AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1073310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073310 MtrunA17_Chr7g0256341 97.992 249 4 1 1 248 1 249 0.0 504
Msa1073310 MtrunA17_Chr5g0406301 45.181 166 91 0 56 221 20 185 9.01e-55 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1073310 AT3G10210.1 69.198 237 70 2 4 238 2 237 9.80e-117 333
Msa1073310 AT4G35750.1 45.455 198 108 0 38 235 2 199 1.99e-59 187
Msa1073310 AT1G69340.1 25.882 170 121 4 32 199 374 540 3.44e-12 66.2
Msa1073310 AT1G69340.2 25.882 170 121 4 32 199 374 540 3.44e-12 66.2

Find 92 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAAGCATGATGATATTT+TGG 0.180310 7_2:-70765563 Msa1073310:CDS
CCTCTTCTTCTTGCTGTTCA+TGG 0.184887 7_2:+70766875 None:intergenic
AGATCTTCCAGATGAATTTA+AGG 0.194706 7_2:-70765984 Msa1073310:CDS
TCCACCCTGGGCTTCGTTCC+AGG 0.224124 7_2:-70765937 Msa1073310:CDS
AATAGGCCACTCACTGATTA+TGG 0.278886 7_2:-70765538 Msa1073310:CDS
GTGGGTGTGGCCGTGTGGAT+AGG 0.318051 7_2:+70767012 None:intergenic
GATCTTTGTTTAGATTATAT+TGG 0.322681 7_2:-70765663 Msa1073310:intron
TGGGTGTGGCCGTGTGGATA+GGG 0.333931 7_2:+70767013 None:intergenic
TGCACGTAAACGATGCAAAA+TGG 0.346344 7_2:+70766067 None:intergenic
TGTGCATATACTTGCCCCTT+TGG 0.353391 7_2:-70765189 Msa1073310:three_prime_UTR
CTCTGTGTTATTTACTGTGC+AGG 0.357663 7_2:+70766989 None:intergenic
CCTTCAGTTGCATACTCGTT+TGG 0.359573 7_2:-70765481 Msa1073310:CDS
CCCGACCCCTTTCACTTGAC+TGG 0.361568 7_2:-70765508 Msa1073310:CDS
GTGCATATACTTGCCCCTTT+GGG 0.384172 7_2:-70765188 Msa1073310:three_prime_UTR
AGCCTGTCCTTAAATTCATC+TGG 0.389216 7_2:+70765977 None:intergenic
TAAGCCGCCTTCAGTACCTT+TGG 0.400237 7_2:-70765627 Msa1073310:CDS
ATACATCTTTGAATATTCAT+TGG 0.407908 7_2:-70765215 Msa1073310:three_prime_UTR
CTTCTTGCTGTTCATGGAGA+AGG 0.417496 7_2:+70766881 None:intergenic
ACGATGCAAAATGGCCCATC+TGG 0.420128 7_2:+70766076 None:intergenic
AAGTATGAAGAGAGATGGGC+AGG 0.422356 7_2:-70765457 Msa1073310:CDS
ACAAGCCTGGAACGAAGCCC+AGG 0.422750 7_2:+70765932 None:intergenic
AGGCTTGTCATGGCTACTCT+TGG 0.428020 7_2:-70765917 Msa1073310:CDS
GGGTGTGGCCGTGTGGATAG+GGG 0.431076 7_2:+70767014 None:intergenic
ACGAATGAGGATAATTCTCC+TGG 0.432791 7_2:-70766034 Msa1073310:CDS
ATGAAGAGAGATGGGCAGGA+AGG 0.433561 7_2:-70765453 Msa1073310:CDS
TTGTCATGGCTACTCTTGGC+AGG 0.435525 7_2:-70765913 Msa1073310:CDS
AAGCCGCCTTCAGTACCTTT+GGG 0.439554 7_2:-70765626 Msa1073310:CDS
GGCATCCCAGTCAAGTGAAA+GGG 0.475353 7_2:+70765502 None:intergenic
CCGACCCCTTTCACTTGACT+GGG 0.497649 7_2:-70765507 Msa1073310:CDS
AAGAGTAGCCATGACAAGCC+TGG 0.504024 7_2:+70765919 None:intergenic
CACACAGCTTTATACCCAAA+GGG 0.504749 7_2:+70765174 None:intergenic
TTCCAGATGAATTTAAGGAC+AGG 0.506244 7_2:-70765979 Msa1073310:CDS
CATAACATGTAGTCACGTAC+AGG 0.509444 7_2:+70765296 None:intergenic
CTTTGTACTTCATCCACCCT+GGG 0.512403 7_2:-70765949 Msa1073310:CDS
GCTTCGTTCCAGGCTTGTCA+TGG 0.516062 7_2:-70765927 Msa1073310:CDS
CCCAGTCAAGTGAAAGGGGT+CGG 0.517168 7_2:+70765507 None:intergenic
AAGGAAAGGTCGGGCATCGA+CGG 0.519151 7_2:+70766900 None:intergenic
TCTGTGTTATTTACTGTGCA+GGG 0.519613 7_2:+70766990 None:intergenic
AGATCGGAGAAGTCTTCGTC+GGG 0.520373 7_2:+70766823 None:intergenic
TTACAATTCTTCACTCTCCA+AGG 0.520897 7_2:-70766793 Msa1073310:CDS
CCAGTCAAGTGAAAGGGGTC+GGG 0.521707 7_2:+70765508 None:intergenic
TTTACTGTGCAGGGTGGGTG+TGG 0.528704 7_2:+70766999 None:intergenic
TTGGAAAGTATGAAGAGAGA+TGG 0.530944 7_2:-70765462 Msa1073310:CDS
CTTTGGGATGATATAAAGAA+AGG 0.533094 7_2:-70765610 Msa1073310:CDS
TGTTATTTACTGTGCAGGGT+GGG 0.535219 7_2:+70766994 None:intergenic
TGAAGAGAGATGGGCAGGAA+GGG 0.538035 7_2:-70765452 Msa1073310:CDS
CACCTCAAGATTGTCATCCC+AGG 0.540229 7_2:+70766016 None:intergenic
CCATGAACAGCAAGAAGAAG+AGG 0.542131 7_2:-70766875 Msa1073310:CDS
TGCTGTTCATGGAGAAGGAA+AGG 0.547148 7_2:+70766886 None:intergenic
AGAAGTCTTCGTCGGGAGAG+AGG 0.547729 7_2:+70766830 None:intergenic
AACAGCAAGAAGAAGAGGAT+TGG 0.548513 7_2:-70766870 Msa1073310:CDS
CTCAGTGGTGGTCCTAGCAT+CGG 0.550386 7_2:-70766929 Msa1073310:CDS
CGACGGCGAGATCCGATGCT+AGG 0.557306 7_2:+70766917 None:intergenic
GCACAGCACTGTTACGAATG+AGG 0.569439 7_2:-70766047 Msa1073310:CDS
TGAGTGCAGAGCGGCTGAAG+AGG 0.572893 7_2:-70766129 Msa1073310:CDS
GTTCATGGAGAAGGAAAGGT+CGG 0.577646 7_2:+70766890 None:intergenic
CTTTCTTTATATCATCCCAA+AGG 0.578331 7_2:+70765611 None:intergenic
ACTTTGTACTTCATCCACCC+TGG 0.579241 7_2:-70765950 Msa1073310:CDS
TGGAAAGTATGAAGAGAGAT+GGG 0.582285 7_2:-70765461 Msa1073310:CDS
ACTCGCATTCTCCGCATCGT+TGG 0.583897 7_2:-70766754 Msa1073310:CDS
CACATTGACCCCTATCCACA+CGG 0.584209 7_2:-70767022 None:intergenic
TTATTCAGTGAGTTACCAGA+TGG 0.588230 7_2:-70766091 Msa1073310:CDS
AGGCATCCCAGTCAAGTGAA+AGG 0.589065 7_2:+70765501 None:intergenic
TATCATCCCAAAGGTACTGA+AGG 0.594807 7_2:+70765620 None:intergenic
GCACACAGCTTTATACCCAA+AGG 0.597133 7_2:+70765173 None:intergenic
ATCGGAGGAATTCTCAGTGG+TGG 0.599361 7_2:-70766941 Msa1073310:CDS
CTGGGATGACAATCTTGAGG+TGG 0.602184 7_2:-70766015 Msa1073310:CDS
GTGTTATTTACTGTGCAGGG+TGG 0.602764 7_2:+70766993 None:intergenic
CTCCTGGGATGACAATCTTG+AGG 0.605207 7_2:-70766018 Msa1073310:CDS
TTCATGGAGAAGGAAAGGTC+GGG 0.605657 7_2:+70766891 None:intergenic
ATCGTTGGAAAACACTATCC+CGG 0.608247 7_2:-70766739 Msa1073310:intron
GCAGGGTGGGTGTGGCCGTG+TGG 0.609219 7_2:+70767007 None:intergenic
CAAGCCTGGAACGAAGCCCA+GGG 0.612500 7_2:+70765933 None:intergenic
GAGATCGGAGAAGTCTTCGT+CGG 0.619875 7_2:+70766822 None:intergenic
TTAGGTACGCTGTACACAAG+TGG 0.623584 7_2:+70765385 None:intergenic
GAATTGTAAGAATTCGAGAT+CGG 0.623968 7_2:+70766807 None:intergenic
CGAATGAGGATAATTCTCCT+GGG 0.628036 7_2:-70766033 Msa1073310:CDS
AAAGGCGGCGATGAGTTCAT+CGG 0.629506 7_2:-70766959 Msa1073310:exon
GCATCCCAGTCAAGTGAAAG+GGG 0.635454 7_2:+70765503 None:intergenic
CATCCCAAAGGTACTGAAGG+CGG 0.635715 7_2:+70765623 None:intergenic
CCAAACGAGTATGCAACTGA+AGG 0.637348 7_2:+70765481 None:intergenic
ATAACATGTAGTCACGTACA+GGG 0.651104 7_2:+70765297 None:intergenic
TATTCAGTGAGTTACCAGAT+GGG 0.652106 7_2:-70766090 Msa1073310:CDS
CCAACAATAGATAGCATGCA+CGG 0.656060 7_2:+70765151 None:intergenic
TCAATTCCATAATCAGTGAG+TGG 0.666908 7_2:+70765532 None:intergenic
GCCTGGAACGAAGCCCAGGG+TGG 0.672073 7_2:+70765936 None:intergenic
ACACAGAGAGATAGCAAAGG+CGG 0.679950 7_2:-70766974 Msa1073310:five_prime_UTR
GGCGGCGATGAGTTCATCGG+AGG 0.685686 7_2:-70766956 Msa1073310:exon
ACACAGCTTTATACCCAAAG+GGG 0.695191 7_2:+70765175 None:intergenic
CAACAGTTGTGAGTGCAGAG+CGG 0.698313 7_2:-70766138 Msa1073310:CDS
ATAACACAGAGAGATAGCAA+AGG 0.714270 7_2:-70766977 Msa1073310:five_prime_UTR
TTCATCGGAGGAATTCTCAG+TGG 0.740829 7_2:-70766944 Msa1073310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATAAAAAATTATACATT+GGG + chr7_2:70766456-70766475 None:intergenic 10.0%
!! AAACATAAAAAATTATACAT+TGG + chr7_2:70766457-70766476 None:intergenic 10.0%
!! AACATAAAAAATTATACATT+GGG + chr7_2:70766456-70766475 None:intergenic 10.0%
!! AAACATAAAAAATTATACAT+TGG + chr7_2:70766457-70766476 None:intergenic 10.0%
!! TTCAGAATTTCATATTATAG+CGG - chr7_2:70765506-70765525 Msa1073310:CDS 20.0%
!! AGTGCTTATGTATAAATTAT+GGG + chr7_2:70765627-70765646 None:intergenic 20.0%
!! AAGTGCTTATGTATAAATTA+TGG + chr7_2:70765628-70765647 None:intergenic 20.0%
!!! TGATTTTTGTACAACAAATT+CGG + chr7_2:70765786-70765805 None:intergenic 20.0%
!! GATCATGTTAAACATAATTT+AGG - chr7_2:70765817-70765836 Msa1073310:intron 20.0%
!!! CAATTTTCTTATTTGAACAA+AGG + chr7_2:70765892-70765911 None:intergenic 20.0%
!!! TTAAGTTTAAATTTTCTCTC+TGG + chr7_2:70765916-70765935 None:intergenic 20.0%
!! ATTAATAAAGAACAGTTTCT+AGG + chr7_2:70765971-70765990 None:intergenic 20.0%
!! ATTAATTCTATCTCTTATGT+TGG - chr7_2:70765985-70766004 Msa1073310:CDS 20.0%
!! ATGAAAATATAGATGCAAAA+AGG + chr7_2:70766419-70766438 None:intergenic 20.0%
!! ATAAAAAATTATACATTGGG+TGG + chr7_2:70766453-70766472 None:intergenic 20.0%
!!! GATCTTTGTTTAGATTATAT+TGG - chr7_2:70766508-70766527 Msa1073310:intron 20.0%
!!! ATACAAACACATGATATTTT+AGG + chr7_2:70766807-70766826 None:intergenic 20.0%
!! ATACATCTTTGAATATTCAT+TGG - chr7_2:70766956-70766975 Msa1073310:exon 20.0%
!! TTCAGAATTTCATATTATAG+CGG - chr7_2:70765506-70765525 Msa1073310:CDS 20.0%
!! AGTGCTTATGTATAAATTAT+GGG + chr7_2:70765627-70765646 None:intergenic 20.0%
!! AAGTGCTTATGTATAAATTA+TGG + chr7_2:70765628-70765647 None:intergenic 20.0%
!!! TGATTTTTGTACAACAAATT+CGG + chr7_2:70765786-70765805 None:intergenic 20.0%
!! GATCATGTTAAACATAATTT+AGG - chr7_2:70765817-70765836 Msa1073310:intron 20.0%
!!! CAATTTTCTTATTTGAACAA+AGG + chr7_2:70765892-70765911 None:intergenic 20.0%
!!! TTAAGTTTAAATTTTCTCTC+TGG + chr7_2:70765916-70765935 None:intergenic 20.0%
!! ATTAATAAAGAACAGTTTCT+AGG + chr7_2:70765971-70765990 None:intergenic 20.0%
!! ATTAATTCTATCTCTTATGT+TGG - chr7_2:70765985-70766004 Msa1073310:CDS 20.0%
!! ATGAAAATATAGATGCAAAA+AGG + chr7_2:70766419-70766438 None:intergenic 20.0%
!! ATAAAAAATTATACATTGGG+TGG + chr7_2:70766453-70766472 None:intergenic 20.0%
!!! GATCTTTGTTTAGATTATAT+TGG - chr7_2:70766508-70766527 Msa1073310:intron 20.0%
!!! ATACAAACACATGATATTTT+AGG + chr7_2:70766807-70766826 None:intergenic 20.0%
!! ATACATCTTTGAATATTCAT+TGG - chr7_2:70766956-70766975 Msa1073310:exon 20.0%
! TTGTTACGATAATTATGGTT+AGG - chr7_2:70765529-70765548 Msa1073310:CDS 25.0%
! GTGCTTATGTATAAATTATG+GGG + chr7_2:70765626-70765645 None:intergenic 25.0%
! AAAATTTAAACTTAAACCCC+TGG - chr7_2:70765921-70765940 Msa1073310:CDS 25.0%
!!! AAGCATCGAATGAAATTATA+TGG - chr7_2:70766364-70766383 Msa1073310:intron 25.0%
!!! ACAAAAGCATGATGATATTT+TGG - chr7_2:70766608-70766627 Msa1073310:intron 25.0%
!!! ATGATGATATTTTGGAGAAT+AGG - chr7_2:70766616-70766635 Msa1073310:intron 25.0%
! TTGTTACGATAATTATGGTT+AGG - chr7_2:70765529-70765548 Msa1073310:CDS 25.0%
! GTGCTTATGTATAAATTATG+GGG + chr7_2:70765626-70765645 None:intergenic 25.0%
! AAAATTTAAACTTAAACCCC+TGG - chr7_2:70765921-70765940 Msa1073310:CDS 25.0%
!!! AAGCATCGAATGAAATTATA+TGG - chr7_2:70766364-70766383 Msa1073310:intron 25.0%
!!! ACAAAAGCATGATGATATTT+TGG - chr7_2:70766608-70766627 Msa1073310:intron 25.0%
!!! ATGATGATATTTTGGAGAAT+AGG - chr7_2:70766616-70766635 Msa1073310:intron 25.0%
GAATTGTAAGAATTCGAGAT+CGG + chr7_2:70765367-70765386 None:intergenic 30.0%
! ATCAAGTTGTTTATCCAAAC+AGG - chr7_2:70765680-70765699 Msa1073310:intron 30.0%
! TCAAGTTGTTTATCCAAACA+GGG - chr7_2:70765681-70765700 Msa1073310:intron 30.0%
ATAAAACTAAAAGCCCTGTT+TGG + chr7_2:70765697-70765716 None:intergenic 30.0%
TAAACATAATTTAGGCCTCT+TGG - chr7_2:70765825-70765844 Msa1073310:intron 30.0%
TAATGTTGATCATATTGCCA+GGG + chr7_2:70765941-70765960 None:intergenic 30.0%
ATAATGTTGATCATATTGCC+AGG + chr7_2:70765942-70765961 None:intergenic 30.0%
!! GCTGCATATGATTTTAAAGA+AGG + chr7_2:70766014-70766033 None:intergenic 30.0%
AGATCTTCCAGATGAATTTA+AGG - chr7_2:70766187-70766206 Msa1073310:intron 30.0%
TTCTTAGCAGAAATGTTTAG+AGG - chr7_2:70766315-70766334 Msa1073310:intron 30.0%
TTTCATTCGATGCTTAACAT+AGG + chr7_2:70766359-70766378 None:intergenic 30.0%
CTTTCTTTATATCATCCCAA+AGG + chr7_2:70766563-70766582 None:intergenic 30.0%
!! CTTTGGGATGATATAAAGAA+AGG - chr7_2:70766561-70766580 Msa1073310:intron 30.0%
! TCATGCTTTTGTACAAATTC+TGG + chr7_2:70766600-70766619 None:intergenic 30.0%
GAATTGTAAGAATTCGAGAT+CGG + chr7_2:70765367-70765386 None:intergenic 30.0%
! ATCAAGTTGTTTATCCAAAC+AGG - chr7_2:70765680-70765699 Msa1073310:intron 30.0%
! TCAAGTTGTTTATCCAAACA+GGG - chr7_2:70765681-70765700 Msa1073310:intron 30.0%
ATAAAACTAAAAGCCCTGTT+TGG + chr7_2:70765697-70765716 None:intergenic 30.0%
TAAACATAATTTAGGCCTCT+TGG - chr7_2:70765825-70765844 Msa1073310:intron 30.0%
TAATGTTGATCATATTGCCA+GGG + chr7_2:70765941-70765960 None:intergenic 30.0%
ATAATGTTGATCATATTGCC+AGG + chr7_2:70765942-70765961 None:intergenic 30.0%
!! GCTGCATATGATTTTAAAGA+AGG + chr7_2:70766014-70766033 None:intergenic 30.0%
AGATCTTCCAGATGAATTTA+AGG - chr7_2:70766187-70766206 Msa1073310:intron 30.0%
TTCTTAGCAGAAATGTTTAG+AGG - chr7_2:70766315-70766334 Msa1073310:intron 30.0%
TTTCATTCGATGCTTAACAT+AGG + chr7_2:70766359-70766378 None:intergenic 30.0%
CTTTCTTTATATCATCCCAA+AGG + chr7_2:70766563-70766582 None:intergenic 30.0%
!! CTTTGGGATGATATAAAGAA+AGG - chr7_2:70766561-70766580 Msa1073310:intron 30.0%
! TCATGCTTTTGTACAAATTC+TGG + chr7_2:70766600-70766619 None:intergenic 30.0%
!! TCTGTGTTATTTACTGTGCA+GGG + chr7_2:70765184-70765203 None:intergenic 35.0%
ATAACACAGAGAGATAGCAA+AGG - chr7_2:70765194-70765213 Msa1073310:three_prime_UTR 35.0%
TTACAATTCTTCACTCTCCA+AGG - chr7_2:70765378-70765397 Msa1073310:three_prime_UTR 35.0%
CTCCAAGGAACTGATAAAAA+CGG - chr7_2:70765393-70765412 Msa1073310:three_prime_UTR 35.0%
AGCGGTTGTTACGATAATTA+TGG - chr7_2:70765524-70765543 Msa1073310:CDS 35.0%
GTATAAATTATGGGGACGTT+TGG + chr7_2:70765618-70765637 None:intergenic 35.0%
AATGTTGATCATATTGCCAG+GGG + chr7_2:70765940-70765959 None:intergenic 35.0%
TTATTCAGTGAGTTACCAGA+TGG - chr7_2:70766080-70766099 Msa1073310:CDS 35.0%
TATTCAGTGAGTTACCAGAT+GGG - chr7_2:70766081-70766100 Msa1073310:CDS 35.0%
TTCCAGATGAATTTAAGGAC+AGG - chr7_2:70766192-70766211 Msa1073310:intron 35.0%
AATACAGTTGCGAACAGTAA+TGG - chr7_2:70766393-70766412 Msa1073310:intron 35.0%
TCAATTCCATAATCAGTGAG+TGG + chr7_2:70766642-70766661 None:intergenic 35.0%
! TTGGAAAGTATGAAGAGAGA+TGG - chr7_2:70766709-70766728 Msa1073310:intron 35.0%
! TGGAAAGTATGAAGAGAGAT+GGG - chr7_2:70766710-70766729 Msa1073310:intron 35.0%
ATAACATGTAGTCACGTACA+GGG + chr7_2:70766877-70766896 None:intergenic 35.0%
!! TCTGTGTTATTTACTGTGCA+GGG + chr7_2:70765184-70765203 None:intergenic 35.0%
ATAACACAGAGAGATAGCAA+AGG - chr7_2:70765194-70765213 Msa1073310:three_prime_UTR 35.0%
TTACAATTCTTCACTCTCCA+AGG - chr7_2:70765378-70765397 Msa1073310:three_prime_UTR 35.0%
CTCCAAGGAACTGATAAAAA+CGG - chr7_2:70765393-70765412 Msa1073310:three_prime_UTR 35.0%
AGCGGTTGTTACGATAATTA+TGG - chr7_2:70765524-70765543 Msa1073310:CDS 35.0%
GTATAAATTATGGGGACGTT+TGG + chr7_2:70765618-70765637 None:intergenic 35.0%
AATGTTGATCATATTGCCAG+GGG + chr7_2:70765940-70765959 None:intergenic 35.0%
TTATTCAGTGAGTTACCAGA+TGG - chr7_2:70766080-70766099 Msa1073310:CDS 35.0%
TATTCAGTGAGTTACCAGAT+GGG - chr7_2:70766081-70766100 Msa1073310:CDS 35.0%
TTCCAGATGAATTTAAGGAC+AGG - chr7_2:70766192-70766211 Msa1073310:intron 35.0%
AATACAGTTGCGAACAGTAA+TGG - chr7_2:70766393-70766412 Msa1073310:intron 35.0%
TCAATTCCATAATCAGTGAG+TGG + chr7_2:70766642-70766661 None:intergenic 35.0%
! TTGGAAAGTATGAAGAGAGA+TGG - chr7_2:70766709-70766728 Msa1073310:intron 35.0%
! TGGAAAGTATGAAGAGAGAT+GGG - chr7_2:70766710-70766729 Msa1073310:intron 35.0%
ATAACATGTAGTCACGTACA+GGG + chr7_2:70766877-70766896 None:intergenic 35.0%
! TGTTATTTACTGTGCAGGGT+GGG + chr7_2:70765180-70765199 None:intergenic 40.0%
!! CTCTGTGTTATTTACTGTGC+AGG + chr7_2:70765185-70765204 None:intergenic 40.0%
AACAGCAAGAAGAAGAGGAT+TGG - chr7_2:70765301-70765320 Msa1073310:three_prime_UTR 40.0%
!!! TGCCGTTTTTATCAGTTCCT+TGG + chr7_2:70765398-70765417 None:intergenic 40.0%
! GATAGTGTTTTCCAACGATG+CGG + chr7_2:70765431-70765450 None:intergenic 40.0%
ATCGTTGGAAAACACTATCC+CGG - chr7_2:70765432-70765451 Msa1073310:CDS 40.0%
TGCACGTAAACGATGCAAAA+TGG + chr7_2:70766107-70766126 None:intergenic 40.0%
ACGAATGAGGATAATTCTCC+TGG - chr7_2:70766137-70766156 Msa1073310:CDS 40.0%
CGAATGAGGATAATTCTCCT+GGG - chr7_2:70766138-70766157 Msa1073310:CDS 40.0%
AGCCTGTCCTTAAATTCATC+TGG + chr7_2:70766197-70766216 None:intergenic 40.0%
!! TATCATCCCAAAGGTACTGA+AGG + chr7_2:70766554-70766573 None:intergenic 40.0%
! AATAGGCCACTCACTGATTA+TGG - chr7_2:70766633-70766652 Msa1073310:intron 40.0%
CATAACATGTAGTCACGTAC+AGG + chr7_2:70766878-70766897 None:intergenic 40.0%
! ACACAGCTTTATACCCAAAG+GGG + chr7_2:70766999-70767018 None:intergenic 40.0%
! CACACAGCTTTATACCCAAA+GGG + chr7_2:70767000-70767019 None:intergenic 40.0%
! TGTTATTTACTGTGCAGGGT+GGG + chr7_2:70765180-70765199 None:intergenic 40.0%
!! CTCTGTGTTATTTACTGTGC+AGG + chr7_2:70765185-70765204 None:intergenic 40.0%
AACAGCAAGAAGAAGAGGAT+TGG - chr7_2:70765301-70765320 Msa1073310:three_prime_UTR 40.0%
!!! TGCCGTTTTTATCAGTTCCT+TGG + chr7_2:70765398-70765417 None:intergenic 40.0%
! GATAGTGTTTTCCAACGATG+CGG + chr7_2:70765431-70765450 None:intergenic 40.0%
ATCGTTGGAAAACACTATCC+CGG - chr7_2:70765432-70765451 Msa1073310:CDS 40.0%
TGCACGTAAACGATGCAAAA+TGG + chr7_2:70766107-70766126 None:intergenic 40.0%
ACGAATGAGGATAATTCTCC+TGG - chr7_2:70766137-70766156 Msa1073310:CDS 40.0%
CGAATGAGGATAATTCTCCT+GGG - chr7_2:70766138-70766157 Msa1073310:CDS 40.0%
AGCCTGTCCTTAAATTCATC+TGG + chr7_2:70766197-70766216 None:intergenic 40.0%
!! TATCATCCCAAAGGTACTGA+AGG + chr7_2:70766554-70766573 None:intergenic 40.0%
! AATAGGCCACTCACTGATTA+TGG - chr7_2:70766633-70766652 Msa1073310:intron 40.0%
CATAACATGTAGTCACGTAC+AGG + chr7_2:70766878-70766897 None:intergenic 40.0%
! ACACAGCTTTATACCCAAAG+GGG + chr7_2:70766999-70767018 None:intergenic 40.0%
! CACACAGCTTTATACCCAAA+GGG + chr7_2:70767000-70767019 None:intergenic 40.0%
!! GTGTTATTTACTGTGCAGGG+TGG + chr7_2:70765181-70765200 None:intergenic 45.0%
ACACAGAGAGATAGCAAAGG+CGG - chr7_2:70765197-70765216 Msa1073310:three_prime_UTR 45.0%
TTCATCGGAGGAATTCTCAG+TGG - chr7_2:70765227-70765246 Msa1073310:three_prime_UTR 45.0%
TTCATGGAGAAGGAAAGGTC+GGG + chr7_2:70765283-70765302 None:intergenic 45.0%
GTTCATGGAGAAGGAAAGGT+CGG + chr7_2:70765284-70765303 None:intergenic 45.0%
TGCTGTTCATGGAGAAGGAA+AGG + chr7_2:70765288-70765307 None:intergenic 45.0%
!! CTTCTTGCTGTTCATGGAGA+AGG + chr7_2:70765293-70765312 None:intergenic 45.0%
!! CCTCTTCTTCTTGCTGTTCA+TGG + chr7_2:70765299-70765318 None:intergenic 45.0%
CCATGAACAGCAAGAAGAAG+AGG - chr7_2:70765296-70765315 Msa1073310:three_prime_UTR 45.0%
CATAATTTAGGCCTCTTGGC+TGG - chr7_2:70765829-70765848 Msa1073310:intron 45.0%
ACTTTGTACTTCATCCACCC+TGG - chr7_2:70766221-70766240 Msa1073310:intron 45.0%
CTTTGTACTTCATCCACCCT+GGG - chr7_2:70766222-70766241 Msa1073310:intron 45.0%
! CTTGGCAGGTTTTTCTTGAG+TGG - chr7_2:70766272-70766291 Msa1073310:intron 45.0%
! GCAGGTTTTTCTTGAGTGGA+GGG - chr7_2:70766276-70766295 Msa1073310:intron 45.0%
CCAAACGAGTATGCAACTGA+AGG + chr7_2:70766693-70766712 None:intergenic 45.0%
CCTTCAGTTGCATACTCGTT+TGG - chr7_2:70766690-70766709 Msa1073310:intron 45.0%
AAGTATGAAGAGAGATGGGC+AGG - chr7_2:70766714-70766733 Msa1073310:intron 45.0%
TTAGGTACGCTGTACACAAG+TGG + chr7_2:70766789-70766808 None:intergenic 45.0%
TGTGCATATACTTGCCCCTT+TGG - chr7_2:70766982-70767001 Msa1073310:five_prime_UTR 45.0%
GTGCATATACTTGCCCCTTT+GGG - chr7_2:70766983-70767002 Msa1073310:five_prime_UTR 45.0%
! GCACACAGCTTTATACCCAA+AGG + chr7_2:70767001-70767020 None:intergenic 45.0%
!! GTGTTATTTACTGTGCAGGG+TGG + chr7_2:70765181-70765200 None:intergenic 45.0%
ACACAGAGAGATAGCAAAGG+CGG - chr7_2:70765197-70765216 Msa1073310:three_prime_UTR 45.0%
TTCATCGGAGGAATTCTCAG+TGG - chr7_2:70765227-70765246 Msa1073310:three_prime_UTR 45.0%
TTCATGGAGAAGGAAAGGTC+GGG + chr7_2:70765283-70765302 None:intergenic 45.0%
GTTCATGGAGAAGGAAAGGT+CGG + chr7_2:70765284-70765303 None:intergenic 45.0%
TGCTGTTCATGGAGAAGGAA+AGG + chr7_2:70765288-70765307 None:intergenic 45.0%
!! CTTCTTGCTGTTCATGGAGA+AGG + chr7_2:70765293-70765312 None:intergenic 45.0%
!! CCTCTTCTTCTTGCTGTTCA+TGG + chr7_2:70765299-70765318 None:intergenic 45.0%
CCATGAACAGCAAGAAGAAG+AGG - chr7_2:70765296-70765315 Msa1073310:three_prime_UTR 45.0%
CATAATTTAGGCCTCTTGGC+TGG - chr7_2:70765829-70765848 Msa1073310:intron 45.0%
ACTTTGTACTTCATCCACCC+TGG - chr7_2:70766221-70766240 Msa1073310:intron 45.0%
CTTTGTACTTCATCCACCCT+GGG - chr7_2:70766222-70766241 Msa1073310:intron 45.0%
! CTTGGCAGGTTTTTCTTGAG+TGG - chr7_2:70766272-70766291 Msa1073310:intron 45.0%
! GCAGGTTTTTCTTGAGTGGA+GGG - chr7_2:70766276-70766295 Msa1073310:intron 45.0%
CCAAACGAGTATGCAACTGA+AGG + chr7_2:70766693-70766712 None:intergenic 45.0%
CCTTCAGTTGCATACTCGTT+TGG - chr7_2:70766690-70766709 Msa1073310:intron 45.0%
AAGTATGAAGAGAGATGGGC+AGG - chr7_2:70766714-70766733 Msa1073310:intron 45.0%
TTAGGTACGCTGTACACAAG+TGG + chr7_2:70766789-70766808 None:intergenic 45.0%
TGTGCATATACTTGCCCCTT+TGG - chr7_2:70766982-70767001 Msa1073310:five_prime_UTR 45.0%
GTGCATATACTTGCCCCTTT+GGG - chr7_2:70766983-70767002 Msa1073310:five_prime_UTR 45.0%
! GCACACAGCTTTATACCCAA+AGG + chr7_2:70767001-70767020 None:intergenic 45.0%
AAAGGCGGCGATGAGTTCAT+CGG - chr7_2:70765212-70765231 Msa1073310:three_prime_UTR 50.0%
ATCGGAGGAATTCTCAGTGG+TGG - chr7_2:70765230-70765249 Msa1073310:three_prime_UTR 50.0%
AGATCGGAGAAGTCTTCGTC+GGG + chr7_2:70765351-70765370 None:intergenic 50.0%
GAGATCGGAGAAGTCTTCGT+CGG + chr7_2:70765352-70765371 None:intergenic 50.0%
!! TTGCAGTGGAGGAAAGTACC+GGG + chr7_2:70765453-70765472 None:intergenic 50.0%
! GTTGCAGTGGAGGAAAGTAC+CGG + chr7_2:70765454-70765473 None:intergenic 50.0%
CTAGCTAGCATACGTTGCAG+TGG + chr7_2:70765467-70765486 None:intergenic 50.0%
AGTACATAACGCCAGCCAAG+AGG + chr7_2:70765843-70765862 None:intergenic 50.0%
CAACAGTTGTGAGTGCAGAG+CGG - chr7_2:70766033-70766052 Msa1073310:CDS 50.0%
ACGATGCAAAATGGCCCATC+TGG + chr7_2:70766098-70766117 None:intergenic 50.0%
GCACAGCACTGTTACGAATG+AGG - chr7_2:70766124-70766143 Msa1073310:CDS 50.0%
CTCCTGGGATGACAATCTTG+AGG - chr7_2:70766153-70766172 Msa1073310:intron 50.0%
CACCTCAAGATTGTCATCCC+AGG + chr7_2:70766158-70766177 None:intergenic 50.0%
CTGGGATGACAATCTTGAGG+TGG - chr7_2:70766156-70766175 Msa1073310:intron 50.0%
AAGAGTAGCCATGACAAGCC+TGG + chr7_2:70766255-70766274 None:intergenic 50.0%
AGGCTTGTCATGGCTACTCT+TGG - chr7_2:70766254-70766273 Msa1073310:intron 50.0%
TTGTCATGGCTACTCTTGGC+AGG - chr7_2:70766258-70766277 Msa1073310:intron 50.0%
! GGCAGGTTTTTCTTGAGTGG+AGG - chr7_2:70766275-70766294 Msa1073310:intron 50.0%
TAAGCCGCCTTCAGTACCTT+TGG - chr7_2:70766544-70766563 Msa1073310:intron 50.0%
AAGCCGCCTTCAGTACCTTT+GGG - chr7_2:70766545-70766564 Msa1073310:intron 50.0%
!! CATCCCAAAGGTACTGAAGG+CGG + chr7_2:70766551-70766570 None:intergenic 50.0%
GCATCCCAGTCAAGTGAAAG+GGG + chr7_2:70766671-70766690 None:intergenic 50.0%
GGCATCCCAGTCAAGTGAAA+GGG + chr7_2:70766672-70766691 None:intergenic 50.0%
AGGCATCCCAGTCAAGTGAA+AGG + chr7_2:70766673-70766692 None:intergenic 50.0%
ATGAAGAGAGATGGGCAGGA+AGG - chr7_2:70766718-70766737 Msa1073310:intron 50.0%
TGAAGAGAGATGGGCAGGAA+GGG - chr7_2:70766719-70766738 Msa1073310:intron 50.0%
AAAGGCGGCGATGAGTTCAT+CGG - chr7_2:70765212-70765231 Msa1073310:three_prime_UTR 50.0%
ATCGGAGGAATTCTCAGTGG+TGG - chr7_2:70765230-70765249 Msa1073310:three_prime_UTR 50.0%
AGATCGGAGAAGTCTTCGTC+GGG + chr7_2:70765351-70765370 None:intergenic 50.0%
GAGATCGGAGAAGTCTTCGT+CGG + chr7_2:70765352-70765371 None:intergenic 50.0%
!! TTGCAGTGGAGGAAAGTACC+GGG + chr7_2:70765453-70765472 None:intergenic 50.0%
! GTTGCAGTGGAGGAAAGTAC+CGG + chr7_2:70765454-70765473 None:intergenic 50.0%
CTAGCTAGCATACGTTGCAG+TGG + chr7_2:70765467-70765486 None:intergenic 50.0%
AGTACATAACGCCAGCCAAG+AGG + chr7_2:70765843-70765862 None:intergenic 50.0%
CAACAGTTGTGAGTGCAGAG+CGG - chr7_2:70766033-70766052 Msa1073310:CDS 50.0%
ACGATGCAAAATGGCCCATC+TGG + chr7_2:70766098-70766117 None:intergenic 50.0%
GCACAGCACTGTTACGAATG+AGG - chr7_2:70766124-70766143 Msa1073310:CDS 50.0%
CTCCTGGGATGACAATCTTG+AGG - chr7_2:70766153-70766172 Msa1073310:intron 50.0%
CACCTCAAGATTGTCATCCC+AGG + chr7_2:70766158-70766177 None:intergenic 50.0%
CTGGGATGACAATCTTGAGG+TGG - chr7_2:70766156-70766175 Msa1073310:intron 50.0%
AAGAGTAGCCATGACAAGCC+TGG + chr7_2:70766255-70766274 None:intergenic 50.0%
AGGCTTGTCATGGCTACTCT+TGG - chr7_2:70766254-70766273 Msa1073310:intron 50.0%
TTGTCATGGCTACTCTTGGC+AGG - chr7_2:70766258-70766277 Msa1073310:intron 50.0%
! GGCAGGTTTTTCTTGAGTGG+AGG - chr7_2:70766275-70766294 Msa1073310:intron 50.0%
TAAGCCGCCTTCAGTACCTT+TGG - chr7_2:70766544-70766563 Msa1073310:intron 50.0%
AAGCCGCCTTCAGTACCTTT+GGG - chr7_2:70766545-70766564 Msa1073310:intron 50.0%
!! CATCCCAAAGGTACTGAAGG+CGG + chr7_2:70766551-70766570 None:intergenic 50.0%
GCATCCCAGTCAAGTGAAAG+GGG + chr7_2:70766671-70766690 None:intergenic 50.0%
GGCATCCCAGTCAAGTGAAA+GGG + chr7_2:70766672-70766691 None:intergenic 50.0%
AGGCATCCCAGTCAAGTGAA+AGG + chr7_2:70766673-70766692 None:intergenic 50.0%
ATGAAGAGAGATGGGCAGGA+AGG - chr7_2:70766718-70766737 Msa1073310:intron 50.0%
TGAAGAGAGATGGGCAGGAA+GGG - chr7_2:70766719-70766738 Msa1073310:intron 50.0%
TTTACTGTGCAGGGTGGGTG+TGG + chr7_2:70765175-70765194 None:intergenic 55.0%
CTCAGTGGTGGTCCTAGCAT+CGG - chr7_2:70765242-70765261 Msa1073310:three_prime_UTR 55.0%
!! AAGGAAAGGTCGGGCATCGA+CGG + chr7_2:70765274-70765293 None:intergenic 55.0%
AGAAGTCTTCGTCGGGAGAG+AGG + chr7_2:70765344-70765363 None:intergenic 55.0%
ACTCGCATTCTCCGCATCGT+TGG - chr7_2:70765417-70765436 Msa1073310:exon 55.0%
GCTAGCATACGTTGCAGTGG+AGG + chr7_2:70765464-70765483 None:intergenic 55.0%
GCTTCGTTCCAGGCTTGTCA+TGG - chr7_2:70766244-70766263 Msa1073310:intron 55.0%
CCAGTCAAGTGAAAGGGGTC+GGG + chr7_2:70766666-70766685 None:intergenic 55.0%
CCCAGTCAAGTGAAAGGGGT+CGG + chr7_2:70766667-70766686 None:intergenic 55.0%
CCGACCCCTTTCACTTGACT+GGG - chr7_2:70766664-70766683 Msa1073310:intron 55.0%
TTTACTGTGCAGGGTGGGTG+TGG + chr7_2:70765175-70765194 None:intergenic 55.0%
CTCAGTGGTGGTCCTAGCAT+CGG - chr7_2:70765242-70765261 Msa1073310:three_prime_UTR 55.0%
!! AAGGAAAGGTCGGGCATCGA+CGG + chr7_2:70765274-70765293 None:intergenic 55.0%
AGAAGTCTTCGTCGGGAGAG+AGG + chr7_2:70765344-70765363 None:intergenic 55.0%
ACTCGCATTCTCCGCATCGT+TGG - chr7_2:70765417-70765436 Msa1073310:exon 55.0%
GCTAGCATACGTTGCAGTGG+AGG + chr7_2:70765464-70765483 None:intergenic 55.0%
GCTTCGTTCCAGGCTTGTCA+TGG - chr7_2:70766244-70766263 Msa1073310:intron 55.0%
CCAGTCAAGTGAAAGGGGTC+GGG + chr7_2:70766666-70766685 None:intergenic 55.0%
CCCAGTCAAGTGAAAGGGGT+CGG + chr7_2:70766667-70766686 None:intergenic 55.0%
CCGACCCCTTTCACTTGACT+GGG - chr7_2:70766664-70766683 Msa1073310:intron 55.0%
TGGGTGTGGCCGTGTGGATA+GGG + chr7_2:70765161-70765180 None:intergenic 60.0%
TGAGTGCAGAGCGGCTGAAG+AGG - chr7_2:70766042-70766061 Msa1073310:CDS 60.0%
CAAGCCTGGAACGAAGCCCA+GGG + chr7_2:70766241-70766260 None:intergenic 60.0%
ACAAGCCTGGAACGAAGCCC+AGG + chr7_2:70766242-70766261 None:intergenic 60.0%
CCCGACCCCTTTCACTTGAC+TGG - chr7_2:70766663-70766682 Msa1073310:intron 60.0%
TGGGTGTGGCCGTGTGGATA+GGG + chr7_2:70765161-70765180 None:intergenic 60.0%
TGAGTGCAGAGCGGCTGAAG+AGG - chr7_2:70766042-70766061 Msa1073310:CDS 60.0%
CAAGCCTGGAACGAAGCCCA+GGG + chr7_2:70766241-70766260 None:intergenic 60.0%
ACAAGCCTGGAACGAAGCCC+AGG + chr7_2:70766242-70766261 None:intergenic 60.0%
CCCGACCCCTTTCACTTGAC+TGG - chr7_2:70766663-70766682 Msa1073310:intron 60.0%
GGGTGTGGCCGTGTGGATAG+GGG + chr7_2:70765160-70765179 None:intergenic 65.0%
GTGGGTGTGGCCGTGTGGAT+AGG + chr7_2:70765162-70765181 None:intergenic 65.0%
GGCGGCGATGAGTTCATCGG+AGG - chr7_2:70765215-70765234 Msa1073310:three_prime_UTR 65.0%
CGACGGCGAGATCCGATGCT+AGG + chr7_2:70765257-70765276 None:intergenic 65.0%
TCCACCCTGGGCTTCGTTCC+AGG - chr7_2:70766234-70766253 Msa1073310:intron 65.0%
GGGTGTGGCCGTGTGGATAG+GGG + chr7_2:70765160-70765179 None:intergenic 65.0%
GTGGGTGTGGCCGTGTGGAT+AGG + chr7_2:70765162-70765181 None:intergenic 65.0%
GGCGGCGATGAGTTCATCGG+AGG - chr7_2:70765215-70765234 Msa1073310:three_prime_UTR 65.0%
CGACGGCGAGATCCGATGCT+AGG + chr7_2:70765257-70765276 None:intergenic 65.0%
TCCACCCTGGGCTTCGTTCC+AGG - chr7_2:70766234-70766253 Msa1073310:intron 65.0%
GCCTGGAACGAAGCCCAGGG+TGG + chr7_2:70766238-70766257 None:intergenic 70.0%
GCCTGGAACGAAGCCCAGGG+TGG + chr7_2:70766238-70766257 None:intergenic 70.0%
GCAGGGTGGGTGTGGCCGTG+TGG + chr7_2:70765167-70765186 None:intergenic 75.0%
GCAGGGTGGGTGTGGCCGTG+TGG + chr7_2:70765167-70765186 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 70765157 70767036 70765157 ID=Msa1073310;Name=Msa1073310
chr7_2 mRNA 70765157 70767036 70765157 ID=Msa1073310-mRNA-1;Parent=Msa1073310;Name=Msa1073310-mRNA-1;_AED=0.04;_eAED=0.04;_QI=65|1|1|1|1|1|3|266|248
chr7_2 exon 70765157 70765672 70765157 ID=Msa1073310-mRNA-1:exon:15981;Parent=Msa1073310-mRNA-1
chr7_2 exon 70765896 70766160 70765896 ID=Msa1073310-mRNA-1:exon:15980;Parent=Msa1073310-mRNA-1
chr7_2 exon 70766740 70767036 70766740 ID=Msa1073310-mRNA-1:exon:15979;Parent=Msa1073310-mRNA-1
chr7_2 five_prime_UTR 70766972 70767036 70766972 ID=Msa1073310-mRNA-1:five_prime_utr;Parent=Msa1073310-mRNA-1
chr7_2 CDS 70766740 70766971 70766740 ID=Msa1073310-mRNA-1:cds;Parent=Msa1073310-mRNA-1
chr7_2 CDS 70765896 70766160 70765896 ID=Msa1073310-mRNA-1:cds;Parent=Msa1073310-mRNA-1
chr7_2 CDS 70765423 70765672 70765423 ID=Msa1073310-mRNA-1:cds;Parent=Msa1073310-mRNA-1
chr7_2 three_prime_UTR 70765157 70765422 70765157 ID=Msa1073310-mRNA-1:three_prime_utr;Parent=Msa1073310-mRNA-1
Gene Sequence

>Msa1073310

ATGAGTTCATCGGAGGAATTCTCAGTGGTGGTCCTAGCATCGGATCTCGCCGTCGATGCCCGACCTTTCCTTCTCCATGAACAGCAAGAAGAAGAGGATTGGCACGATTGTTCTCAGTACCTCTCTCCCGACGAAGACTTCTCCGATCTCGAATTCTTACAATTCTTCACTCTCCAAGGAACTGATAAAAACGGCACTCGCATTCTCCGCATCGTTGGAAAACACTATCCCGCAACAGTTGTGAGTGCAGAGCGGCTGAAGAGGTATGTATTTCACAAATTATTCAGTGAGTTACCAGATGGGCCATTTTGCATCGTTTACGTGCACAGCACTGTTACGAATGAGGATAATTCTCCTGGGATGACAATCTTGAGGTGGATTTATGAAGATCTTCCAGATGAATTTAAGGACAGGCTTCAAACTTTGTACTTCATCCACCCTGGGCTTCGTTCCAGGCTTGTCATGGCTACTCTTGGCAGGTTTTTCTTGAGTGGAGGATTATATTGGAAGATCAAGTATGTAAGCCGCCTTCAGTACCTTTGGGATGATATAAAGAAAGGAGAGATTGAGATACCAGAATTTGTACAAAAGCATGATGATATTTTGGAGAATAGGCCACTCACTGATTATGGAATTGAACCCGACCCCTTTCACTTGACTGGGATGCCTTCAGTTGCATACTCGTTTGGAAAGTATGAAGAGAGATGGGCAGGAAGGGATCATATCTCTGAGTATAAATATCACTGA
Protein sequence

>Msa1073310

MSSSEEFSVVVLASDLAVDARPFLLHEQQEEEDWHDCSQYLSPDEDFSDLEFLQFFTLQGTDKNGTRILRIVGKHYPATVVSAERLKRYVFHKLFSELPDGPFCIVYVHSTVTNEDNSPGMTILRWIYEDLPDEFKDRLQTLYFIHPGLRSRLVMATLGRFFLSGGLYWKIKYVSRLQYLWDDIKKGEIEIPEFVQKHDDILENRPLTDYGIEPDPFHLTGMPSVAYSFGKYEERWAGRDHISEYKYH*