AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1079890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079890 MtrunA17_Chr7g0264601 92.929 99 6 1 1 99 1 98 1.14e-55 178
Msa1079890 MtrunA17_Chr1g0180631 60.000 105 29 4 1 95 1 102 4.39e-22 90.1
Msa1079890 MtrunA17_Chr1g0180631 43.077 65 37 0 15 79 136 200 3.93e-11 60.1
Msa1079890 MtrunA17_Chr4g0028461 50.485 103 40 2 15 117 67 158 4.90e-22 90.1
Msa1079890 MtrunA17_Chr6g0454851 60.000 65 26 0 14 78 18 82 2.61e-17 78.2
Msa1079890 MtrunA17_Chr6g0455131 51.220 82 36 2 1 79 1 81 1.23e-14 70.5
Msa1079890 MtrunA17_Chr2g0327311 43.137 102 48 4 15 110 66 163 1.11e-13 67.0
Msa1079890 MtrunA17_Chr6g0454951 53.846 65 30 0 14 78 11 75 1.02e-11 62.0
Msa1079890 MtrunA17_Chr2g0290471 48.529 68 33 2 14 80 34 100 3.48e-11 59.7
Msa1079890 MtrunA17_Chr8g0386231 45.070 71 37 2 16 85 53 122 7.34e-11 58.9
Msa1079890 MtrunA17_Chr5g0429111 33.333 87 57 1 17 103 56 141 7.81e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1079890 AT5G03380.1 50.820 122 50 1 1 112 1 122 1.29e-27 106
Msa1079890 AT5G03380.2 57.895 95 40 0 18 112 1 95 1.13e-25 100
Msa1079890 AT2G36950.1 59.211 76 30 1 17 92 53 127 5.91e-21 88.2
Msa1079890 AT5G60800.1 60.000 70 27 1 15 84 27 95 8.16e-16 73.2
Msa1079890 AT5G60800.2 60.000 70 27 1 15 84 27 95 1.08e-15 72.8
Msa1079890 AT2G28090.1 56.757 74 30 2 16 88 31 103 1.24e-14 69.3
Msa1079890 AT3G02960.1 35.556 90 54 2 16 104 38 124 9.37e-12 61.6
Msa1079890 AT4G38580.1 30.159 126 86 1 9 134 21 144 1.99e-11 58.9
Msa1079890 AT4G38580.2 30.159 126 86 1 9 134 21 144 1.99e-11 58.9

Find 114 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATAAAAGTTGTTTGATTT+TGG 0.150912 7_2:+79148467 None:intergenic
TTCTTACCATCCTCTTTCTT+TGG 0.219108 7_2:+79147078 None:intergenic
AATAACAAACTAACGGTTAT+TGG 0.223438 7_2:-79148036 Msa1079890:CDS
ATAACCGTTAGTTTGTTATT+TGG 0.230170 7_2:+79148039 None:intergenic
AAGGATTTGGTGACGGTAAA+AGG 0.291312 7_2:-79147171 Msa1079890:three_prime_UTR
GCTAGATGAGAATCCAGTTT+TGG 0.305894 7_2:-79146388 Msa1079890:three_prime_UTR
AATGAAATTTCTAACCTGTT+TGG 0.320845 7_2:+79147816 None:intergenic
ATTTGTGGAGGAGGTTGATT+TGG 0.324973 7_2:+79146649 None:intergenic
TAAGGTAGAAGTTAATAAAA+TGG 0.334935 7_2:-79146965 Msa1079890:three_prime_UTR
GTATTAGTTTAATTTAGTTT+TGG 0.337285 7_2:-79146495 Msa1079890:three_prime_UTR
TCCTGAGGTTTATCTGCGGC+GGG 0.344718 7_2:+79147916 None:intergenic
TAGAAATTGTACCGTCGAAA+TGG 0.400716 7_2:+79148158 None:intergenic
CATATACATACACCAACAAA+TGG 0.404953 7_2:-79148445 Msa1079890:exon
AATTATAATCATACCCTTGT+TGG 0.413275 7_2:+79146749 None:intergenic
TTCAGCTTCTCCGTTAGATA+TGG 0.416992 7_2:+79147123 None:intergenic
TCACAAGGTTCGTGATAAAC+TGG 0.419797 7_2:-79148001 Msa1079890:CDS
CTGGTACGACGGATATGAAC+CGG 0.424635 7_2:-79146902 Msa1079890:three_prime_UTR
TTCTTCGGGTTTCTTCTCCT+CGG 0.448426 7_2:+79147846 None:intergenic
GAAATTTCTAACCTGTTTGG+AGG 0.452842 7_2:+79147819 None:intergenic
AACTAACCTGACCCATTTGT+TGG 0.453337 7_2:+79148433 None:intergenic
AATCATACCCTTGTTGGTGT+TGG 0.457276 7_2:+79146755 None:intergenic
AACGGAAACAACGTATATAT+AGG 0.460689 7_2:+79148530 None:intergenic
TCAAGGCCAAGGTGGGCATA+TGG 0.461955 7_2:-79146716 Msa1079890:three_prime_UTR
TATAATTATGTGAATCAAGA+AGG 0.465519 7_2:-79146799 Msa1079890:three_prime_UTR
AAGAATAAAGAGAAAGATGA+GGG 0.468853 7_2:-79147060 Msa1079890:three_prime_UTR
TCATTTCTTGTGTTTGTGGA+TGG 0.469352 7_2:+79148635 None:intergenic
TTCGATTTCGTCCCTGCTAA+CGG 0.475098 7_2:+79147780 None:intergenic
GTTAATAAAATGGAGCATCA+TGG 0.476270 7_2:-79146955 Msa1079890:three_prime_UTR
AGCAAAGGAAGGCGGAACTA+AGG 0.479726 7_2:-79146983 Msa1079890:three_prime_UTR
CTACGCGATGCAAGTTCAGC+CGG 0.480734 7_2:-79146848 Msa1079890:three_prime_UTR
TCACTAAACATTTGTGGAGG+AGG 0.485000 7_2:+79146640 None:intergenic
CTTTCTTCGATACCGTTAGC+AGG 0.485645 7_2:-79147792 Msa1079890:CDS
AAGTGATGAAGGGAAGGATT+TGG 0.486380 7_2:-79147184 Msa1079890:three_prime_UTR
AAAATGGAGCATCATGGGTA+CGG 0.496994 7_2:-79146949 Msa1079890:three_prime_UTR
CACATCATGGAACAAGCATT+CGG 0.498057 7_2:+79146610 None:intergenic
TCAGGAGAAGAAGAAGAAAC+CGG 0.499063 7_2:-79147899 Msa1079890:CDS
CTGAGGTTTATCTGCGGCGG+GGG 0.500066 7_2:+79147918 None:intergenic
CTCCTGAGGTTTATCTGCGG+CGG 0.500478 7_2:+79147915 None:intergenic
TCCAGTTTCAAAACGACAGA+AGG 0.505925 7_2:+79148226 None:intergenic
AAGTGGTGGTGAGAAGAAAG+AGG 0.507353 7_2:-79147013 Msa1079890:three_prime_UTR
GAATCAGTGACAAGTGATGA+AGG 0.507632 7_2:-79147195 Msa1079890:three_prime_UTR
GGTTGCTGATATTGATATTG+AGG 0.508034 7_2:+79146688 None:intergenic
TTAATAAAATGGAGCATCAT+GGG 0.509928 7_2:-79146954 Msa1079890:three_prime_UTR
ATGGTAAAATGCTCACATCA+TGG 0.510934 7_2:+79146597 None:intergenic
TATAATTATGTGAATCATCA+AGG 0.516463 7_2:-79146733 Msa1079890:three_prime_UTR
CACATCAAACTCCTATGTAC+TGG 0.518155 7_2:-79146921 Msa1079890:three_prime_UTR
AGTGGTGGTGAGAAGAAAGA+GGG 0.519522 7_2:-79147012 Msa1079890:three_prime_UTR
CGCGCGGTTCGCCATTTCGA+CGG 0.520039 7_2:-79148169 Msa1079890:intron
CGTCACTAACCATGCGCCAA+TGG 0.522421 7_2:+79146419 None:intergenic
CCCCGCCGCAGATAAACCTC+AGG 0.528513 7_2:-79147917 Msa1079890:CDS
GGCGGAGAAAATTAAGAAGA+AGG 0.528996 7_2:-79147980 Msa1079890:CDS
TACGCGATGCAAGTTCAGCC+GGG 0.533998 7_2:-79146847 Msa1079890:three_prime_UTR
ATATAGTTGAACTGTGCCAT+TGG 0.535420 7_2:-79146435 Msa1079890:three_prime_UTR
AAATGGAGCATCATGGGTAC+GGG 0.540394 7_2:-79146948 Msa1079890:three_prime_UTR
TTTGGATGCAAGTAAAATTG+AGG 0.542852 7_2:+79146667 None:intergenic
TTTACAGTCGGTTCAAAACA+CGG 0.543169 7_2:-79147637 Msa1079890:three_prime_UTR
AAACTGGATTCTCATCTAGC+AGG 0.547301 7_2:+79146391 None:intergenic
GTAAATTAAGTATGAAGCAA+CGG 0.557538 7_2:+79148512 None:intergenic
AAGATTAAATTACATTGTGA+TGG 0.558652 7_2:-79147606 Msa1079890:three_prime_UTR
GGTTTCTTCTTCTTCTCCTG+AGG 0.559543 7_2:+79147901 None:intergenic
ATAATTATGTGAATCAAGAA+GGG 0.563769 7_2:-79146798 Msa1079890:three_prime_UTR
AAAAGGAACAATAGATGCAA+AGG 0.563969 7_2:-79147154 Msa1079890:three_prime_UTR
AAGATTATCCTCAAAATCAA+AGG 0.564498 7_2:-79147564 Msa1079890:intron
CATACACCAACAAATGGGTC+AGG 0.565091 7_2:-79148439 Msa1079890:intron
ATATACATACACCAACAAAT+GGG 0.570058 7_2:-79148444 Msa1079890:exon
TGTGGTTCAACCAAAGAAAG+AGG 0.576487 7_2:-79147088 Msa1079890:three_prime_UTR
ACTCCTATGTACTGGTACGA+CGG 0.580031 7_2:-79146913 Msa1079890:three_prime_UTR
GGAAATTGTACCATATCTAA+CGG 0.582528 7_2:-79147133 Msa1079890:three_prime_UTR
AGTTTATCACGAACCTTGTG+AGG 0.583513 7_2:+79148003 None:intergenic
AGTGACAAGTGATGAAGGGA+AGG 0.584358 7_2:-79147190 Msa1079890:three_prime_UTR
GGCGCATGGTTAGTGACGTA+CGG 0.588300 7_2:-79146414 Msa1079890:three_prime_UTR
GGAGAAGCTGAAGCGGAATG+TGG 0.588949 7_2:-79147112 Msa1079890:three_prime_UTR
TAAGAATAAAGAGAAAGATG+AGG 0.590847 7_2:-79147061 Msa1079890:three_prime_UTR
ATCTAACGGAGAAGCTGAAG+CGG 0.591313 7_2:-79147119 Msa1079890:three_prime_UTR
GTTCCACCATATGCCCACCT+TGG 0.591927 7_2:+79146710 None:intergenic
TATCCGTCGTACCAGTACAT+AGG 0.593400 7_2:+79146910 None:intergenic
CCACCACTACTACTTTGACC+CGG 0.594795 7_2:+79146883 None:intergenic
GTTCAACCAAAGAAAGAGGA+TGG 0.595685 7_2:-79147084 Msa1079890:three_prime_UTR
TATGTGAATCATCAAGGCCA+AGG 0.596173 7_2:-79146727 Msa1079890:three_prime_UTR
CAAACTAACGGTTATTGGAA+AGG 0.597968 7_2:-79148031 Msa1079890:CDS
AAACTGGACTTACATTGCGA+AGG 0.601860 7_2:-79148211 Msa1079890:CDS
CCTGAGGTTTATCTGCGGCG+GGG 0.602053 7_2:+79147917 None:intergenic
GGTCAAAGTAGTAGTGGTGG+TGG 0.602328 7_2:-79146880 Msa1079890:three_prime_UTR
AGGCCAAGGTGGGCATATGG+TGG 0.607750 7_2:-79146713 Msa1079890:three_prime_UTR
TTTCTTCGATACCGTTAGCA+GGG 0.610978 7_2:-79147791 Msa1079890:CDS
TGAATCATCAAGGCCAAGGT+GGG 0.616379 7_2:-79146723 Msa1079890:three_prime_UTR
TGGTACGACGGATATGAACC+GGG 0.618568 7_2:-79146901 Msa1079890:three_prime_UTR
TGAACTGTGCCATTGGCGCA+TGG 0.621869 7_2:-79146428 Msa1079890:three_prime_UTR
TGAAGGGAAGGATTTGGTGA+CGG 0.623254 7_2:-79147178 Msa1079890:three_prime_UTR
GCTGAAGCGGAATGTGGATG+TGG 0.624843 7_2:-79147106 Msa1079890:three_prime_UTR
TCATCACTAAACATTTGTGG+AGG 0.625101 7_2:+79146637 None:intergenic
CCAGTTTCAAAACGACAGAA+GGG 0.625562 7_2:+79148227 None:intergenic
GAACCGGGTCAAAGTAGTAG+TGG 0.626064 7_2:-79146886 Msa1079890:three_prime_UTR
CCGGGTCAAAGTAGTAGTGG+TGG 0.628078 7_2:-79146883 Msa1079890:three_prime_UTR
ATGTGAACCAACACCAACAA+GGG 0.630482 7_2:-79146762 Msa1079890:three_prime_UTR
ATGAGTCACAATCAGTGAGG+TGG 0.633960 7_2:+79148579 None:intergenic
TATGTGAACCAACACCAACA+AGG 0.636197 7_2:-79146763 Msa1079890:three_prime_UTR
TACGCCAAATAACAAACTAA+CGG 0.636587 7_2:-79148043 Msa1079890:CDS
AATCAGTGACAAGTGATGAA+GGG 0.649426 7_2:-79147194 Msa1079890:three_prime_UTR
TCAAAAGAAGATCAAAGTGG+TGG 0.650941 7_2:-79147027 Msa1079890:three_prime_UTR
CTTCTCCTGAGGTTTATCTG+CGG 0.654019 7_2:+79147912 None:intergenic
GTGAATCATCAAGGCCAAGG+TGG 0.663621 7_2:-79146724 Msa1079890:three_prime_UTR
AGAATAAAGAGAAAGATGAG+GGG 0.672988 7_2:-79147059 Msa1079890:three_prime_UTR
ACTTGATGATTCGAATACCC+CGG 0.673697 7_2:+79146829 None:intergenic
ACGCGATGCAAGTTCAGCCG+GGG 0.674013 7_2:-79146846 Msa1079890:three_prime_UTR
CGGTTAGTGAGAACAAAGCG+TGG 0.681728 7_2:+79147677 None:intergenic
TGGAAAGGTAGATCCTCACA+AGG 0.688035 7_2:-79148016 Msa1079890:CDS
CAAGGTTCGTGATAAACTGG+CGG 0.691001 7_2:-79147998 Msa1079890:CDS
AAATCAAAAGAAGATCAAAG+TGG 0.692885 7_2:-79147030 Msa1079890:three_prime_UTR
TCTCTTTAACTTAATCAACA+CGG 0.693612 7_2:+79147709 None:intergenic
AGAGTCAAAGAGAGTGACTG+TGG 0.703780 7_2:+79148556 None:intergenic
TGTCAAGAAGATCAAACGCG+CGG 0.732476 7_2:-79148185 Msa1079890:CDS
TTAGTGAGAACAAAGCGTGG+AGG 0.771025 7_2:+79147680 None:intergenic
TGGATGAGTCACAATCAGTG+AGG 0.810738 7_2:+79148576 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAAATCAATTAAAA+CGG + chr7_2:79147265-79147284 None:intergenic 10.0%
!! ATTATACATGAATAAATAAT+TGG - chr7_2:79147521-79147540 Msa1079890:intron 10.0%
!!! TGAATTTTATAATATTACAT+CGG + chr7_2:79148617-79148636 None:intergenic 10.0%
!! AAAACAAAAATCAATTAAAA+CGG + chr7_2:79147265-79147284 None:intergenic 10.0%
!! ATTATACATGAATAAATAAT+TGG - chr7_2:79147521-79147540 Msa1079890:intron 10.0%
!!! TGAATTTTATAATATTACAT+CGG + chr7_2:79148617-79148636 None:intergenic 10.0%
!!! AAATAATTCGATTTTCTTAT+TGG + chr7_2:79146317-79146336 None:intergenic 15.0%
!!! TATAATTTTATATACACAAG+TGG + chr7_2:79147507-79147526 None:intergenic 15.0%
!!! AAGTTAATATTTTTCTCATT+CGG - chr7_2:79147596-79147615 Msa1079890:three_prime_UTR 15.0%
!!! GTATTAGTTTAATTTAGTTT+TGG - chr7_2:79148424-79148443 Msa1079890:intron 15.0%
!!! AAATAATTCGATTTTCTTAT+TGG + chr7_2:79146317-79146336 None:intergenic 15.0%
!!! TATAATTTTATATACACAAG+TGG + chr7_2:79147507-79147526 None:intergenic 15.0%
!!! AAGTTAATATTTTTCTCATT+CGG - chr7_2:79147596-79147615 Msa1079890:three_prime_UTR 15.0%
!!! GTATTAGTTTAATTTAGTTT+TGG - chr7_2:79148424-79148443 Msa1079890:intron 15.0%
!!! GAATAAAAGTTGTTTGATTT+TGG + chr7_2:79146455-79146474 None:intergenic 20.0%
!!! ACATTAATCCAATTTGTTAA+AGG + chr7_2:79146539-79146558 None:intergenic 20.0%
!!! ATTGATTTTTGTTTTACAGT+CGG - chr7_2:79147270-79147289 Msa1079890:intron 20.0%
!! AAGATTAAATTACATTGTGA+TGG - chr7_2:79147313-79147332 Msa1079890:intron 20.0%
!!! TACTAGTTTACTGAAAATAA+AGG + chr7_2:79147404-79147423 None:intergenic 20.0%
!! TAATTACTTGGTTAAAATTG+TGG - chr7_2:79147690-79147709 Msa1079890:three_prime_UTR 20.0%
!! TAAGGTAGAAGTTAATAAAA+TGG - chr7_2:79147954-79147973 Msa1079890:CDS 20.0%
!! TATAATTATGTGAATCAAGA+AGG - chr7_2:79148120-79148139 Msa1079890:intron 20.0%
!! ATAATTATGTGAATCAAGAA+GGG - chr7_2:79148121-79148140 Msa1079890:intron 20.0%
!! TATAATTATGTGAATCATCA+AGG - chr7_2:79148186-79148205 Msa1079890:CDS 20.0%
!!! TAGAGACATATTTTTGTTTT+TGG - chr7_2:79148360-79148379 Msa1079890:intron 20.0%
!!! GAATAAAAGTTGTTTGATTT+TGG + chr7_2:79146455-79146474 None:intergenic 20.0%
!!! ACATTAATCCAATTTGTTAA+AGG + chr7_2:79146539-79146558 None:intergenic 20.0%
!!! ATTGATTTTTGTTTTACAGT+CGG - chr7_2:79147270-79147289 Msa1079890:intron 20.0%
!! AAGATTAAATTACATTGTGA+TGG - chr7_2:79147313-79147332 Msa1079890:intron 20.0%
!!! TACTAGTTTACTGAAAATAA+AGG + chr7_2:79147404-79147423 None:intergenic 20.0%
!! TAATTACTTGGTTAAAATTG+TGG - chr7_2:79147690-79147709 Msa1079890:three_prime_UTR 20.0%
!! TAAGGTAGAAGTTAATAAAA+TGG - chr7_2:79147954-79147973 Msa1079890:CDS 20.0%
!! TATAATTATGTGAATCAAGA+AGG - chr7_2:79148120-79148139 Msa1079890:intron 20.0%
!! ATAATTATGTGAATCAAGAA+GGG - chr7_2:79148121-79148140 Msa1079890:intron 20.0%
!! TATAATTATGTGAATCATCA+AGG - chr7_2:79148186-79148205 Msa1079890:CDS 20.0%
!!! TAGAGACATATTTTTGTTTT+TGG - chr7_2:79148360-79148379 Msa1079890:intron 20.0%
!! ATTTTCATTTCTTGTGTTTG+TGG + chr7_2:79146291-79146310 None:intergenic 25.0%
! GTAAATTAAGTATGAAGCAA+CGG + chr7_2:79146410-79146429 None:intergenic 25.0%
! ATATACATACACCAACAAAT+GGG - chr7_2:79146475-79146494 Msa1079890:three_prime_UTR 25.0%
!!! ATCCAATTTGTTAAAGGATA+AGG + chr7_2:79146533-79146552 None:intergenic 25.0%
! AATTAAAAAATCGATGATGC+AGG - chr7_2:79146832-79146851 Msa1079890:three_prime_UTR 25.0%
!!! ATAACCGTTAGTTTGTTATT+TGG + chr7_2:79146883-79146902 None:intergenic 25.0%
! AATAACAAACTAACGGTTAT+TGG - chr7_2:79146883-79146902 Msa1079890:three_prime_UTR 25.0%
! AATGAAATTTCTAACCTGTT+TGG + chr7_2:79147106-79147125 None:intergenic 25.0%
!! TCTCTTTAACTTAATCAACA+CGG + chr7_2:79147213-79147232 None:intergenic 25.0%
! AAGATTATCCTCAAAATCAA+AGG - chr7_2:79147355-79147374 Msa1079890:intron 25.0%
! TAAGAATAAAGAGAAAGATG+AGG - chr7_2:79147858-79147877 Msa1079890:CDS 25.0%
! AAGAATAAAGAGAAAGATGA+GGG - chr7_2:79147859-79147878 Msa1079890:CDS 25.0%
! AAATCAAAAGAAGATCAAAG+TGG - chr7_2:79147889-79147908 Msa1079890:CDS 25.0%
!! TTAATAAAATGGAGCATCAT+GGG - chr7_2:79147965-79147984 Msa1079890:CDS 25.0%
! AATTATAATCATACCCTTGT+TGG + chr7_2:79148173-79148192 None:intergenic 25.0%
!! TTTTCATCACTAAACATTTG+TGG + chr7_2:79148288-79148307 None:intergenic 25.0%
!! ATTTTCATTTCTTGTGTTTG+TGG + chr7_2:79146291-79146310 None:intergenic 25.0%
! GTAAATTAAGTATGAAGCAA+CGG + chr7_2:79146410-79146429 None:intergenic 25.0%
! ATATACATACACCAACAAAT+GGG - chr7_2:79146475-79146494 Msa1079890:three_prime_UTR 25.0%
!!! ATCCAATTTGTTAAAGGATA+AGG + chr7_2:79146533-79146552 None:intergenic 25.0%
! AATTAAAAAATCGATGATGC+AGG - chr7_2:79146832-79146851 Msa1079890:three_prime_UTR 25.0%
!!! ATAACCGTTAGTTTGTTATT+TGG + chr7_2:79146883-79146902 None:intergenic 25.0%
! AATAACAAACTAACGGTTAT+TGG - chr7_2:79146883-79146902 Msa1079890:three_prime_UTR 25.0%
! AATGAAATTTCTAACCTGTT+TGG + chr7_2:79147106-79147125 None:intergenic 25.0%
!! TCTCTTTAACTTAATCAACA+CGG + chr7_2:79147213-79147232 None:intergenic 25.0%
! AAGATTATCCTCAAAATCAA+AGG - chr7_2:79147355-79147374 Msa1079890:intron 25.0%
! TAAGAATAAAGAGAAAGATG+AGG - chr7_2:79147858-79147877 Msa1079890:CDS 25.0%
! AAGAATAAAGAGAAAGATGA+GGG - chr7_2:79147859-79147878 Msa1079890:CDS 25.0%
! AAATCAAAAGAAGATCAAAG+TGG - chr7_2:79147889-79147908 Msa1079890:CDS 25.0%
!! TTAATAAAATGGAGCATCAT+GGG - chr7_2:79147965-79147984 Msa1079890:CDS 25.0%
! AATTATAATCATACCCTTGT+TGG + chr7_2:79148173-79148192 None:intergenic 25.0%
!! TTTTCATCACTAAACATTTG+TGG + chr7_2:79148288-79148307 None:intergenic 25.0%
AACGGAAACAACGTATATAT+AGG + chr7_2:79146392-79146411 None:intergenic 30.0%
CATATACATACACCAACAAA+TGG - chr7_2:79146474-79146493 Msa1079890:three_prime_UTR 30.0%
CTCCTTATCCTTTAACAAAT+TGG - chr7_2:79146528-79146547 Msa1079890:three_prime_UTR 30.0%
ACTACGATATTCACAATTTC+AGG - chr7_2:79146790-79146809 Msa1079890:three_prime_UTR 30.0%
CTACGATATTCACAATTTCA+GGG - chr7_2:79146791-79146810 Msa1079890:three_prime_UTR 30.0%
TACGCCAAATAACAAACTAA+CGG - chr7_2:79146876-79146895 Msa1079890:three_prime_UTR 30.0%
CAACTAATAAAGAATACTGC+CGG + chr7_2:79147574-79147593 None:intergenic 30.0%
TCCATGTGGTATTAATTACT+TGG - chr7_2:79147678-79147697 Msa1079890:three_prime_UTR 30.0%
ACCAAGTAATTAATACCACA+TGG + chr7_2:79147682-79147701 None:intergenic 30.0%
TTGGTTAAAATTGTGGTTGT+AGG - chr7_2:79147697-79147716 Msa1079890:three_prime_UTR 30.0%
AAAAGGAACAATAGATGCAA+AGG - chr7_2:79147765-79147784 Msa1079890:CDS 30.0%
GGAAATTGTACCATATCTAA+CGG - chr7_2:79147786-79147805 Msa1079890:CDS 30.0%
AGAATAAAGAGAAAGATGAG+GGG - chr7_2:79147860-79147879 Msa1079890:CDS 30.0%
! GTTAATAAAATGGAGCATCA+TGG - chr7_2:79147964-79147983 Msa1079890:CDS 30.0%
TTTGGATGCAAGTAAAATTG+AGG + chr7_2:79148255-79148274 None:intergenic 30.0%
! TCTATCTATGTTTTCCTCAA+TGG + chr7_2:79148344-79148363 None:intergenic 30.0%
TTTGGGGAAAAAGACAAATA+TGG - chr7_2:79148549-79148568 Msa1079890:five_prime_UTR 30.0%
AACGGAAACAACGTATATAT+AGG + chr7_2:79146392-79146411 None:intergenic 30.0%
CATATACATACACCAACAAA+TGG - chr7_2:79146474-79146493 Msa1079890:three_prime_UTR 30.0%
CTCCTTATCCTTTAACAAAT+TGG - chr7_2:79146528-79146547 Msa1079890:three_prime_UTR 30.0%
ACTACGATATTCACAATTTC+AGG - chr7_2:79146790-79146809 Msa1079890:three_prime_UTR 30.0%
CTACGATATTCACAATTTCA+GGG - chr7_2:79146791-79146810 Msa1079890:three_prime_UTR 30.0%
TACGCCAAATAACAAACTAA+CGG - chr7_2:79146876-79146895 Msa1079890:three_prime_UTR 30.0%
CAACTAATAAAGAATACTGC+CGG + chr7_2:79147574-79147593 None:intergenic 30.0%
TCCATGTGGTATTAATTACT+TGG - chr7_2:79147678-79147697 Msa1079890:three_prime_UTR 30.0%
ACCAAGTAATTAATACCACA+TGG + chr7_2:79147682-79147701 None:intergenic 30.0%
TTGGTTAAAATTGTGGTTGT+AGG - chr7_2:79147697-79147716 Msa1079890:three_prime_UTR 30.0%
AAAAGGAACAATAGATGCAA+AGG - chr7_2:79147765-79147784 Msa1079890:CDS 30.0%
GGAAATTGTACCATATCTAA+CGG - chr7_2:79147786-79147805 Msa1079890:CDS 30.0%
AGAATAAAGAGAAAGATGAG+GGG - chr7_2:79147860-79147879 Msa1079890:CDS 30.0%
! GTTAATAAAATGGAGCATCA+TGG - chr7_2:79147964-79147983 Msa1079890:CDS 30.0%
TTTGGATGCAAGTAAAATTG+AGG + chr7_2:79148255-79148274 None:intergenic 30.0%
! TCTATCTATGTTTTCCTCAA+TGG + chr7_2:79148344-79148363 None:intergenic 30.0%
TTTGGGGAAAAAGACAAATA+TGG - chr7_2:79148549-79148568 Msa1079890:five_prime_UTR 30.0%
TCATTTCTTGTGTTTGTGGA+TGG + chr7_2:79146287-79146306 None:intergenic 35.0%
TAGAAATTGTACCGTCGAAA+TGG + chr7_2:79146764-79146783 None:intergenic 35.0%
CAAACTAACGGTTATTGGAA+AGG - chr7_2:79146888-79146907 Msa1079890:three_prime_UTR 35.0%
!!! TCAGATTTTTTGTCTTCGTC+CGG + chr7_2:79147042-79147061 None:intergenic 35.0%
! TGTTTGGAGGATTTTTCTTC+GGG + chr7_2:79147090-79147109 None:intergenic 35.0%
! CTGTTTGGAGGATTTTTCTT+CGG + chr7_2:79147091-79147110 None:intergenic 35.0%
GAAATTTCTAACCTGTTTGG+AGG + chr7_2:79147103-79147122 None:intergenic 35.0%
! TTTACAGTCGGTTCAAAACA+CGG - chr7_2:79147282-79147301 Msa1079890:intron 35.0%
!! TTGGCTAACCTTTGATTTTG+AGG + chr7_2:79147366-79147385 None:intergenic 35.0%
! TTAGCCAATAGCTAGCATTT+TGG - chr7_2:79147378-79147397 Msa1079890:intron 35.0%
AATCAGTGACAAGTGATGAA+GGG - chr7_2:79147725-79147744 Msa1079890:CDS 35.0%
TTCTTACCATCCTCTTTCTT+TGG + chr7_2:79147844-79147863 None:intergenic 35.0%
TCAAAAGAAGATCAAAGTGG+TGG - chr7_2:79147892-79147911 Msa1079890:CDS 35.0%
GGTTGCTGATATTGATATTG+AGG + chr7_2:79148234-79148253 None:intergenic 35.0%
TCATCACTAAACATTTGTGG+AGG + chr7_2:79148285-79148304 None:intergenic 35.0%
ATGGTAAAATGCTCACATCA+TGG + chr7_2:79148325-79148344 None:intergenic 35.0%
! ATGTGAGCATTTTACCATTG+AGG - chr7_2:79148327-79148346 Msa1079890:intron 35.0%
ATATAGTTGAACTGTGCCAT+TGG - chr7_2:79148484-79148503 Msa1079890:five_prime_UTR 35.0%
! CTAGATGAGAATCCAGTTTT+GGG - chr7_2:79148532-79148551 Msa1079890:five_prime_UTR 35.0%
! TAGATGAGAATCCAGTTTTG+GGG - chr7_2:79148533-79148552 Msa1079890:five_prime_UTR 35.0%
! TTTGTCTTTTTCCCCAAAAC+TGG + chr7_2:79148547-79148566 None:intergenic 35.0%
TCATTTCTTGTGTTTGTGGA+TGG + chr7_2:79146287-79146306 None:intergenic 35.0%
TAGAAATTGTACCGTCGAAA+TGG + chr7_2:79146764-79146783 None:intergenic 35.0%
CAAACTAACGGTTATTGGAA+AGG - chr7_2:79146888-79146907 Msa1079890:three_prime_UTR 35.0%
!!! TCAGATTTTTTGTCTTCGTC+CGG + chr7_2:79147042-79147061 None:intergenic 35.0%
! TGTTTGGAGGATTTTTCTTC+GGG + chr7_2:79147090-79147109 None:intergenic 35.0%
! CTGTTTGGAGGATTTTTCTT+CGG + chr7_2:79147091-79147110 None:intergenic 35.0%
GAAATTTCTAACCTGTTTGG+AGG + chr7_2:79147103-79147122 None:intergenic 35.0%
! TTTACAGTCGGTTCAAAACA+CGG - chr7_2:79147282-79147301 Msa1079890:intron 35.0%
!! TTGGCTAACCTTTGATTTTG+AGG + chr7_2:79147366-79147385 None:intergenic 35.0%
! TTAGCCAATAGCTAGCATTT+TGG - chr7_2:79147378-79147397 Msa1079890:intron 35.0%
AATCAGTGACAAGTGATGAA+GGG - chr7_2:79147725-79147744 Msa1079890:CDS 35.0%
TTCTTACCATCCTCTTTCTT+TGG + chr7_2:79147844-79147863 None:intergenic 35.0%
TCAAAAGAAGATCAAAGTGG+TGG - chr7_2:79147892-79147911 Msa1079890:CDS 35.0%
GGTTGCTGATATTGATATTG+AGG + chr7_2:79148234-79148253 None:intergenic 35.0%
TCATCACTAAACATTTGTGG+AGG + chr7_2:79148285-79148304 None:intergenic 35.0%
ATGGTAAAATGCTCACATCA+TGG + chr7_2:79148325-79148344 None:intergenic 35.0%
! ATGTGAGCATTTTACCATTG+AGG - chr7_2:79148327-79148346 Msa1079890:intron 35.0%
ATATAGTTGAACTGTGCCAT+TGG - chr7_2:79148484-79148503 Msa1079890:five_prime_UTR 35.0%
! CTAGATGAGAATCCAGTTTT+GGG - chr7_2:79148532-79148551 Msa1079890:five_prime_UTR 35.0%
! TAGATGAGAATCCAGTTTTG+GGG - chr7_2:79148533-79148552 Msa1079890:five_prime_UTR 35.0%
! TTTGTCTTTTTCCCCAAAAC+TGG + chr7_2:79148547-79148566 None:intergenic 35.0%
AACTAACCTGACCCATTTGT+TGG + chr7_2:79146489-79146508 None:intergenic 40.0%
CCAGTTTCAAAACGACAGAA+GGG + chr7_2:79146695-79146714 None:intergenic 40.0%
TCCAGTTTCAAAACGACAGA+AGG + chr7_2:79146696-79146715 None:intergenic 40.0%
AAACTGGACTTACATTGCGA+AGG - chr7_2:79146708-79146727 Msa1079890:three_prime_UTR 40.0%
AAAAATCGATGATGCAGGTG+TGG - chr7_2:79146837-79146856 Msa1079890:three_prime_UTR 40.0%
AGTTTATCACGAACCTTGTG+AGG + chr7_2:79146919-79146938 None:intergenic 40.0%
TCACAAGGTTCGTGATAAAC+TGG - chr7_2:79146918-79146937 Msa1079890:three_prime_UTR 40.0%
GGCGGAGAAAATTAAGAAGA+AGG - chr7_2:79146939-79146958 Msa1079890:three_prime_UTR 40.0%
TCAGGAGAAGAAGAAGAAAC+CGG - chr7_2:79147020-79147039 Msa1079890:three_prime_UTR 40.0%
GGACGAAGACAAAAAATCTG+AGG - chr7_2:79147041-79147060 Msa1079890:three_prime_UTR 40.0%
ATCTGAGGAGAAAAAAACCG+AGG - chr7_2:79147056-79147075 Msa1079890:three_prime_UTR 40.0%
CGAAGAAAAATCCTCCAAAC+AGG - chr7_2:79147089-79147108 Msa1079890:three_prime_UTR 40.0%
TTTCTTCGATACCGTTAGCA+GGG - chr7_2:79147128-79147147 Msa1079890:three_prime_UTR 40.0%
AAGGCCAAAATGCTAGCTAT+TGG + chr7_2:79147385-79147404 None:intergenic 40.0%
TCGTTTGAGCTAAGGGATAA+AGG + chr7_2:79147649-79147668 None:intergenic 40.0%
GAATCAGTGACAAGTGATGA+AGG - chr7_2:79147724-79147743 Msa1079890:CDS 40.0%
AAGTGATGAAGGGAAGGATT+TGG - chr7_2:79147735-79147754 Msa1079890:CDS 40.0%
!! AAGGATTTGGTGACGGTAAA+AGG - chr7_2:79147748-79147767 Msa1079890:CDS 40.0%
TTCAGCTTCTCCGTTAGATA+TGG + chr7_2:79147799-79147818 None:intergenic 40.0%
TGTGGTTCAACCAAAGAAAG+AGG - chr7_2:79147831-79147850 Msa1079890:CDS 40.0%
GTTCAACCAAAGAAAGAGGA+TGG - chr7_2:79147835-79147854 Msa1079890:CDS 40.0%
GAAAGAGGGAGAAAAAGCAA+AGG - chr7_2:79147921-79147940 Msa1079890:CDS 40.0%
! AAAATGGAGCATCATGGGTA+CGG - chr7_2:79147970-79147989 Msa1079890:CDS 40.0%
CACATCAAACTCCTATGTAC+TGG - chr7_2:79147998-79148017 Msa1079890:CDS 40.0%
! ACTTGATGATTCGAATACCC+CGG + chr7_2:79148093-79148112 None:intergenic 40.0%
TATGTGAACCAACACCAACA+AGG - chr7_2:79148156-79148175 Msa1079890:intron 40.0%
ATGTGAACCAACACCAACAA+GGG - chr7_2:79148157-79148176 Msa1079890:intron 40.0%
AATCATACCCTTGTTGGTGT+TGG + chr7_2:79148167-79148186 None:intergenic 40.0%
TATGTGAATCATCAAGGCCA+AGG - chr7_2:79148192-79148211 Msa1079890:CDS 40.0%
! ATTTGTGGAGGAGGTTGATT+TGG + chr7_2:79148273-79148292 None:intergenic 40.0%
TCACTAAACATTTGTGGAGG+AGG + chr7_2:79148282-79148301 None:intergenic 40.0%
CACATCATGGAACAAGCATT+CGG + chr7_2:79148312-79148331 None:intergenic 40.0%
AAACTGGATTCTCATCTAGC+AGG + chr7_2:79148531-79148550 None:intergenic 40.0%
! GCTAGATGAGAATCCAGTTT+TGG - chr7_2:79148531-79148550 Msa1079890:five_prime_UTR 40.0%
AACTAACCTGACCCATTTGT+TGG + chr7_2:79146489-79146508 None:intergenic 40.0%
CCAGTTTCAAAACGACAGAA+GGG + chr7_2:79146695-79146714 None:intergenic 40.0%
TCCAGTTTCAAAACGACAGA+AGG + chr7_2:79146696-79146715 None:intergenic 40.0%
AAACTGGACTTACATTGCGA+AGG - chr7_2:79146708-79146727 Msa1079890:three_prime_UTR 40.0%
AAAAATCGATGATGCAGGTG+TGG - chr7_2:79146837-79146856 Msa1079890:three_prime_UTR 40.0%
AGTTTATCACGAACCTTGTG+AGG + chr7_2:79146919-79146938 None:intergenic 40.0%
TCACAAGGTTCGTGATAAAC+TGG - chr7_2:79146918-79146937 Msa1079890:three_prime_UTR 40.0%
GGCGGAGAAAATTAAGAAGA+AGG - chr7_2:79146939-79146958 Msa1079890:three_prime_UTR 40.0%
TCAGGAGAAGAAGAAGAAAC+CGG - chr7_2:79147020-79147039 Msa1079890:three_prime_UTR 40.0%
GGACGAAGACAAAAAATCTG+AGG - chr7_2:79147041-79147060 Msa1079890:three_prime_UTR 40.0%
ATCTGAGGAGAAAAAAACCG+AGG - chr7_2:79147056-79147075 Msa1079890:three_prime_UTR 40.0%
CGAAGAAAAATCCTCCAAAC+AGG - chr7_2:79147089-79147108 Msa1079890:three_prime_UTR 40.0%
TTTCTTCGATACCGTTAGCA+GGG - chr7_2:79147128-79147147 Msa1079890:three_prime_UTR 40.0%
AAGGCCAAAATGCTAGCTAT+TGG + chr7_2:79147385-79147404 None:intergenic 40.0%
TCGTTTGAGCTAAGGGATAA+AGG + chr7_2:79147649-79147668 None:intergenic 40.0%
GAATCAGTGACAAGTGATGA+AGG - chr7_2:79147724-79147743 Msa1079890:CDS 40.0%
AAGTGATGAAGGGAAGGATT+TGG - chr7_2:79147735-79147754 Msa1079890:CDS 40.0%
!! AAGGATTTGGTGACGGTAAA+AGG - chr7_2:79147748-79147767 Msa1079890:CDS 40.0%
TTCAGCTTCTCCGTTAGATA+TGG + chr7_2:79147799-79147818 None:intergenic 40.0%
TGTGGTTCAACCAAAGAAAG+AGG - chr7_2:79147831-79147850 Msa1079890:CDS 40.0%
GTTCAACCAAAGAAAGAGGA+TGG - chr7_2:79147835-79147854 Msa1079890:CDS 40.0%
GAAAGAGGGAGAAAAAGCAA+AGG - chr7_2:79147921-79147940 Msa1079890:CDS 40.0%
! AAAATGGAGCATCATGGGTA+CGG - chr7_2:79147970-79147989 Msa1079890:CDS 40.0%
CACATCAAACTCCTATGTAC+TGG - chr7_2:79147998-79148017 Msa1079890:CDS 40.0%
! ACTTGATGATTCGAATACCC+CGG + chr7_2:79148093-79148112 None:intergenic 40.0%
TATGTGAACCAACACCAACA+AGG - chr7_2:79148156-79148175 Msa1079890:intron 40.0%
ATGTGAACCAACACCAACAA+GGG - chr7_2:79148157-79148176 Msa1079890:intron 40.0%
AATCATACCCTTGTTGGTGT+TGG + chr7_2:79148167-79148186 None:intergenic 40.0%
TATGTGAATCATCAAGGCCA+AGG - chr7_2:79148192-79148211 Msa1079890:CDS 40.0%
! ATTTGTGGAGGAGGTTGATT+TGG + chr7_2:79148273-79148292 None:intergenic 40.0%
TCACTAAACATTTGTGGAGG+AGG + chr7_2:79148282-79148301 None:intergenic 40.0%
CACATCATGGAACAAGCATT+CGG + chr7_2:79148312-79148331 None:intergenic 40.0%
AAACTGGATTCTCATCTAGC+AGG + chr7_2:79148531-79148550 None:intergenic 40.0%
! GCTAGATGAGAATCCAGTTT+TGG - chr7_2:79148531-79148550 Msa1079890:five_prime_UTR 40.0%
ATGAGTCACAATCAGTGAGG+TGG + chr7_2:79146343-79146362 None:intergenic 45.0%
TGGATGAGTCACAATCAGTG+AGG + chr7_2:79146346-79146365 None:intergenic 45.0%
AGAGTCAAAGAGAGTGACTG+TGG + chr7_2:79146366-79146385 None:intergenic 45.0%
CATACACCAACAAATGGGTC+AGG - chr7_2:79146480-79146499 Msa1079890:three_prime_UTR 45.0%
!!! CCCTTCTGTCGTTTTGAAAC+TGG - chr7_2:79146692-79146711 Msa1079890:three_prime_UTR 45.0%
TGTCAAGAAGATCAAACGCG+CGG - chr7_2:79146734-79146753 Msa1079890:three_prime_UTR 45.0%
TGGAAAGGTAGATCCTCACA+AGG - chr7_2:79146903-79146922 Msa1079890:three_prime_UTR 45.0%
CAAGGTTCGTGATAAACTGG+CGG - chr7_2:79146921-79146940 Msa1079890:three_prime_UTR 45.0%
!!! GTCTTTTTTAGGCTGAGGGA+AGG + chr7_2:79146977-79146996 None:intergenic 45.0%
CTTCTCCTGAGGTTTATCTG+CGG + chr7_2:79147010-79147029 None:intergenic 45.0%
GGTTTCTTCTTCTTCTCCTG+AGG + chr7_2:79147021-79147040 None:intergenic 45.0%
! TTCTTCGGGTTTCTTCTCCT+CGG + chr7_2:79147076-79147095 None:intergenic 45.0%
CTTTCTTCGATACCGTTAGC+AGG - chr7_2:79147127-79147146 Msa1079890:three_prime_UTR 45.0%
TTCGATTTCGTCCCTGCTAA+CGG + chr7_2:79147142-79147161 None:intergenic 45.0%
TTAGTGAGAACAAAGCGTGG+AGG + chr7_2:79147242-79147261 None:intergenic 45.0%
GAGTAGCTCGTTTGAGCTAA+GGG + chr7_2:79147656-79147675 None:intergenic 45.0%
TGAGTAGCTCGTTTGAGCTA+AGG + chr7_2:79147657-79147676 None:intergenic 45.0%
AACGAGCTACTCAATCCATG+TGG - chr7_2:79147664-79147683 Msa1079890:three_prime_UTR 45.0%
AGTGACAAGTGATGAAGGGA+AGG - chr7_2:79147729-79147748 Msa1079890:CDS 45.0%
!! TGAAGGGAAGGATTTGGTGA+CGG - chr7_2:79147741-79147760 Msa1079890:CDS 45.0%
ATCTAACGGAGAAGCTGAAG+CGG - chr7_2:79147800-79147819 Msa1079890:CDS 45.0%
! AAGTGGTGGTGAGAAGAAAG+AGG - chr7_2:79147906-79147925 Msa1079890:CDS 45.0%
! AGTGGTGGTGAGAAGAAAGA+GGG - chr7_2:79147907-79147926 Msa1079890:CDS 45.0%
GAGGGAGAAAAAGCAAAGGA+AGG - chr7_2:79147925-79147944 Msa1079890:CDS 45.0%
GGAGAAAAAGCAAAGGAAGG+CGG - chr7_2:79147928-79147947 Msa1079890:CDS 45.0%
! AAATGGAGCATCATGGGTAC+GGG - chr7_2:79147971-79147990 Msa1079890:CDS 45.0%
! ACTCCTATGTACTGGTACGA+CGG - chr7_2:79148006-79148025 Msa1079890:CDS 45.0%
TATCCGTCGTACCAGTACAT+AGG + chr7_2:79148012-79148031 None:intergenic 45.0%
TGAATCATCAAGGCCAAGGT+GGG - chr7_2:79148196-79148215 Msa1079890:CDS 45.0%
ATGAGTCACAATCAGTGAGG+TGG + chr7_2:79146343-79146362 None:intergenic 45.0%
TGGATGAGTCACAATCAGTG+AGG + chr7_2:79146346-79146365 None:intergenic 45.0%
AGAGTCAAAGAGAGTGACTG+TGG + chr7_2:79146366-79146385 None:intergenic 45.0%
CATACACCAACAAATGGGTC+AGG - chr7_2:79146480-79146499 Msa1079890:three_prime_UTR 45.0%
!!! CCCTTCTGTCGTTTTGAAAC+TGG - chr7_2:79146692-79146711 Msa1079890:three_prime_UTR 45.0%
TGTCAAGAAGATCAAACGCG+CGG - chr7_2:79146734-79146753 Msa1079890:three_prime_UTR 45.0%
TGGAAAGGTAGATCCTCACA+AGG - chr7_2:79146903-79146922 Msa1079890:three_prime_UTR 45.0%
CAAGGTTCGTGATAAACTGG+CGG - chr7_2:79146921-79146940 Msa1079890:three_prime_UTR 45.0%
!!! GTCTTTTTTAGGCTGAGGGA+AGG + chr7_2:79146977-79146996 None:intergenic 45.0%
CTTCTCCTGAGGTTTATCTG+CGG + chr7_2:79147010-79147029 None:intergenic 45.0%
GGTTTCTTCTTCTTCTCCTG+AGG + chr7_2:79147021-79147040 None:intergenic 45.0%
! TTCTTCGGGTTTCTTCTCCT+CGG + chr7_2:79147076-79147095 None:intergenic 45.0%
CTTTCTTCGATACCGTTAGC+AGG - chr7_2:79147127-79147146 Msa1079890:three_prime_UTR 45.0%
TTCGATTTCGTCCCTGCTAA+CGG + chr7_2:79147142-79147161 None:intergenic 45.0%
TTAGTGAGAACAAAGCGTGG+AGG + chr7_2:79147242-79147261 None:intergenic 45.0%
GAGTAGCTCGTTTGAGCTAA+GGG + chr7_2:79147656-79147675 None:intergenic 45.0%
TGAGTAGCTCGTTTGAGCTA+AGG + chr7_2:79147657-79147676 None:intergenic 45.0%
AACGAGCTACTCAATCCATG+TGG - chr7_2:79147664-79147683 Msa1079890:three_prime_UTR 45.0%
AGTGACAAGTGATGAAGGGA+AGG - chr7_2:79147729-79147748 Msa1079890:CDS 45.0%
!! TGAAGGGAAGGATTTGGTGA+CGG - chr7_2:79147741-79147760 Msa1079890:CDS 45.0%
ATCTAACGGAGAAGCTGAAG+CGG - chr7_2:79147800-79147819 Msa1079890:CDS 45.0%
! AAGTGGTGGTGAGAAGAAAG+AGG - chr7_2:79147906-79147925 Msa1079890:CDS 45.0%
! AGTGGTGGTGAGAAGAAAGA+GGG - chr7_2:79147907-79147926 Msa1079890:CDS 45.0%
GAGGGAGAAAAAGCAAAGGA+AGG - chr7_2:79147925-79147944 Msa1079890:CDS 45.0%
GGAGAAAAAGCAAAGGAAGG+CGG - chr7_2:79147928-79147947 Msa1079890:CDS 45.0%
! AAATGGAGCATCATGGGTAC+GGG - chr7_2:79147971-79147990 Msa1079890:CDS 45.0%
! ACTCCTATGTACTGGTACGA+CGG - chr7_2:79148006-79148025 Msa1079890:CDS 45.0%
TATCCGTCGTACCAGTACAT+AGG + chr7_2:79148012-79148031 None:intergenic 45.0%
TGAATCATCAAGGCCAAGGT+GGG - chr7_2:79148196-79148215 Msa1079890:CDS 45.0%
!!! TAATTATTATTTTTTTAATC+CGG - chr7_2:79147552-79147571 Msa1079890:intron 5.0%
!!! GTTTTTTTATATAATAAATT+AGG - chr7_2:79148451-79148470 Msa1079890:five_prime_UTR 5.0%
!!! ATATATAAATAAATCATTTT+TGG - chr7_2:79148637-79148656 Msa1079890:five_prime_UTR 5.0%
!!! TAATTATTATTTTTTTAATC+CGG - chr7_2:79147552-79147571 Msa1079890:intron 5.0%
!!! GTTTTTTTATATAATAAATT+AGG - chr7_2:79148451-79148470 Msa1079890:five_prime_UTR 5.0%
!!! ATATATAAATAAATCATTTT+TGG - chr7_2:79148637-79148656 Msa1079890:five_prime_UTR 5.0%
!!! CGGCGTCTTTTTTAGGCTGA+GGG + chr7_2:79146981-79147000 None:intergenic 50.0%
CGGTTAGTGAGAACAAAGCG+TGG + chr7_2:79147245-79147264 None:intergenic 50.0%
AGCAAAGGAAGGCGGAACTA+AGG - chr7_2:79147936-79147955 Msa1079890:CDS 50.0%
CTGGTACGACGGATATGAAC+CGG - chr7_2:79148017-79148036 Msa1079890:CDS 50.0%
TGGTACGACGGATATGAACC+GGG - chr7_2:79148018-79148037 Msa1079890:CDS 50.0%
GAACCGGGTCAAAGTAGTAG+TGG - chr7_2:79148033-79148052 Msa1079890:CDS 50.0%
CCACCACTACTACTTTGACC+CGG + chr7_2:79148039-79148058 None:intergenic 50.0%
GGTCAAAGTAGTAGTGGTGG+TGG - chr7_2:79148039-79148058 Msa1079890:CDS 50.0%
GTGAATCATCAAGGCCAAGG+TGG - chr7_2:79148195-79148214 Msa1079890:CDS 50.0%
!!! CGGCGTCTTTTTTAGGCTGA+GGG + chr7_2:79146981-79147000 None:intergenic 50.0%
CGGTTAGTGAGAACAAAGCG+TGG + chr7_2:79147245-79147264 None:intergenic 50.0%
AGCAAAGGAAGGCGGAACTA+AGG - chr7_2:79147936-79147955 Msa1079890:CDS 50.0%
CTGGTACGACGGATATGAAC+CGG - chr7_2:79148017-79148036 Msa1079890:CDS 50.0%
TGGTACGACGGATATGAACC+GGG - chr7_2:79148018-79148037 Msa1079890:CDS 50.0%
GAACCGGGTCAAAGTAGTAG+TGG - chr7_2:79148033-79148052 Msa1079890:CDS 50.0%
CCACCACTACTACTTTGACC+CGG + chr7_2:79148039-79148058 None:intergenic 50.0%
GGTCAAAGTAGTAGTGGTGG+TGG - chr7_2:79148039-79148058 Msa1079890:CDS 50.0%
GTGAATCATCAAGGCCAAGG+TGG - chr7_2:79148195-79148214 Msa1079890:CDS 50.0%
!!! GCGGCGTCTTTTTTAGGCTG+AGG + chr7_2:79146982-79147001 None:intergenic 55.0%
TCCTGAGGTTTATCTGCGGC+GGG + chr7_2:79147006-79147025 None:intergenic 55.0%
CTCCTGAGGTTTATCTGCGG+CGG + chr7_2:79147007-79147026 None:intergenic 55.0%
GGAGAAGCTGAAGCGGAATG+TGG - chr7_2:79147807-79147826 Msa1079890:CDS 55.0%
GCTGAAGCGGAATGTGGATG+TGG - chr7_2:79147813-79147832 Msa1079890:CDS 55.0%
CCGGGTCAAAGTAGTAGTGG+TGG - chr7_2:79148036-79148055 Msa1079890:CDS 55.0%
CTACGCGATGCAAGTTCAGC+CGG - chr7_2:79148071-79148090 Msa1079890:intron 55.0%
TACGCGATGCAAGTTCAGCC+GGG - chr7_2:79148072-79148091 Msa1079890:intron 55.0%
TCAAGGCCAAGGTGGGCATA+TGG - chr7_2:79148203-79148222 Msa1079890:CDS 55.0%
GTTCCACCATATGCCCACCT+TGG + chr7_2:79148212-79148231 None:intergenic 55.0%
! TGAACTGTGCCATTGGCGCA+TGG - chr7_2:79148491-79148510 Msa1079890:five_prime_UTR 55.0%
CGTCACTAACCATGCGCCAA+TGG + chr7_2:79148503-79148522 None:intergenic 55.0%
GGCGCATGGTTAGTGACGTA+CGG - chr7_2:79148505-79148524 Msa1079890:five_prime_UTR 55.0%
!!! GCGGCGTCTTTTTTAGGCTG+AGG + chr7_2:79146982-79147001 None:intergenic 55.0%
TCCTGAGGTTTATCTGCGGC+GGG + chr7_2:79147006-79147025 None:intergenic 55.0%
CTCCTGAGGTTTATCTGCGG+CGG + chr7_2:79147007-79147026 None:intergenic 55.0%
GGAGAAGCTGAAGCGGAATG+TGG - chr7_2:79147807-79147826 Msa1079890:CDS 55.0%
GCTGAAGCGGAATGTGGATG+TGG - chr7_2:79147813-79147832 Msa1079890:CDS 55.0%
CCGGGTCAAAGTAGTAGTGG+TGG - chr7_2:79148036-79148055 Msa1079890:CDS 55.0%
CTACGCGATGCAAGTTCAGC+CGG - chr7_2:79148071-79148090 Msa1079890:intron 55.0%
TACGCGATGCAAGTTCAGCC+GGG - chr7_2:79148072-79148091 Msa1079890:intron 55.0%
TCAAGGCCAAGGTGGGCATA+TGG - chr7_2:79148203-79148222 Msa1079890:CDS 55.0%
GTTCCACCATATGCCCACCT+TGG + chr7_2:79148212-79148231 None:intergenic 55.0%
! TGAACTGTGCCATTGGCGCA+TGG - chr7_2:79148491-79148510 Msa1079890:five_prime_UTR 55.0%
CGTCACTAACCATGCGCCAA+TGG + chr7_2:79148503-79148522 None:intergenic 55.0%
GGCGCATGGTTAGTGACGTA+CGG - chr7_2:79148505-79148524 Msa1079890:five_prime_UTR 55.0%
CTGAGGTTTATCTGCGGCGG+GGG + chr7_2:79147004-79147023 None:intergenic 60.0%
CCTGAGGTTTATCTGCGGCG+GGG + chr7_2:79147005-79147024 None:intergenic 60.0%
ACGCGATGCAAGTTCAGCCG+GGG - chr7_2:79148073-79148092 Msa1079890:intron 60.0%
AGGCCAAGGTGGGCATATGG+TGG - chr7_2:79148206-79148225 Msa1079890:CDS 60.0%
CTGAGGTTTATCTGCGGCGG+GGG + chr7_2:79147004-79147023 None:intergenic 60.0%
CCTGAGGTTTATCTGCGGCG+GGG + chr7_2:79147005-79147024 None:intergenic 60.0%
ACGCGATGCAAGTTCAGCCG+GGG - chr7_2:79148073-79148092 Msa1079890:intron 60.0%
AGGCCAAGGTGGGCATATGG+TGG - chr7_2:79148206-79148225 Msa1079890:CDS 60.0%
CGCGCGGTTCGCCATTTCGA+CGG - chr7_2:79146750-79146769 Msa1079890:three_prime_UTR 65.0%
!!! GCGGGGGCGGCGTCTTTTTT+AGG + chr7_2:79146988-79147007 None:intergenic 65.0%
AGGTTTATCTGCGGCGGGGG+CGG + chr7_2:79147001-79147020 None:intergenic 65.0%
CCCCGCCGCAGATAAACCTC+AGG - chr7_2:79147002-79147021 Msa1079890:three_prime_UTR 65.0%
CGCGCGGTTCGCCATTTCGA+CGG - chr7_2:79146750-79146769 Msa1079890:three_prime_UTR 65.0%
!!! GCGGGGGCGGCGTCTTTTTT+AGG + chr7_2:79146988-79147007 None:intergenic 65.0%
AGGTTTATCTGCGGCGGGGG+CGG + chr7_2:79147001-79147020 None:intergenic 65.0%
CCCCGCCGCAGATAAACCTC+AGG - chr7_2:79147002-79147021 Msa1079890:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 79146277 79148664 79146277 ID=Msa1079890;Name=Msa1079890
chr7_2 mRNA 79146277 79148664 79146277 ID=Msa1079890-mRNA-1;Parent=Msa1079890;Name=Msa1079890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=216|0.66|0.75|1|1|0.75|4|1104|160
chr7_2 exon 79146277 79147222 79146277 ID=Msa1079890-mRNA-1:exon:19829;Parent=Msa1079890-mRNA-1
chr7_2 exon 79147565 79148087 79147565 ID=Msa1079890-mRNA-1:exon:19828;Parent=Msa1079890-mRNA-1
chr7_2 exon 79148170 79148278 79148170 ID=Msa1079890-mRNA-1:exon:19827;Parent=Msa1079890-mRNA-1
chr7_2 exon 79148440 79148664 79148440 ID=Msa1079890-mRNA-1:exon:19826;Parent=Msa1079890-mRNA-1
chr7_2 five_prime_UTR 79148449 79148664 79148449 ID=Msa1079890-mRNA-1:five_prime_utr;Parent=Msa1079890-mRNA-1
chr7_2 CDS 79148440 79148448 79148440 ID=Msa1079890-mRNA-1:cds;Parent=Msa1079890-mRNA-1
chr7_2 CDS 79148170 79148278 79148170 ID=Msa1079890-mRNA-1:cds;Parent=Msa1079890-mRNA-1
chr7_2 CDS 79147723 79148087 79147723 ID=Msa1079890-mRNA-1:cds;Parent=Msa1079890-mRNA-1
chr7_2 three_prime_UTR 79147565 79147722 79147565 ID=Msa1079890-mRNA-1:three_prime_utr;Parent=Msa1079890-mRNA-1
chr7_2 three_prime_UTR 79146277 79147222 79146277 ID=Msa1079890-mRNA-1:three_prime_utr;Parent=Msa1079890-mRNA-1
Gene Sequence

>Msa1079890

ATGGGTCAGCAGAAAGATGAGATAAAAAACGACGATATCCCTTCTGTCGTTTTGAAACTGGACTTACATTGCGAAGGATGTGTCAAGAAGATCAAACGCGCGGTTCGCCATTTCGACGGTGTGGAAGTCGTTAAAGCAGATACGCCAAATAACAAACTAACGGTTATTGGAAAGGTAGATCCTCACAAGGTTCGTGATAAACTGGCGGAGAAAATTAAGAAGAAGGTTGAGCTTGTTTCCTTCCCTCAGCCTAAAAAAGACGCCGCCCCCGCCGCAGATAAACCTCAGGAGAAGAAGAAGAAACCGGACGAAGACAAAAAATCTGAGGAGAAAAAAACCGAGGAGAAGAAACCCGAAGAAAAATCCTCCAAACAGGTTAGAAATTTCATTACTTTCTTCGATACCGTTAGCAGGGACGAAATCGAAATAAATTTCATCGCAATTGATTCAGAATTGACTCGTTTTCTTCTTTTTCCGTGTTGA
Protein sequence

>Msa1079890

MGQQKDEIKNDDIPSVVLKLDLHCEGCVKKIKRAVRHFDGVEVVKADTPNNKLTVIGKVDPHKVRDKLAEKIKKKVELVSFPQPKKDAAPAADKPQEKKKKPDEDKKSEEKKTEEKKPEEKSSKQVRNFITFFDTVSRDEIEINFIAIDSELTRFLLFPC*