AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1122370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122370 MtrunA17_Chr7g0255911 98.969 97 1 0 1 97 1 97 1.53e-63 187
Msa1122370 MtrunA17_Chr3g0139681 74.227 97 25 0 1 97 1 97 3.84e-48 148
Msa1122370 MtrunA17_Chr3g0117191 64.706 85 30 0 1 85 1 85 4.72e-35 115
Msa1122370 MtrunA17_Chr3g0117431 74.359 39 10 0 1 39 1 39 4.18e-15 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1122370 AT1G14980.1 70.103 97 29 0 1 97 1 97 5.30e-47 145
Msa1122370 AT1G23100.1 69.072 97 30 0 1 97 1 97 5.62e-45 140
Msa1122370 AT1G14980.2 70.732 82 24 0 1 82 1 82 8.82e-38 122

Find 46 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCTCTGGTTTAGTTATTT+TGG 0.077085 7_3:+72802406 Msa1122370:three_prime_UTR
CAAAACATTTCTTAGAAATT+TGG 0.080809 7_3:+72802267 Msa1122370:three_prime_UTR
TCGCTTCGCCATTTCGAAAT+TGG 0.172281 7_3:-72799478 None:intergenic
GTCAAAGTCATTGGCGGATT+TGG 0.232289 7_3:+72802134 Msa1122370:three_prime_UTR
TTGTTGCTTTAGCTGAATTC+TGG 0.244257 7_3:+72800666 Msa1122370:intron
AAAACATTTCTTAGAAATTT+GGG 0.271475 7_3:+72802268 Msa1122370:three_prime_UTR
GTATGGAGATGACGATATAT+TGG 0.325927 7_3:+72802093 Msa1122370:CDS
TCCATTGTTCAACCGTGTTC+TGG 0.339609 7_3:+72799506 Msa1122370:CDS
GCTGTTGGCCCTGGCGTTCA+TGG 0.343925 7_3:+72800699 Msa1122370:CDS
TACATTCCATAGCCTGTTTG+TGG 0.344028 7_3:+72802363 Msa1122370:three_prime_UTR
TCACCTTCCTTTACAGCAAC+AGG 0.376842 7_3:-72800741 None:intergenic
AAAATACTAATCTTGATTGT+TGG 0.377725 7_3:-72802291 None:intergenic
ACAGGCTATGGAATGTAATA+AGG 0.379259 7_3:-72802357 None:intergenic
ACCTCAACTCCTCCGTATTC+AGG 0.397560 7_3:-72800777 None:intergenic
TTTGGCAGGTATTATCTGTA+TGG 0.419891 7_3:+72802076 Msa1122370:intron
ACTCCTTCCTGTTGCTGTAA+AGG 0.425958 7_3:+72800734 Msa1122370:CDS
TAAATTTAAATGCATGCCTC+TGG 0.426058 7_3:+72802392 Msa1122370:three_prime_UTR
CGTTTGCTCCAATTTCGAAA+TGG 0.427778 7_3:+72799470 Msa1122370:exon
AATTTAAATAAGCCACAAAC+AGG 0.443958 7_3:-72802375 None:intergenic
AGTATATAAATTACTACAGC+AGG 0.450662 7_3:-72802159 None:intergenic
CCGTCCTTACCATGAACGCC+AGG 0.451462 7_3:-72800708 None:intergenic
TATGGAGATGACGATATATT+GGG 0.451979 7_3:+72802094 Msa1122370:CDS
AATAAGCCACAAACAGGCTA+TGG 0.490821 7_3:-72802369 None:intergenic
TGGCCCTGGCGTTCATGGTA+AGG 0.497703 7_3:+72800704 Msa1122370:CDS
ACTGTTCTGTTACCTGAATA+CGG 0.515420 7_3:+72800765 Msa1122370:CDS
ATGATTGATGTCAAAGTCAT+TGG 0.522903 7_3:+72802125 Msa1122370:exon
AAAGTTGTTGCTGTTGGCCC+TGG 0.524580 7_3:+72800690 Msa1122370:CDS
GCTGTAGTAATTTATATACT+AGG 0.535706 7_3:+72802162 Msa1122370:three_prime_UTR
TCTGGAAAAGTTGTTGCTGT+TGG 0.541060 7_3:+72800684 Msa1122370:CDS
ATTGATGTCAAAGTCATTGG+CGG 0.544417 7_3:+72802128 Msa1122370:exon
CGGTAACAAAATTCCAGCGT+TGG 0.547494 7_3:-72799556 None:intergenic
ACCTGAATACGGAGGAGTTG+AGG 0.577975 7_3:+72800776 Msa1122370:CDS
CTTCCTGTTGCTGTAAAGGA+AGG 0.582243 7_3:+72800738 Msa1122370:CDS
ACCAGAACACGGTTGAACAA+TGG 0.591274 7_3:-72799507 None:intergenic
CCTGGCGTTCATGGTAAGGA+CGG 0.598384 7_3:+72800708 Msa1122370:CDS
GTTACCGGAGAAAATCTCCA+AGG 0.620509 7_3:+72799572 Msa1122370:CDS
GTATATAAATTACTACAGCA+GGG 0.622541 7_3:-72802158 None:intergenic
GTCCAAAATAACTAAACCAG+AGG 0.622937 7_3:-72802408 None:intergenic
CTTCCTTTACAGCAACAGGA+AGG 0.636048 7_3:-72800737 None:intergenic
CAATCTTCTCAACCAGAACA+CGG 0.641660 7_3:-72799518 None:intergenic
GAGCAAACGACAGCAACACA+AGG 0.644728 7_3:-72799456 None:intergenic
ATGGTATGTTTGAACATGCA+TGG 0.648776 7_3:-72802467 None:intergenic
TATATAAATTACTACAGCAG+GGG 0.649865 7_3:-72802157 None:intergenic
CGTCCTTACCATGAACGCCA+GGG 0.657122 7_3:-72800707 None:intergenic
GAATGTAATAAGGTACGTTG+CGG 0.660109 7_3:-72802347 None:intergenic
GTTCTGTTACCTGAATACGG+AGG 0.813129 7_3:+72800768 Msa1122370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAAATCTTAAACATTT+TGG - chr7_3:72800367-72800386 None:intergenic 10.0%
!!! GTTTCTTAGTTTTAATTTAT+TGG + chr7_3:72800900-72800919 Msa1122370:intron 15.0%
!! ATAAAAATACATTATACCAA+TGG - chr7_3:72801278-72801297 None:intergenic 15.0%
!! TAAAAAAAATTGAATAGAGA+TGG - chr7_3:72801380-72801399 None:intergenic 15.0%
!! TTTGTAATTTACATTCTATA+TGG - chr7_3:72801576-72801595 None:intergenic 15.0%
!! TAGAATGTAAATTACAAAAT+TGG + chr7_3:72801578-72801597 Msa1122370:intron 15.0%
!!! TGAATTTTTTAATATTGTCA+TGG + chr7_3:72801614-72801633 Msa1122370:intron 15.0%
!! AAAAACTAGGAATTTATTTA+GGG - chr7_3:72801717-72801736 None:intergenic 15.0%
!! CAAAAAAATATGATCTAATT+AGG - chr7_3:72802060-72802079 None:intergenic 15.0%
!!! CTAATTAGATCATATTTTTT+TGG + chr7_3:72802058-72802077 Msa1122370:intron 15.0%
!! AAAACATTTCTTAGAAATTT+GGG + chr7_3:72802268-72802287 Msa1122370:three_prime_UTR 15.0%
!!! ATGCAAATAAATAAGCTTTT+AGG + chr7_3:72799872-72799891 Msa1122370:intron 20.0%
!! TCAAAAAACAAACATTTGTT+TGG - chr7_3:72800069-72800088 None:intergenic 20.0%
!!! TTTTGATGTTGTTTATATTC+CGG + chr7_3:72800083-72800102 Msa1122370:intron 20.0%
!! TAGATAATCAAAATTCTACT+AGG - chr7_3:72800232-72800251 None:intergenic 20.0%
!! ATGTATATCATAAAAATGCA+TGG - chr7_3:72800469-72800488 None:intergenic 20.0%
!! ACCAAGAAAATAAATTATCT+AGG - chr7_3:72801114-72801133 None:intergenic 20.0%
!! TAATTTACATTCTATATGGT+TGG - chr7_3:72801572-72801591 None:intergenic 20.0%
!! TATGATATACATTGAATTGA+AGG + chr7_3:72801661-72801680 Msa1122370:intron 20.0%
!! AAAACTAGGAATTTATTTAG+GGG - chr7_3:72801716-72801735 None:intergenic 20.0%
!! GAAAAACTAGGAATTTATTT+AGG - chr7_3:72801718-72801737 None:intergenic 20.0%
!!! ACAATCTATATTTTGTTTTG+AGG + chr7_3:72802244-72802263 Msa1122370:three_prime_UTR 20.0%
!! CAAAACATTTCTTAGAAATT+TGG + chr7_3:72802267-72802286 Msa1122370:three_prime_UTR 20.0%
!! AAAATACTAATCTTGATTGT+TGG - chr7_3:72802294-72802313 None:intergenic 20.0%
!!! TAGTATTTTTATGCAACTAT+TGG + chr7_3:72802305-72802324 Msa1122370:three_prime_UTR 20.0%
!!! AGTATTTTTATGCAACTATT+GGG + chr7_3:72802306-72802325 Msa1122370:three_prime_UTR 20.0%
!! TATGTTCTTATCACACTTTT+AGG + chr7_3:72799716-72799735 Msa1122370:intron 25.0%
! ATATTCATCTATTGTGTCTT+AGG + chr7_3:72799805-72799824 Msa1122370:intron 25.0%
! TATTCATCTATTGTGTCTTA+GGG + chr7_3:72799806-72799825 Msa1122370:intron 25.0%
! AAACAAACATTTGTTTGGTT+TGG - chr7_3:72800064-72800083 None:intergenic 25.0%
! AACAAGTATTCTATAAGAAC+CGG - chr7_3:72800105-72800124 None:intergenic 25.0%
! AATTTGAATGTTCTTGATTC+AGG + chr7_3:72800383-72800402 Msa1122370:intron 25.0%
! ATTTGAATGTTCTTGATTCA+GGG + chr7_3:72800384-72800403 Msa1122370:intron 25.0%
! TATGATATACATTTGTGCTT+TGG + chr7_3:72800477-72800496 Msa1122370:intron 25.0%
! TGGTTTATGATAGAACTTAA+TGG + chr7_3:72800544-72800563 Msa1122370:intron 25.0%
! TTAATTCAATTAGTCAGTTG+AGG + chr7_3:72801017-72801036 Msa1122370:intron 25.0%
! TAATTCAATTAGTCAGTTGA+GGG + chr7_3:72801018-72801037 Msa1122370:intron 25.0%
! AAATTATCTAGGCATCATAT+GGG - chr7_3:72801103-72801122 None:intergenic 25.0%
! TAAATTATCTAGGCATCATA+TGG - chr7_3:72801104-72801123 None:intergenic 25.0%
!!! GCCTAGATAATTTATTTTCT+TGG + chr7_3:72801110-72801129 Msa1122370:intron 25.0%
!! TTTAAATTGCTGTTGAATGT+TGG + chr7_3:72801154-72801173 Msa1122370:intron 25.0%
! AAAATACATTATACCAATGG+TGG - chr7_3:72801275-72801294 None:intergenic 25.0%
!! ATAGTTTCATAGTCTTAGTT+AGG + chr7_3:72801399-72801418 Msa1122370:intron 25.0%
!! TTTTTAATATTGTCATGGTC+TGG + chr7_3:72801619-72801638 Msa1122370:intron 25.0%
!! TTTTAATATTGTCATGGTCT+GGG + chr7_3:72801620-72801639 Msa1122370:intron 25.0%
!! ATATCATACATTTTCAGAAC+TGG - chr7_3:72801649-72801668 None:intergenic 25.0%
! TATAAACTTTGTGAAAGAGA+AGG - chr7_3:72801750-72801769 None:intergenic 25.0%
! TACAAAATGTTGTCAAATTG+CGG + chr7_3:72801866-72801885 Msa1122370:intron 25.0%
! TGTGAATAAATTAGATGTGA+TGG + chr7_3:72801979-72801998 Msa1122370:intron 25.0%
!!! TTAGATCATATTTTTTTGGC+AGG + chr7_3:72802062-72802081 Msa1122370:intron 25.0%
! TATATAAATTACTACAGCAG+GGG - chr7_3:72802160-72802179 None:intergenic 25.0%
! GTATATAAATTACTACAGCA+GGG - chr7_3:72802161-72802180 None:intergenic 25.0%
! AGTATATAAATTACTACAGC+AGG - chr7_3:72802162-72802181 None:intergenic 25.0%
! GCTGTAGTAATTTATATACT+AGG + chr7_3:72802162-72802181 Msa1122370:three_prime_UTR 25.0%
!!! GTATTTTTATGCAACTATTG+GGG + chr7_3:72802307-72802326 Msa1122370:three_prime_UTR 25.0%
! AATTTAAATAAGCCACAAAC+AGG - chr7_3:72802378-72802397 None:intergenic 25.0%
TTGATTGTTGATCATGACAT+TGG + chr7_3:72799773-72799792 Msa1122370:intron 30.0%
!! TTTGTTTGGTTTGGTAACAA+GGG - chr7_3:72800055-72800074 None:intergenic 30.0%
!! ATTTGTTTGGTTTGGTAACA+AGG - chr7_3:72800056-72800075 None:intergenic 30.0%
!! GCTTCTAGGATTTCTAAAAT+AGG + chr7_3:72800291-72800310 Msa1122370:intron 30.0%
!! CAGGGTATTTTTCGATTTTA+TGG + chr7_3:72800402-72800421 Msa1122370:intron 30.0%
GTTCATTTCATTAGACTGAT+TGG + chr7_3:72800424-72800443 Msa1122370:intron 30.0%
AAACTTTCATAATCAGCTTC+AGG - chr7_3:72800999-72801018 None:intergenic 30.0%
CAACAGCAATTTAAACATGA+AGG - chr7_3:72801149-72801168 None:intergenic 30.0%
! ACAAAGCTAGTCCTTATTTA+TGG + chr7_3:72801197-72801216 Msa1122370:intron 30.0%
TATCCTTTCCTCCATAAATA+AGG - chr7_3:72801211-72801230 None:intergenic 30.0%
AAACATTGACATGCAATATC+AGG - chr7_3:72801236-72801255 None:intergenic 30.0%
TGATATTGCATGTCAATGTT+TGG + chr7_3:72801235-72801254 Msa1122370:intron 30.0%
GATATTGCATGTCAATGTTT+GGG + chr7_3:72801236-72801255 Msa1122370:intron 30.0%
!! ATTTGATTTTACTCCACCAT+TGG + chr7_3:72801259-72801278 Msa1122370:intron 30.0%
TCAACAGTATATAAGTGAGA+AGG - chr7_3:72801491-72801510 None:intergenic 30.0%
TTCTCACTTATATACTGTTG+AGG + chr7_3:72801490-72801509 Msa1122370:intron 30.0%
TCTCACTTATATACTGTTGA+GGG + chr7_3:72801491-72801510 Msa1122370:intron 30.0%
TATGGAGATGACGATATATT+GGG + chr7_3:72802094-72802113 Msa1122370:CDS 30.0%
ATGATTGATGTCAAAGTCAT+TGG + chr7_3:72802125-72802144 Msa1122370:exon 30.0%
TAAATTTAAATGCATGCCTC+TGG + chr7_3:72802392-72802411 Msa1122370:three_prime_UTR 30.0%
! AAAACCTTGGAGATTTTCTC+CGG - chr7_3:72799579-72799598 None:intergenic 35.0%
AGAGGAGAATGAAAAAACCT+TGG - chr7_3:72799592-72799611 None:intergenic 35.0%
!! ATGGGTATGAATGGATTAAG+AGG - chr7_3:72799610-72799629 None:intergenic 35.0%
AAGAAAAACGAAGACCCAAA+AGG - chr7_3:72799643-72799662 None:intergenic 35.0%
! CAATTGAATTTTACACCGCA+AGG + chr7_3:72800169-72800188 Msa1122370:intron 35.0%
!! CCTTAATTTGTTCTACCTTG+CGG - chr7_3:72800187-72800206 None:intergenic 35.0%
CGCAAGGTAGAACAAATTAA+GGG + chr7_3:72800185-72800204 Msa1122370:intron 35.0%
AAGGTAGAACAAATTAAGGG+TGG + chr7_3:72800188-72800207 Msa1122370:intron 35.0%
GAAAAGGTTTACTAGGAACT+AGG - chr7_3:72800261-72800280 None:intergenic 35.0%
AGCTCAAGAAAAGGTTTACT+AGG - chr7_3:72800268-72800287 None:intergenic 35.0%
AGAAGCAAAAGCTCAAGAAA+AGG - chr7_3:72800277-72800296 None:intergenic 35.0%
! TTTCTTGAGCTTTTGCTTCT+AGG + chr7_3:72800277-72800296 Msa1122370:intron 35.0%
GAAAGATCTAGAGATAGAGT+TGG + chr7_3:72800512-72800531 Msa1122370:intron 35.0%
GATAGAGTTGGATCGAAATA+TGG + chr7_3:72800524-72800543 Msa1122370:intron 35.0%
!! TTGTTGCTTTAGCTGAATTC+TGG + chr7_3:72800666-72800685 Msa1122370:intron 35.0%
ACTGTTCTGTTACCTGAATA+CGG + chr7_3:72800765-72800784 Msa1122370:CDS 35.0%
CTTAATCATGACTGATCTGA+TGG + chr7_3:72800872-72800891 Msa1122370:intron 35.0%
CTTCAGGACTATTACTCAAA+CGG - chr7_3:72800983-72801002 None:intergenic 35.0%
AGTGATTGCAAGCGTAATAT+AGG - chr7_3:72801044-72801063 None:intergenic 35.0%
! AAGCTAGTCCTTATTTATGG+AGG + chr7_3:72801200-72801219 Msa1122370:intron 35.0%
! AGTCCTTATTTATGGAGGAA+AGG + chr7_3:72801205-72801224 Msa1122370:intron 35.0%
AGGATTGCACAAGAAAAACT+AGG - chr7_3:72801730-72801749 None:intergenic 35.0%
TTGCAGAACGTAGAAAATAG+TGG - chr7_3:72801927-72801946 None:intergenic 35.0%
TTTGGCAGGTATTATCTGTA+TGG + chr7_3:72802076-72802095 Msa1122370:intron 35.0%
GTATGGAGATGACGATATAT+TGG + chr7_3:72802093-72802112 Msa1122370:CDS 35.0%
ATTGATGTCAAAGTCATTGG+CGG + chr7_3:72802128-72802147 Msa1122370:exon 35.0%
!!! TTGGGGAAACCTTTTTTTGA+AGG + chr7_3:72802324-72802343 Msa1122370:three_prime_UTR 35.0%
GAATGTAATAAGGTACGTTG+CGG - chr7_3:72802350-72802369 None:intergenic 35.0%
ACAGGCTATGGAATGTAATA+AGG - chr7_3:72802360-72802379 None:intergenic 35.0%
!! TGCCTCTGGTTTAGTTATTT+TGG + chr7_3:72802406-72802425 Msa1122370:three_prime_UTR 35.0%
GTCCAAAATAACTAAACCAG+AGG - chr7_3:72802411-72802430 None:intergenic 35.0%
CGTTTGCTCCAATTTCGAAA+TGG + chr7_3:72799470-72799489 Msa1122370:exon 40.0%
CAATCTTCTCAACCAGAACA+CGG - chr7_3:72799521-72799540 None:intergenic 40.0%
!!! ATTCCAGCGTTGGTTTTTGA+TGG - chr7_3:72799549-72799568 None:intergenic 40.0%
! CAACGCTGGAATTTTGTTAC+CGG + chr7_3:72799557-72799576 Msa1122370:CDS 40.0%
GGAGATGAAATGGGTATGAA+TGG - chr7_3:72799619-72799638 None:intergenic 40.0%
CCAAAAGGTGGAGATGAAAT+GGG - chr7_3:72799628-72799647 None:intergenic 40.0%
! CCATTTCATCTCCACCTTTT+GGG + chr7_3:72799626-72799645 Msa1122370:intron 40.0%
AAAAACGAAGACCCAAAAGG+TGG - chr7_3:72799640-72799659 None:intergenic 40.0%
! ATTGTGTCTTAGGGCTTGTT+TGG + chr7_3:72799815-72799834 Msa1122370:intron 40.0%
AGTAAAAGACCAATCCAGAC+AGG + chr7_3:72800029-72800048 Msa1122370:intron 40.0%
CCGCAAGGTAGAACAAATTA+AGG + chr7_3:72800184-72800203 Msa1122370:intron 40.0%
!! ATAGTCTTATCCCGCTAAGT+GGG - chr7_3:72800594-72800613 None:intergenic 40.0%
!! AATAGTCTTATCCCGCTAAG+TGG - chr7_3:72800595-72800614 None:intergenic 40.0%
TCTGGAAAAGTTGTTGCTGT+TGG + chr7_3:72800684-72800703 Msa1122370:CDS 40.0%
! GACCTTTTATGCGTCATTTG+CGG - chr7_3:72800951-72800970 None:intergenic 40.0%
ATTTATTTAGGGGCCAAGAG+AGG - chr7_3:72801706-72801725 None:intergenic 40.0%
GCTATAGCACTATAGCATAG+CGG + chr7_3:72801805-72801824 Msa1122370:intron 40.0%
AACAAACCGCTATTGTTCTG+CGG + chr7_3:72801834-72801853 Msa1122370:intron 40.0%
AACATACCGCAGAACAATAG+CGG - chr7_3:72801843-72801862 None:intergenic 40.0%
TCAAATTGCGGCTATAGCAT+TGG + chr7_3:72801878-72801897 Msa1122370:intron 40.0%
TACATTCCATAGCCTGTTTG+TGG + chr7_3:72802363-72802382 Msa1122370:three_prime_UTR 40.0%
AATAAGCCACAAACAGGCTA+TGG - chr7_3:72802372-72802391 None:intergenic 40.0%
TCGCTTCGCCATTTCGAAAT+TGG - chr7_3:72799481-72799500 None:intergenic 45.0%
TCCATTGTTCAACCGTGTTC+TGG + chr7_3:72799506-72799525 Msa1122370:CDS 45.0%
ACCAGAACACGGTTGAACAA+TGG - chr7_3:72799510-72799529 None:intergenic 45.0%
CGGTAACAAAATTCCAGCGT+TGG - chr7_3:72799559-72799578 None:intergenic 45.0%
GTTACCGGAGAAAATCTCCA+AGG + chr7_3:72799572-72799591 Msa1122370:CDS 45.0%
! CCCATTTCATCTCCACCTTT+TGG + chr7_3:72799625-72799644 Msa1122370:intron 45.0%
CCCAAAAGGTGGAGATGAAA+TGG - chr7_3:72799629-72799648 None:intergenic 45.0%
ACTCCTTCCTGTTGCTGTAA+AGG + chr7_3:72800734-72800753 Msa1122370:CDS 45.0%
CTTCCTTTACAGCAACAGGA+AGG - chr7_3:72800740-72800759 None:intergenic 45.0%
CTTCCTGTTGCTGTAAAGGA+AGG + chr7_3:72800738-72800757 Msa1122370:CDS 45.0%
TCACCTTCCTTTACAGCAAC+AGG - chr7_3:72800744-72800763 None:intergenic 45.0%
GTTCTGTTACCTGAATACGG+AGG + chr7_3:72800768-72800787 Msa1122370:CDS 45.0%
! CATGACTGATCTGATGGACA+TGG + chr7_3:72800878-72800897 Msa1122370:intron 45.0%
AGCCGCAAATGACGCATAAA+AGG + chr7_3:72800946-72800965 Msa1122370:intron 45.0%
AGACATGAAGCTCTGCATCA+AGG - chr7_3:72801334-72801353 None:intergenic 45.0%
! AGCTTCATGTCTGAAGCTGA+GGG + chr7_3:72801342-72801361 Msa1122370:intron 45.0%
! GCTATAGCATTGGAGCATAG+CGG + chr7_3:72801888-72801907 Msa1122370:intron 45.0%
!! GTCAAAGTCATTGGCGGATT+TGG + chr7_3:72802134-72802153 Msa1122370:three_prime_UTR 45.0%
ACGTTGCGGCCTTCAAAAAA+AGG - chr7_3:72802336-72802355 None:intergenic 45.0%
GAGCAAACGACAGCAACACA+AGG - chr7_3:72799459-72799478 None:intergenic 50.0%
!!! CCAGCGTTGGTTTTTGATGG+AGG - chr7_3:72799546-72799565 None:intergenic 50.0%
CCTCCATCAAAAACCAACGC+TGG + chr7_3:72799543-72799562 Msa1122370:CDS 50.0%
TAACAAGGGCCTGTCTGGAT+TGG - chr7_3:72800041-72800060 None:intergenic 50.0%
! TTTGGTAACAAGGGCCTGTC+TGG - chr7_3:72800046-72800065 None:intergenic 50.0%
ATGTAGCCGATCCCACTTAG+CGG + chr7_3:72800580-72800599 Msa1122370:intron 50.0%
CTTATCCCGCTAAGTGGGAT+CGG - chr7_3:72800589-72800608 None:intergenic 50.0%
! AAAGTTGTTGCTGTTGGCCC+TGG + chr7_3:72800690-72800709 Msa1122370:CDS 50.0%
ACCTGAATACGGAGGAGTTG+AGG + chr7_3:72800776-72800795 Msa1122370:CDS 50.0%
ACCTCAACTCCTCCGTATTC+AGG - chr7_3:72800780-72800799 None:intergenic 50.0%
! GAGCTTCATGTCTGAAGCTG+AGG + chr7_3:72801341-72801360 Msa1122370:intron 50.0%
CTGCAAGATGCATCCTCTCT+TGG + chr7_3:72801690-72801709 Msa1122370:intron 50.0%
GCTAAGTGGGATCGGCTACA+TGG - chr7_3:72800581-72800600 None:intergenic 55.0%
TGTAGCCGATCCCACTTAGC+GGG + chr7_3:72800581-72800600 Msa1122370:intron 55.0%
CGTCCTTACCATGAACGCCA+GGG - chr7_3:72800710-72800729 None:intergenic 55.0%
CCTGGCGTTCATGGTAAGGA+CGG + chr7_3:72800708-72800727 Msa1122370:CDS 55.0%
TGGCCCTGGCGTTCATGGTA+AGG + chr7_3:72800704-72800723 Msa1122370:CDS 60.0%
CCGTCCTTACCATGAACGCC+AGG - chr7_3:72800711-72800730 None:intergenic 60.0%
! ATGTCTGAAGCTGAGGGCGC+AGG + chr7_3:72801348-72801367 Msa1122370:intron 60.0%
GCTGTTGGCCCTGGCGTTCA+TGG + chr7_3:72800699-72800718 Msa1122370:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 72799438 72802482 72799438 ID=Msa1122370;Name=Msa1122370
chr7_3 mRNA 72799438 72802482 72799438 ID=Msa1122370-mRNA-1;Parent=Msa1122370;Name=Msa1122370-mRNA-1;_AED=0.01;_eAED=0.01;_QI=51|1|1|1|1|1|3|350|97
chr7_3 exon 72799438 72799593 72799438 ID=Msa1122370-mRNA-1:exon:18970;Parent=Msa1122370-mRNA-1
chr7_3 exon 72800678 72800817 72800678 ID=Msa1122370-mRNA-1:exon:18971;Parent=Msa1122370-mRNA-1
chr7_3 exon 72802084 72802482 72802084 ID=Msa1122370-mRNA-1:exon:18972;Parent=Msa1122370-mRNA-1
chr7_3 five_prime_UTR 72799438 72799488 72799438 ID=Msa1122370-mRNA-1:five_prime_utr;Parent=Msa1122370-mRNA-1
chr7_3 CDS 72799489 72799593 72799489 ID=Msa1122370-mRNA-1:cds;Parent=Msa1122370-mRNA-1
chr7_3 CDS 72800678 72800817 72800678 ID=Msa1122370-mRNA-1:cds;Parent=Msa1122370-mRNA-1
chr7_3 CDS 72802084 72802132 72802084 ID=Msa1122370-mRNA-1:cds;Parent=Msa1122370-mRNA-1
chr7_3 three_prime_UTR 72802133 72802482 72802133 ID=Msa1122370-mRNA-1:three_prime_utr;Parent=Msa1122370-mRNA-1
Gene Sequence

>Msa1122370

ATGGCGAAGCGATTGATTCCATTGTTCAACCGTGTTCTGGTTGAGAAGATTGTTCCTCCATCAAAAACCAACGCTGGAATTTTGTTACCGGAGAAAATCTCCAAGCTGAATTCTGGAAAAGTTGTTGCTGTTGGCCCTGGCGTTCATGGTAAGGACGGCAAACTCCTTCCTGTTGCTGTAAAGGAAGGTGACACTGTTCTGTTACCTGAATACGGAGGAGTTGAGGTGAAGCTTGATCACAAAGAGTATTATCTGTATGGAGATGACGATATATTGGGAACACTGCATGATTGA
Protein sequence

>Msa1122370

MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKISKLNSGKVVAVGPGVHGKDGKLLPVAVKEGDTVLLPEYGGVEVKLDHKEYYLYGDDDILGTLHD*