 65520594 ID=Msa1069730;Name=Msa1069730
chr7_2 mRNA 65520594 65526337 65520594 ID=Msa1069730-mRNA-1;Parent=Msa1069730;Name=Msa1069730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=62|1|1|1|1|1|11|532|378
chr7_2 exon 65520594 65521228 65520594 ID=Msa1069730-mRNA-1:exon:13819;Parent=Msa1069730-mRNA-1
chr7_2 exon 65522077 65522156 65522077 ID=Msa1069730-mRNA-1:exon:13818;Parent=Msa1069730-mRNA-1
chr7_2 exon 65522258 65522341 65522258 ID=Msa1069730-mRNA-1:exon:13817;Parent=Msa1069730-mRNA-1
chr7_2 exon 65522628 65522753 65522628 ID=Msa1069730-mRNA-1:exon:13816;Parent=Msa1069730-mRNA-1
chr7_2 exon 65522922 65523038 65522922 ID=Msa1069730-mRNA-1:exon:13815;Parent=Msa1069730-mRNA-1
chr7_2 exon 65523238 65523379 65523238 ID=Msa1069730-mRNA-1:exon:13814;Parent=Msa1069730-mRNA-1
chr7_2 exon 65523458 65523525 65523458 ID=Msa1069730-mRNA-1:exon:13813;Parent=Msa1069730-mRNA-1
chr7_2 exon 65525564 65525663 65525564 ID=Msa1069730-mRNA-1:exon:13812;Parent=Msa1069730-mRNA-1
chr7_2 exon 65525747 65525874 65525747 ID=Msa1069730-mRNA-1:exon:13811;Parent=Msa1069730-mRNA-1
chr7_2 exon 65525977 65526045 65525977 ID=Msa1069730-mRNA-1:exon:13810;Parent=Msa1069730-mRNA-1
chr7_2 exon 65526156 65526337 65526156 ID=Msa1069730-mRNA-1:exon:13809;Parent=Msa1069730-mRNA-1
chr7_2 five_prime_UTR 65526276 65526337 65526276 ID=Msa1069730-mRNA-1:five_prime_utr;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65526156 65526275 65526156 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65525977 65526045 65525977 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65525747 65525874 65525747 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65525564 65525663 65525564 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65523458 65523525 65523458 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65523238 65523379 65523238 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65522922 65523038 65522922 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65522628 65522753 65522628 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65522258 65522341 65522258 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65522077 65522156 65522077 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 CDS 65521126 65521228 65521126 ID=Msa1069730-mRNA-1:cds;Parent=Msa1069730-mRNA-1
chr7_2 three_prime_UTR 65520594 65521125 65520594 ID=Msa1069730-mRNA-1:three_prime_utr;Parent=Msa1069730-mRNA-1
Gene Sequence

>Msa1069730

ATGGCAAACAGGTACTGGGTGGTGTCTCTCCCCGTCCAGAACAACAACTCTTCTTCTTCGATTTGGAACCAATTGCAGCAAAATATCTCTAAGCATTCCTTCGATACTCCTCTCTACAGATTCAACATTCCTAATCTCCGTGTTGGAACTCTAGATTCTCTTCTCTCCCTCAGCGATGATCTCACCAAGTCTAATGCTTTCATGGAAGGTGTTTCGAGCAAGATCAGGCGTCAGATTGAAGAACTGGAGCGAGTTTCCGGTGTTAACACTGCTGGTCTCACCGTTGATGGAGTTCCCGTTGATTCATACTTGACTAGATTTGTTTGGGACGATGCTAAGTATCCCACTATGTCGCCTTTGAAGGAGATTGTTGATGGCATTCATAGTCAAGTCGCTAAGATTGAGGATGATCTCAAGGTTCGTGTTTCCGAGTATAATAATATTCGAAGTCAGCTCAATGCTATTAACCGAAAGCAAACTGGAAGCTTAGCAGTTCGTGATCTTTCTAACTTGGTAAAACCAGAGGACATTATAACTTCAGAACATTTAACTACCCTGCTTGCGATTGTATCCAAGTATTCACAGAAGGATTGGCTTGAAAGCTATGAAACATTGACTAGCTATGTGGTCCCAAGATCTTCTAAGAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAATCGTGTGGCAGACAATTTTAGAACTAGTGCACGTGAAAAAGGGTTCCAAATTCGTGATTTTGAATACAGTCCAGAAACACATGAGGGCCGAAAGCAGGAGTTGGATAAATTGATGCAAGATCAGGAAAGTTTGAGGGGTTCTCTGCTGCAATGGTGCTATGCCAGTTATGGAGAGGTTTTCAGCTCCTGGATGCACTTTTGTGCTGTGCGCTTATTTTCTGAAAGCATTCTGAGATATGGATTGCCTCCGTCTTTCTTGGCATGTGTCTTAGCTCCATCTGTAAAAGCCGAGAAGAAAGTACGTTCAATCCTTGAAGGGTTGAGTGATAGCTCAAACAGTGCATACTGGAAAACCGATGAAGAGGTAGGTGCTGGAATGGCTGGCCTAGCTGGTGAAGCAGATACTCACCCATATGTTTCTTTCACTATCAATCTTCTCTGA

Protein sequence

>Msa1069730

MANRYWVVSLPVQNNNSSSSIWNQLQQNISKHSFDTPLYRFNIPNLRVGTLDSLLSLSDDLTKSNAFMEGVSSKIRRQIEELERVSGVNTAGLTVDGVPVDSYLTRFVWDDAKYPTMSPLKEIVDGIHSQVAKIEDDLKVRVSEYNNIRSQLNAINRKQTGSLAVRDLSNLVKPEDIITSEHLTTLLAIVSKYSQKDWLESYETLTSYVVPRSSKKLYEDNEYALYTVTLFNRVADNFRTSAREKGFQIRDFEYSPETHEGRKQELDKLMQDQESLRGSLLQWCYASYGEVFSSWMHFCAVRLFSESILRYGLPPSFLACVLAPSVKAEKKVRSILEGLSDSSNSAYWKTDEEVGAGMAGLAGEADTHPYVSFTINLL*