AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1071930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071930 MtrunA17_Chr1g0210231 82.353 51 6 2 38 87 221 269 3.95e-19 80.1
Msa1071930 MtrunA17_Chr8g0360481 68.627 51 13 2 38 87 203 251 1.67e-14 67.0
Msa1071930 MtrunA17_Chr1g0188261 50.725 69 28 2 19 87 170 232 9.23e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1071930 AT3G10420.2 74.510 51 10 2 38 87 232 280 4.69e-16 71.6
Msa1071930 AT3G10420.1 74.510 51 10 2 38 87 232 280 7.30e-16 71.2
Msa1071930 AT1G73170.1 62.745 51 16 2 38 87 216 264 1.41e-12 62.0
Msa1071930 AT1G73170.3 62.745 51 16 2 38 87 216 264 1.89e-12 61.6
Msa1071930 AT1G73170.2 62.745 51 16 2 38 87 88 136 2.28e-12 61.2
Msa1071930 AT1G33290.1 50.000 70 27 3 19 87 169 231 6.87e-12 59.7
Msa1071930 AT1G33290.3 50.000 70 27 3 19 87 95 157 8.90e-12 59.3

Find 52 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTCCCTCATTTGGCTTT+GGG 0.251206 7_2:+68780003 Msa1071930:three_prime_UTR
TCTGGTCCCTCATTTGGCTT+TGG 0.257586 7_2:+68780002 Msa1071930:three_prime_UTR
GGTTCCTCTGGTCCCTCATT+TGG 0.282892 7_2:+68779996 Msa1071930:three_prime_UTR
TTCAATGGGTTTAGTAATAT+CGG 0.290969 7_2:+68776802 Msa1071930:CDS
ACAAAGATGATGCAAGAAAT+TGG 0.300447 7_2:+68780040 Msa1071930:three_prime_UTR
GTGGATACATCCAATGAAAT+TGG 0.303806 7_2:+68778118 Msa1071930:CDS
GGTGGAGATGTTCTTCTTGC+AGG 0.311714 7_2:+68778142 Msa1071930:CDS
TTCATTGCTGCTGGTTCCTC+TGG 0.329963 7_2:+68779984 Msa1071930:three_prime_UTR
TCATCTTTGTCCTATTCTAT+AGG 0.336405 7_2:-68780027 None:intergenic
ATCTCCACCTCCAATTTCAT+TGG 0.369281 7_2:-68778128 None:intergenic
CAATGCTGCATATTCACATT+TGG 0.374960 7_2:-68778199 None:intergenic
TGTTGGCTCTTCATTGCTGC+TGG 0.375727 7_2:+68779975 Msa1071930:three_prime_UTR
GTTGCTGTTAGATCTTTCAA+TGG 0.407817 7_2:+68776787 Msa1071930:CDS
GGGCTTAAATACTACTTGTT+GGG 0.410633 7_2:+68780226 Msa1071930:three_prime_UTR
TGGGCTTAAATACTACTTGT+TGG 0.414964 7_2:+68780225 Msa1071930:three_prime_UTR
GTGTGAAGGATTCAGCAATA+TGG 0.428666 7_2:+68780185 Msa1071930:three_prime_UTR
AAAGAGGATGCAAGTATTGT+TGG 0.439321 7_2:+68779958 Msa1071930:three_prime_UTR
CATGAAGCACGTAGCGATAG+TGG 0.449986 7_2:+68778099 Msa1071930:CDS
TTGCTGTTAGATCTTTCAAT+GGG 0.455129 7_2:+68776788 Msa1071930:CDS
CAAATGTGAATATGCAGCAT+TGG 0.470780 7_2:+68778200 Msa1071930:CDS
GGCTTTGGGACCTATAGAAT+AGG 0.480062 7_2:+68780017 Msa1071930:three_prime_UTR
GTTGCTGTTAGATCTTTCAA+TGG 0.483907 7_2:+68776762 Msa1071930:intron
GATGTTCTTCTTGCAGGCAT+AGG 0.487244 7_2:+68778148 Msa1071930:CDS
ATGTCTGAAGAAGCTTTGAT+TGG 0.490771 7_2:+68778044 Msa1071930:intron
TAAAGTTGAACATGGTAGAA+AGG 0.496799 7_2:-68780399 None:intergenic
ATACTTGCATCCTCTTTACA+TGG 0.501795 7_2:-68779952 None:intergenic
TTGATTGGGCAGAGACTGCT+AGG 0.514063 7_2:+68778059 Msa1071930:CDS
TTGCTGTTAGATCTTTCAAT+GGG 0.517313 7_2:+68776763 Msa1071930:intron
TGGCAAATGAATGGCAATGT+TGG 0.517863 7_2:+68780205 Msa1071930:three_prime_UTR
GGCAAATGAATGGCAATGTT+GGG 0.524844 7_2:+68780206 Msa1071930:three_prime_UTR
CCACTGTCAGCATGAGAGAA+AGG 0.525406 7_2:-68780335 None:intergenic
TAAATACATCATATTCTGCT+TGG 0.529650 7_2:-68780149 None:intergenic
AAATGTGAATATGCAGCATT+GGG 0.532173 7_2:+68778201 Msa1071930:CDS
AACATACAAAAGGAGAAGAA+AGG 0.533617 7_2:+68780085 Msa1071930:three_prime_UTR
GAATCCTTCACACTATCTGC+AGG 0.534749 7_2:-68780175 None:intergenic
CTTAAATACTACTTGTTGGG+AGG 0.541392 7_2:+68780229 Msa1071930:three_prime_UTR
CTTCTTGCAGGCATAGGCAT+AGG 0.545790 7_2:+68778154 Msa1071930:CDS
ACATCCAATGAAATTGGAGG+TGG 0.549569 7_2:+68778124 Msa1071930:CDS
GGCAGAGACTGCTAGGATGT+TGG 0.549676 7_2:+68778066 Msa1071930:CDS
ATAGGTCCCAAAGCCAAATG+AGG 0.563237 7_2:-68780009 None:intergenic
TCAGCAATATGGCAAATGAA+TGG 0.566898 7_2:+68780196 Msa1071930:three_prime_UTR
CCTTTCTCTCATGCTGACAG+TGG 0.568781 7_2:+68780335 Msa1071930:three_prime_UTR
AGGATTAGAACCATGTAAAG+AGG 0.571409 7_2:+68779942 Msa1071930:intron
TGTCTGAAGAAGCTTTGATT+GGG 0.584292 7_2:+68778045 Msa1071930:intron
AGCACCTGCAGATAGTGTGA+AGG 0.594876 7_2:+68780171 Msa1071930:three_prime_UTR
GATACATCCAATGAAATTGG+AGG 0.601573 7_2:+68778121 Msa1071930:CDS
GCATAGGCATAGGCAAGGCA+AGG 0.608211 7_2:+68778164 Msa1071930:CDS
TGCAGGCATAGGCATAGGCA+AGG 0.611887 7_2:+68778159 Msa1071930:CDS
TAGGTCCCAAAGCCAAATGA+GGG 0.633837 7_2:-68780008 None:intergenic
ACATGTAGTAAAGTTGAACA+TGG 0.650487 7_2:-68780407 None:intergenic
AAAGCCAAATGAGGGACCAG+AGG 0.666546 7_2:-68780000 None:intergenic
TAGGCATAGGCAAGGCAAGG+AGG 0.705253 7_2:+68778167 Msa1071930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAAAAAAAATT+AGG - chr7_2:68778414-68778433 None:intergenic 0.0%
!!! ATTTTCTTTCAAAAAAAAAA+AGG + chr7_2:68777153-68777172 Msa1071930:intron 10.0%
!! TTAGATTAATTAACAAAAAA+AGG + chr7_2:68779138-68779157 Msa1071930:intron 10.0%
!! ATCTAATAACATAAAAAAAG+GGG - chr7_2:68776703-68776722 None:intergenic 15.0%
!! GATCTAATAACATAAAAAAA+GGG - chr7_2:68776704-68776723 None:intergenic 15.0%
!! AGATCTAATAACATAAAAAA+AGG - chr7_2:68776705-68776724 None:intergenic 15.0%
!! TTTAATTAGAGTTGAATAAT+AGG + chr7_2:68777196-68777215 Msa1071930:intron 15.0%
!!! TAATTATATGTTGAGAATTT+TGG + chr7_2:68777235-68777254 Msa1071930:intron 15.0%
!! TTACTTACATAAAATAAGTT+TGG - chr7_2:68777386-68777405 None:intergenic 15.0%
!! GTAAAAGAAAATAACAATAA+CGG + chr7_2:68777701-68777720 Msa1071930:intron 15.0%
!!! AAATTTTAATGTATGTGTTA+AGG - chr7_2:68777797-68777816 None:intergenic 15.0%
!! TCAAACTAGATAAAATAAAA+AGG - chr7_2:68778024-68778043 None:intergenic 15.0%
!! CTAATATTTCACTAAAAAAT+CGG + chr7_2:68778632-68778651 Msa1071930:intron 15.0%
!! AAATTCTCAAAAAGATAAAA+AGG - chr7_2:68779071-68779090 None:intergenic 15.0%
!! AAGTTTAAATAATACTGAAA+TGG + chr7_2:68779430-68779449 Msa1071930:intron 15.0%
!! AGTTTAAATAATACTGAAAT+GGG + chr7_2:68779431-68779450 Msa1071930:intron 15.0%
!! TTTATTCTTATGTTAATGAT+AGG + chr7_2:68779922-68779941 Msa1071930:intron 15.0%
!!! ATAAATTTTGAACATACAAA+AGG + chr7_2:68780075-68780094 Msa1071930:three_prime_UTR 15.0%
!!! CTTTACATTTTTACATAGTT+TGG - chr7_2:68776668-68776687 None:intergenic 20.0%
!! TCTAATAACATAAAAAAAGG+GGG - chr7_2:68776702-68776721 None:intergenic 20.0%
!! TTAATGATATGTAGAAAAGT+AGG + chr7_2:68777054-68777073 Msa1071930:intron 20.0%
!! ACAAAATAAATAAGAACAGT+TGG - chr7_2:68777110-68777129 None:intergenic 20.0%
!!! TTATTTTGTGCAAATGTATT+TGG + chr7_2:68777121-68777140 Msa1071930:intron 20.0%
!! ATTAGAATATCGAATAAGTT+TGG - chr7_2:68777491-68777510 None:intergenic 20.0%
!! TATTCGATATTCTAATGAAT+TGG + chr7_2:68777495-68777514 Msa1071930:intron 20.0%
!! TATATGTGTTAAAAACTAAC+AGG - chr7_2:68777528-68777547 None:intergenic 20.0%
!! AAAAACATCTCTGATTATTA+CGG - chr7_2:68777748-68777767 None:intergenic 20.0%
!! AAAATAAAAAGGAAACTGAT+AGG - chr7_2:68778013-68778032 None:intergenic 20.0%
!!! ATTTTAGTAAGGTTTATGTA+AGG - chr7_2:68778489-68778508 None:intergenic 20.0%
!! TTGTTAAAAGGATATTCATT+TGG - chr7_2:68778698-68778717 None:intergenic 20.0%
!! TGTGTTATATGATTGTTAAA+AGG - chr7_2:68778710-68778729 None:intergenic 20.0%
!!! GCAATTAAATATTATCCTTT+TGG - chr7_2:68778915-68778934 None:intergenic 20.0%
!!! ATAAGTAGCATTTTTTTAGT+AGG + chr7_2:68778996-68779015 Msa1071930:intron 20.0%
!! AAGGATTCGATAAAAAAAAT+AGG - chr7_2:68779052-68779071 None:intergenic 20.0%
!! GTTTAAATAATACTGAAATG+GGG + chr7_2:68779432-68779451 Msa1071930:intron 20.0%
!!! ATGTTAATGAACCATTTTTT+TGG + chr7_2:68779885-68779904 Msa1071930:intron 20.0%
!! TTTATGTTTGTCCAAAAAAA+TGG - chr7_2:68779899-68779918 None:intergenic 20.0%
!! TTCAATGGGTTTAGTAATAT+CGG + chr7_2:68776802-68776821 Msa1071930:CDS 25.0%
!! AAGTGGGATCTTATATTTTT+CGG + chr7_2:68776841-68776860 Msa1071930:intron 25.0%
!! ATATGTTGAGAATTTTGGAT+AGG + chr7_2:68777240-68777259 Msa1071930:intron 25.0%
!! GAATTTTGGATAGGAAAAAA+TGG + chr7_2:68777249-68777268 Msa1071930:intron 25.0%
! TCATGTTGAGATATAAATTG+AGG - chr7_2:68777340-68777359 None:intergenic 25.0%
! TAATTTCGATATATGCTTCA+AGG - chr7_2:68777418-68777437 None:intergenic 25.0%
! GACTTACGAAAAACTAAAAA+GGG - chr7_2:68777469-68777488 None:intergenic 25.0%
! AACTCATTTAAATGATTGCA+GGG + chr7_2:68777859-68777878 Msa1071930:intron 25.0%
! AGTCAAACATATCACAAAAA+GGG - chr7_2:68778277-68778296 None:intergenic 25.0%
! TAGTCAAACATATCACAAAA+AGG - chr7_2:68778278-68778297 None:intergenic 25.0%
! TTGATGTTGAGATCTAAATT+GGG - chr7_2:68778323-68778342 None:intergenic 25.0%
! TTTGATGTTGAGATCTAAAT+TGG - chr7_2:68778324-68778343 None:intergenic 25.0%
! GACTTACATAAAATGAAGTT+TGG - chr7_2:68778368-68778387 None:intergenic 25.0%
! AAAAATTAGGATATGCTTCA+AGG - chr7_2:68778401-68778420 None:intergenic 25.0%
! ATGAAGAAAAGTGATGTAAA+TGG - chr7_2:68778541-68778560 None:intergenic 25.0%
! ATTTAAAGATACCAAGAGAT+TGG - chr7_2:68778781-68778800 None:intergenic 25.0%
!! AAAAATGCTACTTATATGCT+TGG - chr7_2:68778991-68779010 None:intergenic 25.0%
!!! TTTTTAGTAGGATCATTTGA+TGG + chr7_2:68779008-68779027 Msa1071930:intron 25.0%
! TAAAAAAAATAGGCAAGTGA+GGG - chr7_2:68779042-68779061 None:intergenic 25.0%
! ATAAAAAAAATAGGCAAGTG+AGG - chr7_2:68779043-68779062 None:intergenic 25.0%
! GACATAACACAAGAAAAAAT+CGG - chr7_2:68779205-68779224 None:intergenic 25.0%
!!! TTTTTTCTTGTGTTATGTCT+AGG + chr7_2:68779206-68779225 Msa1071930:intron 25.0%
! TAATACAATTACACAAGCAA+AGG - chr7_2:68779275-68779294 None:intergenic 25.0%
! AATAACAACAATATTGAGTG+AGG + chr7_2:68779365-68779384 Msa1071930:intron 25.0%
! ATTTCTACCTACTTAACATT+TGG + chr7_2:68779497-68779516 Msa1071930:intron 25.0%
! TAAATACATCATATTCTGCT+TGG - chr7_2:68780152-68780171 None:intergenic 25.0%
AAAAAAAGGGGGAAATAGTT+AGG - chr7_2:68776691-68776710 None:intergenic 30.0%
! TTGCTGTTAGATCTTTCAAT+GGG + chr7_2:68776763-68776782 Msa1071930:intron 30.0%
! TTGCTGTTAGATCTTTCAAT+GGG + chr7_2:68776763-68776782 Msa1071930:intron 30.0%
TGATGATACTAAACTGAAGT+GGG + chr7_2:68776825-68776844 Msa1071930:intron 30.0%
TTGTGCAAATGTATTTGGTT+AGG + chr7_2:68777126-68777145 Msa1071930:intron 30.0%
GATATAAATTGACGAAGTCT+TGG - chr7_2:68777301-68777320 None:intergenic 30.0%
GGACTTACGAAAAACTAAAA+AGG - chr7_2:68777470-68777489 None:intergenic 30.0%
CAAATATCTGAGTATCTGAT+AGG + chr7_2:68777615-68777634 Msa1071930:intron 30.0%
ATGTTTCATGATTTAGTGGT+TGG + chr7_2:68777649-68777668 Msa1071930:intron 30.0%
GAACTCATTTAAATGATTGC+AGG + chr7_2:68777858-68777877 Msa1071930:intron 30.0%
ACTCATTTAAATGATTGCAG+GGG + chr7_2:68777860-68777879 Msa1071930:intron 30.0%
TTGATATGTCTATTGTGAAC+TGG + chr7_2:68777900-68777919 Msa1071930:intron 30.0%
! TGAACTGGTTTACTATTTAC+TGG + chr7_2:68777915-68777934 Msa1071930:intron 30.0%
AAATGTGAATATGCAGCATT+GGG + chr7_2:68778201-68778220 Msa1071930:CDS 30.0%
TGATGTTGAGATCTAAATTG+GGG - chr7_2:68778322-68778341 None:intergenic 30.0%
! TTTTCAATCACCATGAATGA+AGG + chr7_2:68778437-68778456 Msa1071930:intron 30.0%
TAGTAAGGTTTATGTAAGGA+AGG - chr7_2:68778485-68778504 None:intergenic 30.0%
!!! GGGAAGGTATTATTTTAGTA+AGG - chr7_2:68778500-68778519 None:intergenic 30.0%
!! TCACTAAAAAATCGGTGTTT+TGG + chr7_2:68778640-68778659 Msa1071930:intron 30.0%
! TTTTCAGTGATGTAGATAGA+AGG - chr7_2:68778747-68778766 None:intergenic 30.0%
TCTATCTACATCACTGAAAA+TGG + chr7_2:68778747-68778766 Msa1071930:intron 30.0%
! AGATATTCAAGATTTTGAGC+TGG + chr7_2:68779694-68779713 Msa1071930:intron 30.0%
! GATATTCAAGATTTTGAGCT+GGG + chr7_2:68779695-68779714 Msa1071930:intron 30.0%
!! TTTTTCTCCTTTGAGTTATG+TGG - chr7_2:68779796-68779815 None:intergenic 30.0%
TGTAAATCTGTGTTTGAACA+GGG - chr7_2:68779821-68779840 None:intergenic 30.0%
TCATCTTTGTCCTATTCTAT+AGG - chr7_2:68780030-68780049 None:intergenic 30.0%
ACAAAGATGATGCAAGAAAT+TGG + chr7_2:68780040-68780059 Msa1071930:three_prime_UTR 30.0%
AACATACAAAAGGAGAAGAA+AGG + chr7_2:68780085-68780104 Msa1071930:three_prime_UTR 30.0%
AAAGGAAAAACAACTCATGA+AGG + chr7_2:68780103-68780122 Msa1071930:three_prime_UTR 30.0%
TAAAGTTGAACATGGTAGAA+AGG - chr7_2:68780402-68780421 None:intergenic 30.0%
ACATGTAGTAAAGTTGAACA+TGG - chr7_2:68780410-68780429 None:intergenic 30.0%
CTAACAGCAACAATGAAAAC+AGG - chr7_2:68776753-68776772 None:intergenic 35.0%
! GTTGCTGTTAGATCTTTCAA+TGG + chr7_2:68776762-68776781 Msa1071930:intron 35.0%
! GTTGCTGTTAGATCTTTCAA+TGG + chr7_2:68776762-68776781 Msa1071930:intron 35.0%
GTGATGATACTAAACTGAAG+TGG + chr7_2:68776824-68776843 Msa1071930:intron 35.0%
CTTCTCATATGTAATCACAG+AGG + chr7_2:68776870-68776889 Msa1071930:intron 35.0%
AAATTGAGGAAGACAAGTTG+AGG - chr7_2:68777326-68777345 None:intergenic 35.0%
! ATACTCCAACAAGTTGAAAG+TGG - chr7_2:68777566-68777585 None:intergenic 35.0%
GTGGATGTTTCATGATTTAG+TGG + chr7_2:68777645-68777664 Msa1071930:intron 35.0%
! ACTTTCTTTGAAAATGCCTC+TGG + chr7_2:68777971-68777990 Msa1071930:intron 35.0%
AAAACAGAAACAAAGTCCAG+AGG - chr7_2:68777990-68778009 None:intergenic 35.0%
! ATGTCTGAAGAAGCTTTGAT+TGG + chr7_2:68778044-68778063 Msa1071930:intron 35.0%
! TGTCTGAAGAAGCTTTGATT+GGG + chr7_2:68778045-68778064 Msa1071930:intron 35.0%
GTGGATACATCCAATGAAAT+TGG + chr7_2:68778118-68778137 Msa1071930:CDS 35.0%
GATACATCCAATGAAATTGG+AGG + chr7_2:68778121-68778140 Msa1071930:CDS 35.0%
CAATGCTGCATATTCACATT+TGG - chr7_2:68778202-68778221 None:intergenic 35.0%
CAAATGTGAATATGCAGCAT+TGG + chr7_2:68778200-68778219 Msa1071930:CDS 35.0%
TGGTACTAATCTCACTCATT+TGG + chr7_2:68778225-68778244 Msa1071930:intron 35.0%
! GTGATGTAAATGGTGATGAA+GGG - chr7_2:68778531-68778550 None:intergenic 35.0%
! AGTGATGTAAATGGTGATGA+AGG - chr7_2:68778532-68778551 None:intergenic 35.0%
!! AAAAATCGGTGTTTTGGACT+TGG + chr7_2:68778646-68778665 Msa1071930:intron 35.0%
!! AAAATCGGTGTTTTGGACTT+GGG + chr7_2:68778647-68778666 Msa1071930:intron 35.0%
! TTTGGCATCTGTGATTTTGA+GGG - chr7_2:68778680-68778699 None:intergenic 35.0%
! ATTTGGCATCTGTGATTTTG+AGG - chr7_2:68778681-68778700 None:intergenic 35.0%
TGGTGATAATACCAATCTCT+TGG + chr7_2:68778767-68778786 Msa1071930:intron 35.0%
TTTAGGTCTCAACATCCAAA+AGG + chr7_2:68778897-68778916 Msa1071930:intron 35.0%
ACAACAATATTGAGTGAGGA+TGG + chr7_2:68779369-68779388 Msa1071930:intron 35.0%
CAACAATATTGAGTGAGGAT+GGG + chr7_2:68779370-68779389 Msa1071930:intron 35.0%
CTTCAAGCCAAATGTTAAGT+AGG - chr7_2:68779507-68779526 None:intergenic 35.0%
TTTGCTTCCACATAACTCAA+AGG + chr7_2:68779786-68779805 Msa1071930:intron 35.0%
GTGTAAATCTGTGTTTGAAC+AGG - chr7_2:68779822-68779841 None:intergenic 35.0%
AGGATTAGAACCATGTAAAG+AGG + chr7_2:68779942-68779961 Msa1071930:intron 35.0%
ATACTTGCATCCTCTTTACA+TGG - chr7_2:68779955-68779974 None:intergenic 35.0%
! AAAGAGGATGCAAGTATTGT+TGG + chr7_2:68779958-68779977 Msa1071930:three_prime_UTR 35.0%
TCAGCAATATGGCAAATGAA+TGG + chr7_2:68780196-68780215 Msa1071930:three_prime_UTR 35.0%
TGGGCTTAAATACTACTTGT+TGG + chr7_2:68780225-68780244 Msa1071930:three_prime_UTR 35.0%
GGGCTTAAATACTACTTGTT+GGG + chr7_2:68780226-68780245 Msa1071930:three_prime_UTR 35.0%
! CTTAAATACTACTTGTTGGG+AGG + chr7_2:68780229-68780248 Msa1071930:three_prime_UTR 35.0%
AGCTACCACTTTCAACTTGT+TGG + chr7_2:68777558-68777577 Msa1071930:intron 40.0%
GTATCTGATAGGAAAATGCG+TGG + chr7_2:68777626-68777645 Msa1071930:intron 40.0%
ACATCCAATGAAATTGGAGG+TGG + chr7_2:68778124-68778143 Msa1071930:CDS 40.0%
ATCTCCACCTCCAATTTCAT+TGG - chr7_2:68778131-68778150 None:intergenic 40.0%
GTTGAGATCTAAATTGGGGA+AGG - chr7_2:68778318-68778337 None:intergenic 40.0%
ACAATGCACTCCTTCATTCA+TGG - chr7_2:68778450-68778469 None:intergenic 40.0%
ATGAAGGGTTTATACAGGGA+AGG - chr7_2:68778516-68778535 None:intergenic 40.0%
GGTGATGAAGGGTTTATACA+GGG - chr7_2:68778520-68778539 None:intergenic 40.0%
! TGGTGATGAAGGGTTTATAC+AGG - chr7_2:68778521-68778540 None:intergenic 40.0%
!! AAATCGGTGTTTTGGACTTG+GGG + chr7_2:68778648-68778667 Msa1071930:intron 40.0%
!! ACACCTAGAGTGCTCATTTT+AGG + chr7_2:68778880-68778899 Msa1071930:intron 40.0%
AGACCTAAAATGAGCACTCT+AGG - chr7_2:68778886-68778905 None:intergenic 40.0%
! TAGTAGGATCATTTGATGGC+TGG + chr7_2:68779012-68779031 Msa1071930:intron 40.0%
AAAAAATAGGCAAGTGAGGG+AGG - chr7_2:68779039-68779058 None:intergenic 40.0%
GGGAGATTAGAATGCATTGA+AGG + chr7_2:68779715-68779734 Msa1071930:intron 40.0%
GAATGCATTGAAGGAGTTGT+TGG + chr7_2:68779724-68779743 Msa1071930:intron 40.0%
TCAAAGTTTCCCAGTGTGTT+TGG - chr7_2:68779750-68779769 None:intergenic 40.0%
ACACTGGGAAACTTTGATGA+AGG + chr7_2:68779753-68779772 Msa1071930:intron 40.0%
GTGTGAAGGATTCAGCAATA+TGG + chr7_2:68780185-68780204 Msa1071930:three_prime_UTR 40.0%
TGGCAAATGAATGGCAATGT+TGG + chr7_2:68780205-68780224 Msa1071930:three_prime_UTR 40.0%
GGCAAATGAATGGCAATGTT+GGG + chr7_2:68780206-68780225 Msa1071930:three_prime_UTR 40.0%
!!! TCCTTTTTTCATGCTGACAG+TGG - chr7_2:68780496-68780515 None:intergenic 40.0%
GATGTTCTTCTTGCAGGCAT+AGG + chr7_2:68778148-68778167 Msa1071930:CDS 45.0%
! GTGAATATGCAGCATTGGGT+TGG + chr7_2:68778205-68778224 Msa1071930:intron 45.0%
! AGAGTGCTCAGTTTAGTGCT+CGG + chr7_2:68778950-68778969 Msa1071930:intron 45.0%
AGTTGTTGGCCAAACACACT+GGG + chr7_2:68779738-68779757 Msa1071930:intron 45.0%
GGAAACTTTGATGAAGGAGC+TGG + chr7_2:68779759-68779778 Msa1071930:intron 45.0%
TAGGTCCCAAAGCCAAATGA+GGG - chr7_2:68780011-68780030 None:intergenic 45.0%
ATAGGTCCCAAAGCCAAATG+AGG - chr7_2:68780012-68780031 None:intergenic 45.0%
!! GGCTTTGGGACCTATAGAAT+AGG + chr7_2:68780017-68780036 Msa1071930:three_prime_UTR 45.0%
GAATCCTTCACACTATCTGC+AGG - chr7_2:68780178-68780197 None:intergenic 45.0%
! ATGCTGACAGTGGCTTTTGT+GGG + chr7_2:68780345-68780364 Msa1071930:three_prime_UTR 45.0%
GCCACTGTCAGCATGAAAAA+AGG + chr7_2:68780492-68780511 Msa1071930:three_prime_UTR 45.0%
AGAATCCTGCTCTTCGCATC+AGG + chr7_2:68777587-68777606 Msa1071930:intron 50.0%
TTGATTGGGCAGAGACTGCT+AGG + chr7_2:68778059-68778078 Msa1071930:CDS 50.0%
CATGAAGCACGTAGCGATAG+TGG + chr7_2:68778099-68778118 Msa1071930:CDS 50.0%
GGTGGAGATGTTCTTCTTGC+AGG + chr7_2:68778142-68778161 Msa1071930:CDS 50.0%
CTTCTTGCAGGCATAGGCAT+AGG + chr7_2:68778154-68778173 Msa1071930:CDS 50.0%
GAGTTGTTGGCCAAACACAC+TGG + chr7_2:68779737-68779756 Msa1071930:intron 50.0%
!! TGTTGGCTCTTCATTGCTGC+TGG + chr7_2:68779975-68779994 Msa1071930:three_prime_UTR 50.0%
!! TTCATTGCTGCTGGTTCCTC+TGG + chr7_2:68779984-68780003 Msa1071930:three_prime_UTR 50.0%
AAAGCCAAATGAGGGACCAG+AGG - chr7_2:68780003-68780022 None:intergenic 50.0%
! TCTGGTCCCTCATTTGGCTT+TGG + chr7_2:68780002-68780021 Msa1071930:three_prime_UTR 50.0%
!! CTGGTCCCTCATTTGGCTTT+GGG + chr7_2:68780003-68780022 Msa1071930:three_prime_UTR 50.0%
AGCACCTGCAGATAGTGTGA+AGG + chr7_2:68780171-68780190 Msa1071930:three_prime_UTR 50.0%
CCACTGTCAGCATGAGAGAA+AGG - chr7_2:68780338-68780357 None:intergenic 50.0%
CCTTTCTCTCATGCTGACAG+TGG + chr7_2:68780335-68780354 Msa1071930:three_prime_UTR 50.0%
! CATGCTGACAGTGGCTTTTG+TGG + chr7_2:68780344-68780363 Msa1071930:three_prime_UTR 50.0%
! GCGGCTGTTACAGCTTTTGT+GGG - chr7_2:68780525-68780544 None:intergenic 50.0%
CATCACCTGATGCGAAGAGC+AGG - chr7_2:68777595-68777614 None:intergenic 55.0%
GGCAGAGACTGCTAGGATGT+TGG + chr7_2:68778066-68778085 Msa1071930:CDS 55.0%
TGCAGGCATAGGCATAGGCA+AGG + chr7_2:68778159-68778178 Msa1071930:CDS 55.0%
GCATAGGCATAGGCAAGGCA+AGG + chr7_2:68778164-68778183 Msa1071930:CDS 55.0%
TAGGCATAGGCAAGGCAAGG+AGG + chr7_2:68778167-68778186 Msa1071930:CDS 55.0%
GGTTCCTCTGGTCCCTCATT+TGG + chr7_2:68779996-68780015 Msa1071930:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 68776649 68780544 68776649 ID=Msa1071930;Name=Msa1071930
chr7_2 mRNA 68776649 68780544 68776649 ID=Msa1071930-mRNA-1;Parent=Msa1071930;Name=Msa1071930-mRNA-1;_AED=0.20;_eAED=0.38;_QI=0|0|0.25|1|0|0.25|4|595|89
chr7_2 exon 68776649 68776673 68776649 ID=Msa1071930-mRNA-1:exon:15099;Parent=Msa1071930-mRNA-1
chr7_2 exon 68776773 68776842 68776773 ID=Msa1071930-mRNA-1:exon:15100;Parent=Msa1071930-mRNA-1
chr7_2 exon 68778054 68778222 68778054 ID=Msa1071930-mRNA-1:exon:15101;Parent=Msa1071930-mRNA-1
chr7_2 exon 68779944 68780544 68779944 ID=Msa1071930-mRNA-1:exon:15102;Parent=Msa1071930-mRNA-1
chr7_2 CDS 68776649 68776673 68776649 ID=Msa1071930-mRNA-1:cds;Parent=Msa1071930-mRNA-1
chr7_2 CDS 68776773 68776842 68776773 ID=Msa1071930-mRNA-1:cds;Parent=Msa1071930-mRNA-1
chr7_2 CDS 68778054 68778222 68778054 ID=Msa1071930-mRNA-1:cds;Parent=Msa1071930-mRNA-1
chr7_2 CDS 68779944 68779949 68779944 ID=Msa1071930-mRNA-1:cds;Parent=Msa1071930-mRNA-1
chr7_2 three_prime_UTR 68779950 68780544 68779950 ID=Msa1071930-mRNA-1:three_prime_utr;Parent=Msa1071930-mRNA-1
Gene Sequence

>Msa1071930

ATGGAGGATCATCGCACCAAACTATATCTTTCAATGGGTGTTGCTGTTAGATCTTTCAATGGGTTTAGTAATATCGGTGATGATACTAAACTGAAAAGCTTTGATTGGGCAGAGACTGCTAGGATGTTGGCAGATGAGTTCATGAAGCACGTAGCGATAGTGGATACATCCAATGAAATTGGAGGTGGAGATGTTCTTCTTGCAGGCATAGGCATAGGCAAGGCAAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATTGGGATTAG
Protein sequence

>Msa1071930

MEDHRTKLYLSMGVAVRSFNGFSNIGDDTKLKSFDWAETARMLADEFMKHVAIVDTSNEIGGGDVLLAGIGIGKARRMQVPNVNMQHWD*