Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424090 | sp|Q6NLB1|FB118_ARATH | 55.493 | 355 | 144 | 5 | 45 | 393 | 25 | 371 | 2.28e-141 | 410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424090 | Q2HSY4 | 94.162 | 394 | 22 | 1 | 1 | 393 | 1 | 394 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1382720 | Msa1424090 | 0.813510 | 2.468490e-51 | -8.615850e-47 |
| Msa0378340 | Msa1424090 | 0.811731 | 6.045024e-51 | -8.615850e-47 |
| Msa0427690 | Msa1424090 | 0.813625 | 2.328403e-51 | -8.615850e-47 |
| Msa1073160 | Msa1424090 | 0.996133 | 8.634781e-224 | -8.615850e-47 |
| Msa0518520 | Msa1424090 | 0.810862 | 9.333738e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424090 | MtrunA17_Chr7g0256121 | 94.162 | 394 | 22 | 1 | 1 | 393 | 1 | 394 | 0.0 | 736 |
| Msa1424090 | MtrunA17_Chr5g0441461 | 53.388 | 369 | 157 | 4 | 39 | 393 | 32 | 399 | 2.27e-141 | 408 |
| Msa1424090 | MtrunA17_Chr3g0094081 | 57.738 | 336 | 133 | 4 | 66 | 393 | 41 | 375 | 2.91e-139 | 402 |
| Msa1424090 | MtrunA17_Chr7g0256131 | 43.831 | 308 | 160 | 5 | 82 | 386 | 9 | 306 | 4.26e-85 | 261 |
| Msa1424090 | MtrunA17_Chr7g0256161 | 44.785 | 326 | 144 | 8 | 88 | 386 | 11 | 327 | 5.92e-83 | 256 |
| Msa1424090 | MtrunA17_Chr7g0256061 | 86.620 | 142 | 18 | 1 | 1 | 141 | 1 | 142 | 2.76e-68 | 212 |
| Msa1424090 | MtrunA17_Chr7g0256141 | 38.182 | 330 | 180 | 10 | 66 | 391 | 2 | 311 | 1.08e-58 | 193 |
| Msa1424090 | MtrunA17_Chr6g0465451 | 38.658 | 313 | 172 | 7 | 86 | 391 | 18 | 317 | 2.86e-56 | 187 |
| Msa1424090 | MtrunA17_Chr7g0256151 | 39.781 | 274 | 149 | 7 | 66 | 334 | 1 | 263 | 1.17e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424090 | AT2G26850.1 | 55.493 | 355 | 144 | 5 | 45 | 393 | 25 | 371 | 2.32e-142 | 410 |
| Msa1424090 | AT2G32560.1 | 49.875 | 399 | 165 | 6 | 1 | 393 | 2 | 371 | 3.53e-136 | 394 |
| Msa1424090 | AT2G41170.1 | 49.858 | 351 | 165 | 4 | 52 | 393 | 23 | 371 | 7.99e-114 | 337 |
| Msa1424090 | AT2G41170.2 | 45.573 | 384 | 165 | 5 | 52 | 393 | 23 | 404 | 4.01e-107 | 321 |
| Msa1424090 | AT2G32560.2 | 51.546 | 291 | 128 | 3 | 45 | 329 | 25 | 308 | 2.46e-105 | 314 |
| Msa1424090 | AT2G26850.2 | 52.985 | 268 | 112 | 5 | 45 | 306 | 25 | 284 | 4.01e-92 | 279 |
| Msa1424090 | AT2G41170.3 | 53.361 | 238 | 98 | 3 | 81 | 307 | 51 | 286 | 4.04e-76 | 238 |
Find 87 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGGTGTTATTTGATATT+AGG | 0.186799 | tig0025631:+12717 | None:intergenic |
| CAACTGAGGAAAACATAAAA+TGG | 0.213796 | tig0025631:-11374 | Msa1424090:CDS |
| ACAATACTTGCTTTCCTTCA+TGG | 0.246700 | tig0025631:-12162 | Msa1424090:CDS |
| TGAATTCTTCTCTATGCTTT+TGG | 0.274166 | tig0025631:+12206 | None:intergenic |
| GATGTAGAAGTGATTATTTA+TGG | 0.288645 | tig0025631:-12305 | Msa1424090:CDS |
| GGTGACAGATCCAGTGATTT+TGG | 0.292587 | tig0025631:-10767 | Msa1424090:intron |
| TGAGAGTGGTTTATTTATAA+AGG | 0.303379 | tig0025631:+12617 | None:intergenic |
| CACAAGTGTGCAAATCTCTT+AGG | 0.319042 | tig0025631:-12332 | Msa1424090:CDS |
| AATAAACCACTCTCATCAAT+TGG | 0.322959 | tig0025631:-12609 | Msa1424090:CDS |
| CAAAGGAGACAAAAGATATA+AGG | 0.353602 | tig0025631:+12658 | None:intergenic |
| TGTACCACTATATAAGCAAT+AGG | 0.354652 | tig0025631:-10380 | Msa1424090:three_prime_UTR |
| GCAATTACAAAACAAGAGTT+TGG | 0.359351 | tig0025631:-12472 | Msa1424090:CDS |
| ATTCTTGCATGGACATAGTT+AGG | 0.362365 | tig0025631:+10463 | None:intergenic |
| TACACACACATTTCTTCTCT+TGG | 0.364530 | tig0025631:-12937 | Msa1424090:five_prime_UTR |
| GTATAGTGTCATTGGTCATT+TGG | 0.367045 | tig0025631:-10935 | Msa1424090:CDS |
| CTTTATCTTTCTCTTGAGAA+TGG | 0.369439 | tig0025631:-12063 | Msa1424090:CDS |
| CATTGCCAATGTCACAATAA+AGG | 0.376211 | tig0025631:-10889 | Msa1424090:intron |
| GAACAAGGAAATGAAATAGA+AGG | 0.401759 | tig0025631:-10679 | Msa1424090:CDS |
| ATGTAGAAGTGATTATTTAT+GGG | 0.401802 | tig0025631:-12304 | Msa1424090:CDS |
| TTACCTCACGGTTATAAACT+TGG | 0.402760 | tig0025631:+12022 | None:intergenic |
| AGAAACAATGAGTTCCCTTA+TGG | 0.417625 | tig0025631:-11246 | Msa1424090:intron |
| GGAGAGGATTATATATCAAA+AGG | 0.419136 | tig0025631:+12699 | None:intergenic |
| TATAATTGGAAAATTTACTT+TGG | 0.419645 | tig0025631:-10429 | Msa1424090:three_prime_UTR |
| ATGTGAATGTAAAGGCATAA+AGG | 0.422726 | tig0025631:-10519 | Msa1424090:three_prime_UTR |
| GGAAGAGAAAGCTTCTCTCT+TGG | 0.428109 | tig0025631:-12421 | Msa1424090:CDS |
| GGGACAAAACTTGTGTCAAA+TGG | 0.428965 | tig0025631:-12588 | Msa1424090:CDS |
| AGAAACATATGAAGATGAAA+TGG | 0.438111 | tig0025631:-12281 | Msa1424090:CDS |
| AGGATGTAAAACATTGTGAT+TGG | 0.444191 | tig0025631:+12678 | None:intergenic |
| TGCTTAGATGACTTAAAGCC+TGG | 0.448701 | tig0025631:-11294 | Msa1424090:CDS |
| TTACAAAGTGGAAGAAACTT+TGG | 0.456123 | tig0025631:-10615 | Msa1424090:CDS |
| GAAACATATGAAGATGAAAT+GGG | 0.469405 | tig0025631:-12280 | Msa1424090:CDS |
| TTTGATTTAATCCAAAAGAA+AGG | 0.469457 | tig0025631:+12132 | None:intergenic |
| GGTTGGTGGTATAGTGTCAT+TGG | 0.469917 | tig0025631:-10943 | Msa1424090:CDS |
| AGAGCAGCAATTGAGTCATC+TGG | 0.473004 | tig0025631:+12084 | None:intergenic |
| TCTTACCTTTATTGTGACAT+TGG | 0.477470 | tig0025631:+10884 | None:intergenic |
| AACTGAGGAAAACATAAAAT+GGG | 0.478038 | tig0025631:-11373 | Msa1424090:CDS |
| TGAATTTCAACATGATCTCC+AGG | 0.484749 | tig0025631:+11276 | None:intergenic |
| ACAAGTGTGCAAATCTCTTA+GGG | 0.485793 | tig0025631:-12331 | Msa1424090:CDS |
| ACATGTGAAGAAGAGTCAAT+AGG | 0.486449 | tig0025631:+11333 | None:intergenic |
| TTGCACATACCTTGCTTGAA+AGG | 0.487955 | tig0025631:+11791 | None:intergenic |
| TCACGGTTATAAACTTGGGC+AGG | 0.488493 | tig0025631:+12027 | None:intergenic |
| GGAAGATGAGACTAGTGGTT+TGG | 0.491381 | tig0025631:+12778 | None:intergenic |
| ATACCCTATTGCTTATATAG+TGG | 0.495105 | tig0025631:+10376 | None:intergenic |
| CTTTATTGTGACATTGGCAA+TGG | 0.507841 | tig0025631:+10890 | None:intergenic |
| GGATTTGCATGATTTACCAT+TGG | 0.508970 | tig0025631:-12400 | Msa1424090:CDS |
| TTGGAAACATGTCAAAGTGA+TGG | 0.513312 | tig0025631:-10916 | Msa1424090:CDS |
| GAGAGGATTATATATCAAAA+GGG | 0.517000 | tig0025631:+12700 | None:intergenic |
| ATAAACCACTCTCATCAATT+GGG | 0.522472 | tig0025631:-12608 | Msa1424090:CDS |
| TGTGTGAACTCCAAAATCAC+TGG | 0.525464 | tig0025631:+10757 | None:intergenic |
| CTAGTCTCATCTTCCATTGG+TGG | 0.526329 | tig0025631:-12770 | Msa1424090:five_prime_UTR |
| TTCTTAAAATGTGAATGTAA+AGG | 0.526801 | tig0025631:-10527 | Msa1424090:three_prime_UTR |
| AGAGAAGAAATGTGTGTGTA+TGG | 0.527856 | tig0025631:+12940 | None:intergenic |
| GGTACTCTCCTCATGGAAGA+TGG | 0.530560 | tig0025631:-11398 | Msa1424090:CDS |
| TGGAAACATGTCAAAGTGAT+GGG | 0.532140 | tig0025631:-10915 | Msa1424090:CDS |
| TACCTCACGGTTATAAACTT+GGG | 0.540506 | tig0025631:+12023 | None:intergenic |
| GTGATTCTGCTTATAGACAA+TGG | 0.546392 | tig0025631:-12245 | Msa1424090:CDS |
| GTACCACTATATAAGCAATA+GGG | 0.546629 | tig0025631:-10379 | Msa1424090:three_prime_UTR |
| TAGTGGTTTGGCAAAACCAA+TGG | 0.549645 | tig0025631:+12790 | None:intergenic |
| CCACTAGTCTCATCTTCCAT+TGG | 0.549651 | tig0025631:-12773 | Msa1424090:five_prime_UTR |
| GAGTTCACACAATACACAGC+TGG | 0.557018 | tig0025631:-10745 | Msa1424090:CDS |
| TATGATGAGACATACCATAA+GGG | 0.562365 | tig0025631:+11232 | None:intergenic |
| TCTGACAGGTACTCTCCTCA+TGG | 0.562956 | tig0025631:-11405 | Msa1424090:intron |
| AGTGGAAGGCAGCTGTTATG+TGG | 0.565806 | tig0025631:+12965 | None:intergenic |
| AATACACAGCTGGCTCAAGA+TGG | 0.566869 | tig0025631:-10735 | Msa1424090:CDS |
| GAGATCATGTTGAAATTCAG+TGG | 0.569671 | tig0025631:-11272 | Msa1424090:CDS |
| TTTGTCCCAATTGATGAGAG+TGG | 0.571581 | tig0025631:+12603 | None:intergenic |
| TTGGCATCAAAATTTGAGCA+TGG | 0.572122 | tig0025631:-12453 | Msa1424090:CDS |
| AGGAAAACATAAAATGGGAA+AGG | 0.579315 | tig0025631:-11368 | Msa1424090:CDS |
| AGAAAGGAAGAAAACCATGA+AGG | 0.585722 | tig0025631:+12148 | None:intergenic |
| GTAAAACATTGTGATTGGAG+AGG | 0.611801 | tig0025631:+12683 | None:intergenic |
| CACGGTTATAAACTTGGGCA+GGG | 0.616974 | tig0025631:+12028 | None:intergenic |
| GAACAGATACCTTTCAAGCA+AGG | 0.623387 | tig0025631:-11800 | Msa1424090:intron |
| AAATGTGTGTGTATGGTCAG+TGG | 0.623567 | tig0025631:+12947 | None:intergenic |
| GCCACATTGCATAATTCACT+AGG | 0.626475 | tig0025631:+12354 | None:intergenic |
| GCATACAAGACAATGCTAAG+TGG | 0.630540 | tig0025631:-10264 | None:intergenic |
| ATGAAAACAAGATCCACCAA+TGG | 0.636133 | tig0025631:+12757 | None:intergenic |
| AATCAGAAAGTTGCATAGCA+AGG | 0.645692 | tig0025631:-10644 | Msa1424090:CDS |
| ACCTAGTGAATTATGCAATG+TGG | 0.656414 | tig0025631:-12355 | Msa1424090:CDS |
| AAACATATGAAGATGAAATG+GGG | 0.657925 | tig0025631:-12279 | Msa1424090:CDS |
| CAGAAAGTTGCATAGCAAGG+AGG | 0.668496 | tig0025631:-10641 | Msa1424090:CDS |
| TCAGTTGTCCATCTTCCATG+AGG | 0.673134 | tig0025631:+11390 | None:intergenic |
| GCAAGGAGGAGATTACAAAG+TGG | 0.681205 | tig0025631:-10627 | Msa1424090:CDS |
| TCATGGAAGATGGACAACTG+AGG | 0.685364 | tig0025631:-11388 | Msa1424090:CDS |
| GTGTGTGTATGGTCAGTGGA+AGG | 0.689038 | tig0025631:+12951 | None:intergenic |
| TGTGAAGAAGAGTCAATAGG+TGG | 0.697492 | tig0025631:+11336 | None:intergenic |
| TGCCCAAGTTTATAACCGTG+AGG | 0.709466 | tig0025631:-12025 | Msa1424090:intron |
| CCAATGGAAGATGAGACTAG+TGG | 0.716978 | tig0025631:+12773 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATACTAATTTTTAAATCA+GGG | + | tig0025631:11285-11304 | None:intergenic | 10.0% |
| !!! | TTAATACTAATTTTTAAATC+AGG | + | tig0025631:11286-11305 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATGTTTTGTTAT+AGG | - | tig0025631:12270-12289 | Msa1424090:CDS | 10.0% |
| !!! | TATTTATAAAGGATTTTGAA+AGG | + | tig0025631:10609-10628 | None:intergenic | 15.0% |
| !!! | AATATTTTGTCTTGTAATTA+AGG | - | tig0025631:11308-11327 | Msa1424090:CDS | 15.0% |
| !!! | ATATTTTGTCTTGTAATTAA+GGG | - | tig0025631:11309-11328 | Msa1424090:CDS | 15.0% |
| !!! | TTTTCAATTTTTTTTAAAGC+TGG | - | tig0025631:11767-11786 | Msa1424090:intron | 15.0% |
| !!! | TTGATAATAGTTAATATTCT+AGG | + | tig0025631:12132-12151 | None:intergenic | 15.0% |
| !!! | AAATTTTCCAATTATAGTTA+GGG | + | tig0025631:12801-12820 | None:intergenic | 15.0% |
| !!! | TAAATTTTCCAATTATAGTT+AGG | + | tig0025631:12802-12821 | None:intergenic | 15.0% |
| !! | TATAATTGGAAAATTTACTT+TGG | - | tig0025631:12805-12824 | Msa1424090:five_prime_UTR | 15.0% |
| !!! | GATGCTTAAAACATATTTTA+AGG | - | tig0025631:10347-10366 | Msa1424090:three_prime_UTR | 20.0% |
| !! | ATGTAGAAGTGATTATTTAT+GGG | - | tig0025631:10930-10949 | Msa1424090:CDS | 20.0% |
| !!! | TTTGATTTAATCCAAAAGAA+AGG | + | tig0025631:11105-11124 | None:intergenic | 20.0% |
| !!! | TTTTAAGTACATTTTCAGAA+TGG | - | tig0025631:11358-11377 | Msa1424090:CDS | 20.0% |
| !! | AATAACCTATGAAATACTAA+AGG | - | tig0025631:11558-11577 | Msa1424090:intron | 20.0% |
| !!! | ATTTTTTTTAAAGCTGGATA+AGG | - | tig0025631:11773-11792 | Msa1424090:intron | 20.0% |
| !!! | AAAAATGTTTTGTTATAGGT+TGG | - | tig0025631:12274-12293 | Msa1424090:CDS | 20.0% |
| !! | ATAATTAAAATGTATGCTAG+TGG | + | tig0025631:12380-12399 | None:intergenic | 20.0% |
| !! | AAAGTGACAACATAATTTAA+GGG | + | tig0025631:12415-12434 | None:intergenic | 20.0% |
| !! | TAAAGTGACAACATAATTTA+AGG | + | tig0025631:12416-12435 | None:intergenic | 20.0% |
| !! | GATGATTAAATCAATAATGT+TGG | - | tig0025631:12446-12465 | Msa1424090:CDS | 20.0% |
| !!! | AATGAAATAGAAGGTTTTTA+TGG | - | tig0025631:12564-12583 | Msa1424090:CDS | 20.0% |
| !! | TTCTTAAAATGTGAATGTAA+AGG | - | tig0025631:12707-12726 | Msa1424090:five_prime_UTR | 20.0% |
| !!! | AAAGGGTGTTATTTGATATT+AGG | + | tig0025631:10520-10539 | None:intergenic | 25.0% |
| ! | GAGAGGATTATATATCAAAA+GGG | + | tig0025631:10537-10556 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGGATCATAACAA+AGG | + | tig0025631:10596-10615 | None:intergenic | 25.0% |
| ! | TGAGAGTGGTTTATTTATAA+AGG | + | tig0025631:10620-10639 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAATACAATCCAA+TGG | + | tig0025631:10853-10872 | None:intergenic | 25.0% |
| ! | GATGTAGAAGTGATTATTTA+TGG | - | tig0025631:10929-10948 | Msa1424090:CDS | 25.0% |
| ! | AGAAACATATGAAGATGAAA+TGG | - | tig0025631:10953-10972 | Msa1424090:intron | 25.0% |
| ! | GAAACATATGAAGATGAAAT+GGG | - | tig0025631:10954-10973 | Msa1424090:intron | 25.0% |
| ! | AAACATATGAAGATGAAATG+GGG | - | tig0025631:10955-10974 | Msa1424090:intron | 25.0% |
| ! | CATTCAATATTGTTGAGTTT+AGG | - | tig0025631:11475-11494 | Msa1424090:intron | 25.0% |
| ! | TACAATGTTAAACTGTTCAA+AGG | + | tig0025631:11736-11755 | None:intergenic | 25.0% |
| ! | TGAACAGTTTAACATTGTAT+AGG | - | tig0025631:11737-11756 | Msa1424090:intron | 25.0% |
| ! | AACTGAGGAAAACATAAAAT+GGG | - | tig0025631:11861-11880 | Msa1424090:CDS | 25.0% |
| ! | CTTATGTAGTCGATAAATAA+AGG | - | tig0025631:12092-12111 | Msa1424090:CDS | 25.0% |
| ! | TATCAATGTTTGTGATAGAT+TGG | - | tig0025631:12146-12165 | Msa1424090:CDS | 25.0% |
| ! | AAGTGACAACATAATTTAAG+GGG | + | tig0025631:12414-12433 | None:intergenic | 25.0% |
| ! | AGAAAAAATCATAGAGAACA+AGG | - | tig0025631:12540-12559 | Msa1424090:CDS | 25.0% |
| !!! | TGCTATTCAACATTTTTTGT+TGG | + | tig0025631:12645-12664 | None:intergenic | 25.0% |
| !!! | TGTTTGTTTTGTAAGCTTGT+CGG | - | tig0025631:10385-10404 | Msa1424090:three_prime_UTR | 30.0% |
| GGAGAGGATTATATATCAAA+AGG | + | tig0025631:10538-10557 | None:intergenic | 30.0% | |
| AGGATGTAAAACATTGTGAT+TGG | + | tig0025631:10559-10578 | None:intergenic | 30.0% | |
| CAAAGGAGACAAAAGATATA+AGG | + | tig0025631:10579-10598 | None:intergenic | 30.0% | |
| AATAAACCACTCTCATCAAT+TGG | - | tig0025631:10625-10644 | Msa1424090:CDS | 30.0% | |
| ATAAACCACTCTCATCAATT+GGG | - | tig0025631:10626-10645 | Msa1424090:CDS | 30.0% | |
| !!! | TTTTAAGTTTCCTAGCTTCT+AGG | - | tig0025631:10683-10702 | Msa1424090:CDS | 30.0% |
| GCAATTACAAAACAAGAGTT+TGG | - | tig0025631:10762-10781 | Msa1424090:CDS | 30.0% | |
| ! | TGAATTCTTCTCTATGCTTT+TGG | + | tig0025631:11031-11050 | None:intergenic | 30.0% |
| ! | ATGGTTTTCTTCCTTTCTTT+TGG | - | tig0025631:11091-11110 | Msa1424090:intron | 30.0% |
| CAGAAAAACACATAAAGTCA+AGG | - | tig0025631:11127-11146 | Msa1424090:intron | 30.0% | |
| CTTTATCTTTCTCTTGAGAA+TGG | - | tig0025631:11171-11190 | Msa1424090:intron | 30.0% | |
| ! | CTCTTGAGAATGGAAATTTT+TGG | - | tig0025631:11181-11200 | Msa1424090:intron | 30.0% |
| AACTGCAGTATTAAACCAAA+AGG | + | tig0025631:11536-11555 | None:intergenic | 30.0% | |
| GGTATCCTTTAGTATTTCAT+AGG | + | tig0025631:11566-11585 | None:intergenic | 30.0% | |
| TTGAATGTAACTACATGTGT+TGG | - | tig0025631:11645-11664 | Msa1424090:intron | 30.0% | |
| CAACTGAGGAAAACATAAAA+TGG | - | tig0025631:11860-11879 | Msa1424090:CDS | 30.0% | |
| AGGAAAACATAAAATGGGAA+AGG | - | tig0025631:11866-11885 | Msa1424090:intron | 30.0% | |
| TATGATGAGACATACCATAA+GGG | + | tig0025631:12005-12024 | None:intergenic | 30.0% | |
| TGTAGTCGATAAATAAAGGT+CGG | - | tig0025631:12096-12115 | Msa1424090:CDS | 30.0% | |
| !! | AATGTTTTGTTATAGGTTGG+TGG | - | tig0025631:12277-12296 | Msa1424090:CDS | 30.0% |
| TCTTACCTTTATTGTGACAT+TGG | + | tig0025631:12353-12372 | None:intergenic | 30.0% | |
| GAACAAGGAAATGAAATAGA+AGG | - | tig0025631:12555-12574 | Msa1424090:CDS | 30.0% | |
| ! | GAAATAGAAGGTTTTTATGG+TGG | - | tig0025631:12567-12586 | Msa1424090:CDS | 30.0% |
| TTACAAAGTGGAAGAAACTT+TGG | - | tig0025631:12619-12638 | Msa1424090:CDS | 30.0% | |
| ! | ATGTGAATGTAAAGGCATAA+AGG | - | tig0025631:12715-12734 | Msa1424090:five_prime_UTR | 30.0% |
| ! | TTTTCCAATTATAGTTAGGG+AGG | + | tig0025631:12798-12817 | None:intergenic | 30.0% |
| TGTACCACTATATAAGCAAT+AGG | - | tig0025631:12854-12873 | Msa1424090:five_prime_UTR | 30.0% | |
| GTACCACTATATAAGCAATA+GGG | - | tig0025631:12855-12874 | Msa1424090:five_prime_UTR | 30.0% | |
| ATACCCTATTGCTTATATAG+TGG | + | tig0025631:12861-12880 | None:intergenic | 30.0% | |
| AGAGAAGAAATGTGTGTGTA+TGG | + | tig0025631:10297-10316 | None:intergenic | 35.0% | |
| TACACACACATTTCTTCTCT+TGG | - | tig0025631:10297-10316 | Msa1424090:three_prime_UTR | 35.0% | |
| ! | CAATGGTTTTTGTCTTGAGA+AGG | + | tig0025631:10430-10449 | None:intergenic | 35.0% |
| CTTCTCAAGACAAAAACCAT+TGG | - | tig0025631:10428-10447 | Msa1424090:three_prime_UTR | 35.0% | |
| ATGAAAACAAGATCCACCAA+TGG | + | tig0025631:10480-10499 | None:intergenic | 35.0% | |
| GTAAAACATTGTGATTGGAG+AGG | + | tig0025631:10554-10573 | None:intergenic | 35.0% | |
| ! | CTTGTGTCAAATGGTTTTTG+TGG | - | tig0025631:10655-10674 | Msa1424090:CDS | 35.0% |
| TTGGCATCAAAATTTGAGCA+TGG | - | tig0025631:10781-10800 | Msa1424090:intron | 35.0% | |
| ATTTGAGCATGGAGAAAAAG+AGG | - | tig0025631:10792-10811 | Msa1424090:intron | 35.0% | |
| GGATTTGCATGATTTACCAT+TGG | - | tig0025631:10834-10853 | Msa1424090:intron | 35.0% | |
| ACCTAGTGAATTATGCAATG+TGG | - | tig0025631:10879-10898 | Msa1424090:intron | 35.0% | |
| ACAAGTGTGCAAATCTCTTA+GGG | - | tig0025631:10903-10922 | Msa1424090:CDS | 35.0% | |
| ! | ATGAAATGGGGCAAAGTTTT+AGG | - | tig0025631:10967-10986 | Msa1424090:intron | 35.0% |
| GTGATTCTGCTTATAGACAA+TGG | - | tig0025631:10989-11008 | Msa1424090:intron | 35.0% | |
| ACAATACTTGCTTTCCTTCA+TGG | - | tig0025631:11072-11091 | Msa1424090:intron | 35.0% | |
| AGAAAGGAAGAAAACCATGA+AGG | + | tig0025631:11089-11108 | None:intergenic | 35.0% | |
| TACCTCACGGTTATAAACTT+GGG | + | tig0025631:11214-11233 | None:intergenic | 35.0% | |
| TTACCTCACGGTTATAAACT+TGG | + | tig0025631:11215-11234 | None:intergenic | 35.0% | |
| TATAACCGTGAGGTAAATAC+TGG | - | tig0025631:11219-11238 | Msa1424090:intron | 35.0% | |
| !! | AGGTAAAAAGACAAGTTGGT+TGG | + | tig0025631:11503-11522 | None:intergenic | 35.0% |
| GTACAGGTAAAAAGACAAGT+TGG | + | tig0025631:11507-11526 | None:intergenic | 35.0% | |
| ! | TACCTGTACTATTGTCCTTT+TGG | - | tig0025631:11518-11537 | Msa1424090:intron | 35.0% |
| AACCAAAAGGACAATAGTAC+AGG | + | tig0025631:11523-11542 | None:intergenic | 35.0% | |
| !!! | GTTAGTTTTAGTGTTGTGCA+CGG | + | tig0025631:11587-11606 | None:intergenic | 35.0% |
| !! | ACTTCAAATCGAAAGCATTC+CGG | + | tig0025631:11693-11712 | None:intergenic | 35.0% |
| ! | AAGTTCATGTTTTCTCTGAC+AGG | - | tig0025631:11815-11834 | Msa1424090:CDS | 35.0% |
| ACATGTGAAGAAGAGTCAAT+AGG | + | tig0025631:11904-11923 | None:intergenic | 35.0% | |
| TGAATTTCAACATGATCTCC+AGG | + | tig0025631:11961-11980 | None:intergenic | 35.0% | |
| GAGATCATGTTGAAATTCAG+TGG | - | tig0025631:11962-11981 | Msa1424090:intron | 35.0% | |
| AGAAACAATGAGTTCCCTTA+TGG | - | tig0025631:11988-12007 | Msa1424090:intron | 35.0% | |
| CTATGATGAGACATACCATA+AGG | + | tig0025631:12006-12025 | None:intergenic | 35.0% | |
| TTTACGCGACTATTTAGAAG+AGG | + | tig0025631:12070-12089 | None:intergenic | 35.0% | |
| ! | GTATAGTGTCATTGGTCATT+TGG | - | tig0025631:12299-12318 | Msa1424090:CDS | 35.0% |
| TTGGAAACATGTCAAAGTGA+TGG | - | tig0025631:12318-12337 | Msa1424090:CDS | 35.0% | |
| TGGAAACATGTCAAAGTGAT+GGG | - | tig0025631:12319-12338 | Msa1424090:CDS | 35.0% | |
| CTTTATTGTGACATTGGCAA+TGG | + | tig0025631:12347-12366 | None:intergenic | 35.0% | |
| CATTGCCAATGTCACAATAA+AGG | - | tig0025631:12345-12364 | Msa1424090:CDS | 35.0% | |
| AATCAGAAAGTTGCATAGCA+AGG | - | tig0025631:12590-12609 | Msa1424090:CDS | 35.0% | |
| ATTCTTGCATGGACATAGTT+AGG | + | tig0025631:12774-12793 | None:intergenic | 35.0% | |
| AATGCCTCCCTAACTATAAT+TGG | - | tig0025631:12791-12810 | Msa1424090:five_prime_UTR | 35.0% | |
| AAATGTGTGTGTATGGTCAG+TGG | + | tig0025631:10290-10309 | None:intergenic | 40.0% | |
| ! | TAGTGGTTTGGCAAAACCAA+TGG | + | tig0025631:10447-10466 | None:intergenic | 40.0% |
| TTTGTCCCAATTGATGAGAG+TGG | + | tig0025631:10634-10653 | None:intergenic | 40.0% | |
| GGGACAAAACTTGTGTCAAA+TGG | - | tig0025631:10646-10665 | Msa1424090:CDS | 40.0% | |
| !!! | TTGTTTTGAGCCTAGAAGCT+AGG | + | tig0025631:10696-10715 | None:intergenic | 40.0% |
| GCCACATTGCATAATTCACT+AGG | + | tig0025631:10883-10902 | None:intergenic | 40.0% | |
| CACAAGTGTGCAAATCTCTT+AGG | - | tig0025631:10902-10921 | Msa1424090:CDS | 40.0% | |
| TGCAACCAGTATTTACCTCA+CGG | + | tig0025631:11227-11246 | None:intergenic | 40.0% | |
| !! | TACTGGTTGCATGCAGATTT+TGG | - | tig0025631:11236-11255 | Msa1424090:intron | 40.0% |
| ! | CATTTTCAGAATGGTCATGC+TGG | - | tig0025631:11367-11386 | Msa1424090:CDS | 40.0% |
| GAACAGATACCTTTCAAGCA+AGG | - | tig0025631:11434-11453 | Msa1424090:intron | 40.0% | |
| TTGCACATACCTTGCTTGAA+AGG | + | tig0025631:11446-11465 | None:intergenic | 40.0% | |
| !! | CATGTGTTGGTAACATGTGT+TGG | - | tig0025631:11658-11677 | Msa1424090:intron | 40.0% |
| !! | TTTGAAGTGTCGTGCTACAT+AGG | - | tig0025631:11705-11724 | Msa1424090:intron | 40.0% |
| TGTGAAGAAGAGTCAATAGG+TGG | + | tig0025631:11901-11920 | None:intergenic | 40.0% | |
| TGCTTAGATGACTTAAAGCC+TGG | - | tig0025631:11940-11959 | Msa1424090:intron | 40.0% | |
| TGTGTGAACTCCAAAATCAC+TGG | + | tig0025631:12480-12499 | None:intergenic | 40.0% | |
| GGAAGATGAGACTAGTGGTT+TGG | + | tig0025631:10459-10478 | None:intergenic | 45.0% | |
| CCAATGGAAGATGAGACTAG+TGG | + | tig0025631:10464-10483 | None:intergenic | 45.0% | |
| ! | CCACTAGTCTCATCTTCCAT+TGG | - | tig0025631:10461-10480 | Msa1424090:intron | 45.0% |
| CTAGTCTCATCTTCCATTGG+TGG | - | tig0025631:10464-10483 | Msa1424090:intron | 45.0% | |
| GGAAGAGAAAGCTTCTCTCT+TGG | - | tig0025631:10813-10832 | Msa1424090:intron | 45.0% | |
| AGAGCAGCAATTGAGTCATC+TGG | + | tig0025631:11153-11172 | None:intergenic | 45.0% | |
| CACGGTTATAAACTTGGGCA+GGG | + | tig0025631:11209-11228 | None:intergenic | 45.0% | |
| TCACGGTTATAAACTTGGGC+AGG | + | tig0025631:11210-11229 | None:intergenic | 45.0% | |
| TGCCCAAGTTTATAACCGTG+AGG | - | tig0025631:11209-11228 | Msa1424090:intron | 45.0% | |
| TCAGTTGTCCATCTTCCATG+AGG | + | tig0025631:11847-11866 | None:intergenic | 45.0% | |
| TCATGGAAGATGGACAACTG+AGG | - | tig0025631:11846-11865 | Msa1424090:CDS | 45.0% | |
| !! | GGTTGGTGGTATAGTGTCAT+TGG | - | tig0025631:12291-12310 | Msa1424090:CDS | 45.0% |
| ! | GGTGACAGATCCAGTGATTT+TGG | - | tig0025631:12467-12486 | Msa1424090:CDS | 45.0% |
| GAGTTCACACAATACACAGC+TGG | - | tig0025631:12489-12508 | Msa1424090:CDS | 45.0% | |
| ! | AATACACAGCTGGCTCAAGA+TGG | - | tig0025631:12499-12518 | Msa1424090:CDS | 45.0% |
| CAGAAAGTTGCATAGCAAGG+AGG | - | tig0025631:12593-12612 | Msa1424090:CDS | 45.0% | |
| GCAAGGAGGAGATTACAAAG+TGG | - | tig0025631:12607-12626 | Msa1424090:CDS | 45.0% | |
| AGTGGAAGGCAGCTGTTATG+TGG | + | tig0025631:10272-10291 | None:intergenic | 50.0% | |
| GTGTGTGTATGGTCAGTGGA+AGG | + | tig0025631:10286-10305 | None:intergenic | 50.0% | |
| ! | CATGTGTTGGTGTCTGACAC+CGG | - | tig0025631:11671-11690 | Msa1424090:intron | 50.0% |
| TCTGACAGGTACTCTCCTCA+TGG | - | tig0025631:11829-11848 | Msa1424090:CDS | 50.0% | |
| GGTACTCTCCTCATGGAAGA+TGG | - | tig0025631:11836-11855 | Msa1424090:CDS | 50.0% | |
| !! | GTTAGGGAGGCATTCTTGCA+TGG | + | tig0025631:12785-12804 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025631 | gene | 10266 | 12990 | 10266 | ID=Msa1424090;Name=Msa1424090 |
| tig0025631 | mRNA | 10266 | 12990 | 10266 | ID=Msa1424090-mRNA-1;Parent=Msa1424090;Name=Msa1424090-mRNA-1;_AED=0.06;_eAED=0.06;_QI=299|1|1|1|0.8|0.66|6|306|393 |
| tig0025631 | exon | 10266 | 10448 | 10266 | ID=Msa1424090-mRNA-1:exon:3611;Parent=Msa1424090-mRNA-1 |
| tig0025631 | exon | 10471 | 10781 | 10471 | ID=Msa1424090-mRNA-1:exon:3610;Parent=Msa1424090-mRNA-1 |
| tig0025631 | exon | 10890 | 10964 | 10890 | ID=Msa1424090-mRNA-1:exon:3609;Parent=Msa1424090-mRNA-1 |
| tig0025631 | exon | 11247 | 11419 | 11247 | ID=Msa1424090-mRNA-1:exon:3608;Parent=Msa1424090-mRNA-1 |
| tig0025631 | exon | 11801 | 11880 | 11801 | ID=Msa1424090-mRNA-1:exon:3607;Parent=Msa1424090-mRNA-1 |
| tig0025631 | exon | 12026 | 12990 | 12026 | ID=Msa1424090-mRNA-1:exon:3606;Parent=Msa1424090-mRNA-1 |
| tig0025631 | five_prime_UTR | 12692 | 12990 | 12692 | ID=Msa1424090-mRNA-1:five_prime_utr;Parent=Msa1424090-mRNA-1 |
| tig0025631 | CDS | 12026 | 12691 | 12026 | ID=Msa1424090-mRNA-1:cds;Parent=Msa1424090-mRNA-1 |
| tig0025631 | CDS | 11801 | 11880 | 11801 | ID=Msa1424090-mRNA-1:cds;Parent=Msa1424090-mRNA-1 |
| tig0025631 | CDS | 11247 | 11419 | 11247 | ID=Msa1424090-mRNA-1:cds;Parent=Msa1424090-mRNA-1 |
| tig0025631 | CDS | 10890 | 10964 | 10890 | ID=Msa1424090-mRNA-1:cds;Parent=Msa1424090-mRNA-1 |
| tig0025631 | CDS | 10594 | 10781 | 10594 | ID=Msa1424090-mRNA-1:cds;Parent=Msa1424090-mRNA-1 |
| tig0025631 | three_prime_UTR | 10471 | 10593 | 10471 | ID=Msa1424090-mRNA-1:three_prime_utr;Parent=Msa1424090-mRNA-1 |
| tig0025631 | three_prime_UTR | 10266 | 10448 | 10266 | ID=Msa1424090-mRNA-1:three_prime_utr;Parent=Msa1424090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
