Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073160 | XP_003624978.2 | 94.162 | 394 | 22 | 1 | 1 | 393 | 1 | 394 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073160 | sp|Q6NLB1|FB118_ARATH | 55.493 | 355 | 144 | 5 | 45 | 393 | 25 | 371 | 2.28e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073160 | Q2HSY4 | 94.162 | 394 | 22 | 1 | 1 | 393 | 1 | 394 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0378340 | Msa1073160 | 0.813841 | 2.086270e-51 | -8.615850e-47 |
| Msa0427690 | Msa1073160 | 0.816134 | 6.467549e-52 | -8.615850e-47 |
| Msa1073160 | Msa1382720 | 0.814579 | 1.433823e-51 | -8.615850e-47 |
| Msa1073160 | Msa1424090 | 0.996133 | 8.634781e-224 | -8.615850e-47 |
| Msa0518520 | Msa1073160 | 0.812882 | 3.390123e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073160 | MtrunA17_Chr7g0256121 | 94.162 | 394 | 22 | 1 | 1 | 393 | 1 | 394 | 0.0 | 736 |
| Msa1073160 | MtrunA17_Chr5g0441461 | 53.388 | 369 | 157 | 4 | 39 | 393 | 32 | 399 | 2.27e-141 | 408 |
| Msa1073160 | MtrunA17_Chr3g0094081 | 57.738 | 336 | 133 | 4 | 66 | 393 | 41 | 375 | 2.91e-139 | 402 |
| Msa1073160 | MtrunA17_Chr7g0256131 | 43.831 | 308 | 160 | 5 | 82 | 386 | 9 | 306 | 4.26e-85 | 261 |
| Msa1073160 | MtrunA17_Chr7g0256161 | 44.785 | 326 | 144 | 8 | 88 | 386 | 11 | 327 | 5.92e-83 | 256 |
| Msa1073160 | MtrunA17_Chr7g0256061 | 86.620 | 142 | 18 | 1 | 1 | 141 | 1 | 142 | 2.76e-68 | 212 |
| Msa1073160 | MtrunA17_Chr7g0256141 | 38.182 | 330 | 180 | 10 | 66 | 391 | 2 | 311 | 1.08e-58 | 193 |
| Msa1073160 | MtrunA17_Chr6g0465451 | 38.658 | 313 | 172 | 7 | 86 | 391 | 18 | 317 | 2.86e-56 | 187 |
| Msa1073160 | MtrunA17_Chr7g0256151 | 39.781 | 274 | 149 | 7 | 66 | 334 | 1 | 263 | 1.17e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1073160 | AT2G26850.1 | 55.493 | 355 | 144 | 5 | 45 | 393 | 25 | 371 | 2.32e-142 | 410 |
| Msa1073160 | AT2G32560.1 | 49.875 | 399 | 165 | 6 | 1 | 393 | 2 | 371 | 3.53e-136 | 394 |
| Msa1073160 | AT2G41170.1 | 49.858 | 351 | 165 | 4 | 52 | 393 | 23 | 371 | 7.99e-114 | 337 |
| Msa1073160 | AT2G41170.2 | 45.573 | 384 | 165 | 5 | 52 | 393 | 23 | 404 | 4.01e-107 | 321 |
| Msa1073160 | AT2G32560.2 | 51.546 | 291 | 128 | 3 | 45 | 329 | 25 | 308 | 2.46e-105 | 314 |
| Msa1073160 | AT2G26850.2 | 52.985 | 268 | 112 | 5 | 45 | 306 | 25 | 284 | 4.01e-92 | 279 |
| Msa1073160 | AT2G41170.3 | 53.361 | 238 | 98 | 3 | 81 | 307 | 51 | 286 | 4.04e-76 | 238 |
Find 87 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGGTGTTATTTGATATT+AGG | 0.186799 | 7_2:+70613258 | None:intergenic |
| CAACTGAGGAAAACATAAAA+TGG | 0.213796 | 7_2:-70611915 | Msa1073160:CDS |
| ACAATACTTGCTTTCCTTCA+TGG | 0.246700 | 7_2:-70612703 | Msa1073160:CDS |
| TGAATTCTTCTCTATGCTTT+TGG | 0.274166 | 7_2:+70612747 | None:intergenic |
| GATGTAGAAGTGATTATTTA+TGG | 0.288645 | 7_2:-70612846 | Msa1073160:CDS |
| GGTGACAGATCCAGTGATTT+TGG | 0.292587 | 7_2:-70611308 | Msa1073160:intron |
| TGAGAGTGGTTTATTTATAA+AGG | 0.303379 | 7_2:+70613158 | None:intergenic |
| CACAAGTGTGCAAATCTCTT+AGG | 0.319042 | 7_2:-70612873 | Msa1073160:CDS |
| AATAAACCACTCTCATCAAT+TGG | 0.322959 | 7_2:-70613150 | Msa1073160:CDS |
| CAAAGGAGACAAAAGATATA+AGG | 0.353602 | 7_2:+70613199 | None:intergenic |
| TGTACCACTATATAAGCAAT+AGG | 0.354652 | 7_2:-70610921 | Msa1073160:three_prime_UTR |
| GCAATTACAAAACAAGAGTT+TGG | 0.359351 | 7_2:-70613013 | Msa1073160:CDS |
| ATTCTTGCATGGACATAGTT+AGG | 0.362365 | 7_2:+70611004 | None:intergenic |
| TACACACACATTTCTTCTCT+TGG | 0.364530 | 7_2:-70613478 | Msa1073160:five_prime_UTR |
| GTATAGTGTCATTGGTCATT+TGG | 0.367045 | 7_2:-70611476 | Msa1073160:CDS |
| CTTTATCTTTCTCTTGAGAA+TGG | 0.369439 | 7_2:-70612604 | Msa1073160:CDS |
| CATTGCCAATGTCACAATAA+AGG | 0.376211 | 7_2:-70611430 | Msa1073160:intron |
| GAACAAGGAAATGAAATAGA+AGG | 0.401759 | 7_2:-70611220 | Msa1073160:CDS |
| ATGTAGAAGTGATTATTTAT+GGG | 0.401802 | 7_2:-70612845 | Msa1073160:CDS |
| TTACCTCACGGTTATAAACT+TGG | 0.402760 | 7_2:+70612563 | None:intergenic |
| AGAAACAATGAGTTCCCTTA+TGG | 0.417625 | 7_2:-70611787 | Msa1073160:intron |
| GGAGAGGATTATATATCAAA+AGG | 0.419136 | 7_2:+70613240 | None:intergenic |
| TATAATTGGAAAATTTACTT+TGG | 0.419645 | 7_2:-70610970 | Msa1073160:three_prime_UTR |
| ATGTGAATGTAAAGGCATAA+AGG | 0.422726 | 7_2:-70611060 | Msa1073160:three_prime_UTR |
| GGAAGAGAAAGCTTCTCTCT+TGG | 0.428109 | 7_2:-70612962 | Msa1073160:CDS |
| GGGACAAAACTTGTGTCAAA+TGG | 0.428965 | 7_2:-70613129 | Msa1073160:CDS |
| AGAAACATATGAAGATGAAA+TGG | 0.438111 | 7_2:-70612822 | Msa1073160:CDS |
| AGGATGTAAAACATTGTGAT+TGG | 0.444191 | 7_2:+70613219 | None:intergenic |
| TGCTTAGATGACTTAAAGCC+TGG | 0.448701 | 7_2:-70611835 | Msa1073160:CDS |
| TTACAAAGTGGAAGAAACTT+TGG | 0.456123 | 7_2:-70611156 | Msa1073160:CDS |
| GAAACATATGAAGATGAAAT+GGG | 0.469405 | 7_2:-70612821 | Msa1073160:CDS |
| TTTGATTTAATCCAAAAGAA+AGG | 0.469457 | 7_2:+70612673 | None:intergenic |
| GGTTGGTGGTATAGTGTCAT+TGG | 0.469917 | 7_2:-70611484 | Msa1073160:CDS |
| AGAGCAGCAATTGAGTCATC+TGG | 0.473004 | 7_2:+70612625 | None:intergenic |
| TCTTACCTTTATTGTGACAT+TGG | 0.477470 | 7_2:+70611425 | None:intergenic |
| AACTGAGGAAAACATAAAAT+GGG | 0.478038 | 7_2:-70611914 | Msa1073160:CDS |
| TGAATTTCAACATGATCTCC+AGG | 0.484749 | 7_2:+70611817 | None:intergenic |
| ACAAGTGTGCAAATCTCTTA+GGG | 0.485793 | 7_2:-70612872 | Msa1073160:CDS |
| ACATGTGAAGAAGAGTCAAT+AGG | 0.486449 | 7_2:+70611874 | None:intergenic |
| TTGCACATACCTTGCTTGAA+AGG | 0.487955 | 7_2:+70612332 | None:intergenic |
| TCACGGTTATAAACTTGGGC+AGG | 0.488493 | 7_2:+70612568 | None:intergenic |
| GGAAGATGAGACTAGTGGTT+TGG | 0.491381 | 7_2:+70613319 | None:intergenic |
| ATACCCTATTGCTTATATAG+TGG | 0.495105 | 7_2:+70610917 | None:intergenic |
| CTTTATTGTGACATTGGCAA+TGG | 0.507841 | 7_2:+70611431 | None:intergenic |
| GGATTTGCATGATTTACCAT+TGG | 0.508970 | 7_2:-70612941 | Msa1073160:CDS |
| TTGGAAACATGTCAAAGTGA+TGG | 0.513312 | 7_2:-70611457 | Msa1073160:CDS |
| GAGAGGATTATATATCAAAA+GGG | 0.517000 | 7_2:+70613241 | None:intergenic |
| ATAAACCACTCTCATCAATT+GGG | 0.522472 | 7_2:-70613149 | Msa1073160:CDS |
| TGTGTGAACTCCAAAATCAC+TGG | 0.525464 | 7_2:+70611298 | None:intergenic |
| CTAGTCTCATCTTCCATTGG+TGG | 0.526329 | 7_2:-70613311 | Msa1073160:five_prime_UTR |
| TTCTTAAAATGTGAATGTAA+AGG | 0.526801 | 7_2:-70611068 | Msa1073160:three_prime_UTR |
| AGAGAAGAAATGTGTGTGTA+TGG | 0.527856 | 7_2:+70613481 | None:intergenic |
| GGTACTCTCCTCATGGAAGA+TGG | 0.530560 | 7_2:-70611939 | Msa1073160:CDS |
| TGGAAACATGTCAAAGTGAT+GGG | 0.532140 | 7_2:-70611456 | Msa1073160:CDS |
| TACCTCACGGTTATAAACTT+GGG | 0.540506 | 7_2:+70612564 | None:intergenic |
| GTGATTCTGCTTATAGACAA+TGG | 0.546392 | 7_2:-70612786 | Msa1073160:CDS |
| GTACCACTATATAAGCAATA+GGG | 0.546629 | 7_2:-70610920 | Msa1073160:three_prime_UTR |
| TAGTGGTTTGGCAAAACCAA+TGG | 0.549645 | 7_2:+70613331 | None:intergenic |
| CCACTAGTCTCATCTTCCAT+TGG | 0.549651 | 7_2:-70613314 | Msa1073160:five_prime_UTR |
| GAGTTCACACAATACACAGC+TGG | 0.557018 | 7_2:-70611286 | Msa1073160:CDS |
| TATGATGAGACATACCATAA+GGG | 0.562365 | 7_2:+70611773 | None:intergenic |
| TCTGACAGGTACTCTCCTCA+TGG | 0.562956 | 7_2:-70611946 | Msa1073160:intron |
| AGTGGAAGGCAGCTGTTATG+TGG | 0.565806 | 7_2:+70613506 | None:intergenic |
| AATACACAGCTGGCTCAAGA+TGG | 0.566869 | 7_2:-70611276 | Msa1073160:CDS |
| GAGATCATGTTGAAATTCAG+TGG | 0.569671 | 7_2:-70611813 | Msa1073160:CDS |
| TTTGTCCCAATTGATGAGAG+TGG | 0.571581 | 7_2:+70613144 | None:intergenic |
| TTGGCATCAAAATTTGAGCA+TGG | 0.572122 | 7_2:-70612994 | Msa1073160:CDS |
| AGGAAAACATAAAATGGGAA+AGG | 0.579315 | 7_2:-70611909 | Msa1073160:CDS |
| AGAAAGGAAGAAAACCATGA+AGG | 0.585722 | 7_2:+70612689 | None:intergenic |
| GTAAAACATTGTGATTGGAG+AGG | 0.611801 | 7_2:+70613224 | None:intergenic |
| CACGGTTATAAACTTGGGCA+GGG | 0.616974 | 7_2:+70612569 | None:intergenic |
| GAACAGATACCTTTCAAGCA+AGG | 0.623387 | 7_2:-70612341 | Msa1073160:intron |
| AAATGTGTGTGTATGGTCAG+TGG | 0.623567 | 7_2:+70613488 | None:intergenic |
| GCCACATTGCATAATTCACT+AGG | 0.626475 | 7_2:+70612895 | None:intergenic |
| GCATACAAGACAATGCTAAG+TGG | 0.630540 | 7_2:-70610805 | None:intergenic |
| ATGAAAACAAGATCCACCAA+TGG | 0.636133 | 7_2:+70613298 | None:intergenic |
| AATCAGAAAGTTGCATAGCA+AGG | 0.645692 | 7_2:-70611185 | Msa1073160:CDS |
| ACCTAGTGAATTATGCAATG+TGG | 0.656414 | 7_2:-70612896 | Msa1073160:CDS |
| AAACATATGAAGATGAAATG+GGG | 0.657925 | 7_2:-70612820 | Msa1073160:CDS |
| CAGAAAGTTGCATAGCAAGG+AGG | 0.668496 | 7_2:-70611182 | Msa1073160:CDS |
| TCAGTTGTCCATCTTCCATG+AGG | 0.673134 | 7_2:+70611931 | None:intergenic |
| GCAAGGAGGAGATTACAAAG+TGG | 0.681205 | 7_2:-70611168 | Msa1073160:CDS |
| TCATGGAAGATGGACAACTG+AGG | 0.685364 | 7_2:-70611929 | Msa1073160:CDS |
| GTGTGTGTATGGTCAGTGGA+AGG | 0.689038 | 7_2:+70613492 | None:intergenic |
| TGTGAAGAAGAGTCAATAGG+TGG | 0.697492 | 7_2:+70611877 | None:intergenic |
| TGCCCAAGTTTATAACCGTG+AGG | 0.709466 | 7_2:-70612566 | Msa1073160:intron |
| CCAATGGAAGATGAGACTAG+TGG | 0.716978 | 7_2:+70613314 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATACTAATTTTTAAATCA+GGG | + | chr7_2:70611826-70611845 | None:intergenic | 10.0% |
| !!! | TTAATACTAATTTTTAAATC+AGG | + | chr7_2:70611827-70611846 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATGTTTTGTTAT+AGG | - | chr7_2:70612811-70612830 | Msa1073160:CDS | 10.0% |
| !!! | TATTTATAAAGGATTTTGAA+AGG | + | chr7_2:70611150-70611169 | None:intergenic | 15.0% |
| !!! | AATATTTTGTCTTGTAATTA+AGG | - | chr7_2:70611849-70611868 | Msa1073160:CDS | 15.0% |
| !!! | ATATTTTGTCTTGTAATTAA+GGG | - | chr7_2:70611850-70611869 | Msa1073160:CDS | 15.0% |
| !!! | TTTTCAATTTTTTTTAAAGC+TGG | - | chr7_2:70612308-70612327 | Msa1073160:intron | 15.0% |
| !!! | TTGATAATAGTTAATATTCT+AGG | + | chr7_2:70612673-70612692 | None:intergenic | 15.0% |
| !!! | AAATTTTCCAATTATAGTTA+GGG | + | chr7_2:70613342-70613361 | None:intergenic | 15.0% |
| !!! | TAAATTTTCCAATTATAGTT+AGG | + | chr7_2:70613343-70613362 | None:intergenic | 15.0% |
| !! | TATAATTGGAAAATTTACTT+TGG | - | chr7_2:70613346-70613365 | Msa1073160:five_prime_UTR | 15.0% |
| !!! | GATGCTTAAAACATATTTTA+AGG | - | chr7_2:70610888-70610907 | Msa1073160:three_prime_UTR | 20.0% |
| !! | ATGTAGAAGTGATTATTTAT+GGG | - | chr7_2:70611471-70611490 | Msa1073160:CDS | 20.0% |
| !!! | TTTGATTTAATCCAAAAGAA+AGG | + | chr7_2:70611646-70611665 | None:intergenic | 20.0% |
| !!! | TTTTAAGTACATTTTCAGAA+TGG | - | chr7_2:70611899-70611918 | Msa1073160:CDS | 20.0% |
| !! | AATAACCTATGAAATACTAA+AGG | - | chr7_2:70612099-70612118 | Msa1073160:intron | 20.0% |
| !!! | ATTTTTTTTAAAGCTGGATA+AGG | - | chr7_2:70612314-70612333 | Msa1073160:intron | 20.0% |
| !!! | AAAAATGTTTTGTTATAGGT+TGG | - | chr7_2:70612815-70612834 | Msa1073160:CDS | 20.0% |
| !! | ATAATTAAAATGTATGCTAG+TGG | + | chr7_2:70612921-70612940 | None:intergenic | 20.0% |
| !! | AAAGTGACAACATAATTTAA+GGG | + | chr7_2:70612956-70612975 | None:intergenic | 20.0% |
| !! | TAAAGTGACAACATAATTTA+AGG | + | chr7_2:70612957-70612976 | None:intergenic | 20.0% |
| !! | GATGATTAAATCAATAATGT+TGG | - | chr7_2:70612987-70613006 | Msa1073160:CDS | 20.0% |
| !!! | AATGAAATAGAAGGTTTTTA+TGG | - | chr7_2:70613105-70613124 | Msa1073160:CDS | 20.0% |
| !! | TTCTTAAAATGTGAATGTAA+AGG | - | chr7_2:70613248-70613267 | Msa1073160:five_prime_UTR | 20.0% |
| !!! | AAAGGGTGTTATTTGATATT+AGG | + | chr7_2:70611061-70611080 | None:intergenic | 25.0% |
| ! | GAGAGGATTATATATCAAAA+GGG | + | chr7_2:70611078-70611097 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGGATCATAACAA+AGG | + | chr7_2:70611137-70611156 | None:intergenic | 25.0% |
| ! | TGAGAGTGGTTTATTTATAA+AGG | + | chr7_2:70611161-70611180 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAATACAATCCAA+TGG | + | chr7_2:70611394-70611413 | None:intergenic | 25.0% |
| ! | GATGTAGAAGTGATTATTTA+TGG | - | chr7_2:70611470-70611489 | Msa1073160:CDS | 25.0% |
| ! | AGAAACATATGAAGATGAAA+TGG | - | chr7_2:70611494-70611513 | Msa1073160:intron | 25.0% |
| ! | GAAACATATGAAGATGAAAT+GGG | - | chr7_2:70611495-70611514 | Msa1073160:intron | 25.0% |
| ! | AAACATATGAAGATGAAATG+GGG | - | chr7_2:70611496-70611515 | Msa1073160:intron | 25.0% |
| ! | CATTCAATATTGTTGAGTTT+AGG | - | chr7_2:70612016-70612035 | Msa1073160:intron | 25.0% |
| ! | TACAATGTTAAACTGTTCAA+AGG | + | chr7_2:70612277-70612296 | None:intergenic | 25.0% |
| ! | TGAACAGTTTAACATTGTAT+AGG | - | chr7_2:70612278-70612297 | Msa1073160:intron | 25.0% |
| ! | AACTGAGGAAAACATAAAAT+GGG | - | chr7_2:70612402-70612421 | Msa1073160:CDS | 25.0% |
| ! | CTTATGTAGTCGATAAATAA+AGG | - | chr7_2:70612633-70612652 | Msa1073160:CDS | 25.0% |
| ! | TATCAATGTTTGTGATAGAT+TGG | - | chr7_2:70612687-70612706 | Msa1073160:CDS | 25.0% |
| ! | AAGTGACAACATAATTTAAG+GGG | + | chr7_2:70612955-70612974 | None:intergenic | 25.0% |
| ! | AGAAAAAATCATAGAGAACA+AGG | - | chr7_2:70613081-70613100 | Msa1073160:CDS | 25.0% |
| !!! | TGCTATTCAACATTTTTTGT+TGG | + | chr7_2:70613186-70613205 | None:intergenic | 25.0% |
| !!! | TGTTTGTTTTGTAAGCTTGT+CGG | - | chr7_2:70610926-70610945 | Msa1073160:three_prime_UTR | 30.0% |
| GGAGAGGATTATATATCAAA+AGG | + | chr7_2:70611079-70611098 | None:intergenic | 30.0% | |
| AGGATGTAAAACATTGTGAT+TGG | + | chr7_2:70611100-70611119 | None:intergenic | 30.0% | |
| CAAAGGAGACAAAAGATATA+AGG | + | chr7_2:70611120-70611139 | None:intergenic | 30.0% | |
| AATAAACCACTCTCATCAAT+TGG | - | chr7_2:70611166-70611185 | Msa1073160:CDS | 30.0% | |
| ATAAACCACTCTCATCAATT+GGG | - | chr7_2:70611167-70611186 | Msa1073160:CDS | 30.0% | |
| !!! | TTTTAAGTTTCCTAGCTTCT+AGG | - | chr7_2:70611224-70611243 | Msa1073160:CDS | 30.0% |
| GCAATTACAAAACAAGAGTT+TGG | - | chr7_2:70611303-70611322 | Msa1073160:CDS | 30.0% | |
| ! | TGAATTCTTCTCTATGCTTT+TGG | + | chr7_2:70611572-70611591 | None:intergenic | 30.0% |
| ! | ATGGTTTTCTTCCTTTCTTT+TGG | - | chr7_2:70611632-70611651 | Msa1073160:intron | 30.0% |
| CAGAAAAACACATAAAGTCA+AGG | - | chr7_2:70611668-70611687 | Msa1073160:intron | 30.0% | |
| CTTTATCTTTCTCTTGAGAA+TGG | - | chr7_2:70611712-70611731 | Msa1073160:intron | 30.0% | |
| ! | CTCTTGAGAATGGAAATTTT+TGG | - | chr7_2:70611722-70611741 | Msa1073160:intron | 30.0% |
| AACTGCAGTATTAAACCAAA+AGG | + | chr7_2:70612077-70612096 | None:intergenic | 30.0% | |
| GGTATCCTTTAGTATTTCAT+AGG | + | chr7_2:70612107-70612126 | None:intergenic | 30.0% | |
| TTGAATGTAACTACATGTGT+TGG | - | chr7_2:70612186-70612205 | Msa1073160:intron | 30.0% | |
| CAACTGAGGAAAACATAAAA+TGG | - | chr7_2:70612401-70612420 | Msa1073160:CDS | 30.0% | |
| AGGAAAACATAAAATGGGAA+AGG | - | chr7_2:70612407-70612426 | Msa1073160:intron | 30.0% | |
| TATGATGAGACATACCATAA+GGG | + | chr7_2:70612546-70612565 | None:intergenic | 30.0% | |
| TGTAGTCGATAAATAAAGGT+CGG | - | chr7_2:70612637-70612656 | Msa1073160:CDS | 30.0% | |
| !! | AATGTTTTGTTATAGGTTGG+TGG | - | chr7_2:70612818-70612837 | Msa1073160:CDS | 30.0% |
| TCTTACCTTTATTGTGACAT+TGG | + | chr7_2:70612894-70612913 | None:intergenic | 30.0% | |
| GAACAAGGAAATGAAATAGA+AGG | - | chr7_2:70613096-70613115 | Msa1073160:CDS | 30.0% | |
| ! | GAAATAGAAGGTTTTTATGG+TGG | - | chr7_2:70613108-70613127 | Msa1073160:CDS | 30.0% |
| TTACAAAGTGGAAGAAACTT+TGG | - | chr7_2:70613160-70613179 | Msa1073160:CDS | 30.0% | |
| ! | ATGTGAATGTAAAGGCATAA+AGG | - | chr7_2:70613256-70613275 | Msa1073160:five_prime_UTR | 30.0% |
| ! | TTTTCCAATTATAGTTAGGG+AGG | + | chr7_2:70613339-70613358 | None:intergenic | 30.0% |
| TGTACCACTATATAAGCAAT+AGG | - | chr7_2:70613395-70613414 | Msa1073160:five_prime_UTR | 30.0% | |
| GTACCACTATATAAGCAATA+GGG | - | chr7_2:70613396-70613415 | Msa1073160:five_prime_UTR | 30.0% | |
| ATACCCTATTGCTTATATAG+TGG | + | chr7_2:70613402-70613421 | None:intergenic | 30.0% | |
| AGAGAAGAAATGTGTGTGTA+TGG | + | chr7_2:70610838-70610857 | None:intergenic | 35.0% | |
| TACACACACATTTCTTCTCT+TGG | - | chr7_2:70610838-70610857 | Msa1073160:three_prime_UTR | 35.0% | |
| ! | CAATGGTTTTTGTCTTGAGA+AGG | + | chr7_2:70610971-70610990 | None:intergenic | 35.0% |
| CTTCTCAAGACAAAAACCAT+TGG | - | chr7_2:70610969-70610988 | Msa1073160:three_prime_UTR | 35.0% | |
| ATGAAAACAAGATCCACCAA+TGG | + | chr7_2:70611021-70611040 | None:intergenic | 35.0% | |
| GTAAAACATTGTGATTGGAG+AGG | + | chr7_2:70611095-70611114 | None:intergenic | 35.0% | |
| ! | CTTGTGTCAAATGGTTTTTG+TGG | - | chr7_2:70611196-70611215 | Msa1073160:CDS | 35.0% |
| TTGGCATCAAAATTTGAGCA+TGG | - | chr7_2:70611322-70611341 | Msa1073160:intron | 35.0% | |
| ATTTGAGCATGGAGAAAAAG+AGG | - | chr7_2:70611333-70611352 | Msa1073160:intron | 35.0% | |
| GGATTTGCATGATTTACCAT+TGG | - | chr7_2:70611375-70611394 | Msa1073160:intron | 35.0% | |
| ACCTAGTGAATTATGCAATG+TGG | - | chr7_2:70611420-70611439 | Msa1073160:intron | 35.0% | |
| ACAAGTGTGCAAATCTCTTA+GGG | - | chr7_2:70611444-70611463 | Msa1073160:CDS | 35.0% | |
| ! | ATGAAATGGGGCAAAGTTTT+AGG | - | chr7_2:70611508-70611527 | Msa1073160:intron | 35.0% |
| GTGATTCTGCTTATAGACAA+TGG | - | chr7_2:70611530-70611549 | Msa1073160:intron | 35.0% | |
| ACAATACTTGCTTTCCTTCA+TGG | - | chr7_2:70611613-70611632 | Msa1073160:intron | 35.0% | |
| AGAAAGGAAGAAAACCATGA+AGG | + | chr7_2:70611630-70611649 | None:intergenic | 35.0% | |
| TACCTCACGGTTATAAACTT+GGG | + | chr7_2:70611755-70611774 | None:intergenic | 35.0% | |
| TTACCTCACGGTTATAAACT+TGG | + | chr7_2:70611756-70611775 | None:intergenic | 35.0% | |
| TATAACCGTGAGGTAAATAC+TGG | - | chr7_2:70611760-70611779 | Msa1073160:intron | 35.0% | |
| !! | AGGTAAAAAGACAAGTTGGT+TGG | + | chr7_2:70612044-70612063 | None:intergenic | 35.0% |
| GTACAGGTAAAAAGACAAGT+TGG | + | chr7_2:70612048-70612067 | None:intergenic | 35.0% | |
| ! | TACCTGTACTATTGTCCTTT+TGG | - | chr7_2:70612059-70612078 | Msa1073160:intron | 35.0% |
| AACCAAAAGGACAATAGTAC+AGG | + | chr7_2:70612064-70612083 | None:intergenic | 35.0% | |
| !!! | GTTAGTTTTAGTGTTGTGCA+CGG | + | chr7_2:70612128-70612147 | None:intergenic | 35.0% |
| !! | ACTTCAAATCGAAAGCATTC+CGG | + | chr7_2:70612234-70612253 | None:intergenic | 35.0% |
| ! | AAGTTCATGTTTTCTCTGAC+AGG | - | chr7_2:70612356-70612375 | Msa1073160:CDS | 35.0% |
| ACATGTGAAGAAGAGTCAAT+AGG | + | chr7_2:70612445-70612464 | None:intergenic | 35.0% | |
| TGAATTTCAACATGATCTCC+AGG | + | chr7_2:70612502-70612521 | None:intergenic | 35.0% | |
| GAGATCATGTTGAAATTCAG+TGG | - | chr7_2:70612503-70612522 | Msa1073160:intron | 35.0% | |
| AGAAACAATGAGTTCCCTTA+TGG | - | chr7_2:70612529-70612548 | Msa1073160:intron | 35.0% | |
| CTATGATGAGACATACCATA+AGG | + | chr7_2:70612547-70612566 | None:intergenic | 35.0% | |
| TTTACGCGACTATTTAGAAG+AGG | + | chr7_2:70612611-70612630 | None:intergenic | 35.0% | |
| ! | GTATAGTGTCATTGGTCATT+TGG | - | chr7_2:70612840-70612859 | Msa1073160:CDS | 35.0% |
| TTGGAAACATGTCAAAGTGA+TGG | - | chr7_2:70612859-70612878 | Msa1073160:CDS | 35.0% | |
| TGGAAACATGTCAAAGTGAT+GGG | - | chr7_2:70612860-70612879 | Msa1073160:CDS | 35.0% | |
| CTTTATTGTGACATTGGCAA+TGG | + | chr7_2:70612888-70612907 | None:intergenic | 35.0% | |
| CATTGCCAATGTCACAATAA+AGG | - | chr7_2:70612886-70612905 | Msa1073160:CDS | 35.0% | |
| AATCAGAAAGTTGCATAGCA+AGG | - | chr7_2:70613131-70613150 | Msa1073160:CDS | 35.0% | |
| ATTCTTGCATGGACATAGTT+AGG | + | chr7_2:70613315-70613334 | None:intergenic | 35.0% | |
| AATGCCTCCCTAACTATAAT+TGG | - | chr7_2:70613332-70613351 | Msa1073160:five_prime_UTR | 35.0% | |
| AAATGTGTGTGTATGGTCAG+TGG | + | chr7_2:70610831-70610850 | None:intergenic | 40.0% | |
| ! | TAGTGGTTTGGCAAAACCAA+TGG | + | chr7_2:70610988-70611007 | None:intergenic | 40.0% |
| TTTGTCCCAATTGATGAGAG+TGG | + | chr7_2:70611175-70611194 | None:intergenic | 40.0% | |
| GGGACAAAACTTGTGTCAAA+TGG | - | chr7_2:70611187-70611206 | Msa1073160:CDS | 40.0% | |
| !!! | TTGTTTTGAGCCTAGAAGCT+AGG | + | chr7_2:70611237-70611256 | None:intergenic | 40.0% |
| GCCACATTGCATAATTCACT+AGG | + | chr7_2:70611424-70611443 | None:intergenic | 40.0% | |
| CACAAGTGTGCAAATCTCTT+AGG | - | chr7_2:70611443-70611462 | Msa1073160:CDS | 40.0% | |
| TGCAACCAGTATTTACCTCA+CGG | + | chr7_2:70611768-70611787 | None:intergenic | 40.0% | |
| !! | TACTGGTTGCATGCAGATTT+TGG | - | chr7_2:70611777-70611796 | Msa1073160:intron | 40.0% |
| ! | CATTTTCAGAATGGTCATGC+TGG | - | chr7_2:70611908-70611927 | Msa1073160:CDS | 40.0% |
| GAACAGATACCTTTCAAGCA+AGG | - | chr7_2:70611975-70611994 | Msa1073160:intron | 40.0% | |
| TTGCACATACCTTGCTTGAA+AGG | + | chr7_2:70611987-70612006 | None:intergenic | 40.0% | |
| !! | CATGTGTTGGTAACATGTGT+TGG | - | chr7_2:70612199-70612218 | Msa1073160:intron | 40.0% |
| !! | TTTGAAGTGTCGTGCTACAT+AGG | - | chr7_2:70612246-70612265 | Msa1073160:intron | 40.0% |
| TGTGAAGAAGAGTCAATAGG+TGG | + | chr7_2:70612442-70612461 | None:intergenic | 40.0% | |
| TGCTTAGATGACTTAAAGCC+TGG | - | chr7_2:70612481-70612500 | Msa1073160:intron | 40.0% | |
| TGTGTGAACTCCAAAATCAC+TGG | + | chr7_2:70613021-70613040 | None:intergenic | 40.0% | |
| GGAAGATGAGACTAGTGGTT+TGG | + | chr7_2:70611000-70611019 | None:intergenic | 45.0% | |
| CCAATGGAAGATGAGACTAG+TGG | + | chr7_2:70611005-70611024 | None:intergenic | 45.0% | |
| ! | CCACTAGTCTCATCTTCCAT+TGG | - | chr7_2:70611002-70611021 | Msa1073160:intron | 45.0% |
| CTAGTCTCATCTTCCATTGG+TGG | - | chr7_2:70611005-70611024 | Msa1073160:intron | 45.0% | |
| GGAAGAGAAAGCTTCTCTCT+TGG | - | chr7_2:70611354-70611373 | Msa1073160:intron | 45.0% | |
| AGAGCAGCAATTGAGTCATC+TGG | + | chr7_2:70611694-70611713 | None:intergenic | 45.0% | |
| CACGGTTATAAACTTGGGCA+GGG | + | chr7_2:70611750-70611769 | None:intergenic | 45.0% | |
| TCACGGTTATAAACTTGGGC+AGG | + | chr7_2:70611751-70611770 | None:intergenic | 45.0% | |
| TGCCCAAGTTTATAACCGTG+AGG | - | chr7_2:70611750-70611769 | Msa1073160:intron | 45.0% | |
| TCAGTTGTCCATCTTCCATG+AGG | + | chr7_2:70612388-70612407 | None:intergenic | 45.0% | |
| TCATGGAAGATGGACAACTG+AGG | - | chr7_2:70612387-70612406 | Msa1073160:CDS | 45.0% | |
| !! | GGTTGGTGGTATAGTGTCAT+TGG | - | chr7_2:70612832-70612851 | Msa1073160:CDS | 45.0% |
| ! | GGTGACAGATCCAGTGATTT+TGG | - | chr7_2:70613008-70613027 | Msa1073160:CDS | 45.0% |
| GAGTTCACACAATACACAGC+TGG | - | chr7_2:70613030-70613049 | Msa1073160:CDS | 45.0% | |
| ! | AATACACAGCTGGCTCAAGA+TGG | - | chr7_2:70613040-70613059 | Msa1073160:CDS | 45.0% |
| CAGAAAGTTGCATAGCAAGG+AGG | - | chr7_2:70613134-70613153 | Msa1073160:CDS | 45.0% | |
| GCAAGGAGGAGATTACAAAG+TGG | - | chr7_2:70613148-70613167 | Msa1073160:CDS | 45.0% | |
| AGTGGAAGGCAGCTGTTATG+TGG | + | chr7_2:70610813-70610832 | None:intergenic | 50.0% | |
| GTGTGTGTATGGTCAGTGGA+AGG | + | chr7_2:70610827-70610846 | None:intergenic | 50.0% | |
| ! | CATGTGTTGGTGTCTGACAC+CGG | - | chr7_2:70612212-70612231 | Msa1073160:intron | 50.0% |
| TCTGACAGGTACTCTCCTCA+TGG | - | chr7_2:70612370-70612389 | Msa1073160:CDS | 50.0% | |
| GGTACTCTCCTCATGGAAGA+TGG | - | chr7_2:70612377-70612396 | Msa1073160:CDS | 50.0% | |
| !! | GTTAGGGAGGCATTCTTGCA+TGG | + | chr7_2:70613326-70613345 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 70610807 | 70613531 | 70610807 | ID=Msa1073160;Name=Msa1073160 |
| chr7_2 | mRNA | 70610807 | 70613531 | 70610807 | ID=Msa1073160-mRNA-1;Parent=Msa1073160;Name=Msa1073160-mRNA-1;_AED=0.06;_eAED=0.06;_QI=299|1|1|1|0.8|0.66|6|306|393 |
| chr7_2 | exon | 70610807 | 70610989 | 70610807 | ID=Msa1073160-mRNA-1:exon:15916;Parent=Msa1073160-mRNA-1 |
| chr7_2 | exon | 70611012 | 70611322 | 70611012 | ID=Msa1073160-mRNA-1:exon:15915;Parent=Msa1073160-mRNA-1 |
| chr7_2 | exon | 70611431 | 70611505 | 70611431 | ID=Msa1073160-mRNA-1:exon:15914;Parent=Msa1073160-mRNA-1 |
| chr7_2 | exon | 70611788 | 70611960 | 70611788 | ID=Msa1073160-mRNA-1:exon:15913;Parent=Msa1073160-mRNA-1 |
| chr7_2 | exon | 70612342 | 70612421 | 70612342 | ID=Msa1073160-mRNA-1:exon:15912;Parent=Msa1073160-mRNA-1 |
| chr7_2 | exon | 70612567 | 70613531 | 70612567 | ID=Msa1073160-mRNA-1:exon:15911;Parent=Msa1073160-mRNA-1 |
| chr7_2 | five_prime_UTR | 70613233 | 70613531 | 70613233 | ID=Msa1073160-mRNA-1:five_prime_utr;Parent=Msa1073160-mRNA-1 |
| chr7_2 | CDS | 70612567 | 70613232 | 70612567 | ID=Msa1073160-mRNA-1:cds;Parent=Msa1073160-mRNA-1 |
| chr7_2 | CDS | 70612342 | 70612421 | 70612342 | ID=Msa1073160-mRNA-1:cds;Parent=Msa1073160-mRNA-1 |
| chr7_2 | CDS | 70611788 | 70611960 | 70611788 | ID=Msa1073160-mRNA-1:cds;Parent=Msa1073160-mRNA-1 |
| chr7_2 | CDS | 70611431 | 70611505 | 70611431 | ID=Msa1073160-mRNA-1:cds;Parent=Msa1073160-mRNA-1 |
| chr7_2 | CDS | 70611135 | 70611322 | 70611135 | ID=Msa1073160-mRNA-1:cds;Parent=Msa1073160-mRNA-1 |
| chr7_2 | three_prime_UTR | 70611012 | 70611134 | 70611012 | ID=Msa1073160-mRNA-1:three_prime_utr;Parent=Msa1073160-mRNA-1 |
| chr7_2 | three_prime_UTR | 70610807 | 70610989 | 70610807 | ID=Msa1073160-mRNA-1:three_prime_utr;Parent=Msa1073160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
