AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1417320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417320 MtrunA17_Chr7g0264601 88.525 366 25 3 1 366 1 349 0.0 516
Msa1417320 MtrunA17_Chr1g0180631 46.032 378 147 11 1 366 1 333 6.09e-72 227
Msa1417320 MtrunA17_Chr4g0028461 37.216 352 127 8 15 366 67 324 3.45e-49 168
Msa1417320 MtrunA17_Chr2g0327311 42.784 194 78 6 15 202 66 232 6.19e-33 125
Msa1417320 MtrunA17_Chr3g0094841 31.776 214 104 5 15 224 27 202 9.14e-22 92.8
Msa1417320 MtrunA17_Chr8g0386231 34.574 188 98 3 16 202 53 216 1.76e-21 93.6
Msa1417320 MtrunA17_Chr5g0429111 28.495 186 98 2 17 202 56 206 3.01e-20 90.1
Msa1417320 MtrunA17_Chr5g0429111 44.615 65 36 0 140 204 56 120 4.33e-11 63.5
Msa1417320 MtrunA17_Chr3g0132051 33.149 181 92 4 16 195 36 188 3.98e-19 86.3
Msa1417320 MtrunA17_Chr6g0454851 60.938 64 25 0 15 78 19 82 3.01e-16 80.5
Msa1417320 MtrunA17_Chr3g0132061 27.053 207 97 4 16 208 36 202 3.02e-15 75.5
Msa1417320 MtrunA17_Chr3g0128091 26.038 265 149 5 17 269 39 268 8.92e-15 73.9
Msa1417320 MtrunA17_Chr8g0337951 27.638 199 109 4 6 202 19 184 2.85e-14 72.0
Msa1417320 MtrunA17_Chr6g0455131 51.220 82 36 2 1 79 1 81 1.25e-13 72.4
Msa1417320 MtrunA17_Chr6g0454951 51.351 74 35 1 6 78 2 75 7.81e-11 63.9
Msa1417320 MtrunA17_Chr2g0290471 47.692 65 34 0 138 202 132 196 9.27e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417320 AT5G03380.1 43.188 389 167 10 13 366 23 392 4.47e-62 204
Msa1417320 AT5G03380.2 42.969 384 165 10 18 366 1 365 2.83e-60 198
Msa1417320 AT2G36950.1 39.747 395 132 12 17 366 53 386 9.10e-58 192
Msa1417320 AT5G60800.1 48.187 193 84 2 15 207 27 203 1.84e-35 131
Msa1417320 AT5G60800.2 48.187 193 84 2 15 207 27 203 3.91e-35 130
Msa1417320 AT2G28090.1 42.553 188 76 3 16 202 31 187 1.55e-26 106
Msa1417320 AT3G02960.1 30.769 195 100 5 16 209 38 198 3.89e-23 97.1
Msa1417320 AT5G50740.5 32.889 225 121 4 16 238 29 225 5.24e-23 97.8
Msa1417320 AT5G50740.1 32.889 225 121 4 16 238 29 225 5.24e-23 97.8
Msa1417320 AT5G50740.3 32.889 225 121 4 16 238 36 232 5.46e-23 97.8
Msa1417320 AT5G63530.2 34.031 191 95 3 16 203 60 222 4.04e-19 87.8
Msa1417320 AT5G63530.1 34.031 191 95 3 16 203 75 237 4.37e-19 87.8
Msa1417320 AT5G24580.4 29.167 192 101 3 17 207 59 216 3.86e-18 84.7
Msa1417320 AT5G24580.1 29.167 192 101 3 17 207 59 216 3.86e-18 84.7
Msa1417320 AT5G24580.2 29.167 192 101 3 17 207 58 215 4.08e-18 84.3
Msa1417320 AT1G29000.1 31.088 193 106 4 11 202 12 178 8.04e-16 77.4
Msa1417320 AT1G29000.2 31.088 193 106 4 11 202 12 178 8.04e-16 77.4
Msa1417320 AT5G24580.3 28.646 192 99 5 17 207 59 213 8.60e-15 74.7
Msa1417320 AT5G50740.2 34.667 150 68 4 16 163 29 150 9.01e-15 71.6
Msa1417320 AT5G50740.4 35.333 150 67 4 16 163 36 157 1.46e-14 71.2

Find 109 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATAAAAGTTGTTTGATTT+TGG 0.150912 tig0024468:-48582 None:intergenic
TTCTTACCATCCTCTTTCTT+TGG 0.219108 tig0024468:-49997 None:intergenic
AATAACAAACTAACGGTTAT+TGG 0.223438 tig0024468:+49013 Msa1417320:CDS
ATAACCGTTAGTTTGTTATT+TGG 0.230170 tig0024468:-49010 None:intergenic
AAGGATTTGGTGACGGTAAA+AGG 0.291312 tig0024468:+49904 Msa1417320:CDS
GCTAGATGAGAATCCAGTTT+TGG 0.305894 tig0024468:+50687 Msa1417320:three_prime_UTR
AATGAAATTTCTAACCTGTT+TGG 0.320845 tig0024468:-49257 None:intergenic
ATTTGTGGAGGAGGTTGATT+TGG 0.324973 tig0024468:-50426 None:intergenic
TAAGGTAGAAGTTAATAAAA+TGG 0.325065 tig0024468:+50110 Msa1417320:CDS
GTATTAGTTTAATTTAGTTT+TGG 0.337285 tig0024468:+50580 Msa1417320:three_prime_UTR
ACCTGAGGTTTATCTGCCGC+GGG 0.374480 tig0024468:-49133 None:intergenic
TAGAAATTGTACCGTCGAAA+TGG 0.400716 tig0024468:-48891 None:intergenic
CATATACATACACCAACAAA+TGG 0.404953 tig0024468:+48604 Msa1417320:exon
AATTATAATCATACCCTTGT+TGG 0.413275 tig0024468:-50326 None:intergenic
TTCAGCTTCTCCGTTAGATA+TGG 0.416992 tig0024468:-49952 None:intergenic
TCACAAGGTTCGTGATAAAC+TGG 0.419797 tig0024468:+49048 Msa1417320:CDS
GTTAATAAAATGGAGTATCA+TGG 0.420255 tig0024468:+50120 Msa1417320:CDS
CTGGTACGACGGATATGAAC+CGG 0.424635 tig0024468:+50173 Msa1417320:CDS
TTCTTCGGGTTTCTTCTCCT+CGG 0.448426 tig0024468:-49227 None:intergenic
GAAATTTCTAACCTGTTTGG+AGG 0.452842 tig0024468:-49254 None:intergenic
AACTAACCTGACCCATTTGT+TGG 0.453337 tig0024468:-48616 None:intergenic
AATCATACCCTTGTTGGTGT+TGG 0.457276 tig0024468:-50320 None:intergenic
AACGGAAACAACGTATATAT+AGG 0.460689 tig0024468:-48519 None:intergenic
TCAAGGCCAAGGTGGGCATA+TGG 0.461955 tig0024468:+50359 Msa1417320:CDS
TATAATTATGTGAATCAAGA+AGG 0.465519 tig0024468:+50276 Msa1417320:CDS
AAGAATAAAGAGAAAGATGA+GGG 0.468853 tig0024468:+50015 Msa1417320:CDS
TCATTTCTTGTGTTTGTGGA+TGG 0.469352 tig0024468:-48414 None:intergenic
AGCAAAGGAAGGCGGAACTA+AGG 0.479726 tig0024468:+50092 Msa1417320:CDS
CTACGCGATGCAAGTTCAGC+CGG 0.480734 tig0024468:+50227 Msa1417320:CDS
TCACTAAACATTTGTGGAGG+AGG 0.485000 tig0024468:-50435 None:intergenic
AAGTGATGAAGGGAAGGATT+TGG 0.486380 tig0024468:+49891 Msa1417320:CDS
CACATCATGGAACAAGCATT+CGG 0.498057 tig0024468:-50465 None:intergenic
AAAATGGAGTATCATGGGTA+CGG 0.503330 tig0024468:+50126 Msa1417320:CDS
CACCTGAGGTTTATCTGCCG+CGG 0.505116 tig0024468:-49134 None:intergenic
TCCAGTTTCAAAACGACAGA+AGG 0.505925 tig0024468:-48823 None:intergenic
AAGTGGTGGTGAGAAGAAAG+AGG 0.507353 tig0024468:+50062 Msa1417320:CDS
GAATCAGTGACAAGTGATGA+AGG 0.507632 tig0024468:+49880 Msa1417320:CDS
GGTTGCTGATATTGATATTG+AGG 0.508034 tig0024468:-50387 None:intergenic
ATGGTAAAATGCTCACATCA+TGG 0.510934 tig0024468:-50478 None:intergenic
TATAATTATGTGAATCATCA+AGG 0.516463 tig0024468:+50342 Msa1417320:CDS
CACATCAAACTCCTATGTAC+TGG 0.518155 tig0024468:+50154 Msa1417320:CDS
AGTGGTGGTGAGAAGAAAGA+GGG 0.519522 tig0024468:+50063 Msa1417320:CDS
CGCGCGGTTCGCCATTTCGA+CGG 0.520039 tig0024468:+48880 Msa1417320:CDS
CGTCACTAACCATGCGCCAA+TGG 0.522421 tig0024468:-50656 None:intergenic
AAATGGAGTATCATGGGTAC+GGG 0.528189 tig0024468:+50127 Msa1417320:CDS
GGCGGAGAAAATTAAGAAGA+AGG 0.528996 tig0024468:+49069 Msa1417320:CDS
TTAATAAAATGGAGTATCAT+GGG 0.530271 tig0024468:+50121 Msa1417320:CDS
TACGCGATGCAAGTTCAGCC+GGG 0.533998 tig0024468:+50228 Msa1417320:CDS
ATATAGTTGAACTGTGCCAT+TGG 0.535420 tig0024468:+50640 Msa1417320:three_prime_UTR
TTTGGATGCAAGTAAAATTG+AGG 0.542852 tig0024468:-50408 None:intergenic
TTTACAGTCGGTTCAAAACA+CGG 0.543169 tig0024468:+49436 Msa1417320:intron
TGAGGAGAAGAAGAAGAAAC+CGG 0.545003 tig0024468:+49174 Msa1417320:CDS
TCGTGATTCTTCTTCACCTG+AGG 0.545072 tig0024468:-49148 None:intergenic
AAACTGGATTCTCATCTAGC+AGG 0.547301 tig0024468:-50684 None:intergenic
GTAAATTAAGTATGAAGCAA+CGG 0.557538 tig0024468:-48537 None:intergenic
AAGATTAAATTACATTGTGA+TGG 0.558652 tig0024468:+49467 Msa1417320:CDS
ATAATTATGTGAATCAAGAA+GGG 0.563769 tig0024468:+50277 Msa1417320:CDS
AAAAGGAACAATAGATGCAA+AGG 0.563969 tig0024468:+49921 Msa1417320:CDS
AAGATTATCCTCAAAATCAA+AGG 0.564498 tig0024468:+49509 Msa1417320:CDS
CATACACCAACAAATGGGTC+AGG 0.565091 tig0024468:+48610 Msa1417320:exon
CCGGGTCAAAGTAGTGGTGG+TGG 0.566296 tig0024468:+50192 Msa1417320:CDS
CCCCGCGGCAGATAAACCTC+AGG 0.566427 tig0024468:+49132 Msa1417320:CDS
ATATACATACACCAACAAAT+GGG 0.570058 tig0024468:+48605 Msa1417320:exon
TGTGGTTCAACCAAAGAAAG+AGG 0.576487 tig0024468:+49987 Msa1417320:CDS
ACTCCTATGTACTGGTACGA+CGG 0.580031 tig0024468:+50162 Msa1417320:CDS
CCACCACCACTACTTTGACC+CGG 0.580692 tig0024468:-50192 None:intergenic
GGAAATTGTACCATATCTAA+CGG 0.582528 tig0024468:+49942 Msa1417320:CDS
AGTTTATCACGAACCTTGTG+AGG 0.583513 tig0024468:-49046 None:intergenic
AGTGACAAGTGATGAAGGGA+AGG 0.584358 tig0024468:+49885 Msa1417320:CDS
GGCGCATGGTTAGTGACGTA+CGG 0.588300 tig0024468:+50661 Msa1417320:three_prime_UTR
GGAGAAGCTGAAGCGGAATG+TGG 0.588949 tig0024468:+49963 Msa1417320:CDS
TAAGAATAAAGAGAAAGATG+AGG 0.590847 tig0024468:+50014 Msa1417320:CDS
ATCTAACGGAGAAGCTGAAG+CGG 0.591313 tig0024468:+49956 Msa1417320:CDS
GTTCCACCATATGCCCACCT+TGG 0.591927 tig0024468:-50365 None:intergenic
TATCCGTCGTACCAGTACAT+AGG 0.593400 tig0024468:-50165 None:intergenic
GGTCAAAGTAGTGGTGGTGG+TGG 0.595121 tig0024468:+50195 Msa1417320:CDS
GTTCAACCAAAGAAAGAGGA+TGG 0.595685 tig0024468:+49991 Msa1417320:CDS
TATGTGAATCATCAAGGCCA+AGG 0.596173 tig0024468:+50348 Msa1417320:CDS
CAAACTAACGGTTATTGGAA+AGG 0.597968 tig0024468:+49018 Msa1417320:CDS
AAACTGGACTTACATTGCGA+AGG 0.601860 tig0024468:+48838 Msa1417320:CDS
AGGCCAAGGTGGGCATATGG+TGG 0.607750 tig0024468:+50362 Msa1417320:CDS
TATGAACCGGGTCAAAGTAG+TGG 0.610831 tig0024468:+50186 Msa1417320:CDS
TGAATCATCAAGGCCAAGGT+GGG 0.616379 tig0024468:+50352 Msa1417320:CDS
TGGTACGACGGATATGAACC+GGG 0.618568 tig0024468:+50174 Msa1417320:CDS
TGAACTGTGCCATTGGCGCA+TGG 0.621869 tig0024468:+50647 Msa1417320:three_prime_UTR
TGAAGGGAAGGATTTGGTGA+CGG 0.623254 tig0024468:+49897 Msa1417320:CDS
GCTGAAGCGGAATGTGGATG+TGG 0.624843 tig0024468:+49969 Msa1417320:CDS
TCATCACTAAACATTTGTGG+AGG 0.625101 tig0024468:-50438 None:intergenic
CCAGTTTCAAAACGACAGAA+GGG 0.625562 tig0024468:-48822 None:intergenic
ATGTGAACCAACACCAACAA+GGG 0.630482 tig0024468:+50313 Msa1417320:CDS
ATGAGTCACAATCAGTGAGG+TGG 0.633960 tig0024468:-48470 None:intergenic
TATGTGAACCAACACCAACA+AGG 0.636197 tig0024468:+50312 Msa1417320:CDS
TACGCCAAATAACAAACTAA+CGG 0.636587 tig0024468:+49006 Msa1417320:CDS
GAACCGGGTCAAAGTAGTGG+TGG 0.645218 tig0024468:+50189 Msa1417320:CDS
AATCAGTGACAAGTGATGAA+GGG 0.649426 tig0024468:+49881 Msa1417320:CDS
TCAAAAGAAGATCAAAGTGG+TGG 0.650941 tig0024468:+50048 Msa1417320:CDS
GAAGAAGAATCACGACGATG+AGG 0.653269 tig0024468:+49156 Msa1417320:CDS
CTGAGGTTTATCTGCCGCGG+GGG 0.658473 tig0024468:-49131 None:intergenic
GTGAATCATCAAGGCCAAGG+TGG 0.663621 tig0024468:+50351 Msa1417320:CDS
AGAATAAAGAGAAAGATGAG+GGG 0.672988 tig0024468:+50016 Msa1417320:CDS
ACTTGATGATTCGAATACCC+CGG 0.673697 tig0024468:-50246 None:intergenic
ACGCGATGCAAGTTCAGCCG+GGG 0.674013 tig0024468:+50229 Msa1417320:CDS
CCTGAGGTTTATCTGCCGCG+GGG 0.679770 tig0024468:-49132 None:intergenic
TGGAAAGGTAGATCCTCACA+AGG 0.688035 tig0024468:+49033 Msa1417320:CDS
CAAGGTTCGTGATAAACTGG+CGG 0.691001 tig0024468:+49051 Msa1417320:CDS
AAATCAAAAGAAGATCAAAG+TGG 0.692885 tig0024468:+50045 Msa1417320:CDS
AGAGTCAAAGAGAGTGACTG+TGG 0.703780 tig0024468:-48493 None:intergenic
TGTCAAGAAGATCAAACGCG+CGG 0.732476 tig0024468:+48864 Msa1417320:CDS
TGGATGAGTCACAATCAGTG+AGG 0.810738 tig0024468:-48473 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAAATCAATTAAAA+CGG - tig0024468:49419-49438 None:intergenic 10.0%
!! ATTATACATGAATAAATAAT+TGG + tig0024468:49677-49696 Msa1417320:intron 10.0%
!!! TGAATTTTATAATATTACAT+CGG - tig0024468:50773-50792 None:intergenic 10.0%
!! AAAACAAAAATCAATTAAAA+CGG - tig0024468:49419-49438 None:intergenic 10.0%
!! ATTATACATGAATAAATAAT+TGG + tig0024468:49677-49696 Msa1417320:intron 10.0%
!!! TGAATTTTATAATATTACAT+CGG - tig0024468:50773-50792 None:intergenic 10.0%
!!! AAATAATTCGATTTTCTTAT+TGG - tig0024468:48447-48466 None:intergenic 15.0%
!!! TATAATTTTATATACACAAG+TGG - tig0024468:49663-49682 None:intergenic 15.0%
!!! AAGTTAATATTTTTCTCATT+CGG + tig0024468:49752-49771 Msa1417320:intron 15.0%
!!! GTATTAGTTTAATTTAGTTT+TGG + tig0024468:50580-50599 Msa1417320:three_prime_UTR 15.0%
!!! AAATAATTCGATTTTCTTAT+TGG - tig0024468:48447-48466 None:intergenic 15.0%
!!! TATAATTTTATATACACAAG+TGG - tig0024468:49663-49682 None:intergenic 15.0%
!!! AAGTTAATATTTTTCTCATT+CGG + tig0024468:49752-49771 Msa1417320:intron 15.0%
!!! GTATTAGTTTAATTTAGTTT+TGG + tig0024468:50580-50599 Msa1417320:three_prime_UTR 15.0%
!!! GAATAAAAGTTGTTTGATTT+TGG - tig0024468:48585-48604 None:intergenic 20.0%
!!! ACATTAATCCAATTTGTTAA+AGG - tig0024468:48669-48688 None:intergenic 20.0%
!!! ATTGATTTTTGTTTTACAGT+CGG + tig0024468:49424-49443 Msa1417320:intron 20.0%
!! AAGATTAAATTACATTGTGA+TGG + tig0024468:49467-49486 Msa1417320:CDS 20.0%
!!! TACTAGTTTACTGAAAATAA+AGG - tig0024468:49558-49577 None:intergenic 20.0%
!! TAATTACTTGGTTAAAATTG+TGG + tig0024468:49846-49865 Msa1417320:intron 20.0%
!! TAAGGTAGAAGTTAATAAAA+TGG + tig0024468:50110-50129 Msa1417320:CDS 20.0%
!!! TTAATAAAATGGAGTATCAT+GGG + tig0024468:50121-50140 Msa1417320:CDS 20.0%
!! TATAATTATGTGAATCAAGA+AGG + tig0024468:50276-50295 Msa1417320:CDS 20.0%
!! ATAATTATGTGAATCAAGAA+GGG + tig0024468:50277-50296 Msa1417320:CDS 20.0%
!! TATAATTATGTGAATCATCA+AGG + tig0024468:50342-50361 Msa1417320:CDS 20.0%
!!! TAGAGACATATTTTTGTTTT+TGG + tig0024468:50516-50535 Msa1417320:three_prime_UTR 20.0%
!!! GAATAAAAGTTGTTTGATTT+TGG - tig0024468:48585-48604 None:intergenic 20.0%
!!! ACATTAATCCAATTTGTTAA+AGG - tig0024468:48669-48688 None:intergenic 20.0%
!!! ATTGATTTTTGTTTTACAGT+CGG + tig0024468:49424-49443 Msa1417320:intron 20.0%
!! AAGATTAAATTACATTGTGA+TGG + tig0024468:49467-49486 Msa1417320:CDS 20.0%
!!! TACTAGTTTACTGAAAATAA+AGG - tig0024468:49558-49577 None:intergenic 20.0%
!! TAATTACTTGGTTAAAATTG+TGG + tig0024468:49846-49865 Msa1417320:intron 20.0%
!! TAAGGTAGAAGTTAATAAAA+TGG + tig0024468:50110-50129 Msa1417320:CDS 20.0%
!!! TTAATAAAATGGAGTATCAT+GGG + tig0024468:50121-50140 Msa1417320:CDS 20.0%
!! TATAATTATGTGAATCAAGA+AGG + tig0024468:50276-50295 Msa1417320:CDS 20.0%
!! ATAATTATGTGAATCAAGAA+GGG + tig0024468:50277-50296 Msa1417320:CDS 20.0%
!! TATAATTATGTGAATCATCA+AGG + tig0024468:50342-50361 Msa1417320:CDS 20.0%
!!! TAGAGACATATTTTTGTTTT+TGG + tig0024468:50516-50535 Msa1417320:three_prime_UTR 20.0%
!! ATTTTCATTTCTTGTGTTTG+TGG - tig0024468:48421-48440 None:intergenic 25.0%
! GTAAATTAAGTATGAAGCAA+CGG - tig0024468:48540-48559 None:intergenic 25.0%
! ATATACATACACCAACAAAT+GGG + tig0024468:48605-48624 Msa1417320:exon 25.0%
!!! ATCCAATTTGTTAAAGGATA+AGG - tig0024468:48663-48682 None:intergenic 25.0%
! AATTAAAAAATCGATGATGC+AGG + tig0024468:48962-48981 Msa1417320:intron 25.0%
!!! ATAACCGTTAGTTTGTTATT+TGG - tig0024468:49013-49032 None:intergenic 25.0%
! AATAACAAACTAACGGTTAT+TGG + tig0024468:49013-49032 Msa1417320:CDS 25.0%
! AATGAAATTTCTAACCTGTT+TGG - tig0024468:49260-49279 None:intergenic 25.0%
!! TCTCTTTTACTTAATCAACA+CGG - tig0024468:49367-49386 None:intergenic 25.0%
! AAGATTATCCTCAAAATCAA+AGG + tig0024468:49509-49528 Msa1417320:CDS 25.0%
! TAAGAATAAAGAGAAAGATG+AGG + tig0024468:50014-50033 Msa1417320:CDS 25.0%
! AAGAATAAAGAGAAAGATGA+GGG + tig0024468:50015-50034 Msa1417320:CDS 25.0%
! AAATCAAAAGAAGATCAAAG+TGG + tig0024468:50045-50064 Msa1417320:CDS 25.0%
!! GTTAATAAAATGGAGTATCA+TGG + tig0024468:50120-50139 Msa1417320:CDS 25.0%
! AATTATAATCATACCCTTGT+TGG - tig0024468:50329-50348 None:intergenic 25.0%
!! TTTTCATCACTAAACATTTG+TGG - tig0024468:50444-50463 None:intergenic 25.0%
!! ATTTTCATTTCTTGTGTTTG+TGG - tig0024468:48421-48440 None:intergenic 25.0%
! GTAAATTAAGTATGAAGCAA+CGG - tig0024468:48540-48559 None:intergenic 25.0%
! ATATACATACACCAACAAAT+GGG + tig0024468:48605-48624 Msa1417320:exon 25.0%
!!! ATCCAATTTGTTAAAGGATA+AGG - tig0024468:48663-48682 None:intergenic 25.0%
! AATTAAAAAATCGATGATGC+AGG + tig0024468:48962-48981 Msa1417320:intron 25.0%
!!! ATAACCGTTAGTTTGTTATT+TGG - tig0024468:49013-49032 None:intergenic 25.0%
! AATAACAAACTAACGGTTAT+TGG + tig0024468:49013-49032 Msa1417320:CDS 25.0%
! AATGAAATTTCTAACCTGTT+TGG - tig0024468:49260-49279 None:intergenic 25.0%
!! TCTCTTTTACTTAATCAACA+CGG - tig0024468:49367-49386 None:intergenic 25.0%
! AAGATTATCCTCAAAATCAA+AGG + tig0024468:49509-49528 Msa1417320:CDS 25.0%
! TAAGAATAAAGAGAAAGATG+AGG + tig0024468:50014-50033 Msa1417320:CDS 25.0%
! AAGAATAAAGAGAAAGATGA+GGG + tig0024468:50015-50034 Msa1417320:CDS 25.0%
! AAATCAAAAGAAGATCAAAG+TGG + tig0024468:50045-50064 Msa1417320:CDS 25.0%
!! GTTAATAAAATGGAGTATCA+TGG + tig0024468:50120-50139 Msa1417320:CDS 25.0%
! AATTATAATCATACCCTTGT+TGG - tig0024468:50329-50348 None:intergenic 25.0%
!! TTTTCATCACTAAACATTTG+TGG - tig0024468:50444-50463 None:intergenic 25.0%
AACGGAAACAACGTATATAT+AGG - tig0024468:48522-48541 None:intergenic 30.0%
CATATACATACACCAACAAA+TGG + tig0024468:48604-48623 Msa1417320:exon 30.0%
CTCCTTATCCTTTAACAAAT+TGG + tig0024468:48658-48677 Msa1417320:intron 30.0%
ACTACGATATTCACAATTTC+AGG + tig0024468:48920-48939 Msa1417320:intron 30.0%
CTACGATATTCACAATTTCA+GGG + tig0024468:48921-48940 Msa1417320:intron 30.0%
TACGCCAAATAACAAACTAA+CGG + tig0024468:49006-49025 Msa1417320:CDS 30.0%
CAACTAATAAAGAATACTGC+CGG - tig0024468:49730-49749 None:intergenic 30.0%
TCCATGTGGTATTAATTACT+TGG + tig0024468:49834-49853 Msa1417320:intron 30.0%
ACCAAGTAATTAATACCACA+TGG - tig0024468:49838-49857 None:intergenic 30.0%
TTGGTTAAAATTGTGGTTGT+AGG + tig0024468:49853-49872 Msa1417320:intron 30.0%
AAAAGGAACAATAGATGCAA+AGG + tig0024468:49921-49940 Msa1417320:CDS 30.0%
GGAAATTGTACCATATCTAA+CGG + tig0024468:49942-49961 Msa1417320:CDS 30.0%
AGAATAAAGAGAAAGATGAG+GGG + tig0024468:50016-50035 Msa1417320:CDS 30.0%
TTTGGATGCAAGTAAAATTG+AGG - tig0024468:50411-50430 None:intergenic 30.0%
! TCTATCTATGTTTTCCTCAA+TGG - tig0024468:50500-50519 None:intergenic 30.0%
TTTGGGGAAAAAGACAAATA+TGG + tig0024468:50705-50724 Msa1417320:three_prime_UTR 30.0%
AACGGAAACAACGTATATAT+AGG - tig0024468:48522-48541 None:intergenic 30.0%
CATATACATACACCAACAAA+TGG + tig0024468:48604-48623 Msa1417320:exon 30.0%
CTCCTTATCCTTTAACAAAT+TGG + tig0024468:48658-48677 Msa1417320:intron 30.0%
ACTACGATATTCACAATTTC+AGG + tig0024468:48920-48939 Msa1417320:intron 30.0%
CTACGATATTCACAATTTCA+GGG + tig0024468:48921-48940 Msa1417320:intron 30.0%
TACGCCAAATAACAAACTAA+CGG + tig0024468:49006-49025 Msa1417320:CDS 30.0%
CAACTAATAAAGAATACTGC+CGG - tig0024468:49730-49749 None:intergenic 30.0%
TCCATGTGGTATTAATTACT+TGG + tig0024468:49834-49853 Msa1417320:intron 30.0%
ACCAAGTAATTAATACCACA+TGG - tig0024468:49838-49857 None:intergenic 30.0%
TTGGTTAAAATTGTGGTTGT+AGG + tig0024468:49853-49872 Msa1417320:intron 30.0%
AAAAGGAACAATAGATGCAA+AGG + tig0024468:49921-49940 Msa1417320:CDS 30.0%
GGAAATTGTACCATATCTAA+CGG + tig0024468:49942-49961 Msa1417320:CDS 30.0%
AGAATAAAGAGAAAGATGAG+GGG + tig0024468:50016-50035 Msa1417320:CDS 30.0%
TTTGGATGCAAGTAAAATTG+AGG - tig0024468:50411-50430 None:intergenic 30.0%
! TCTATCTATGTTTTCCTCAA+TGG - tig0024468:50500-50519 None:intergenic 30.0%
TTTGGGGAAAAAGACAAATA+TGG + tig0024468:50705-50724 Msa1417320:three_prime_UTR 30.0%
TCATTTCTTGTGTTTGTGGA+TGG - tig0024468:48417-48436 None:intergenic 35.0%
TAGAAATTGTACCGTCGAAA+TGG - tig0024468:48894-48913 None:intergenic 35.0%
CAAACTAACGGTTATTGGAA+AGG + tig0024468:49018-49037 Msa1417320:CDS 35.0%
!!! TCAGATTTTTTGTCTTCGTC+CGG - tig0024468:49196-49215 None:intergenic 35.0%
! TGTTTGGAGGATTTTTCTTC+GGG - tig0024468:49244-49263 None:intergenic 35.0%
! CTGTTTGGAGGATTTTTCTT+CGG - tig0024468:49245-49264 None:intergenic 35.0%
GAAATTTCTAACCTGTTTGG+AGG - tig0024468:49257-49276 None:intergenic 35.0%
! TTTACAGTCGGTTCAAAACA+CGG + tig0024468:49436-49455 Msa1417320:intron 35.0%
!! TTGGCTAACCTTTGATTTTG+AGG - tig0024468:49520-49539 None:intergenic 35.0%
! TTAGCCAATAGCTAGCATTT+TGG + tig0024468:49532-49551 Msa1417320:intron 35.0%
AATCAGTGACAAGTGATGAA+GGG + tig0024468:49881-49900 Msa1417320:CDS 35.0%
TTCTTACCATCCTCTTTCTT+TGG - tig0024468:50000-50019 None:intergenic 35.0%
TCAAAAGAAGATCAAAGTGG+TGG + tig0024468:50048-50067 Msa1417320:CDS 35.0%
! AAAATGGAGTATCATGGGTA+CGG + tig0024468:50126-50145 Msa1417320:CDS 35.0%
GGTTGCTGATATTGATATTG+AGG - tig0024468:50390-50409 None:intergenic 35.0%
TCATCACTAAACATTTGTGG+AGG - tig0024468:50441-50460 None:intergenic 35.0%
ATGGTAAAATGCTCACATCA+TGG - tig0024468:50481-50500 None:intergenic 35.0%
! ATGTGAGCATTTTACCATTG+AGG + tig0024468:50483-50502 Msa1417320:exon 35.0%
ATATAGTTGAACTGTGCCAT+TGG + tig0024468:50640-50659 Msa1417320:three_prime_UTR 35.0%
! CTAGATGAGAATCCAGTTTT+GGG + tig0024468:50688-50707 Msa1417320:three_prime_UTR 35.0%
! TAGATGAGAATCCAGTTTTG+GGG + tig0024468:50689-50708 Msa1417320:three_prime_UTR 35.0%
! TTTGTCTTTTTCCCCAAAAC+TGG - tig0024468:50703-50722 None:intergenic 35.0%
TCATTTCTTGTGTTTGTGGA+TGG - tig0024468:48417-48436 None:intergenic 35.0%
TAGAAATTGTACCGTCGAAA+TGG - tig0024468:48894-48913 None:intergenic 35.0%
CAAACTAACGGTTATTGGAA+AGG + tig0024468:49018-49037 Msa1417320:CDS 35.0%
!!! TCAGATTTTTTGTCTTCGTC+CGG - tig0024468:49196-49215 None:intergenic 35.0%
! TGTTTGGAGGATTTTTCTTC+GGG - tig0024468:49244-49263 None:intergenic 35.0%
! CTGTTTGGAGGATTTTTCTT+CGG - tig0024468:49245-49264 None:intergenic 35.0%
GAAATTTCTAACCTGTTTGG+AGG - tig0024468:49257-49276 None:intergenic 35.0%
! TTTACAGTCGGTTCAAAACA+CGG + tig0024468:49436-49455 Msa1417320:intron 35.0%
!! TTGGCTAACCTTTGATTTTG+AGG - tig0024468:49520-49539 None:intergenic 35.0%
! TTAGCCAATAGCTAGCATTT+TGG + tig0024468:49532-49551 Msa1417320:intron 35.0%
AATCAGTGACAAGTGATGAA+GGG + tig0024468:49881-49900 Msa1417320:CDS 35.0%
TTCTTACCATCCTCTTTCTT+TGG - tig0024468:50000-50019 None:intergenic 35.0%
TCAAAAGAAGATCAAAGTGG+TGG + tig0024468:50048-50067 Msa1417320:CDS 35.0%
! AAAATGGAGTATCATGGGTA+CGG + tig0024468:50126-50145 Msa1417320:CDS 35.0%
GGTTGCTGATATTGATATTG+AGG - tig0024468:50390-50409 None:intergenic 35.0%
TCATCACTAAACATTTGTGG+AGG - tig0024468:50441-50460 None:intergenic 35.0%
ATGGTAAAATGCTCACATCA+TGG - tig0024468:50481-50500 None:intergenic 35.0%
! ATGTGAGCATTTTACCATTG+AGG + tig0024468:50483-50502 Msa1417320:exon 35.0%
ATATAGTTGAACTGTGCCAT+TGG + tig0024468:50640-50659 Msa1417320:three_prime_UTR 35.0%
! CTAGATGAGAATCCAGTTTT+GGG + tig0024468:50688-50707 Msa1417320:three_prime_UTR 35.0%
! TAGATGAGAATCCAGTTTTG+GGG + tig0024468:50689-50708 Msa1417320:three_prime_UTR 35.0%
! TTTGTCTTTTTCCCCAAAAC+TGG - tig0024468:50703-50722 None:intergenic 35.0%
AACTAACCTGACCCATTTGT+TGG - tig0024468:48619-48638 None:intergenic 40.0%
CCAGTTTCAAAACGACAGAA+GGG - tig0024468:48825-48844 None:intergenic 40.0%
TCCAGTTTCAAAACGACAGA+AGG - tig0024468:48826-48845 None:intergenic 40.0%
AAACTGGACTTACATTGCGA+AGG + tig0024468:48838-48857 Msa1417320:CDS 40.0%
AAAAATCGATGATGCAGGTG+TGG + tig0024468:48967-48986 Msa1417320:intron 40.0%
AGTTTATCACGAACCTTGTG+AGG - tig0024468:49049-49068 None:intergenic 40.0%
TCACAAGGTTCGTGATAAAC+TGG + tig0024468:49048-49067 Msa1417320:CDS 40.0%
GGCGGAGAAAATTAAGAAGA+AGG + tig0024468:49069-49088 Msa1417320:CDS 40.0%
TGAGGAGAAGAAGAAGAAAC+CGG + tig0024468:49174-49193 Msa1417320:CDS 40.0%
GGACGAAGACAAAAAATCTG+AGG + tig0024468:49195-49214 Msa1417320:CDS 40.0%
ATCTGAGGAGAAAAAAACCG+AGG + tig0024468:49210-49229 Msa1417320:CDS 40.0%
CGAAGAAAAATCCTCCAAAC+AGG + tig0024468:49243-49262 Msa1417320:CDS 40.0%
TTTCTTCGATACCGTTAGCA+GGG + tig0024468:49282-49301 Msa1417320:intron 40.0%
AAGGCCAAAATGCTAGCTAT+TGG - tig0024468:49539-49558 None:intergenic 40.0%
TCGTTTGAGCTAAGGGATAA+AGG - tig0024468:49805-49824 None:intergenic 40.0%
GAATCAGTGACAAGTGATGA+AGG + tig0024468:49880-49899 Msa1417320:CDS 40.0%
AAGTGATGAAGGGAAGGATT+TGG + tig0024468:49891-49910 Msa1417320:CDS 40.0%
!! AAGGATTTGGTGACGGTAAA+AGG + tig0024468:49904-49923 Msa1417320:CDS 40.0%
TTCAGCTTCTCCGTTAGATA+TGG - tig0024468:49955-49974 None:intergenic 40.0%
TGTGGTTCAACCAAAGAAAG+AGG + tig0024468:49987-50006 Msa1417320:CDS 40.0%
GTTCAACCAAAGAAAGAGGA+TGG + tig0024468:49991-50010 Msa1417320:CDS 40.0%
GAAAGAGGGAGAAAAAGCAA+AGG + tig0024468:50077-50096 Msa1417320:CDS 40.0%
! AAATGGAGTATCATGGGTAC+GGG + tig0024468:50127-50146 Msa1417320:CDS 40.0%
CACATCAAACTCCTATGTAC+TGG + tig0024468:50154-50173 Msa1417320:CDS 40.0%
! ACTTGATGATTCGAATACCC+CGG - tig0024468:50249-50268 None:intergenic 40.0%
TATGTGAACCAACACCAACA+AGG + tig0024468:50312-50331 Msa1417320:CDS 40.0%
ATGTGAACCAACACCAACAA+GGG + tig0024468:50313-50332 Msa1417320:CDS 40.0%
AATCATACCCTTGTTGGTGT+TGG - tig0024468:50323-50342 None:intergenic 40.0%
TATGTGAATCATCAAGGCCA+AGG + tig0024468:50348-50367 Msa1417320:CDS 40.0%
! ATTTGTGGAGGAGGTTGATT+TGG - tig0024468:50429-50448 None:intergenic 40.0%
TCACTAAACATTTGTGGAGG+AGG - tig0024468:50438-50457 None:intergenic 40.0%
CACATCATGGAACAAGCATT+CGG - tig0024468:50468-50487 None:intergenic 40.0%
AAACTGGATTCTCATCTAGC+AGG - tig0024468:50687-50706 None:intergenic 40.0%
! GCTAGATGAGAATCCAGTTT+TGG + tig0024468:50687-50706 Msa1417320:three_prime_UTR 40.0%
AACTAACCTGACCCATTTGT+TGG - tig0024468:48619-48638 None:intergenic 40.0%
CCAGTTTCAAAACGACAGAA+GGG - tig0024468:48825-48844 None:intergenic 40.0%
TCCAGTTTCAAAACGACAGA+AGG - tig0024468:48826-48845 None:intergenic 40.0%
AAACTGGACTTACATTGCGA+AGG + tig0024468:48838-48857 Msa1417320:CDS 40.0%
AAAAATCGATGATGCAGGTG+TGG + tig0024468:48967-48986 Msa1417320:intron 40.0%
AGTTTATCACGAACCTTGTG+AGG - tig0024468:49049-49068 None:intergenic 40.0%
TCACAAGGTTCGTGATAAAC+TGG + tig0024468:49048-49067 Msa1417320:CDS 40.0%
GGCGGAGAAAATTAAGAAGA+AGG + tig0024468:49069-49088 Msa1417320:CDS 40.0%
TGAGGAGAAGAAGAAGAAAC+CGG + tig0024468:49174-49193 Msa1417320:CDS 40.0%
GGACGAAGACAAAAAATCTG+AGG + tig0024468:49195-49214 Msa1417320:CDS 40.0%
ATCTGAGGAGAAAAAAACCG+AGG + tig0024468:49210-49229 Msa1417320:CDS 40.0%
CGAAGAAAAATCCTCCAAAC+AGG + tig0024468:49243-49262 Msa1417320:CDS 40.0%
TTTCTTCGATACCGTTAGCA+GGG + tig0024468:49282-49301 Msa1417320:intron 40.0%
AAGGCCAAAATGCTAGCTAT+TGG - tig0024468:49539-49558 None:intergenic 40.0%
TCGTTTGAGCTAAGGGATAA+AGG - tig0024468:49805-49824 None:intergenic 40.0%
GAATCAGTGACAAGTGATGA+AGG + tig0024468:49880-49899 Msa1417320:CDS 40.0%
AAGTGATGAAGGGAAGGATT+TGG + tig0024468:49891-49910 Msa1417320:CDS 40.0%
!! AAGGATTTGGTGACGGTAAA+AGG + tig0024468:49904-49923 Msa1417320:CDS 40.0%
TTCAGCTTCTCCGTTAGATA+TGG - tig0024468:49955-49974 None:intergenic 40.0%
TGTGGTTCAACCAAAGAAAG+AGG + tig0024468:49987-50006 Msa1417320:CDS 40.0%
GTTCAACCAAAGAAAGAGGA+TGG + tig0024468:49991-50010 Msa1417320:CDS 40.0%
GAAAGAGGGAGAAAAAGCAA+AGG + tig0024468:50077-50096 Msa1417320:CDS 40.0%
! AAATGGAGTATCATGGGTAC+GGG + tig0024468:50127-50146 Msa1417320:CDS 40.0%
CACATCAAACTCCTATGTAC+TGG + tig0024468:50154-50173 Msa1417320:CDS 40.0%
! ACTTGATGATTCGAATACCC+CGG - tig0024468:50249-50268 None:intergenic 40.0%
TATGTGAACCAACACCAACA+AGG + tig0024468:50312-50331 Msa1417320:CDS 40.0%
ATGTGAACCAACACCAACAA+GGG + tig0024468:50313-50332 Msa1417320:CDS 40.0%
AATCATACCCTTGTTGGTGT+TGG - tig0024468:50323-50342 None:intergenic 40.0%
TATGTGAATCATCAAGGCCA+AGG + tig0024468:50348-50367 Msa1417320:CDS 40.0%
! ATTTGTGGAGGAGGTTGATT+TGG - tig0024468:50429-50448 None:intergenic 40.0%
TCACTAAACATTTGTGGAGG+AGG - tig0024468:50438-50457 None:intergenic 40.0%
CACATCATGGAACAAGCATT+CGG - tig0024468:50468-50487 None:intergenic 40.0%
AAACTGGATTCTCATCTAGC+AGG - tig0024468:50687-50706 None:intergenic 40.0%
! GCTAGATGAGAATCCAGTTT+TGG + tig0024468:50687-50706 Msa1417320:three_prime_UTR 40.0%
ATGAGTCACAATCAGTGAGG+TGG - tig0024468:48473-48492 None:intergenic 45.0%
TGGATGAGTCACAATCAGTG+AGG - tig0024468:48476-48495 None:intergenic 45.0%
AGAGTCAAAGAGAGTGACTG+TGG - tig0024468:48496-48515 None:intergenic 45.0%
CATACACCAACAAATGGGTC+AGG + tig0024468:48610-48629 Msa1417320:exon 45.0%
!!! CCCTTCTGTCGTTTTGAAAC+TGG + tig0024468:48822-48841 Msa1417320:CDS 45.0%
TGTCAAGAAGATCAAACGCG+CGG + tig0024468:48864-48883 Msa1417320:CDS 45.0%
TGGAAAGGTAGATCCTCACA+AGG + tig0024468:49033-49052 Msa1417320:CDS 45.0%
CAAGGTTCGTGATAAACTGG+CGG + tig0024468:49051-49070 Msa1417320:CDS 45.0%
!!! GTCTTTTTTAGGCTGAGGGA+AGG - tig0024468:49107-49126 None:intergenic 45.0%
TCGTGATTCTTCTTCACCTG+AGG - tig0024468:49151-49170 None:intergenic 45.0%
GAAGAAGAATCACGACGATG+AGG + tig0024468:49156-49175 Msa1417320:CDS 45.0%
! TTCTTCGGGTTTCTTCTCCT+CGG - tig0024468:49230-49249 None:intergenic 45.0%
CTTTCTTCGATACCGTTAGC+AGG + tig0024468:49281-49300 Msa1417320:intron 45.0%
TTCGATTTCGTCCCTGCTAA+CGG - tig0024468:49296-49315 None:intergenic 45.0%
TTAGTGAGAACAAAGCGTGG+AGG - tig0024468:49396-49415 None:intergenic 45.0%
GAGTAGCTCGTTTGAGCTAA+GGG - tig0024468:49812-49831 None:intergenic 45.0%
TGAGTAGCTCGTTTGAGCTA+AGG - tig0024468:49813-49832 None:intergenic 45.0%
AACGAGCTACTCAATCCATG+TGG + tig0024468:49820-49839 Msa1417320:intron 45.0%
AGTGACAAGTGATGAAGGGA+AGG + tig0024468:49885-49904 Msa1417320:CDS 45.0%
!! TGAAGGGAAGGATTTGGTGA+CGG + tig0024468:49897-49916 Msa1417320:CDS 45.0%
ATCTAACGGAGAAGCTGAAG+CGG + tig0024468:49956-49975 Msa1417320:CDS 45.0%
! AAGTGGTGGTGAGAAGAAAG+AGG + tig0024468:50062-50081 Msa1417320:CDS 45.0%
! AGTGGTGGTGAGAAGAAAGA+GGG + tig0024468:50063-50082 Msa1417320:CDS 45.0%
GAGGGAGAAAAAGCAAAGGA+AGG + tig0024468:50081-50100 Msa1417320:CDS 45.0%
GGAGAAAAAGCAAAGGAAGG+CGG + tig0024468:50084-50103 Msa1417320:CDS 45.0%
! ACTCCTATGTACTGGTACGA+CGG + tig0024468:50162-50181 Msa1417320:CDS 45.0%
TATCCGTCGTACCAGTACAT+AGG - tig0024468:50168-50187 None:intergenic 45.0%
TATGAACCGGGTCAAAGTAG+TGG + tig0024468:50186-50205 Msa1417320:CDS 45.0%
TGAATCATCAAGGCCAAGGT+GGG + tig0024468:50352-50371 Msa1417320:CDS 45.0%
ATGAGTCACAATCAGTGAGG+TGG - tig0024468:48473-48492 None:intergenic 45.0%
TGGATGAGTCACAATCAGTG+AGG - tig0024468:48476-48495 None:intergenic 45.0%
AGAGTCAAAGAGAGTGACTG+TGG - tig0024468:48496-48515 None:intergenic 45.0%
CATACACCAACAAATGGGTC+AGG + tig0024468:48610-48629 Msa1417320:exon 45.0%
!!! CCCTTCTGTCGTTTTGAAAC+TGG + tig0024468:48822-48841 Msa1417320:CDS 45.0%
TGTCAAGAAGATCAAACGCG+CGG + tig0024468:48864-48883 Msa1417320:CDS 45.0%
TGGAAAGGTAGATCCTCACA+AGG + tig0024468:49033-49052 Msa1417320:CDS 45.0%
CAAGGTTCGTGATAAACTGG+CGG + tig0024468:49051-49070 Msa1417320:CDS 45.0%
!!! GTCTTTTTTAGGCTGAGGGA+AGG - tig0024468:49107-49126 None:intergenic 45.0%
TCGTGATTCTTCTTCACCTG+AGG - tig0024468:49151-49170 None:intergenic 45.0%
GAAGAAGAATCACGACGATG+AGG + tig0024468:49156-49175 Msa1417320:CDS 45.0%
! TTCTTCGGGTTTCTTCTCCT+CGG - tig0024468:49230-49249 None:intergenic 45.0%
CTTTCTTCGATACCGTTAGC+AGG + tig0024468:49281-49300 Msa1417320:intron 45.0%
TTCGATTTCGTCCCTGCTAA+CGG - tig0024468:49296-49315 None:intergenic 45.0%
TTAGTGAGAACAAAGCGTGG+AGG - tig0024468:49396-49415 None:intergenic 45.0%
GAGTAGCTCGTTTGAGCTAA+GGG - tig0024468:49812-49831 None:intergenic 45.0%
TGAGTAGCTCGTTTGAGCTA+AGG - tig0024468:49813-49832 None:intergenic 45.0%
AACGAGCTACTCAATCCATG+TGG + tig0024468:49820-49839 Msa1417320:intron 45.0%
AGTGACAAGTGATGAAGGGA+AGG + tig0024468:49885-49904 Msa1417320:CDS 45.0%
!! TGAAGGGAAGGATTTGGTGA+CGG + tig0024468:49897-49916 Msa1417320:CDS 45.0%
ATCTAACGGAGAAGCTGAAG+CGG + tig0024468:49956-49975 Msa1417320:CDS 45.0%
! AAGTGGTGGTGAGAAGAAAG+AGG + tig0024468:50062-50081 Msa1417320:CDS 45.0%
! AGTGGTGGTGAGAAGAAAGA+GGG + tig0024468:50063-50082 Msa1417320:CDS 45.0%
GAGGGAGAAAAAGCAAAGGA+AGG + tig0024468:50081-50100 Msa1417320:CDS 45.0%
GGAGAAAAAGCAAAGGAAGG+CGG + tig0024468:50084-50103 Msa1417320:CDS 45.0%
! ACTCCTATGTACTGGTACGA+CGG + tig0024468:50162-50181 Msa1417320:CDS 45.0%
TATCCGTCGTACCAGTACAT+AGG - tig0024468:50168-50187 None:intergenic 45.0%
TATGAACCGGGTCAAAGTAG+TGG + tig0024468:50186-50205 Msa1417320:CDS 45.0%
TGAATCATCAAGGCCAAGGT+GGG + tig0024468:50352-50371 Msa1417320:CDS 45.0%
!!! TAATTATTATTTTTTTAATC+CGG + tig0024468:49708-49727 Msa1417320:intron 5.0%
!!! GTTTTTTTATATAATAAATT+AGG + tig0024468:50607-50626 Msa1417320:three_prime_UTR 5.0%
!!! ATATATAAATAAATCATTTT+TGG + tig0024468:50793-50812 Msa1417320:three_prime_UTR 5.0%
!!! TAATTATTATTTTTTTAATC+CGG + tig0024468:49708-49727 Msa1417320:intron 5.0%
!!! GTTTTTTTATATAATAAATT+AGG + tig0024468:50607-50626 Msa1417320:three_prime_UTR 5.0%
!!! ATATATAAATAAATCATTTT+TGG + tig0024468:50793-50812 Msa1417320:three_prime_UTR 5.0%
!!! CGGCGTCTTTTTTAGGCTGA+GGG - tig0024468:49111-49130 None:intergenic 50.0%
CGGTTAGTGAGAACAAAGCG+TGG - tig0024468:49399-49418 None:intergenic 50.0%
AGCAAAGGAAGGCGGAACTA+AGG + tig0024468:50092-50111 Msa1417320:CDS 50.0%
CTGGTACGACGGATATGAAC+CGG + tig0024468:50173-50192 Msa1417320:CDS 50.0%
TGGTACGACGGATATGAACC+GGG + tig0024468:50174-50193 Msa1417320:CDS 50.0%
GTGAATCATCAAGGCCAAGG+TGG + tig0024468:50351-50370 Msa1417320:CDS 50.0%
!!! CGGCGTCTTTTTTAGGCTGA+GGG - tig0024468:49111-49130 None:intergenic 50.0%
CGGTTAGTGAGAACAAAGCG+TGG - tig0024468:49399-49418 None:intergenic 50.0%
AGCAAAGGAAGGCGGAACTA+AGG + tig0024468:50092-50111 Msa1417320:CDS 50.0%
CTGGTACGACGGATATGAAC+CGG + tig0024468:50173-50192 Msa1417320:CDS 50.0%
TGGTACGACGGATATGAACC+GGG + tig0024468:50174-50193 Msa1417320:CDS 50.0%
GTGAATCATCAAGGCCAAGG+TGG + tig0024468:50351-50370 Msa1417320:CDS 50.0%
!!! GCGGCGTCTTTTTTAGGCTG+AGG - tig0024468:49112-49131 None:intergenic 55.0%
ACCTGAGGTTTATCTGCCGC+GGG - tig0024468:49136-49155 None:intergenic 55.0%
CACCTGAGGTTTATCTGCCG+CGG - tig0024468:49137-49156 None:intergenic 55.0%
GGAGAAGCTGAAGCGGAATG+TGG + tig0024468:49963-49982 Msa1417320:CDS 55.0%
GCTGAAGCGGAATGTGGATG+TGG + tig0024468:49969-49988 Msa1417320:CDS 55.0%
GAACCGGGTCAAAGTAGTGG+TGG + tig0024468:50189-50208 Msa1417320:CDS 55.0%
CCACCACCACTACTTTGACC+CGG - tig0024468:50195-50214 None:intergenic 55.0%
!! GGTCAAAGTAGTGGTGGTGG+TGG + tig0024468:50195-50214 Msa1417320:CDS 55.0%
CTACGCGATGCAAGTTCAGC+CGG + tig0024468:50227-50246 Msa1417320:CDS 55.0%
TACGCGATGCAAGTTCAGCC+GGG + tig0024468:50228-50247 Msa1417320:CDS 55.0%
TCAAGGCCAAGGTGGGCATA+TGG + tig0024468:50359-50378 Msa1417320:CDS 55.0%
GTTCCACCATATGCCCACCT+TGG - tig0024468:50368-50387 None:intergenic 55.0%
! TGAACTGTGCCATTGGCGCA+TGG + tig0024468:50647-50666 Msa1417320:three_prime_UTR 55.0%
CGTCACTAACCATGCGCCAA+TGG - tig0024468:50659-50678 None:intergenic 55.0%
GGCGCATGGTTAGTGACGTA+CGG + tig0024468:50661-50680 Msa1417320:three_prime_UTR 55.0%
!!! GCGGCGTCTTTTTTAGGCTG+AGG - tig0024468:49112-49131 None:intergenic 55.0%
ACCTGAGGTTTATCTGCCGC+GGG - tig0024468:49136-49155 None:intergenic 55.0%
CACCTGAGGTTTATCTGCCG+CGG - tig0024468:49137-49156 None:intergenic 55.0%
GGAGAAGCTGAAGCGGAATG+TGG + tig0024468:49963-49982 Msa1417320:CDS 55.0%
GCTGAAGCGGAATGTGGATG+TGG + tig0024468:49969-49988 Msa1417320:CDS 55.0%
GAACCGGGTCAAAGTAGTGG+TGG + tig0024468:50189-50208 Msa1417320:CDS 55.0%
CCACCACCACTACTTTGACC+CGG - tig0024468:50195-50214 None:intergenic 55.0%
!! GGTCAAAGTAGTGGTGGTGG+TGG + tig0024468:50195-50214 Msa1417320:CDS 55.0%
CTACGCGATGCAAGTTCAGC+CGG + tig0024468:50227-50246 Msa1417320:CDS 55.0%
TACGCGATGCAAGTTCAGCC+GGG + tig0024468:50228-50247 Msa1417320:CDS 55.0%
TCAAGGCCAAGGTGGGCATA+TGG + tig0024468:50359-50378 Msa1417320:CDS 55.0%
GTTCCACCATATGCCCACCT+TGG - tig0024468:50368-50387 None:intergenic 55.0%
! TGAACTGTGCCATTGGCGCA+TGG + tig0024468:50647-50666 Msa1417320:three_prime_UTR 55.0%
CGTCACTAACCATGCGCCAA+TGG - tig0024468:50659-50678 None:intergenic 55.0%
GGCGCATGGTTAGTGACGTA+CGG + tig0024468:50661-50680 Msa1417320:three_prime_UTR 55.0%
TAAAAAAGACGCCGCCCCCG+CGG + tig0024468:49117-49136 Msa1417320:CDS 60.0%
CTGAGGTTTATCTGCCGCGG+GGG - tig0024468:49134-49153 None:intergenic 60.0%
CCTGAGGTTTATCTGCCGCG+GGG - tig0024468:49135-49154 None:intergenic 60.0%
CCGGGTCAAAGTAGTGGTGG+TGG + tig0024468:50192-50211 Msa1417320:CDS 60.0%
ACGCGATGCAAGTTCAGCCG+GGG + tig0024468:50229-50248 Msa1417320:CDS 60.0%
AGGCCAAGGTGGGCATATGG+TGG + tig0024468:50362-50381 Msa1417320:CDS 60.0%
TAAAAAAGACGCCGCCCCCG+CGG + tig0024468:49117-49136 Msa1417320:CDS 60.0%
CTGAGGTTTATCTGCCGCGG+GGG - tig0024468:49134-49153 None:intergenic 60.0%
CCTGAGGTTTATCTGCCGCG+GGG - tig0024468:49135-49154 None:intergenic 60.0%
CCGGGTCAAAGTAGTGGTGG+TGG + tig0024468:50192-50211 Msa1417320:CDS 60.0%
ACGCGATGCAAGTTCAGCCG+GGG + tig0024468:50229-50248 Msa1417320:CDS 60.0%
AGGCCAAGGTGGGCATATGG+TGG + tig0024468:50362-50381 Msa1417320:CDS 60.0%
CGCGCGGTTCGCCATTTCGA+CGG + tig0024468:48880-48899 Msa1417320:CDS 65.0%
!!! GCGGGGGCGGCGTCTTTTTT+AGG - tig0024468:49118-49137 None:intergenic 65.0%
AGGTTTATCTGCCGCGGGGG+CGG - tig0024468:49131-49150 None:intergenic 65.0%
CCCCGCGGCAGATAAACCTC+AGG + tig0024468:49132-49151 Msa1417320:CDS 65.0%
CGCGCGGTTCGCCATTTCGA+CGG + tig0024468:48880-48899 Msa1417320:CDS 65.0%
!!! GCGGGGGCGGCGTCTTTTTT+AGG - tig0024468:49118-49137 None:intergenic 65.0%
AGGTTTATCTGCCGCGGGGG+CGG - tig0024468:49131-49150 None:intergenic 65.0%
CCCCGCGGCAGATAAACCTC+AGG + tig0024468:49132-49151 Msa1417320:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0024468 gene 48407 50820 48407 ID=Msa1417320;Name=Msa1417320
tig0024468 mRNA 48407 50820 48407 ID=Msa1417320-mRNA-1;Parent=Msa1417320;Name=Msa1417320-mRNA-1;_AED=0.12;_eAED=0.12;_QI=216|0.75|0.8|1|1|1|5|332|366
tig0024468 exon 48407 48631 48407 ID=Msa1417320-mRNA-1:exon:23333;Parent=Msa1417320-mRNA-1
tig0024468 exon 48793 48901 48793 ID=Msa1417320-mRNA-1:exon:23334;Parent=Msa1417320-mRNA-1
tig0024468 exon 48984 49264 48984 ID=Msa1417320-mRNA-1:exon:23335;Parent=Msa1417320-mRNA-1
tig0024468 exon 49443 49530 49443 ID=Msa1417320-mRNA-1:exon:23336;Parent=Msa1417320-mRNA-1
tig0024468 exon 49875 50820 49875 ID=Msa1417320-mRNA-1:exon:23337;Parent=Msa1417320-mRNA-1
tig0024468 five_prime_UTR 48407 48622 48407 ID=Msa1417320-mRNA-1:five_prime_utr;Parent=Msa1417320-mRNA-1
tig0024468 CDS 48623 48631 48623 ID=Msa1417320-mRNA-1:cds;Parent=Msa1417320-mRNA-1
tig0024468 CDS 48793 48901 48793 ID=Msa1417320-mRNA-1:cds;Parent=Msa1417320-mRNA-1
tig0024468 CDS 48984 49264 48984 ID=Msa1417320-mRNA-1:cds;Parent=Msa1417320-mRNA-1
tig0024468 CDS 49443 49530 49443 ID=Msa1417320-mRNA-1:cds;Parent=Msa1417320-mRNA-1
tig0024468 CDS 49875 50488 49875 ID=Msa1417320-mRNA-1:cds;Parent=Msa1417320-mRNA-1
tig0024468 three_prime_UTR 50489 50820 50489 ID=Msa1417320-mRNA-1:three_prime_utr;Parent=Msa1417320-mRNA-1
Gene Sequence

>Msa1417320

ATGGGTCAGCAGAAAGATGAGATAAAAAACGACGATATCCCTTCTGTCGTTTTGAAACTGGACTTACATTGCGAAGGATGTGTCAAGAAGATCAAACGCGCGGTTCGCCATTTCGACGGTGTGGAAGTCGTTAAAGCAGATACGCCAAATAACAAACTAACGGTTATTGGAAAGGTAGATCCTCACAAGGTTCGTGATAAACTGGCGGAGAAAATTAAGAAGAAGGTTGAGCTTGTTTCCTTCCCTCAGCCTAAAAAAGACGCCGCCCCCGCGGCAGATAAACCTCAGGTGAAGAAGAATCACGACGATGAGGAGAAGAAGAAGAAACCGGACGAAGACAAAAAATCTGAGGAGAAAAAAACCGAGGAGAAGAAACCCGAAGAAAAATCCTCCAAACAGTCGGTTCAAAACACGGTCGTTTTGAAGATTAAATTACATTGTGATGGTTGTATTAAAAAAATTGAGAAGATTATCCTCAAAATCAAAGGAGTCGAATCAGTGACAAGTGATGAAGGGAAGGATTTGGTGACGGTAAAAGGAACAATAGATGCAAAGGAAATTGTACCATATCTAACGGAGAAGCTGAAGCGGAATGTGGATGTGGTTCAACCAAAGAAAGAGGATGGTAAGAATAAAGAGAAAGATGAGGGGAAACAAAAATCAAAAGAAGATCAAAGTGGTGGTGAGAAGAAAGAGGGAGAAAAAGCAAAGGAAGGCGGAACTAAGGTAGAAGTTAATAAAATGGAGTATCATGGGTACGGGCAAGCACATCAAACTCCTATGTACTGGTACGACGGATATGAACCGGGTCAAAGTAGTGGTGGTGGTGGTAGTAGTAACTACGCGATGCAAGTTCAGCCGGGGTATTCGAATCATCAAGTGCACAATTATAATTATGTGAATCAAGAAGGGTATAATTACAATTATGTGAACCAACACCAACAAGGGTATGATTATAATTATGTGAATCATCAAGGCCAAGGTGGGCATATGGTGGAACCTCAATATCAATATCAGCAACCTCAATTTTACTTGCATCCAAATCAACCTCCTCCACAAATGTTTAGTGATGAAAATCCGAATGCTTGTTCCATGATGTGA
Protein sequence

>Msa1417320

MGQQKDEIKNDDIPSVVLKLDLHCEGCVKKIKRAVRHFDGVEVVKADTPNNKLTVIGKVDPHKVRDKLAEKIKKKVELVSFPQPKKDAAPAADKPQVKKNHDDEEKKKKPDEDKKSEEKKTEEKKPEEKSSKQSVQNTVVLKIKLHCDGCIKKIEKIILKIKGVESVTSDEGKDLVTVKGTIDAKEIVPYLTEKLKRNVDVVQPKKEDGKNKEKDEGKQKSKEDQSGGEKKEGEKAKEGGTKVEVNKMEYHGYGQAHQTPMYWYDGYEPGQSSGGGGSSNYAMQVQPGYSNHQVHNYNYVNQEGYNYNYVNQHQQGYDYNYVNHQGQGGHMVEPQYQYQQPQFYLHPNQPPPQMFSDENPNACSMM*