AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1072470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072470 MtrunA17_Chr7g0254731 89.933 149 0 1 1 134 1 149 3.82e-90 258
Msa1072470 MtrunA17_Chr6g0460211 89.262 149 1 1 1 134 1 149 1.87e-89 256
Msa1072470 MtrunA17_Chr5g0440931 88.591 149 2 1 1 134 1 149 4.82e-89 255
Msa1072470 MtrunA17_Chr3g0093271 88.591 149 2 1 1 134 52 200 5.50e-89 256
Msa1072470 MtrunA17_Chr1g0188171 71.622 148 27 1 1 133 1 148 1.85e-71 211
Msa1072470 MtrunA17_Chr1g0188171 46.479 71 35 1 67 134 6 76 2.50e-12 60.1
Msa1072470 MtrunA17_Chr1g0166281 70.946 148 28 1 1 133 1 148 8.05e-71 209
Msa1072470 MtrunA17_Chr1g0166281 47.692 65 34 0 70 134 12 76 2.09e-12 60.5
Msa1072470 MtrunA17_Chr1g0185001 53.741 147 52 2 1 132 1 146 5.49e-49 154
Msa1072470 MtrunA17_Chr1g0185001 38.961 77 46 1 58 134 1 76 9.39e-12 58.5
Msa1072470 MtrunA17_Chr7g0274101 56.081 148 50 1 1 133 1 148 1.30e-45 145
Msa1072470 MtrunA17_Chr5g0398751 44.295 149 66 2 1 134 1 147 5.32e-38 125
Msa1072470 MtrunA17_Chr3g0100541 47.945 146 46 2 1 131 41 171 1.27e-34 118
Msa1072470 MtrunA17_Chr8g0366401 41.216 148 69 2 4 133 9 156 1.45e-33 115
Msa1072470 MtrunA17_Chr3g0100511 42.759 145 53 2 1 130 41 170 2.57e-29 104
Msa1072470 MtrunA17_Chr7g0245231 39.161 143 72 1 4 131 22 164 5.54e-29 103
Msa1072470 MtrunA17_Chr7g0245231 48.485 66 34 0 69 134 29 94 3.80e-13 62.8
Msa1072470 MtrunA17_Chr4g0062221 38.298 141 70 2 8 131 7 147 1.34e-27 100
Msa1072470 MtrunA17_Chr3g0100561 42.069 145 54 2 1 130 41 170 1.63e-27 100
Msa1072470 MtrunA17_Chr6g0450921 37.762 143 74 1 4 131 21 163 3.67e-27 99.0
Msa1072470 MtrunA17_Chr6g0450921 44.737 76 42 0 59 134 18 93 2.09e-13 63.5
Msa1072470 MtrunA17_Chr1g0161211 48.624 109 56 0 26 134 75 183 1.63e-26 98.2
Msa1072470 MtrunA17_Chr4g0033601 39.855 138 66 2 11 131 4 141 4.43e-26 95.9
Msa1072470 MtrunA17_Chr8g0368681 37.762 143 72 2 6 131 6 148 3.32e-25 94.0
Msa1072470 MtrunA17_Chr5g0434951 38.519 135 67 2 12 131 4 137 9.36e-24 89.4
Msa1072470 MtrunA17_Chr8g0391691 41.985 131 61 1 12 127 36 166 1.02e-23 90.9
Msa1072470 MtrunA17_Chr3g0100501 41.860 129 37 2 1 129 41 131 4.37e-23 87.8
Msa1072470 MtrunA17_Chr8g0392951 40.000 135 65 3 12 131 24 157 4.77e-23 88.6
Msa1072470 MtrunA17_Chr7g0267751 39.041 146 71 3 1 131 429 571 1.65e-22 91.7
Msa1072470 MtrunA17_Chr1g0169581 35.766 137 71 2 12 131 4 140 1.00e-21 84.3
Msa1072470 MtrunA17_Chr3g0111371 37.778 135 65 2 12 131 5 135 2.85e-21 83.2
Msa1072470 MtrunA17_Chr6g0482731 35.971 139 72 2 12 134 26 163 3.91e-21 83.6
Msa1072470 MtrunA17_Chr7g0256701 37.415 147 72 3 5 131 66 212 7.11e-21 84.0
Msa1072470 MtrunA17_Chr3g0100461 63.636 55 20 0 78 132 53 107 1.35e-20 80.9
Msa1072470 MtrunA17_Chr7g0245911 35.172 145 70 3 11 131 46 190 3.07e-20 82.0
Msa1072470 MtrunA17_Chr5g0444171 36.054 147 75 4 1 131 386 529 8.77e-20 84.0
Msa1072470 MtrunA17_Chr8g0385341 34.932 146 77 3 1 131 324 466 1.11e-19 83.6
Msa1072470 MtrunA17_Chr1g0176751 34.247 146 78 3 1 131 418 560 1.49e-19 83.6
Msa1072470 MtrunA17_Chr4g0064231 37.908 153 62 4 12 131 64 216 1.66e-19 80.5
Msa1072470 MtrunA17_Chr1g0200601 36.486 148 72 4 1 131 324 466 1.93e-19 82.8
Msa1072470 MtrunA17_Chr7g0256171 40.426 141 65 3 11 133 4 143 3.78e-19 78.2
Msa1072470 MtrunA17_Chr4g0074811 34.694 147 77 4 1 131 385 528 4.85e-19 82.0
Msa1072470 MtrunA17_Chr3g0131181 33.562 146 79 3 1 131 323 465 7.06e-19 81.3
Msa1072470 MtrunA17_Chr7g0242561 34.247 146 80 2 1 131 350 494 1.82e-18 80.1
Msa1072470 MtrunA17_Chr7g0225921 31.690 142 77 4 8 132 2 140 2.91e-18 75.5
Msa1072470 MtrunA17_Chr4g0059951 33.108 148 79 5 1 131 367 511 4.21e-18 79.3
Msa1072470 MtrunA17_Chr3g0100471 54.667 75 19 1 1 60 41 115 4.48e-18 74.3
Msa1072470 MtrunA17_Chr5g0397101 33.784 148 77 4 1 131 360 503 5.69e-18 79.0
Msa1072470 MtrunA17_Chr1g0157131 33.108 148 78 4 1 131 368 511 6.00e-18 79.0
Msa1072470 MtrunA17_Chr8g0387671 33.784 148 77 4 1 131 360 503 8.97e-18 78.2
Msa1072470 MtrunA17_Chr3g0098951 33.553 152 79 3 1 131 377 527 1.47e-17 77.8
Msa1072470 MtrunA17_Chr8g0351681 33.108 148 76 3 7 131 44 191 1.60e-17 74.7
Msa1072470 MtrunA17_Chr1g0170281 32.877 146 80 3 1 131 412 554 1.73e-17 77.4
Msa1072470 MtrunA17_Chr3g0116141 31.655 139 69 4 13 131 6 138 2.71e-17 72.8
Msa1072470 MtrunA17_Chr3g0116151 31.655 139 69 4 13 131 7 139 2.83e-17 72.8
Msa1072470 MtrunA17_Chr0c02g0489761 34.247 146 79 3 1 131 372 515 4.07e-17 76.3
Msa1072470 MtrunA17_Chr0c02g0489761 38.554 83 48 1 53 132 363 445 6.90e-11 58.5
Msa1072470 MtrunA17_Chr4g0057651 32.857 140 69 5 12 132 6 139 7.59e-17 71.6
Msa1072470 MtrunA17_Chr5g0441691 32.877 146 81 3 1 131 362 505 1.01e-16 75.1
Msa1072470 MtrunA17_Chr5g0448721 31.507 146 82 3 1 131 390 532 1.37e-16 74.7
Msa1072470 MtrunA17_Chr1g0169621 30.488 164 72 3 12 133 4 167 1.91e-16 71.2
Msa1072470 MtrunA17_Chr4g0057641 32.143 140 70 5 12 132 6 139 3.79e-16 70.1
Msa1072470 MtrunA17_Chr4g0033371 31.973 147 82 4 1 132 366 509 5.59e-16 73.2
Msa1072470 MtrunA17_Chr4g0074791 34.058 138 79 6 1 131 390 522 8.95e-16 72.4
Msa1072470 MtrunA17_Chr4g0044961 35.036 137 72 4 10 131 55 189 1.46e-15 69.7
Msa1072470 MtrunA17_Chr4g0057661 31.429 140 71 5 12 132 6 139 3.22e-15 67.4
Msa1072470 MtrunA17_Chr2g0329371 36.429 140 70 3 11 131 63 202 4.31e-15 68.6
Msa1072470 MtrunA17_Chr6g0459231 29.286 140 83 3 8 132 4 142 4.69e-15 67.0
Msa1072470 MtrunA17_Chr5g0402331 35.000 140 68 4 12 132 48 183 5.13e-15 68.2
Msa1072470 MtrunA17_Chr5g0402361 40.000 95 56 1 38 132 89 182 1.63e-14 68.6
Msa1072470 MtrunA17_Chr5g0402361 35.000 140 68 4 12 132 220 355 3.65e-14 67.8
Msa1072470 MtrunA17_Chr1g0173541 28.188 149 89 3 1 133 346 492 2.31e-14 68.6
Msa1072470 MtrunA17_Chr5g0396261 34.234 111 63 2 26 130 6 112 2.43e-13 62.0
Msa1072470 MtrunA17_Chr3g0121191 30.469 128 82 2 11 132 92 218 2.79e-13 64.3
Msa1072470 MtrunA17_Chr1g0176421 28.090 178 78 4 1 131 455 629 2.84e-13 65.5
Msa1072470 MtrunA17_Chr7g0257751 27.517 149 90 3 1 133 352 498 7.47e-13 64.3
Msa1072470 MtrunA17_Chr5g0409441 27.737 137 84 1 6 127 16 152 9.33e-13 61.6
Msa1072470 MtrunA17_Chr4g0042491 44.595 74 41 0 58 131 102 175 6.40e-12 59.7
Msa1072470 MtrunA17_Chr8g0373691 28.889 135 79 3 13 131 54 187 6.13e-11 57.4
Msa1072470 MtrunA17_Chr7g0252401 28.671 143 80 4 1 127 23 159 8.14e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1072470 AT3G43810.2 89.189 148 1 1 1 133 1 148 9.67e-90 259
Msa1072470 AT3G43810.2 45.455 77 41 1 58 134 1 76 3.32e-13 64.3
Msa1072470 AT2G27030.3 88.591 149 2 1 1 134 1 149 2.29e-89 257
Msa1072470 AT3G43810.1 89.262 149 1 1 1 134 1 149 2.59e-89 256
Msa1072470 AT5G21274.1 88.591 149 2 1 1 134 1 149 7.02e-89 255
Msa1072470 AT3G56800.1 88.591 149 2 1 1 134 1 149 7.84e-89 254
Msa1072470 AT2G41110.1 88.591 149 2 1 1 134 1 149 7.84e-89 254
Msa1072470 AT2G27030.1 88.591 149 2 1 1 134 1 149 7.84e-89 254
Msa1072470 AT1G66410.1 86.577 149 5 1 1 134 1 149 1.95e-87 251
Msa1072470 AT5G37780.1 86.577 149 5 1 1 134 1 149 1.95e-87 251
Msa1072470 AT2G41110.2 81.988 161 2 1 1 134 1 161 1.55e-86 249
Msa1072470 AT5G37780.2 78.659 164 5 1 1 134 1 164 6.12e-85 245
Msa1072470 AT5G37780.3 73.714 175 5 1 1 134 1 175 3.49e-83 241
Msa1072470 AT1G66410.2 81.132 159 5 1 1 134 1 159 1.53e-81 237
Msa1072470 AT3G43810.4 99.083 109 1 0 26 134 5 113 6.10e-75 218
Msa1072470 AT3G43810.3 99.083 109 1 0 26 134 5 113 6.10e-75 218
Msa1072470 AT1G66410.4 96.330 109 4 0 26 134 5 113 1.42e-73 215
Msa1072470 AT1G66410.3 96.330 109 4 0 26 134 5 113 1.42e-73 215
Msa1072470 AT5G37780.4 96.330 109 4 0 26 134 28 136 1.86e-73 215
Msa1072470 AT3G22930.1 70.139 144 28 1 4 132 27 170 3.81e-69 206
Msa1072470 AT4G14640.1 68.531 143 30 1 5 132 6 148 7.97e-68 202
Msa1072470 AT4G14640.2 74.528 106 27 0 27 132 25 130 4.68e-57 174
Msa1072470 AT2G41090.1 57.047 149 46 2 1 134 1 146 5.34e-49 155
Msa1072470 AT2G41100.7 50.602 166 50 3 1 134 55 220 5.24e-44 145
Msa1072470 AT2G41100.7 45.082 122 51 2 26 131 6 127 6.41e-27 101
Msa1072470 AT2G41100.7 52.128 94 27 2 4 82 148 238 7.49e-21 85.9
Msa1072470 AT2G41100.6 50.602 166 50 3 1 134 55 220 5.24e-44 145
Msa1072470 AT2G41100.6 45.082 122 51 2 26 131 6 127 6.41e-27 101
Msa1072470 AT2G41100.6 52.128 94 27 2 4 82 148 238 7.49e-21 85.9
Msa1072470 AT2G41100.3 50.602 166 50 3 1 134 55 220 5.24e-44 145
Msa1072470 AT2G41100.3 45.082 122 51 2 26 131 6 127 6.41e-27 101
Msa1072470 AT2G41100.3 52.128 94 27 2 4 82 148 238 7.49e-21 85.9
Msa1072470 AT2G41100.4 50.602 166 50 3 1 134 90 255 1.48e-43 145
Msa1072470 AT2G41100.4 45.062 162 58 3 1 131 1 162 1.39e-37 130
Msa1072470 AT2G41100.4 52.128 94 27 2 4 82 183 273 1.35e-20 85.5
Msa1072470 AT2G41100.1 50.602 166 50 3 1 134 90 255 1.48e-43 145
Msa1072470 AT2G41100.1 45.062 162 58 3 1 131 1 162 1.39e-37 130
Msa1072470 AT2G41100.1 52.128 94 27 2 4 82 183 273 1.35e-20 85.5
Msa1072470 AT4G14640.3 64.078 103 22 1 5 92 6 108 7.69e-42 135
Msa1072470 AT3G22930.2 62.857 105 24 1 4 93 27 131 1.58e-40 132
Msa1072470 AT3G22930.2 46.774 62 33 0 70 131 35 96 1.61e-11 58.2
Msa1072470 AT3G51920.1 45.946 148 65 1 1 133 1 148 3.64e-37 124
Msa1072470 AT1G12310.1 42.857 147 67 2 3 134 4 148 3.18e-36 122
Msa1072470 AT1G62820.1 42.177 147 68 2 3 134 4 148 4.00e-36 121
Msa1072470 AT2G41100.2 52.381 126 43 2 26 134 5 130 7.47e-34 117
Msa1072470 AT2G41100.2 52.128 94 27 2 4 82 58 148 9.58e-22 86.3
Msa1072470 AT3G50360.1 42.254 142 67 1 5 131 20 161 4.49e-31 109
Msa1072470 AT3G50360.1 47.143 70 37 0 65 134 22 91 6.07e-14 65.1
Msa1072470 AT1G32250.1 38.158 152 73 2 1 131 5 156 1.32e-30 108
Msa1072470 AT3G03000.1 38.356 146 74 2 4 133 12 157 5.31e-29 103
Msa1072470 AT4G37010.2 37.324 142 74 1 5 131 24 165 1.07e-25 95.9
Msa1072470 AT4G37010.1 37.324 142 74 1 5 131 20 161 1.14e-25 95.5
Msa1072470 AT2G41100.5 51.546 97 29 2 1 82 1 94 1.21e-24 92.4
Msa1072470 AT2G41100.5 50.649 77 37 1 58 134 1 76 6.92e-18 75.1
Msa1072470 AT1G66400.1 39.130 138 67 2 12 132 15 152 1.42e-24 92.4
Msa1072470 AT1G18530.1 37.241 145 68 3 7 131 2 143 1.53e-24 92.4
Msa1072470 AT5G37770.1 40.288 139 64 3 12 131 17 155 1.54e-24 92.4
Msa1072470 AT5G37770.2 40.288 139 64 3 12 131 17 155 1.54e-24 92.4
Msa1072470 AT3G25600.1 36.424 151 73 3 1 131 1 148 6.13e-24 90.9
Msa1072470 AT2G43290.1 40.278 144 62 5 11 131 64 206 3.52e-23 90.5
Msa1072470 AT1G18210.2 37.037 135 66 2 12 131 23 153 9.84e-23 88.2
Msa1072470 AT1G18210.1 37.037 135 66 2 12 131 23 153 9.84e-23 88.2
Msa1072470 AT1G24620.1 39.286 140 69 2 9 133 34 172 1.89e-22 87.8
Msa1072470 AT4G03290.1 39.007 141 66 3 11 131 4 144 1.96e-22 87.0
Msa1072470 AT1G76040.1 36.301 146 76 3 1 131 167 310 9.00e-22 88.6
Msa1072470 AT1G76040.4 36.301 146 76 3 1 131 167 310 9.00e-22 88.6
Msa1072470 AT3G59440.1 39.855 138 63 4 12 131 51 186 1.03e-21 86.3
Msa1072470 AT1G05990.1 39.568 139 66 3 11 131 4 142 2.60e-21 84.0
Msa1072470 AT1G76040.2 36.301 146 76 3 1 131 405 548 3.21e-21 88.6
Msa1072470 AT1G73630.1 34.307 137 71 2 12 133 20 152 3.12e-20 81.6
Msa1072470 AT5G23580.1 34.932 146 77 3 1 131 316 458 2.25e-19 83.2
Msa1072470 AT3G10660.2 33.562 146 79 3 1 131 480 622 2.68e-19 83.2
Msa1072470 AT3G10660.1 33.562 146 79 3 1 131 480 622 2.68e-19 83.2
Msa1072470 AT4G12860.1 36.957 138 70 2 11 131 4 141 3.32e-19 78.6
Msa1072470 AT5G12180.1 36.735 147 74 4 1 131 367 510 5.11e-19 82.0
Msa1072470 AT3G07490.1 38.849 139 66 3 11 131 4 141 6.34e-19 77.8
Msa1072470 AT1G35670.1 34.247 146 78 3 1 131 320 462 6.51e-19 82.0
Msa1072470 AT4G21940.1 34.899 149 78 4 1 133 395 540 6.61e-19 82.0
Msa1072470 AT4G21940.2 34.899 149 78 4 1 133 395 540 6.90e-19 82.0
Msa1072470 AT4G09570.1 35.135 148 74 4 1 131 319 461 1.12e-18 81.3
Msa1072470 AT5G19360.1 36.054 147 75 4 1 131 362 505 1.59e-18 80.9
Msa1072470 AT5G04870.1 32.877 146 80 3 1 131 444 586 2.57e-18 80.1
Msa1072470 AT2G15680.1 33.099 142 78 3 5 131 43 182 2.96e-18 77.0
Msa1072470 AT1G74740.1 33.557 149 81 4 1 133 353 499 6.81e-18 79.0
Msa1072470 AT4G38230.2 32.877 146 80 3 1 131 348 490 1.25e-17 78.2
Msa1072470 AT4G38230.1 32.877 146 80 3 1 131 174 316 1.25e-17 77.8
Msa1072470 AT4G23650.1 33.784 148 77 4 1 131 372 515 1.30e-17 78.2
Msa1072470 AT4G23650.1 43.478 69 36 1 67 132 377 445 3.28e-11 59.7
Msa1072470 AT4G38230.4 32.877 146 80 3 1 131 318 460 1.37e-17 78.2
Msa1072470 AT4G38230.3 32.877 146 80 3 1 131 318 460 1.37e-17 78.2
Msa1072470 AT3G10190.1 37.956 137 67 4 12 131 70 205 1.57e-17 75.5
Msa1072470 AT3G03400.1 41.837 98 54 2 29 124 38 134 2.06e-17 73.6
Msa1072470 AT1G61950.1 41.667 108 57 3 26 131 433 536 2.39e-17 77.4
Msa1072470 AT3G03410.1 35.556 135 63 3 14 133 4 129 3.02e-17 72.8
Msa1072470 AT2G38910.1 32.192 146 81 3 1 131 428 570 3.52e-17 77.0
Msa1072470 AT5G17470.1 36.765 136 76 4 2 133 10 139 3.74e-17 73.2
Msa1072470 AT5G42380.1 37.209 129 73 3 6 131 61 184 6.14e-17 73.6
Msa1072470 AT2G41410.1 34.014 147 79 3 4 132 62 208 6.20e-17 73.9
Msa1072470 AT4G04720.2 32.886 149 81 4 1 133 373 518 7.58e-17 75.9
Msa1072470 AT4G04720.1 32.886 149 81 4 1 133 373 518 7.58e-17 75.9
Msa1072470 AT3G50770.1 32.857 140 74 3 12 131 64 203 9.16e-17 73.6
Msa1072470 AT3G50770.1 42.647 68 39 0 67 134 61 128 2.19e-12 61.6
Msa1072470 AT2G36180.1 41.129 124 64 4 12 132 20 137 1.05e-16 72.0
Msa1072470 AT1G50700.1 37.736 106 64 2 26 131 407 510 1.90e-16 74.7
Msa1072470 AT3G20410.2 37.736 106 64 2 26 131 425 528 2.56e-16 74.3
Msa1072470 AT3G20410.1 37.736 106 64 2 26 131 425 528 2.56e-16 74.3
Msa1072470 AT4G04740.4 39.806 103 58 3 30 131 406 505 3.73e-16 73.9
Msa1072470 AT4G04740.6 39.806 103 58 3 30 131 406 505 3.73e-16 73.9
Msa1072470 AT4G04740.5 39.806 103 58 3 30 131 406 505 3.73e-16 73.9
Msa1072470 AT4G04740.3 39.806 103 58 3 30 131 406 505 3.73e-16 73.9
Msa1072470 AT4G04740.1 39.806 103 58 3 30 131 406 505 3.73e-16 73.9
Msa1072470 AT4G04740.7 39.806 103 58 3 30 131 406 505 3.73e-16 73.9
Msa1072470 AT1G18890.1 35.333 150 77 6 1 133 357 503 1.12e-15 72.8
Msa1072470 AT2G17290.1 30.822 146 83 3 1 131 379 521 1.42e-15 72.4
Msa1072470 AT2G17290.2 30.822 146 83 3 1 131 379 521 1.42e-15 72.4
Msa1072470 AT4G35310.2 30.822 146 83 3 1 131 391 533 1.53e-15 72.4
Msa1072470 AT4G35310.1 30.822 146 83 3 1 131 391 533 1.53e-15 72.4
Msa1072470 AT5G12480.1 30.872 149 86 4 1 133 353 500 2.28e-15 71.6
Msa1072470 AT5G12480.2 32.215 149 84 4 1 133 259 406 2.63e-15 71.6
Msa1072470 AT3G57530.1 31.293 147 82 4 1 131 357 500 1.17e-14 69.7
Msa1072470 AT1G50700.2 32.090 134 85 4 1 131 406 536 2.43e-14 68.9
Msa1072470 AT4G04695.1 30.872 149 84 4 1 133 325 470 2.82e-14 68.6
Msa1072470 AT5G19450.2 28.188 149 90 2 1 133 351 498 4.36e-14 68.2
Msa1072470 AT5G19450.1 28.188 149 90 2 1 133 351 498 4.36e-14 68.2
Msa1072470 AT4G04700.1 32.653 147 80 4 1 131 325 468 5.09e-14 67.8
Msa1072470 AT3G51850.1 30.137 146 86 2 1 131 348 492 8.24e-14 67.4
Msa1072470 AT4G04710.2 30.612 147 83 4 1 131 326 469 8.85e-13 64.3
Msa1072470 AT4G04710.3 35.514 107 65 3 26 131 352 455 1.04e-12 64.3
Msa1072470 AT4G04710.1 35.514 107 65 3 26 131 379 482 1.09e-12 63.9
Msa1072470 AT2G31500.1 31.788 151 81 6 1 132 360 507 3.61e-12 62.8
Msa1072470 AT2G41860.1 28.767 146 88 3 1 131 348 492 7.85e-12 61.6
Msa1072470 AT2G41860.2 28.767 146 88 3 1 131 348 492 7.85e-12 61.6
Msa1072470 AT4G04710.4 30.872 149 82 5 1 131 339 484 1.34e-11 60.8
Msa1072470 AT1G76650.2 33.582 134 75 4 7 131 38 166 8.28e-11 57.0
Msa1072470 AT2G17890.1 26.974 152 84 6 1 131 404 549 9.81e-11 58.5

Find 23 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGCTCTTTCTTTGAAAA+TGG 0.158851 7_2:+69552772 None:intergenic
TGCCATAAGGTTTAGAAATT+CGG 0.219955 7_2:+69551477 None:intergenic
TCCCGAATTTCTAAACCTTA+TGG 0.275599 7_2:-69551479 Msa1072470:CDS
GCCATAAGGTTTAGAAATTC+GGG 0.288696 7_2:+69551478 None:intergenic
GCTCTGCCTCTGTTGGATTC+TGG 0.298067 7_2:+69551554 None:intergenic
CACCAAGGTTGGTCATTACA+TGG 0.419223 7_2:+69551356 None:intergenic
TAATTATGATGAGTTTGTTA+AGG 0.424704 7_2:-69551266 Msa1072470:CDS
TTTAGCTTGTTTGATAAAGA+TGG 0.429618 7_2:-69552695 Msa1072470:CDS
TCTTGTAGCTCTGCCTCTGT+TGG 0.445696 7_2:+69551547 None:intergenic
AGAAAGAGCAACATATCAAA+TGG 0.475236 7_2:-69552762 Msa1072470:exon
TGAGTTTGTTAAGGTTATGA+TGG 0.514750 7_2:-69551257 Msa1072470:CDS
GTTTGATAATTAATTTCACT+TGG 0.515900 7_2:+69551234 None:intergenic
ATTCGAGAGGCTGATGTTGA+TGG 0.520102 7_2:-69551301 Msa1072470:CDS
GAAGTAGATGCTGACGGTAA+TGG 0.522185 7_2:-69551514 Msa1072470:CDS
CGCCATGTAATGACCAACCT+TGG 0.550381 7_2:-69551358 Msa1072470:CDS
AATTTCTAAACCTTATGGCA+AGG 0.564830 7_2:-69551474 Msa1072470:CDS
GTGTTCGACAAGGATCAGAA+TGG 0.579017 7_2:-69551403 Msa1072470:CDS
GAGGCTGATGTTGATGGTGA+TGG 0.590807 7_2:-69551295 Msa1072470:CDS
TTGTTTGATAAAGATGGTGA+TGG 0.635455 7_2:-69552689 Msa1072470:intron
AGTTGATGAAATGATTCGAG+AGG 0.653094 7_2:-69551314 Msa1072470:CDS
ATAAACGAAGTAGATGCTGA+CGG 0.684480 7_2:-69551520 Msa1072470:CDS
AGCGTTTAGAGTGTTCGACA+AGG 0.713515 7_2:-69551413 Msa1072470:CDS
ATTAGGCCAGAATCCAACAG+AGG 0.733821 7_2:-69551560 Msa1072470:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAACAAAAGATATTAT+GGG + chr7_2:69551471-69551490 None:intergenic 10.0%
!! ATTAAAAACAAAAGATATTA+TGG + chr7_2:69551472-69551491 None:intergenic 10.0%
!! ATAATTTCAAAAACTATAAT+TGG + chr7_2:69552150-69552169 None:intergenic 10.0%
!!! AATTATAGTTTTTGAAATTA+TGG - chr7_2:69552149-69552168 Msa1072470:intron 10.0%
!! ATTTGTATATTACAAATAAA+TGG - chr7_2:69552199-69552218 Msa1072470:intron 10.0%
!! TTAAAAACAAAAGATATTAT+GGG + chr7_2:69551471-69551490 None:intergenic 10.0%
!! ATTAAAAACAAAAGATATTA+TGG + chr7_2:69551472-69551491 None:intergenic 10.0%
!! ATAATTTCAAAAACTATAAT+TGG + chr7_2:69552150-69552169 None:intergenic 10.0%
!!! AATTATAGTTTTTGAAATTA+TGG - chr7_2:69552149-69552168 Msa1072470:intron 10.0%
!! ATTTGTATATTACAAATAAA+TGG - chr7_2:69552199-69552218 Msa1072470:intron 10.0%
!! TATATTGAAAAATGTCTAAT+CGG + chr7_2:69551545-69551564 None:intergenic 15.0%
!!! ATTAGACATTTTTCAATATA+GGG - chr7_2:69551545-69551564 Msa1072470:CDS 15.0%
!! TATATTGAAAAATGTCTAAT+CGG + chr7_2:69551545-69551564 None:intergenic 15.0%
!!! ATTAGACATTTTTCAATATA+GGG - chr7_2:69551545-69551564 Msa1072470:CDS 15.0%
!! TGATAATATGCAATAAAAGA+GGG + chr7_2:69551429-69551448 None:intergenic 20.0%
!! ATGATAATATGCAATAAAAG+AGG + chr7_2:69551430-69551449 None:intergenic 20.0%
!!! GATTAGACATTTTTCAATAT+AGG - chr7_2:69551544-69551563 Msa1072470:CDS 20.0%
!! ATAACATTATATGACTTTGA+AGG - chr7_2:69552424-69552443 Msa1072470:intron 20.0%
!!! TAATTATGATGAGTTTGTTA+AGG - chr7_2:69552780-69552799 Msa1072470:five_prime_UTR 20.0%
!! TGATAATATGCAATAAAAGA+GGG + chr7_2:69551429-69551448 None:intergenic 20.0%
!! ATGATAATATGCAATAAAAG+AGG + chr7_2:69551430-69551449 None:intergenic 20.0%
!!! GATTAGACATTTTTCAATAT+AGG - chr7_2:69551544-69551563 Msa1072470:CDS 20.0%
!! ATAACATTATATGACTTTGA+AGG - chr7_2:69552424-69552443 Msa1072470:intron 20.0%
!!! TAATTATGATGAGTTTGTTA+AGG - chr7_2:69552780-69552799 Msa1072470:five_prime_UTR 20.0%
!!! TTTAGCTTGTTTGATAAAGA+TGG - chr7_2:69551351-69551370 Msa1072470:CDS 25.0%
! AAACAAAAGATATTATGGGA+GGG + chr7_2:69551467-69551486 None:intergenic 25.0%
! AAAACAAAAGATATTATGGG+AGG + chr7_2:69551468-69551487 None:intergenic 25.0%
! ACTAATGTAATCATATGTGT+TGG + chr7_2:69551600-69551619 None:intergenic 25.0%
!!! ATCTAATTTTTTTGTGAGGA+GGG + chr7_2:69552059-69552078 None:intergenic 25.0%
!!! AGACATCTAATTTTTTTGTG+AGG + chr7_2:69552063-69552082 None:intergenic 25.0%
! ATAATTGTATCTCCATTCAT+GGG + chr7_2:69552116-69552135 None:intergenic 25.0%
! TATAATTGTATCTCCATTCA+TGG + chr7_2:69552117-69552136 None:intergenic 25.0%
!!! TTTAGCTTGTTTGATAAAGA+TGG - chr7_2:69551351-69551370 Msa1072470:CDS 25.0%
! AAACAAAAGATATTATGGGA+GGG + chr7_2:69551467-69551486 None:intergenic 25.0%
! AAAACAAAAGATATTATGGG+AGG + chr7_2:69551468-69551487 None:intergenic 25.0%
! ACTAATGTAATCATATGTGT+TGG + chr7_2:69551600-69551619 None:intergenic 25.0%
!!! ATCTAATTTTTTTGTGAGGA+GGG + chr7_2:69552059-69552078 None:intergenic 25.0%
!!! AGACATCTAATTTTTTTGTG+AGG + chr7_2:69552063-69552082 None:intergenic 25.0%
! ATAATTGTATCTCCATTCAT+GGG + chr7_2:69552116-69552135 None:intergenic 25.0%
! TATAATTGTATCTCCATTCA+TGG + chr7_2:69552117-69552136 None:intergenic 25.0%
! TGTTGCTCTTTCTTTGAAAA+TGG + chr7_2:69551277-69551296 None:intergenic 30.0%
AGAAAGAGCAACATATCAAA+TGG - chr7_2:69551284-69551303 Msa1072470:CDS 30.0%
TTGTTTGATAAAGATGGTGA+TGG - chr7_2:69551357-69551376 Msa1072470:CDS 30.0%
TAATATGCAATAAAAGAGGG+AGG + chr7_2:69551426-69551445 None:intergenic 30.0%
GTCTCAAAAGAGAAGTTTAA+AGG - chr7_2:69551796-69551815 Msa1072470:intron 30.0%
! TCGAATATAAGACTTTTGCT+TGG + chr7_2:69551960-69551979 None:intergenic 30.0%
!!! CATCTAATTTTTTTGTGAGG+AGG + chr7_2:69552060-69552079 None:intergenic 30.0%
TGTAAAAAATTGCCCATGAA+TGG - chr7_2:69552101-69552120 Msa1072470:intron 30.0%
! ACATCTTCAATTTGAAGTGT+TGG + chr7_2:69552251-69552270 None:intergenic 30.0%
CACTTCAAATTGAAGATGTA+TGG - chr7_2:69552252-69552271 Msa1072470:intron 30.0%
ATTTAGTGTCATGTATGTGT+CGG + chr7_2:69552285-69552304 None:intergenic 30.0%
ATACATGACACTAAATCATG+CGG - chr7_2:69552289-69552308 Msa1072470:intron 30.0%
TGCCATAAGGTTTAGAAATT+CGG + chr7_2:69552572-69552591 None:intergenic 30.0%
AATTTCTAAACCTTATGGCA+AGG - chr7_2:69552572-69552591 Msa1072470:intron 30.0%
!! TGAGTTTGTTAAGGTTATGA+TGG - chr7_2:69552789-69552808 Msa1072470:five_prime_UTR 30.0%
! TGTTGCTCTTTCTTTGAAAA+TGG + chr7_2:69551277-69551296 None:intergenic 30.0%
AGAAAGAGCAACATATCAAA+TGG - chr7_2:69551284-69551303 Msa1072470:CDS 30.0%
TTGTTTGATAAAGATGGTGA+TGG - chr7_2:69551357-69551376 Msa1072470:CDS 30.0%
TAATATGCAATAAAAGAGGG+AGG + chr7_2:69551426-69551445 None:intergenic 30.0%
GTCTCAAAAGAGAAGTTTAA+AGG - chr7_2:69551796-69551815 Msa1072470:intron 30.0%
! TCGAATATAAGACTTTTGCT+TGG + chr7_2:69551960-69551979 None:intergenic 30.0%
!!! CATCTAATTTTTTTGTGAGG+AGG + chr7_2:69552060-69552079 None:intergenic 30.0%
TGTAAAAAATTGCCCATGAA+TGG - chr7_2:69552101-69552120 Msa1072470:intron 30.0%
! ACATCTTCAATTTGAAGTGT+TGG + chr7_2:69552251-69552270 None:intergenic 30.0%
CACTTCAAATTGAAGATGTA+TGG - chr7_2:69552252-69552271 Msa1072470:intron 30.0%
ATTTAGTGTCATGTATGTGT+CGG + chr7_2:69552285-69552304 None:intergenic 30.0%
ATACATGACACTAAATCATG+CGG - chr7_2:69552289-69552308 Msa1072470:intron 30.0%
TGCCATAAGGTTTAGAAATT+CGG + chr7_2:69552572-69552591 None:intergenic 30.0%
AATTTCTAAACCTTATGGCA+AGG - chr7_2:69552572-69552591 Msa1072470:intron 30.0%
!! TGAGTTTGTTAAGGTTATGA+TGG - chr7_2:69552789-69552808 Msa1072470:five_prime_UTR 30.0%
AAAGAGGGAGGAAAAATGAA+CGG + chr7_2:69551414-69551433 None:intergenic 35.0%
ACATACTCTGACATAGAAAC+CGG + chr7_2:69551686-69551705 None:intergenic 35.0%
!! CTTCAATTTGAAGTGTTGGT+CGG + chr7_2:69552247-69552266 None:intergenic 35.0%
TCAAATTGAAGATGTATGGC+CGG - chr7_2:69552256-69552275 Msa1072470:intron 35.0%
ATAAACGAAGTAGATGCTGA+CGG - chr7_2:69552526-69552545 Msa1072470:intron 35.0%
TCCCGAATTTCTAAACCTTA+TGG - chr7_2:69552567-69552586 Msa1072470:intron 35.0%
GCCATAAGGTTTAGAAATTC+GGG + chr7_2:69552571-69552590 None:intergenic 35.0%
! CTTTCATTTTCCTTGCCATA+AGG + chr7_2:69552585-69552604 None:intergenic 35.0%
!! AGTTGATGAAATGATTCGAG+AGG - chr7_2:69552732-69552751 Msa1072470:CDS 35.0%
AAAGAGGGAGGAAAAATGAA+CGG + chr7_2:69551414-69551433 None:intergenic 35.0%
ACATACTCTGACATAGAAAC+CGG + chr7_2:69551686-69551705 None:intergenic 35.0%
!! CTTCAATTTGAAGTGTTGGT+CGG + chr7_2:69552247-69552266 None:intergenic 35.0%
TCAAATTGAAGATGTATGGC+CGG - chr7_2:69552256-69552275 Msa1072470:intron 35.0%
ATAAACGAAGTAGATGCTGA+CGG - chr7_2:69552526-69552545 Msa1072470:intron 35.0%
TCCCGAATTTCTAAACCTTA+TGG - chr7_2:69552567-69552586 Msa1072470:intron 35.0%
GCCATAAGGTTTAGAAATTC+GGG + chr7_2:69552571-69552590 None:intergenic 35.0%
! CTTTCATTTTCCTTGCCATA+AGG + chr7_2:69552585-69552604 None:intergenic 35.0%
!! AGTTGATGAAATGATTCGAG+AGG - chr7_2:69552732-69552751 Msa1072470:CDS 35.0%
TCAGAGTATGTACGTCAATG+CGG - chr7_2:69551695-69551714 Msa1072470:intron 40.0%
TCCAGTGTTCTTGATTGTGT+CGG - chr7_2:69552377-69552396 Msa1072470:intron 40.0%
TGAAGGTTCCATCACAACAA+AGG - chr7_2:69552441-69552460 Msa1072470:intron 40.0%
! AGTAAGCTTTTCACCAAGGT+TGG + chr7_2:69552704-69552723 None:intergenic 40.0%
TCAGAGTATGTACGTCAATG+CGG - chr7_2:69551695-69551714 Msa1072470:intron 40.0%
TCCAGTGTTCTTGATTGTGT+CGG - chr7_2:69552377-69552396 Msa1072470:intron 40.0%
TGAAGGTTCCATCACAACAA+AGG - chr7_2:69552441-69552460 Msa1072470:intron 40.0%
! AGTAAGCTTTTCACCAAGGT+TGG + chr7_2:69552704-69552723 None:intergenic 40.0%
! TCAATGTCGTGACTTGTGAC+CGG - chr7_2:69551664-69551683 Msa1072470:intron 45.0%
TCCGACACAATCAAGAACAC+TGG + chr7_2:69552381-69552400 None:intergenic 45.0%
TCCATCACAACAAAGGAGCT+TGG - chr7_2:69552448-69552467 Msa1072470:intron 45.0%
! TCCAAGCTCCTTTGTTGTGA+TGG + chr7_2:69552452-69552471 None:intergenic 45.0%
ATTAGGCCAGAATCCAACAG+AGG - chr7_2:69552486-69552505 Msa1072470:intron 45.0%
GAAGTAGATGCTGACGGTAA+TGG - chr7_2:69552532-69552551 Msa1072470:intron 45.0%
! AGCGTTTAGAGTGTTCGACA+AGG - chr7_2:69552633-69552652 Msa1072470:intron 45.0%
GTGTTCGACAAGGATCAGAA+TGG - chr7_2:69552643-69552662 Msa1072470:intron 45.0%
! CACCAAGGTTGGTCATTACA+TGG + chr7_2:69552693-69552712 None:intergenic 45.0%
! CGTCAGTAAGCTTTTCACCA+AGG + chr7_2:69552708-69552727 None:intergenic 45.0%
ATTCGAGAGGCTGATGTTGA+TGG - chr7_2:69552745-69552764 Msa1072470:CDS 45.0%
! TCAATGTCGTGACTTGTGAC+CGG - chr7_2:69551664-69551683 Msa1072470:intron 45.0%
TCCGACACAATCAAGAACAC+TGG + chr7_2:69552381-69552400 None:intergenic 45.0%
TCCATCACAACAAAGGAGCT+TGG - chr7_2:69552448-69552467 Msa1072470:intron 45.0%
! TCCAAGCTCCTTTGTTGTGA+TGG + chr7_2:69552452-69552471 None:intergenic 45.0%
ATTAGGCCAGAATCCAACAG+AGG - chr7_2:69552486-69552505 Msa1072470:intron 45.0%
GAAGTAGATGCTGACGGTAA+TGG - chr7_2:69552532-69552551 Msa1072470:intron 45.0%
! AGCGTTTAGAGTGTTCGACA+AGG - chr7_2:69552633-69552652 Msa1072470:intron 45.0%
GTGTTCGACAAGGATCAGAA+TGG - chr7_2:69552643-69552662 Msa1072470:intron 45.0%
! CACCAAGGTTGGTCATTACA+TGG + chr7_2:69552693-69552712 None:intergenic 45.0%
! CGTCAGTAAGCTTTTCACCA+AGG + chr7_2:69552708-69552727 None:intergenic 45.0%
ATTCGAGAGGCTGATGTTGA+TGG - chr7_2:69552745-69552764 Msa1072470:CDS 45.0%
GGTTGCACTAGCATTGCGAT+TGG - chr7_2:69552170-69552189 Msa1072470:intron 50.0%
GTCATGTATGTGTCGGACAC+CGG + chr7_2:69552278-69552297 None:intergenic 50.0%
GGAACCGTGATGAGGTCATT+AGG - chr7_2:69552469-69552488 Msa1072470:intron 50.0%
CTGGCCTAATGACCTCATCA+CGG + chr7_2:69552476-69552495 None:intergenic 50.0%
! TCTTGTAGCTCTGCCTCTGT+TGG + chr7_2:69552502-69552521 None:intergenic 50.0%
CGCCATGTAATGACCAACCT+TGG - chr7_2:69552688-69552707 Msa1072470:intron 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - chr7_2:69552751-69552770 Msa1072470:exon 50.0%
GGTTGCACTAGCATTGCGAT+TGG - chr7_2:69552170-69552189 Msa1072470:intron 50.0%
GTCATGTATGTGTCGGACAC+CGG + chr7_2:69552278-69552297 None:intergenic 50.0%
GGAACCGTGATGAGGTCATT+AGG - chr7_2:69552469-69552488 Msa1072470:intron 50.0%
CTGGCCTAATGACCTCATCA+CGG + chr7_2:69552476-69552495 None:intergenic 50.0%
! TCTTGTAGCTCTGCCTCTGT+TGG + chr7_2:69552502-69552521 None:intergenic 50.0%
CGCCATGTAATGACCAACCT+TGG - chr7_2:69552688-69552707 Msa1072470:intron 50.0%
!! GAGGCTGATGTTGATGGTGA+TGG - chr7_2:69552751-69552770 Msa1072470:exon 50.0%
AGGAGCTTGGAACCGTGATG+AGG - chr7_2:69552461-69552480 Msa1072470:intron 55.0%
GCTCTGCCTCTGTTGGATTC+TGG + chr7_2:69552495-69552514 None:intergenic 55.0%
AGGAGCTTGGAACCGTGATG+AGG - chr7_2:69552461-69552480 Msa1072470:intron 55.0%
GCTCTGCCTCTGTTGGATTC+TGG + chr7_2:69552495-69552514 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 69551249 69552819 69551249 ID=Msa1072470;Name=Msa1072470
chr7_2 mRNA 69551249 69552819 69551249 ID=Msa1072470-mRNA-1;Parent=Msa1072470;Name=Msa1072470-mRNA-1;_AED=0.12;_eAED=0.13;_QI=54|0|0.5|1|1|1|2|0|134
chr7_2 exon 69551249 69551577 69551249 ID=Msa1072470-mRNA-1:exon:15480;Parent=Msa1072470-mRNA-1
chr7_2 exon 69552690 69552819 69552690 ID=Msa1072470-mRNA-1:exon:15479;Parent=Msa1072470-mRNA-1
chr7_2 five_prime_UTR 69552766 69552819 69552766 ID=Msa1072470-mRNA-1:five_prime_utr;Parent=Msa1072470-mRNA-1
chr7_2 CDS 69552690 69552765 69552690 ID=Msa1072470-mRNA-1:cds;Parent=Msa1072470-mRNA-1
chr7_2 CDS 69551249 69551577 69551249 ID=Msa1072470-mRNA-1:cds;Parent=Msa1072470-mRNA-1
Gene Sequence

>Msa1072470

ATGGCAGATCAACTCACAGATGATCAGATCTCTGAATTCAAAGAAGCATTTAGCTTGTTTGATAAAGATGGTGATGGCCAGAATCCAACAGAGGCAGAGCTACAAGACATGATAAACGAAGTAGATGCTGACGGTAATGGCACAATCGATTTTCCCGAATTTCTAAACCTTATGGCAAGGAAAATGAAAGACACAGATTCAGAAGAAGAGCTGAAAGAAGCGTTTAGAGTGTTCGACAAGGATCAGAATGGATTCATTTCTGCTGCTGAACTTCGCCATGTAATGACCAACCTTGGTGAAAAGCTTACTGACGAAGAAGTTGATGAAATGATTCGAGAGGCTGATGTTGATGGTGATGGTCAAATTAATTATGATGAGTTTGTTAAGGTTATGATGGCCAAGTGA

Protein sequence

>Msa1072470

MADQLTDDQISEFKEAFSLFDKDGDGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYDEFVKVMMAK*