Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073020 | XP_003624946.2 | 98.969 | 97 | 1 | 0 | 1 | 97 | 1 | 97 | 1.66e-59 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073020 | sp|Q96539|CH10_BRANA | 71.134 | 97 | 28 | 0 | 1 | 97 | 1 | 97 | 5.10e-46 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073020 | B7FIE8 | 98.969 | 97 | 1 | 0 | 1 | 97 | 1 | 97 | 7.93e-60 | 187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0748220 | Msa1073020 | 0.991597 | 1.683558e-188 | -8.615850e-47 |
| Msa1073020 | Msa1122370 | 0.827715 | 1.342285e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073020 | MtrunA17_Chr7g0255911 | 98.969 | 97 | 1 | 0 | 1 | 97 | 1 | 97 | 1.53e-63 | 187 |
| Msa1073020 | MtrunA17_Chr3g0139681 | 74.227 | 97 | 25 | 0 | 1 | 97 | 1 | 97 | 3.84e-48 | 148 |
| Msa1073020 | MtrunA17_Chr3g0117191 | 64.706 | 85 | 30 | 0 | 1 | 85 | 1 | 85 | 4.72e-35 | 115 |
| Msa1073020 | MtrunA17_Chr3g0117431 | 74.359 | 39 | 10 | 0 | 1 | 39 | 1 | 39 | 4.18e-15 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073020 | AT1G14980.1 | 70.103 | 97 | 29 | 0 | 1 | 97 | 1 | 97 | 5.30e-47 | 145 |
| Msa1073020 | AT1G23100.1 | 69.072 | 97 | 30 | 0 | 1 | 97 | 1 | 97 | 5.62e-45 | 140 |
| Msa1073020 | AT1G14980.2 | 70.732 | 82 | 24 | 0 | 1 | 82 | 1 | 82 | 8.82e-38 | 122 |
Find 46 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTCTGGTTTAGTTATTT+TGG | 0.077085 | 7_2:-70327238 | Msa1073020:three_prime_UTR |
| CAAAACATTTCTTAGAAATT+TGG | 0.080809 | 7_2:-70327377 | Msa1073020:three_prime_UTR |
| TCGCTTCGCCATTTCGAAAT+TGG | 0.172281 | 7_2:+70330179 | None:intergenic |
| GTCAAAGTCATTGGCGGATT+TGG | 0.232289 | 7_2:-70327510 | Msa1073020:three_prime_UTR |
| TTGTTGCTTTAGCTGAATTC+TGG | 0.244257 | 7_2:-70328990 | Msa1073020:intron |
| AAAACATTTCTTAGAAATTT+GGG | 0.271475 | 7_2:-70327376 | Msa1073020:three_prime_UTR |
| GTATGGAGATGACGATATAT+TGG | 0.325927 | 7_2:-70327551 | Msa1073020:CDS |
| TCCATTGTTCAACCGTGTTC+TGG | 0.339609 | 7_2:-70330151 | Msa1073020:CDS |
| GCTGTTGGCCCTGGCGTTCA+TGG | 0.343925 | 7_2:-70328957 | Msa1073020:CDS |
| TACATTCCATAGCCTGTTTG+TGG | 0.344028 | 7_2:-70327281 | Msa1073020:three_prime_UTR |
| TCACCTTCCTTTACAGCAAC+AGG | 0.376842 | 7_2:+70328915 | None:intergenic |
| AAAATACTAATCTTGATTGT+TGG | 0.377725 | 7_2:+70327353 | None:intergenic |
| ACAGGCTATGGAATGTAATA+AGG | 0.379259 | 7_2:+70327287 | None:intergenic |
| ACCTCAACTCCTCCGTATTC+AGG | 0.397560 | 7_2:+70328879 | None:intergenic |
| TTTGGCAGGTATTATCTGTA+TGG | 0.419891 | 7_2:-70327568 | Msa1073020:intron |
| ACTCCTTCCTGTTGCTGTAA+AGG | 0.425958 | 7_2:-70328922 | Msa1073020:CDS |
| TAAATTTAAATGCATGCCTC+TGG | 0.426058 | 7_2:-70327252 | Msa1073020:three_prime_UTR |
| CGTTTGCTCCAATTTCGAAA+TGG | 0.427778 | 7_2:-70330187 | Msa1073020:exon |
| AATTTAAATAAGCCACAAAC+AGG | 0.443958 | 7_2:+70327269 | None:intergenic |
| AGTATATAAATTACTACAGC+AGG | 0.450662 | 7_2:+70327485 | None:intergenic |
| CCGTCCTTACCATGAACGCC+AGG | 0.451462 | 7_2:+70328948 | None:intergenic |
| TATGGAGATGACGATATATT+GGG | 0.451979 | 7_2:-70327550 | Msa1073020:CDS |
| AATAAGCCACAAACAGGCTA+TGG | 0.490821 | 7_2:+70327275 | None:intergenic |
| TGGCCCTGGCGTTCATGGTA+AGG | 0.497703 | 7_2:-70328952 | Msa1073020:CDS |
| ACTGTTCTGTTACCTGAATA+CGG | 0.515420 | 7_2:-70328891 | Msa1073020:CDS |
| ATGATTGATGTCAAAGTCAT+TGG | 0.522903 | 7_2:-70327519 | Msa1073020:exon |
| AAAGTTGTTGCTGTTGGCCC+TGG | 0.524580 | 7_2:-70328966 | Msa1073020:CDS |
| GCTGTAGTAATTTATATACT+AGG | 0.535706 | 7_2:-70327482 | Msa1073020:three_prime_UTR |
| TCTGGAAAAGTTGTTGCTGT+TGG | 0.541060 | 7_2:-70328972 | Msa1073020:CDS |
| ATTGATGTCAAAGTCATTGG+CGG | 0.544417 | 7_2:-70327516 | Msa1073020:exon |
| CGGTAACAAAATTCCAGCGT+TGG | 0.547494 | 7_2:+70330101 | None:intergenic |
| ACCTGAATACGGAGGAGTTG+AGG | 0.577975 | 7_2:-70328880 | Msa1073020:CDS |
| CTTCCTGTTGCTGTAAAGGA+AGG | 0.582243 | 7_2:-70328918 | Msa1073020:CDS |
| ACCAGAACACGGTTGAACAA+TGG | 0.591274 | 7_2:+70330150 | None:intergenic |
| CCTGGCGTTCATGGTAAGGA+CGG | 0.598384 | 7_2:-70328948 | Msa1073020:CDS |
| GTTACCGGAGAAAATCTCCA+AGG | 0.620509 | 7_2:-70330085 | Msa1073020:intron |
| GTATATAAATTACTACAGCA+GGG | 0.622541 | 7_2:+70327486 | None:intergenic |
| GTCCAAAATAACTAAACCAG+AGG | 0.622937 | 7_2:+70327236 | None:intergenic |
| CTTCCTTTACAGCAACAGGA+AGG | 0.636048 | 7_2:+70328919 | None:intergenic |
| CAATCTTCTCAACCAGAACA+CGG | 0.641660 | 7_2:+70330139 | None:intergenic |
| GAGCAAACGACAGCAACACA+AGG | 0.644728 | 7_2:+70330201 | None:intergenic |
| ATGGTATGTTTGAACATGCA+TGG | 0.648776 | 7_2:+70327177 | None:intergenic |
| TATATAAATTACTACAGCAG+GGG | 0.649865 | 7_2:+70327487 | None:intergenic |
| CGTCCTTACCATGAACGCCA+GGG | 0.657122 | 7_2:+70328949 | None:intergenic |
| GAATGTAATAAGGTACGTTG+CGG | 0.660109 | 7_2:+70327297 | None:intergenic |
| GTTCTGTTACCTGAATACGG+AGG | 0.813129 | 7_2:-70328888 | Msa1073020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTAAAATCTTAAACATTT+TGG | + | chr7_2:70328114-70328133 | None:intergenic | 10.0% |
| !!! | GTTTCTTAGTTTTAATTTAT+TGG | - | chr7_2:70328647-70328666 | Msa1073020:intron | 15.0% |
| !! | ATAAAAATACATTATACCAA+TGG | + | chr7_2:70329025-70329044 | None:intergenic | 15.0% |
| !! | TAAAAAAAATTGAATAGAGA+TGG | + | chr7_2:70329127-70329146 | None:intergenic | 15.0% |
| !!! | ATATTTTCATAGTCTTAATT+AGG | - | chr7_2:70329146-70329165 | Msa1073020:intron | 15.0% |
| !! | TTTGTAATTTACATTCTATA+TGG | + | chr7_2:70329323-70329342 | None:intergenic | 15.0% |
| !! | TAGAATGTAAATTACAAAAT+TGG | - | chr7_2:70329325-70329344 | Msa1073020:intron | 15.0% |
| !!! | TGAATTTTTTAATATTGTCA+TGG | - | chr7_2:70329361-70329380 | Msa1073020:intron | 15.0% |
| !! | AAAAACTAGGAATTTATTTA+GGG | + | chr7_2:70329464-70329483 | None:intergenic | 15.0% |
| !! | CAAAAAAATATGATCTAATT+AGG | + | chr7_2:70329819-70329838 | None:intergenic | 15.0% |
| !!! | CTAATTAGATCATATTTTTT+TGG | - | chr7_2:70329817-70329836 | Msa1073020:intron | 15.0% |
| !! | AAAACATTTCTTAGAAATTT+GGG | - | chr7_2:70330027-70330046 | Msa1073020:intron | 15.0% |
| !!! | ATGCAAATAAATAAGCTTTT+AGG | - | chr7_2:70327618-70327637 | Msa1073020:intron | 20.0% |
| !! | TCAAAAAACAAACATTTGTT+TGG | + | chr7_2:70327816-70327835 | None:intergenic | 20.0% |
| !! | AACAATTATTCTATAAGAAC+CGG | + | chr7_2:70327852-70327871 | None:intergenic | 20.0% |
| !! | TAGATAATCAAAATTCTACT+AGG | + | chr7_2:70327979-70327998 | None:intergenic | 20.0% |
| !! | ATGTATATCATAAAAATGCA+TGG | + | chr7_2:70328216-70328235 | None:intergenic | 20.0% |
| !! | ACCAAGAAAATAAATTATCT+AGG | + | chr7_2:70328861-70328880 | None:intergenic | 20.0% |
| !! | TAATTTACATTCTATATGGT+TGG | + | chr7_2:70329319-70329338 | None:intergenic | 20.0% |
| !! | TATGATATACATTGAATTGA+AGG | - | chr7_2:70329408-70329427 | Msa1073020:intron | 20.0% |
| !! | AAAACTAGGAATTTATTTAG+GGG | + | chr7_2:70329463-70329482 | None:intergenic | 20.0% |
| !! | GAAAAACTAGGAATTTATTT+AGG | + | chr7_2:70329465-70329484 | None:intergenic | 20.0% |
| !! | TAATCATAATGATATGTAGT+CGG | - | chr7_2:70329712-70329731 | Msa1073020:intron | 20.0% |
| !! | CAAAACATTTCTTAGAAATT+TGG | - | chr7_2:70330026-70330045 | Msa1073020:intron | 20.0% |
| !! | AAAATACTAATCTTGATTGT+TGG | + | chr7_2:70330053-70330072 | None:intergenic | 20.0% |
| !!! | TAGTATTTTTATGCAACTAT+TGG | - | chr7_2:70330064-70330083 | Msa1073020:intron | 20.0% |
| !!! | AGTATTTTTATGCAACTATT+GGG | - | chr7_2:70330065-70330084 | Msa1073020:intron | 20.0% |
| !! | TATGTTCTTATCACACTTTT+AGG | - | chr7_2:70327462-70327481 | Msa1073020:three_prime_UTR | 25.0% |
| ! | ATATTCATCTATTCTGTCTT+AGG | - | chr7_2:70327551-70327570 | Msa1073020:CDS | 25.0% |
| ! | TATTCATCTATTCTGTCTTA+GGG | - | chr7_2:70327552-70327571 | Msa1073020:CDS | 25.0% |
| ! | AAACAAACATTTGTTTGGTT+TGG | + | chr7_2:70327811-70327830 | None:intergenic | 25.0% |
| !! | TTTTGACGTTGTTTATATTC+CGG | - | chr7_2:70327830-70327849 | Msa1073020:intron | 25.0% |
| ! | AATTTGAATGTTCTTGATTC+AGG | - | chr7_2:70328130-70328149 | Msa1073020:intron | 25.0% |
| ! | ATTTGAATGTTCTTGATTCA+GGG | - | chr7_2:70328131-70328150 | Msa1073020:intron | 25.0% |
| ! | TGGTTTATGATAGAACTTAA+TGG | - | chr7_2:70328291-70328310 | Msa1073020:intron | 25.0% |
| ! | TTAATTCAATTAGTCAGTTG+AGG | - | chr7_2:70328764-70328783 | Msa1073020:intron | 25.0% |
| ! | TAATTCAATTAGTCAGTTGA+GGG | - | chr7_2:70328765-70328784 | Msa1073020:intron | 25.0% |
| ! | AAATTATCTAGGCATCATAT+GGG | + | chr7_2:70328850-70328869 | None:intergenic | 25.0% |
| ! | TAAATTATCTAGGCATCATA+TGG | + | chr7_2:70328851-70328870 | None:intergenic | 25.0% |
| !!! | GCCTAGATAATTTATTTTCT+TGG | - | chr7_2:70328857-70328876 | Msa1073020:intron | 25.0% |
| !! | TTTAAATTGCTGTTGAATGT+TGG | - | chr7_2:70328901-70328920 | Msa1073020:CDS | 25.0% |
| ! | AAAATACATTATACCAATGG+TGG | + | chr7_2:70329022-70329041 | None:intergenic | 25.0% |
| !! | TTTTTAATATTGTCATGGTC+TGG | - | chr7_2:70329366-70329385 | Msa1073020:intron | 25.0% |
| !! | TTTTAATATTGTCATGGTCT+GGG | - | chr7_2:70329367-70329386 | Msa1073020:intron | 25.0% |
| !! | ATATCATACATTTTCAGAAC+TGG | + | chr7_2:70329396-70329415 | None:intergenic | 25.0% |
| ! | TATAAACTTTGTGAAAGAGA+AGG | + | chr7_2:70329497-70329516 | None:intergenic | 25.0% |
| ! | TGTGAATAAATTAGATGTGA+TGG | - | chr7_2:70329738-70329757 | Msa1073020:intron | 25.0% |
| !!! | TTAGATCATATTTTTTTGGC+AGG | - | chr7_2:70329821-70329840 | Msa1073020:intron | 25.0% |
| ! | TATATAAATTACTACAGCAG+GGG | + | chr7_2:70329919-70329938 | None:intergenic | 25.0% |
| ! | GTATATAAATTACTACAGCA+GGG | + | chr7_2:70329920-70329939 | None:intergenic | 25.0% |
| ! | AGTATATAAATTACTACAGC+AGG | + | chr7_2:70329921-70329940 | None:intergenic | 25.0% |
| ! | GCTGTAGTAATTTATATACT+AGG | - | chr7_2:70329921-70329940 | Msa1073020:intron | 25.0% |
| !!! | ACAATCTATATCTTGTTTTG+AGG | - | chr7_2:70330003-70330022 | Msa1073020:intron | 25.0% |
| !!! | GTATTTTTATGCAACTATTG+GGG | - | chr7_2:70330066-70330085 | Msa1073020:intron | 25.0% |
| ! | AATTTAAATAAGCCACAAAC+AGG | + | chr7_2:70330137-70330156 | None:intergenic | 25.0% |
| TTGATTGTTGATCATGACAT+TGG | - | chr7_2:70327519-70327538 | Msa1073020:exon | 30.0% | |
| !! | TTTGTTTGGTTTGGTAACAA+GGG | + | chr7_2:70327802-70327821 | None:intergenic | 30.0% |
| !! | ATTTGTTTGGTTTGGTAACA+AGG | + | chr7_2:70327803-70327822 | None:intergenic | 30.0% |
| !! | GCTTCTAGGATTTCTAAAAT+AGG | - | chr7_2:70328038-70328057 | Msa1073020:intron | 30.0% |
| !! | CAGGGTATTTTTCGATTTTA+TGG | - | chr7_2:70328149-70328168 | Msa1073020:intron | 30.0% |
| GTTCATTTCATTAGACTGAT+TGG | - | chr7_2:70328171-70328190 | Msa1073020:intron | 30.0% | |
| TATGATATACATTCGTGCTT+TGG | - | chr7_2:70328224-70328243 | Msa1073020:intron | 30.0% | |
| AAACTTTCATAATCAGCTTC+AGG | + | chr7_2:70328746-70328765 | None:intergenic | 30.0% | |
| CAACAGCAATTTAAACATGA+AGG | + | chr7_2:70328896-70328915 | None:intergenic | 30.0% | |
| ! | ACAAAGCTAGTCCTTATTTA+TGG | - | chr7_2:70328944-70328963 | Msa1073020:CDS | 30.0% |
| TATCCTTTCCTCCATAAATA+AGG | + | chr7_2:70328958-70328977 | None:intergenic | 30.0% | |
| AAACATTGACATGCAATATC+AGG | + | chr7_2:70328983-70329002 | None:intergenic | 30.0% | |
| TGATATTGCATGTCAATGTT+TGG | - | chr7_2:70328982-70329001 | Msa1073020:intron | 30.0% | |
| GATATTGCATGTCAATGTTT+GGG | - | chr7_2:70328983-70329002 | Msa1073020:intron | 30.0% | |
| !! | ATTTGATTTTACTCCACCAT+TGG | - | chr7_2:70329006-70329025 | Msa1073020:intron | 30.0% |
| TCAACAGTATATAAGTGAGA+AGG | + | chr7_2:70329238-70329257 | None:intergenic | 30.0% | |
| TTCTCACTTATATACTGTTG+AGG | - | chr7_2:70329237-70329256 | Msa1073020:intron | 30.0% | |
| TCTCACTTATATACTGTTGA+GGG | - | chr7_2:70329238-70329257 | Msa1073020:intron | 30.0% | |
| TACAAAATGTTGTCCAATTG+CGG | - | chr7_2:70329613-70329632 | Msa1073020:intron | 30.0% | |
| TATGGAGATGACGATATATT+GGG | - | chr7_2:70329853-70329872 | Msa1073020:intron | 30.0% | |
| ATGATTGATGTCAAAGTCAT+TGG | - | chr7_2:70329884-70329903 | Msa1073020:intron | 30.0% | |
| TAAATTTAAATGCATGCCTC+TGG | - | chr7_2:70330151-70330170 | Msa1073020:CDS | 30.0% | |
| ! | AAAACCTTGGAGATTTTCTC+CGG | + | chr7_2:70327325-70327344 | None:intergenic | 35.0% |
| AGAGGAGAATGAAAAAACCT+TGG | + | chr7_2:70327338-70327357 | None:intergenic | 35.0% | |
| !! | ATGGGTATGAATGGATTAAG+AGG | + | chr7_2:70327356-70327375 | None:intergenic | 35.0% |
| AAGAAAAACGAAGACCCAAA+AGG | + | chr7_2:70327389-70327408 | None:intergenic | 35.0% | |
| ! | CAATTGAATTTTACACCGCA+AGG | - | chr7_2:70327916-70327935 | Msa1073020:intron | 35.0% |
| !! | CCTTAATTTGTTCTACCTTG+CGG | + | chr7_2:70327934-70327953 | None:intergenic | 35.0% |
| CGCAAGGTAGAACAAATTAA+GGG | - | chr7_2:70327932-70327951 | Msa1073020:intron | 35.0% | |
| AAGGTAGAACAAATTAAGGG+TGG | - | chr7_2:70327935-70327954 | Msa1073020:intron | 35.0% | |
| GAAAAGGTTTACTAGGAACT+AGG | + | chr7_2:70328008-70328027 | None:intergenic | 35.0% | |
| AGCTCAAGAAAAGGTTTACT+AGG | + | chr7_2:70328015-70328034 | None:intergenic | 35.0% | |
| AGAAGCAAAAGCTCAAGAAA+AGG | + | chr7_2:70328024-70328043 | None:intergenic | 35.0% | |
| ! | TTTCTTGAGCTTTTGCTTCT+AGG | - | chr7_2:70328024-70328043 | Msa1073020:intron | 35.0% |
| GAAAGATCTAGAGATAGAGT+TGG | - | chr7_2:70328259-70328278 | Msa1073020:intron | 35.0% | |
| GATAGAGTTGGATCGAAATA+TGG | - | chr7_2:70328271-70328290 | Msa1073020:intron | 35.0% | |
| !! | TTGTTGCTTTAGCTGAATTC+TGG | - | chr7_2:70328413-70328432 | Msa1073020:intron | 35.0% |
| ACTGTTCTGTTACCTGAATA+CGG | - | chr7_2:70328512-70328531 | Msa1073020:intron | 35.0% | |
| CTTAATCATGACTGATCTGA+TGG | - | chr7_2:70328619-70328638 | Msa1073020:intron | 35.0% | |
| CTTCAGGACTATTACTCAAA+CGG | + | chr7_2:70328730-70328749 | None:intergenic | 35.0% | |
| AGTGATTGCAAGCGTAATAT+AGG | + | chr7_2:70328791-70328810 | None:intergenic | 35.0% | |
| ! | AAGCTAGTCCTTATTTATGG+AGG | - | chr7_2:70328947-70328966 | Msa1073020:CDS | 35.0% |
| ! | AGTCCTTATTTATGGAGGAA+AGG | - | chr7_2:70328952-70328971 | Msa1073020:CDS | 35.0% |
| AGGATTGCACAAGAAAAACT+AGG | + | chr7_2:70329477-70329496 | None:intergenic | 35.0% | |
| TTGCAGAACGTAGAAAATAG+TGG | + | chr7_2:70329674-70329693 | None:intergenic | 35.0% | |
| TTTGGCAGGTATTATCTGTA+TGG | - | chr7_2:70329835-70329854 | Msa1073020:intron | 35.0% | |
| GTATGGAGATGACGATATAT+TGG | - | chr7_2:70329852-70329871 | Msa1073020:intron | 35.0% | |
| ATTGATGTCAAAGTCATTGG+CGG | - | chr7_2:70329887-70329906 | Msa1073020:intron | 35.0% | |
| !!! | TTGGGGAAACCTTTTTTTGA+AGG | - | chr7_2:70330083-70330102 | Msa1073020:intron | 35.0% |
| GAATGTAATAAGGTACGTTG+CGG | + | chr7_2:70330109-70330128 | None:intergenic | 35.0% | |
| ACAGGCTATGGAATGTAATA+AGG | + | chr7_2:70330119-70330138 | None:intergenic | 35.0% | |
| !! | TGCCTCTGGTTTAGTTATTT+TGG | - | chr7_2:70330165-70330184 | Msa1073020:CDS | 35.0% |
| GTCCAAAATAACTAAACCAG+AGG | + | chr7_2:70330170-70330189 | None:intergenic | 35.0% | |
| CGTTTGCTCCAATTTCGAAA+TGG | - | chr7_2:70327216-70327235 | Msa1073020:three_prime_UTR | 40.0% | |
| CAATCTTCTCAACCAGAACA+CGG | + | chr7_2:70327267-70327286 | None:intergenic | 40.0% | |
| !!! | ATTCCAGCGTTGGTTTTTGA+TGG | + | chr7_2:70327295-70327314 | None:intergenic | 40.0% |
| ! | CAACGCTGGAATTTTGTTAC+CGG | - | chr7_2:70327303-70327322 | Msa1073020:three_prime_UTR | 40.0% |
| GGAGATGAAATGGGTATGAA+TGG | + | chr7_2:70327365-70327384 | None:intergenic | 40.0% | |
| CCAAAAGGTGGAGATGAAAT+GGG | + | chr7_2:70327374-70327393 | None:intergenic | 40.0% | |
| ! | CCATTTCATCTCCACCTTTT+GGG | - | chr7_2:70327372-70327391 | Msa1073020:three_prime_UTR | 40.0% |
| AAAAACGAAGACCCAAAAGG+TGG | + | chr7_2:70327386-70327405 | None:intergenic | 40.0% | |
| ! | ATTCTGTCTTAGGGCTTGTT+TGG | - | chr7_2:70327561-70327580 | Msa1073020:CDS | 40.0% |
| AGTAAAAGACCAATCCAGAC+AGG | - | chr7_2:70327776-70327795 | Msa1073020:intron | 40.0% | |
| CCGCAAGGTAGAACAAATTA+AGG | - | chr7_2:70327931-70327950 | Msa1073020:intron | 40.0% | |
| !! | ATAGTCTTATCCCGCTAAGT+GGG | + | chr7_2:70328341-70328360 | None:intergenic | 40.0% |
| !! | AATAGTCTTATCCCGCTAAG+TGG | + | chr7_2:70328342-70328361 | None:intergenic | 40.0% |
| TCTGGAAAAGTTGTTGCTGT+TGG | - | chr7_2:70328431-70328450 | Msa1073020:intron | 40.0% | |
| ! | GACCTTTTATGCGTCATTTG+CGG | + | chr7_2:70328698-70328717 | None:intergenic | 40.0% |
| ATTTATTTAGGGGCCAAGAG+AGG | + | chr7_2:70329453-70329472 | None:intergenic | 40.0% | |
| AACAAACCGCTATTGTTCTG+CGG | - | chr7_2:70329581-70329600 | Msa1073020:intron | 40.0% | |
| AACATACCGCAGAACAATAG+CGG | + | chr7_2:70329590-70329609 | None:intergenic | 40.0% | |
| TACATTCCATAGCCTGTTTG+TGG | - | chr7_2:70330122-70330141 | Msa1073020:CDS | 40.0% | |
| AATAAGCCACAAACAGGCTA+TGG | + | chr7_2:70330131-70330150 | None:intergenic | 40.0% | |
| TCGCTTCGCCATTTCGAAAT+TGG | + | chr7_2:70327227-70327246 | None:intergenic | 45.0% | |
| TCCATTGTTCAACCGTGTTC+TGG | - | chr7_2:70327252-70327271 | Msa1073020:three_prime_UTR | 45.0% | |
| ACCAGAACACGGTTGAACAA+TGG | + | chr7_2:70327256-70327275 | None:intergenic | 45.0% | |
| CGGTAACAAAATTCCAGCGT+TGG | + | chr7_2:70327305-70327324 | None:intergenic | 45.0% | |
| GTTACCGGAGAAAATCTCCA+AGG | - | chr7_2:70327318-70327337 | Msa1073020:three_prime_UTR | 45.0% | |
| ! | CCCATTTCATCTCCACCTTT+TGG | - | chr7_2:70327371-70327390 | Msa1073020:three_prime_UTR | 45.0% |
| CCCAAAAGGTGGAGATGAAA+TGG | + | chr7_2:70327375-70327394 | None:intergenic | 45.0% | |
| ACTCCTTCCTGTTGCTGTAA+AGG | - | chr7_2:70328481-70328500 | Msa1073020:intron | 45.0% | |
| CTTCCTTTACAGCAACAGGA+AGG | + | chr7_2:70328487-70328506 | None:intergenic | 45.0% | |
| CTTCCTGTTGCTGTAAAGGA+AGG | - | chr7_2:70328485-70328504 | Msa1073020:intron | 45.0% | |
| TCACCTTCCTTTACAGCAAC+AGG | + | chr7_2:70328491-70328510 | None:intergenic | 45.0% | |
| GTTCTGTTACCTGAATACGG+AGG | - | chr7_2:70328515-70328534 | Msa1073020:intron | 45.0% | |
| ! | CATGACTGATCTGATGGACA+CGG | - | chr7_2:70328625-70328644 | Msa1073020:intron | 45.0% |
| AGCCGCAAATGACGCATAAA+AGG | - | chr7_2:70328693-70328712 | Msa1073020:intron | 45.0% | |
| AGACATGAAGCTCTGCATCA+AGG | + | chr7_2:70329081-70329100 | None:intergenic | 45.0% | |
| ! | AGCTTCATGTCTGAAGCTGA+GGG | - | chr7_2:70329089-70329108 | Msa1073020:intron | 45.0% |
| GCTATAGCACTGTAGCATAG+CGG | - | chr7_2:70329552-70329571 | Msa1073020:intron | 45.0% | |
| TCCAATTGCGGCTATAGCAT+TGG | - | chr7_2:70329625-70329644 | Msa1073020:intron | 45.0% | |
| TCCAATGCTATAGCCGCAAT+TGG | + | chr7_2:70329629-70329648 | None:intergenic | 45.0% | |
| ! | GCTATAGCATTGGAGCATAG+CGG | - | chr7_2:70329635-70329654 | Msa1073020:intron | 45.0% |
| !! | GTCAAAGTCATTGGCGGATT+TGG | - | chr7_2:70329893-70329912 | Msa1073020:intron | 45.0% |
| ACGTTGCGGCCTTCAAAAAA+AGG | + | chr7_2:70330095-70330114 | None:intergenic | 45.0% | |
| GAGCAAACGACAGCAACACA+AGG | + | chr7_2:70327205-70327224 | None:intergenic | 50.0% | |
| !!! | CCAGCGTTGGTTTTTGATGG+AGG | + | chr7_2:70327292-70327311 | None:intergenic | 50.0% |
| CCTCCATCAAAAACCAACGC+TGG | - | chr7_2:70327289-70327308 | Msa1073020:three_prime_UTR | 50.0% | |
| TAACAAGGGCCTGTCTGGAT+TGG | + | chr7_2:70327788-70327807 | None:intergenic | 50.0% | |
| ! | TTTGGTAACAAGGGCCTGTC+TGG | + | chr7_2:70327793-70327812 | None:intergenic | 50.0% |
| ATGTAGCCGATCCCACTTAG+CGG | - | chr7_2:70328327-70328346 | Msa1073020:intron | 50.0% | |
| CTTATCCCGCTAAGTGGGAT+CGG | + | chr7_2:70328336-70328355 | None:intergenic | 50.0% | |
| ! | AAAGTTGTTGCTGTTGGCCC+TGG | - | chr7_2:70328437-70328456 | Msa1073020:intron | 50.0% |
| ACCTGAATACGGAGGAGTTG+AGG | - | chr7_2:70328523-70328542 | Msa1073020:intron | 50.0% | |
| ACCTCAACTCCTCCGTATTC+AGG | + | chr7_2:70328527-70328546 | None:intergenic | 50.0% | |
| ! | GAGCTTCATGTCTGAAGCTG+AGG | - | chr7_2:70329088-70329107 | Msa1073020:intron | 50.0% |
| CTGCAAGATGCATCCTCTCT+TGG | - | chr7_2:70329437-70329456 | Msa1073020:intron | 50.0% | |
| GCTAAGTGGGATCGGCTACA+TGG | + | chr7_2:70328328-70328347 | None:intergenic | 55.0% | |
| TGTAGCCGATCCCACTTAGC+GGG | - | chr7_2:70328328-70328347 | Msa1073020:intron | 55.0% | |
| CGTCCTTACCATGAACGCCA+GGG | + | chr7_2:70328457-70328476 | None:intergenic | 55.0% | |
| CCTGGCGTTCATGGTAAGGA+CGG | - | chr7_2:70328455-70328474 | Msa1073020:intron | 55.0% | |
| TGGCCCTGGCGTTCATGGTA+AGG | - | chr7_2:70328451-70328470 | Msa1073020:intron | 60.0% | |
| CCGTCCTTACCATGAACGCC+AGG | + | chr7_2:70328458-70328477 | None:intergenic | 60.0% | |
| ! | ATGTCTGAAGCTGAGGGCGC+AGG | - | chr7_2:70329095-70329114 | Msa1073020:intron | 60.0% |
| GCTGTTGGCCCTGGCGTTCA+TGG | - | chr7_2:70328446-70328465 | Msa1073020:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 70327184 | 70330241 | 70327184 | ID=Msa1073020;Name=Msa1073020 |
| chr7_2 | mRNA | 70327184 | 70330241 | 70327184 | ID=Msa1073020-mRNA-1;Parent=Msa1073020;Name=Msa1073020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|1|1|3|350|97 |
| chr7_2 | exon | 70327184 | 70327582 | 70327184 | ID=Msa1073020-mRNA-1:exon:15815;Parent=Msa1073020-mRNA-1 |
| chr7_2 | exon | 70328861 | 70329000 | 70328861 | ID=Msa1073020-mRNA-1:exon:15814;Parent=Msa1073020-mRNA-1 |
| chr7_2 | exon | 70330086 | 70330241 | 70330086 | ID=Msa1073020-mRNA-1:exon:15813;Parent=Msa1073020-mRNA-1 |
| chr7_2 | five_prime_UTR | 70330191 | 70330241 | 70330191 | ID=Msa1073020-mRNA-1:five_prime_utr;Parent=Msa1073020-mRNA-1 |
| chr7_2 | CDS | 70330086 | 70330190 | 70330086 | ID=Msa1073020-mRNA-1:cds;Parent=Msa1073020-mRNA-1 |
| chr7_2 | CDS | 70328861 | 70329000 | 70328861 | ID=Msa1073020-mRNA-1:cds;Parent=Msa1073020-mRNA-1 |
| chr7_2 | CDS | 70327534 | 70327582 | 70327534 | ID=Msa1073020-mRNA-1:cds;Parent=Msa1073020-mRNA-1 |
| chr7_2 | three_prime_UTR | 70327184 | 70327533 | 70327184 | ID=Msa1073020-mRNA-1:three_prime_utr;Parent=Msa1073020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
