Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082560 | XP_003625999.1 | 95.833 | 216 | 9 | 0 | 23 | 238 | 1 | 216 | 2.37e-148 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082560 | sp|Q93W77|NIFU1_ARATH | 67.157 | 204 | 53 | 4 | 45 | 238 | 32 | 231 | 3.53e-88 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082560 | G7KTN7 | 95.833 | 216 | 9 | 0 | 23 | 238 | 1 | 216 | 1.13e-148 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0457010 | Msa1082560 | 0.846712 | 1.827920e-59 | -8.615850e-47 |
| Msa1082560 | Msa1087530 | 0.801000 | 1.106782e-48 | -8.615850e-47 |
| Msa1082560 | Msa1227060 | 0.812043 | 5.169380e-51 | -8.615850e-47 |
| Msa0563140 | Msa1082560 | 0.804568 | 2.029171e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082560 | MtrunA17_Chr7g0270231 | 95.833 | 216 | 9 | 0 | 23 | 238 | 1 | 216 | 2.18e-152 | 422 |
| Msa1082560 | MtrunA17_Chr8g0352991 | 89.394 | 132 | 14 | 0 | 23 | 154 | 1 | 132 | 1.26e-83 | 246 |
| Msa1082560 | MtrunA17_Chr2g0277211 | 42.949 | 156 | 83 | 3 | 86 | 236 | 68 | 222 | 1.76e-29 | 110 |
| Msa1082560 | MtrunA17_Chr2g0298061 | 40.426 | 141 | 82 | 2 | 91 | 230 | 91 | 230 | 7.36e-24 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1082560 | AT4G01940.1 | 67.157 | 204 | 53 | 4 | 45 | 238 | 32 | 231 | 3.59e-89 | 263 |
| Msa1082560 | AT5G49940.1 | 35.897 | 195 | 109 | 5 | 47 | 236 | 51 | 234 | 8.91e-26 | 101 |
| Msa1082560 | AT4G25910.1 | 37.500 | 144 | 87 | 3 | 91 | 232 | 84 | 226 | 2.20e-21 | 89.4 |
| Msa1082560 | AT5G49940.2 | 49.462 | 93 | 42 | 2 | 91 | 183 | 85 | 172 | 4.32e-21 | 87.4 |
Find 54 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGCACAATATCTTTAA+TGG | 0.141568 | 7_2:-82661401 | None:intergenic |
| CTCAACCACAACTATGAAAA+TGG | 0.150095 | 7_2:+82661342 | Msa1082560:CDS |
| CGCGTTCTTAAGGAGAAATT+TGG | 0.252206 | 7_2:+82661373 | Msa1082560:CDS |
| AGCTGTGAGGTCGAATTTCT+TGG | 0.307760 | 7_2:-82661188 | None:intergenic |
| TTCGTTGGTATTGAACAAAT+TGG | 0.356289 | 7_2:-82661013 | None:intergenic |
| GTCGTTTCTCTTAAGCTTCA+AGG | 0.377522 | 7_2:+82661298 | Msa1082560:CDS |
| AAGGTAACATTGAGAATATC+TGG | 0.389748 | 7_2:-82662943 | None:intergenic |
| GGGAATTGAACGCGTTCTTA+AGG | 0.393140 | 7_2:+82661363 | Msa1082560:CDS |
| GTCGCCATTGATGGAGCTTC+CGG | 0.397069 | 7_2:-82660983 | None:intergenic |
| GGAGTTAGAGTCGCCATTGA+TGG | 0.397641 | 7_2:-82660992 | None:intergenic |
| TATAAGACCCATCATTTGAT+AGG | 0.398002 | 7_2:+82663050 | Msa1082560:three_prime_UTR |
| CTGGTTCTCGTTAGCGGTAG+AGG | 0.402092 | 7_2:-82661143 | None:intergenic |
| TGATGGAGCTTCCGGAGTTA+TGG | 0.424007 | 7_2:-82660975 | None:intergenic |
| ATTCAAGTCCTATCAAATGA+TGG | 0.448518 | 7_2:-82663058 | None:intergenic |
| TCGAGAACGAGATCGACGTT+TGG | 0.452304 | 7_2:-82661211 | None:intergenic |
| TAACGAGAACCAGTCTTCTC+CGG | 0.458318 | 7_2:+82661153 | Msa1082560:CDS |
| TCAACCACAACTATGAAAAT+GGG | 0.480712 | 7_2:+82661343 | Msa1082560:CDS |
| AGTATAATCCCGGAGAAGAC+TGG | 0.483617 | 7_2:-82661162 | None:intergenic |
| TTCTTGGCGGAGTATAATCC+CGG | 0.486892 | 7_2:-82661172 | None:intergenic |
| GGACCTGAGTCCATTGGATC+AGG | 0.493608 | 7_2:+82662892 | Msa1082560:CDS |
| AGAAGACTGGTTCTCGTTAG+CGG | 0.500401 | 7_2:-82661149 | None:intergenic |
| AGGTGTTAAAGCTGCGATCA+AGG | 0.501612 | 7_2:+82662912 | Msa1082560:CDS |
| GATGTTGTATCCGTTGAAAA+CGG | 0.506210 | 7_2:+82661274 | Msa1082560:CDS |
| TTCATAGTTGTGGTTGAGCT+AGG | 0.507201 | 7_2:-82661337 | None:intergenic |
| ATTCTCAAATTCAGTTTCGT+TGG | 0.513374 | 7_2:-82661028 | None:intergenic |
| TATGTTGGACCTGAGTCCAT+TGG | 0.522225 | 7_2:+82662886 | Msa1082560:CDS |
| AACTCCGGAAGCTCCATCAA+TGG | 0.535221 | 7_2:+82660979 | Msa1082560:CDS |
| AACGAGAACCAGTCTTCTCC+GGG | 0.536226 | 7_2:+82661154 | Msa1082560:CDS |
| GTGCAAGTGTTATCTGTTGA+AGG | 0.542531 | 7_2:+82662844 | Msa1082560:CDS |
| TATCTCAGTCTATCAATACT+TGG | 0.545113 | 7_2:+82663157 | Msa1082560:three_prime_UTR |
| TGTGAGGTCGAATTTCTTGG+CGG | 0.549215 | 7_2:-82661185 | None:intergenic |
| TTCAAGTCCTATCAAATGAT+GGG | 0.549868 | 7_2:-82663057 | None:intergenic |
| CAATGTTACCTTCTCTACCT+AGG | 0.557145 | 7_2:+82662954 | Msa1082560:CDS |
| TAAAATTGCAATGAAGAATG+AGG | 0.560047 | 7_2:-82662998 | None:intergenic |
| GACTGTGTTGTGGAATATGT+TGG | 0.562518 | 7_2:+82662871 | Msa1082560:CDS |
| AGCAAGGGAAACAACGGTTG+AGG | 0.563035 | 7_2:+82661438 | Msa1082560:CDS |
| CTCATTACGCACCATAACTC+CGG | 0.565461 | 7_2:+82660964 | Msa1082560:CDS |
| TCATCTAGAGATATTGAGAC+CGG | 0.570636 | 7_2:+82662798 | Msa1082560:CDS |
| TGAAGGTGGTGACTGTGTTG+TGG | 0.573198 | 7_2:+82662861 | Msa1082560:CDS |
| CCTCCGTCAGAGATGAGGTA+AGG | 0.579366 | 7_2:-82661244 | None:intergenic |
| CGTCCTTACCTCATCTCTGA+CGG | 0.582206 | 7_2:+82661241 | Msa1082560:CDS |
| AGCTTTAACACCTGATCCAA+TGG | 0.583998 | 7_2:-82662902 | None:intergenic |
| CGTTTCCTCCGTCAGAGATG+AGG | 0.588496 | 7_2:-82661249 | None:intergenic |
| AATTGCTACCTAGGTAGAGA+AGG | 0.592971 | 7_2:-82662962 | None:intergenic |
| ATTGCATTGAATTGCTACCT+AGG | 0.599744 | 7_2:-82662971 | None:intergenic |
| CGTTAGCGGTAGAGGATGAA+CGG | 0.600517 | 7_2:-82661135 | None:intergenic |
| TGTTTGATGATGATCAAGCA+AGG | 0.620834 | 7_2:+82661422 | Msa1082560:CDS |
| GTTTGATGATGATCAAGCAA+GGG | 0.625912 | 7_2:+82661423 | Msa1082560:CDS |
| CCTTACCTCATCTCTGACGG+AGG | 0.627657 | 7_2:+82661244 | Msa1082560:CDS |
| ACACCTGATCCAATGGACTC+AGG | 0.634250 | 7_2:-82662895 | None:intergenic |
| TGATCAAGCAAGGGAAACAA+CGG | 0.689446 | 7_2:+82661432 | Msa1082560:CDS |
| CAAGTGTTATCTGTTGAAGG+TGG | 0.718194 | 7_2:+82662847 | Msa1082560:CDS |
| AGAGGATGAACGGATTACTG+TGG | 0.730832 | 7_2:-82661125 | None:intergenic |
| GATCGACGTTTGGAGCTGTG+AGG | 0.745797 | 7_2:-82661201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAAAGCAAAAAGTAA+GGG | - | chr7_2:82661476-82661495 | None:intergenic | 15.0% |
| !! | AATAATAAAAGCAAAAAGTA+AGG | - | chr7_2:82661477-82661496 | None:intergenic | 15.0% |
| !! | ATGAGAAAATTAAAAGTAAA+GGG | - | chr7_2:82661904-82661923 | None:intergenic | 15.0% |
| !! | AATGAGAAAATTAAAAGTAA+AGG | - | chr7_2:82661905-82661924 | None:intergenic | 15.0% |
| !!! | AATGTTTTTATAAGCTATAT+TGG | + | chr7_2:82662226-82662245 | Msa1082560:intron | 15.0% |
| !! | AACAAAATAACATGAAAAAA+TGG | - | chr7_2:82663125-82663144 | None:intergenic | 15.0% |
| !! | ATAATAAAAGCAAAAAGTAA+GGG | - | chr7_2:82661476-82661495 | None:intergenic | 15.0% |
| !! | AATAATAAAAGCAAAAAGTA+AGG | - | chr7_2:82661477-82661496 | None:intergenic | 15.0% |
| !! | ATGAGAAAATTAAAAGTAAA+GGG | - | chr7_2:82661904-82661923 | None:intergenic | 15.0% |
| !! | AATGAGAAAATTAAAAGTAA+AGG | - | chr7_2:82661905-82661924 | None:intergenic | 15.0% |
| !!! | AATGTTTTTATAAGCTATAT+TGG | + | chr7_2:82662226-82662245 | Msa1082560:intron | 15.0% |
| !! | AACAAAATAACATGAAAAAA+TGG | - | chr7_2:82663125-82663144 | None:intergenic | 15.0% |
| !! | AAAAACGTCATTTACTTAAT+AGG | + | chr7_2:82660900-82660919 | Msa1082560:five_prime_UTR | 20.0% |
| !! | TAATAAAAGCAAAAAGTAAG+GGG | - | chr7_2:82661475-82661494 | None:intergenic | 20.0% |
| !! | ACTATCATTATTCTTAATAC+AGG | - | chr7_2:82661772-82661791 | None:intergenic | 20.0% |
| !! | GTTAATATTGATCAAACTTA+CGG | - | chr7_2:82661928-82661947 | None:intergenic | 20.0% |
| !! | CAATTATTATGATAAACACA+AGG | + | chr7_2:82662044-82662063 | Msa1082560:intron | 20.0% |
| !! | TAAAATGCTTATGAAAATTG+TGG | + | chr7_2:82662270-82662289 | Msa1082560:intron | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | + | chr7_2:82662437-82662456 | Msa1082560:intron | 20.0% |
| !! | TTTAACCAAAATCAATTTCA+CGG | + | chr7_2:82662621-82662640 | Msa1082560:intron | 20.0% |
| !! | TTAGAATCAATGTATGTTAT+TGG | - | chr7_2:82662685-82662704 | None:intergenic | 20.0% |
| !! | AAAAACGTCATTTACTTAAT+AGG | + | chr7_2:82660900-82660919 | Msa1082560:five_prime_UTR | 20.0% |
| !! | TAATAAAAGCAAAAAGTAAG+GGG | - | chr7_2:82661475-82661494 | None:intergenic | 20.0% |
| !! | ACTATCATTATTCTTAATAC+AGG | - | chr7_2:82661772-82661791 | None:intergenic | 20.0% |
| !! | GTTAATATTGATCAAACTTA+CGG | - | chr7_2:82661928-82661947 | None:intergenic | 20.0% |
| !! | CAATTATTATGATAAACACA+AGG | + | chr7_2:82662044-82662063 | Msa1082560:intron | 20.0% |
| !! | TAAAATGCTTATGAAAATTG+TGG | + | chr7_2:82662270-82662289 | Msa1082560:intron | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | + | chr7_2:82662437-82662456 | Msa1082560:intron | 20.0% |
| !! | TTTAACCAAAATCAATTTCA+CGG | + | chr7_2:82662621-82662640 | Msa1082560:intron | 20.0% |
| !! | TTAGAATCAATGTATGTTAT+TGG | - | chr7_2:82662685-82662704 | None:intergenic | 20.0% |
| !! | AAAAGCAATTTTCTAATTCG+CGG | + | chr7_2:82660939-82660958 | Msa1082560:CDS | 25.0% |
| !! | AAGTTCTTGAATTTTGCTTT+GGG | - | chr7_2:82661102-82661121 | None:intergenic | 25.0% |
| ! | ATGGTTGTTATGTTAATGAT+TGG | + | chr7_2:82661604-82661623 | Msa1082560:intron | 25.0% |
| !! | AATTAGATGTGATTAGTTGT+TGG | + | chr7_2:82661652-82661671 | Msa1082560:intron | 25.0% |
| !! | TTAGTCGTTAGTTTAATTGT+TGG | + | chr7_2:82661791-82661810 | Msa1082560:intron | 25.0% |
| !! | CTAGAGGTGTAAAATTAATT+TGG | + | chr7_2:82662392-82662411 | Msa1082560:intron | 25.0% |
| ! | TAAAATTGCAATGAAGAATG+AGG | - | chr7_2:82663001-82663020 | None:intergenic | 25.0% |
| !! | AAAAGCAATTTTCTAATTCG+CGG | + | chr7_2:82660939-82660958 | Msa1082560:CDS | 25.0% |
| !! | AAGTTCTTGAATTTTGCTTT+GGG | - | chr7_2:82661102-82661121 | None:intergenic | 25.0% |
| ! | ATGGTTGTTATGTTAATGAT+TGG | + | chr7_2:82661604-82661623 | Msa1082560:intron | 25.0% |
| !! | AATTAGATGTGATTAGTTGT+TGG | + | chr7_2:82661652-82661671 | Msa1082560:intron | 25.0% |
| !! | TTAGTCGTTAGTTTAATTGT+TGG | + | chr7_2:82661791-82661810 | Msa1082560:intron | 25.0% |
| !! | CTAGAGGTGTAAAATTAATT+TGG | + | chr7_2:82662392-82662411 | Msa1082560:intron | 25.0% |
| ! | TAAAATTGCAATGAAGAATG+AGG | - | chr7_2:82663001-82663020 | None:intergenic | 25.0% |
| ! | TTCGTTGGTATTGAACAAAT+TGG | - | chr7_2:82661016-82661035 | None:intergenic | 30.0% |
| ATTCTCAAATTCAGTTTCGT+TGG | - | chr7_2:82661031-82661050 | None:intergenic | 30.0% | |
| !!! | TGAGATTGTGTTGTTTTTGT+TGG | - | chr7_2:82661054-82661073 | None:intergenic | 30.0% |
| ! | GAAGTTCTTGAATTTTGCTT+TGG | - | chr7_2:82661103-82661122 | None:intergenic | 30.0% |
| TCAACCACAACTATGAAAAT+GGG | + | chr7_2:82661343-82661362 | Msa1082560:CDS | 30.0% | |
| ! | AATTCCCATTTTCATAGTTG+TGG | - | chr7_2:82661350-82661369 | None:intergenic | 30.0% |
| CACTTGCACAATATCTTTAA+TGG | - | chr7_2:82661404-82661423 | None:intergenic | 30.0% | |
| ATTAGTTACATCACGTATGA+AGG | + | chr7_2:82661678-82661697 | Msa1082560:intron | 30.0% | |
| TTAGTTACATCACGTATGAA+GGG | + | chr7_2:82661679-82661698 | Msa1082560:intron | 30.0% | |
| TATTCTTAATACAGGCTAGT+TGG | - | chr7_2:82661764-82661783 | None:intergenic | 30.0% | |
| AAATGGTGAAAAGCTCAAAA+GGG | - | chr7_2:82661960-82661979 | None:intergenic | 30.0% | |
| TAAATGGTGAAAAGCTCAAA+AGG | - | chr7_2:82661961-82661980 | None:intergenic | 30.0% | |
| TGCAAGTTATTTATCCAAAC+AGG | - | chr7_2:82662010-82662029 | None:intergenic | 30.0% | |
| TGAAACCAAACATACACTTA+GGG | - | chr7_2:82662348-82662367 | None:intergenic | 30.0% | |
| !! | ATGTTTGGTTTCACTTTTAG+AGG | + | chr7_2:82662355-82662374 | Msa1082560:intron | 30.0% |
| !! | TGTTTGGTTTCACTTTTAGA+GGG | + | chr7_2:82662356-82662375 | Msa1082560:intron | 30.0% |
| GCTTCAAGTAGAATCAAATA+TGG | - | chr7_2:82662491-82662510 | None:intergenic | 30.0% | |
| TTCTACTTGAAGCTAGAAAT+TGG | + | chr7_2:82662498-82662517 | Msa1082560:intron | 30.0% | |
| ! | TTTGGTTAAATGTGAGTTGA+AGG | - | chr7_2:82662611-82662630 | None:intergenic | 30.0% |
| !! | TGATACCGTGAAATTGATTT+TGG | - | chr7_2:82662629-82662648 | None:intergenic | 30.0% |
| ! | AATGAATGCTAGTTGATGTT+TGG | + | chr7_2:82662749-82662768 | Msa1082560:intron | 30.0% |
| ! | ATGAATGCTAGTTGATGTTT+GGG | + | chr7_2:82662750-82662769 | Msa1082560:intron | 30.0% |
| AGACCGGCAATTAAAAATTA+CGG | + | chr7_2:82662814-82662833 | Msa1082560:CDS | 30.0% | |
| AAGGTAACATTGAGAATATC+TGG | - | chr7_2:82662946-82662965 | None:intergenic | 30.0% | |
| TATAAGACCCATCATTTGAT+AGG | + | chr7_2:82663050-82663069 | Msa1082560:three_prime_UTR | 30.0% | |
| TTCAAGTCCTATCAAATGAT+GGG | - | chr7_2:82663060-82663079 | None:intergenic | 30.0% | |
| ATTCAAGTCCTATCAAATGA+TGG | - | chr7_2:82663061-82663080 | None:intergenic | 30.0% | |
| TATCTCAGTCTATCAATACT+TGG | + | chr7_2:82663157-82663176 | Msa1082560:three_prime_UTR | 30.0% | |
| ! | TTCGTTGGTATTGAACAAAT+TGG | - | chr7_2:82661016-82661035 | None:intergenic | 30.0% |
| ATTCTCAAATTCAGTTTCGT+TGG | - | chr7_2:82661031-82661050 | None:intergenic | 30.0% | |
| !!! | TGAGATTGTGTTGTTTTTGT+TGG | - | chr7_2:82661054-82661073 | None:intergenic | 30.0% |
| ! | GAAGTTCTTGAATTTTGCTT+TGG | - | chr7_2:82661103-82661122 | None:intergenic | 30.0% |
| TCAACCACAACTATGAAAAT+GGG | + | chr7_2:82661343-82661362 | Msa1082560:CDS | 30.0% | |
| ! | AATTCCCATTTTCATAGTTG+TGG | - | chr7_2:82661350-82661369 | None:intergenic | 30.0% |
| CACTTGCACAATATCTTTAA+TGG | - | chr7_2:82661404-82661423 | None:intergenic | 30.0% | |
| ATTAGTTACATCACGTATGA+AGG | + | chr7_2:82661678-82661697 | Msa1082560:intron | 30.0% | |
| TTAGTTACATCACGTATGAA+GGG | + | chr7_2:82661679-82661698 | Msa1082560:intron | 30.0% | |
| TATTCTTAATACAGGCTAGT+TGG | - | chr7_2:82661764-82661783 | None:intergenic | 30.0% | |
| AAATGGTGAAAAGCTCAAAA+GGG | - | chr7_2:82661960-82661979 | None:intergenic | 30.0% | |
| TAAATGGTGAAAAGCTCAAA+AGG | - | chr7_2:82661961-82661980 | None:intergenic | 30.0% | |
| TGCAAGTTATTTATCCAAAC+AGG | - | chr7_2:82662010-82662029 | None:intergenic | 30.0% | |
| TGAAACCAAACATACACTTA+GGG | - | chr7_2:82662348-82662367 | None:intergenic | 30.0% | |
| !! | ATGTTTGGTTTCACTTTTAG+AGG | + | chr7_2:82662355-82662374 | Msa1082560:intron | 30.0% |
| !! | TGTTTGGTTTCACTTTTAGA+GGG | + | chr7_2:82662356-82662375 | Msa1082560:intron | 30.0% |
| GCTTCAAGTAGAATCAAATA+TGG | - | chr7_2:82662491-82662510 | None:intergenic | 30.0% | |
| TTCTACTTGAAGCTAGAAAT+TGG | + | chr7_2:82662498-82662517 | Msa1082560:intron | 30.0% | |
| ! | TTTGGTTAAATGTGAGTTGA+AGG | - | chr7_2:82662611-82662630 | None:intergenic | 30.0% |
| !! | TGATACCGTGAAATTGATTT+TGG | - | chr7_2:82662629-82662648 | None:intergenic | 30.0% |
| ! | AATGAATGCTAGTTGATGTT+TGG | + | chr7_2:82662749-82662768 | Msa1082560:intron | 30.0% |
| ! | ATGAATGCTAGTTGATGTTT+GGG | + | chr7_2:82662750-82662769 | Msa1082560:intron | 30.0% |
| AGACCGGCAATTAAAAATTA+CGG | + | chr7_2:82662814-82662833 | Msa1082560:CDS | 30.0% | |
| AAGGTAACATTGAGAATATC+TGG | - | chr7_2:82662946-82662965 | None:intergenic | 30.0% | |
| TATAAGACCCATCATTTGAT+AGG | + | chr7_2:82663050-82663069 | Msa1082560:three_prime_UTR | 30.0% | |
| TTCAAGTCCTATCAAATGAT+GGG | - | chr7_2:82663060-82663079 | None:intergenic | 30.0% | |
| ATTCAAGTCCTATCAAATGA+TGG | - | chr7_2:82663061-82663080 | None:intergenic | 30.0% | |
| TATCTCAGTCTATCAATACT+TGG | + | chr7_2:82663157-82663176 | Msa1082560:three_prime_UTR | 30.0% | |
| GATGTTGTATCCGTTGAAAA+CGG | + | chr7_2:82661274-82661293 | Msa1082560:CDS | 35.0% | |
| CTCAACCACAACTATGAAAA+TGG | + | chr7_2:82661342-82661361 | Msa1082560:CDS | 35.0% | |
| !! | TGTTTGATGATGATCAAGCA+AGG | + | chr7_2:82661422-82661441 | Msa1082560:CDS | 35.0% |
| !! | GTTTGATGATGATCAAGCAA+GGG | + | chr7_2:82661423-82661442 | Msa1082560:CDS | 35.0% |
| GTATGAAGGGATCAATTTCT+TGG | + | chr7_2:82661692-82661711 | Msa1082560:intron | 35.0% | |
| GGCTATATTAGTTAACATCG+TGG | - | chr7_2:82661743-82661762 | None:intergenic | 35.0% | |
| ATTAGTTAGAGCTAGCGATT+AGG | + | chr7_2:82661839-82661858 | Msa1082560:intron | 35.0% | |
| ! | AGCTTTTCACCATTTATCCA+TGG | + | chr7_2:82661965-82661984 | Msa1082560:intron | 35.0% |
| ! | TAACTTGCAGTTTATAGCAC+AGG | + | chr7_2:82662021-82662040 | Msa1082560:intron | 35.0% |
| TACAAGAGAGTAACTACACA+TGG | + | chr7_2:82662098-82662117 | Msa1082560:intron | 35.0% | |
| GCTATATTGGAGAACTTACA+AGG | + | chr7_2:82662239-82662258 | Msa1082560:intron | 35.0% | |
| GAGCTTATCAACTAGTGTTT+GGG | - | chr7_2:82662304-82662323 | None:intergenic | 35.0% | |
| !! | CAAACACTAGTTGATAAGCT+CGG | + | chr7_2:82662303-82662322 | Msa1082560:intron | 35.0% |
| GTGAAACCAAACATACACTT+AGG | - | chr7_2:82662349-82662368 | None:intergenic | 35.0% | |
| !! | GTTTGGTTTCACTTTTAGAG+GGG | + | chr7_2:82662357-82662376 | Msa1082560:intron | 35.0% |
| !!! | TACACCTCTAGAATCACTTT+TGG | - | chr7_2:82662383-82662402 | None:intergenic | 35.0% |
| TACTTGAAGCTAGAAATTGG+AGG | + | chr7_2:82662501-82662520 | Msa1082560:intron | 35.0% | |
| TCATCTAGAGATATTGAGAC+CGG | + | chr7_2:82662798-82662817 | Msa1082560:CDS | 35.0% | |
| !! | CCTCCGTAATTTTTAATTGC+CGG | - | chr7_2:82662820-82662839 | None:intergenic | 35.0% |
| ATTGCATTGAATTGCTACCT+AGG | - | chr7_2:82662974-82662993 | None:intergenic | 35.0% | |
| GATGTTGTATCCGTTGAAAA+CGG | + | chr7_2:82661274-82661293 | Msa1082560:CDS | 35.0% | |
| CTCAACCACAACTATGAAAA+TGG | + | chr7_2:82661342-82661361 | Msa1082560:CDS | 35.0% | |
| !! | TGTTTGATGATGATCAAGCA+AGG | + | chr7_2:82661422-82661441 | Msa1082560:CDS | 35.0% |
| !! | GTTTGATGATGATCAAGCAA+GGG | + | chr7_2:82661423-82661442 | Msa1082560:CDS | 35.0% |
| GTATGAAGGGATCAATTTCT+TGG | + | chr7_2:82661692-82661711 | Msa1082560:intron | 35.0% | |
| GGCTATATTAGTTAACATCG+TGG | - | chr7_2:82661743-82661762 | None:intergenic | 35.0% | |
| ATTAGTTAGAGCTAGCGATT+AGG | + | chr7_2:82661839-82661858 | Msa1082560:intron | 35.0% | |
| ! | AGCTTTTCACCATTTATCCA+TGG | + | chr7_2:82661965-82661984 | Msa1082560:intron | 35.0% |
| ! | TAACTTGCAGTTTATAGCAC+AGG | + | chr7_2:82662021-82662040 | Msa1082560:intron | 35.0% |
| TACAAGAGAGTAACTACACA+TGG | + | chr7_2:82662098-82662117 | Msa1082560:intron | 35.0% | |
| GCTATATTGGAGAACTTACA+AGG | + | chr7_2:82662239-82662258 | Msa1082560:intron | 35.0% | |
| GAGCTTATCAACTAGTGTTT+GGG | - | chr7_2:82662304-82662323 | None:intergenic | 35.0% | |
| !! | CAAACACTAGTTGATAAGCT+CGG | + | chr7_2:82662303-82662322 | Msa1082560:intron | 35.0% |
| GTGAAACCAAACATACACTT+AGG | - | chr7_2:82662349-82662368 | None:intergenic | 35.0% | |
| !! | GTTTGGTTTCACTTTTAGAG+GGG | + | chr7_2:82662357-82662376 | Msa1082560:intron | 35.0% |
| !!! | TACACCTCTAGAATCACTTT+TGG | - | chr7_2:82662383-82662402 | None:intergenic | 35.0% |
| TACTTGAAGCTAGAAATTGG+AGG | + | chr7_2:82662501-82662520 | Msa1082560:intron | 35.0% | |
| TCATCTAGAGATATTGAGAC+CGG | + | chr7_2:82662798-82662817 | Msa1082560:CDS | 35.0% | |
| !! | CCTCCGTAATTTTTAATTGC+CGG | - | chr7_2:82662820-82662839 | None:intergenic | 35.0% |
| ATTGCATTGAATTGCTACCT+AGG | - | chr7_2:82662974-82662993 | None:intergenic | 35.0% | |
| GTCGTTTCTCTTAAGCTTCA+AGG | + | chr7_2:82661298-82661317 | Msa1082560:CDS | 40.0% | |
| TTCATAGTTGTGGTTGAGCT+AGG | - | chr7_2:82661340-82661359 | None:intergenic | 40.0% | |
| CGCGTTCTTAAGGAGAAATT+TGG | + | chr7_2:82661373-82661392 | Msa1082560:CDS | 40.0% | |
| TGATCAAGCAAGGGAAACAA+CGG | + | chr7_2:82661432-82661451 | Msa1082560:CDS | 40.0% | |
| ACATGGCATCCATGGATAAA+TGG | - | chr7_2:82661977-82661996 | None:intergenic | 40.0% | |
| AAACAGGCTGTTGAGAAACA+TGG | - | chr7_2:82661994-82662013 | None:intergenic | 40.0% | |
| ATGTTTCTCAACAGCCTGTT+TGG | + | chr7_2:82661993-82662012 | Msa1082560:intron | 40.0% | |
| CGAGCTTATCAACTAGTGTT+TGG | - | chr7_2:82662305-82662324 | None:intergenic | 40.0% | |
| CAAAATCAATTCTGCTCGAG+AGG | - | chr7_2:82662465-82662484 | None:intergenic | 40.0% | |
| !!! | TGTTTGGGTGTGGGTTTTTT+AGG | + | chr7_2:82662765-82662784 | Msa1082560:intron | 40.0% |
| CCGGCAATTAAAAATTACGG+AGG | + | chr7_2:82662817-82662836 | Msa1082560:CDS | 40.0% | |
| GTGCAAGTGTTATCTGTTGA+AGG | + | chr7_2:82662844-82662863 | Msa1082560:CDS | 40.0% | |
| CAAGTGTTATCTGTTGAAGG+TGG | + | chr7_2:82662847-82662866 | Msa1082560:CDS | 40.0% | |
| GACTGTGTTGTGGAATATGT+TGG | + | chr7_2:82662871-82662890 | Msa1082560:CDS | 40.0% | |
| ! | AGCTTTAACACCTGATCCAA+TGG | - | chr7_2:82662905-82662924 | None:intergenic | 40.0% |
| CAATGTTACCTTCTCTACCT+AGG | + | chr7_2:82662954-82662973 | Msa1082560:CDS | 40.0% | |
| AATTGCTACCTAGGTAGAGA+AGG | - | chr7_2:82662965-82662984 | None:intergenic | 40.0% | |
| GTCGTTTCTCTTAAGCTTCA+AGG | + | chr7_2:82661298-82661317 | Msa1082560:CDS | 40.0% | |
| TTCATAGTTGTGGTTGAGCT+AGG | - | chr7_2:82661340-82661359 | None:intergenic | 40.0% | |
| CGCGTTCTTAAGGAGAAATT+TGG | + | chr7_2:82661373-82661392 | Msa1082560:CDS | 40.0% | |
| TGATCAAGCAAGGGAAACAA+CGG | + | chr7_2:82661432-82661451 | Msa1082560:CDS | 40.0% | |
| ACATGGCATCCATGGATAAA+TGG | - | chr7_2:82661977-82661996 | None:intergenic | 40.0% | |
| AAACAGGCTGTTGAGAAACA+TGG | - | chr7_2:82661994-82662013 | None:intergenic | 40.0% | |
| ATGTTTCTCAACAGCCTGTT+TGG | + | chr7_2:82661993-82662012 | Msa1082560:intron | 40.0% | |
| CGAGCTTATCAACTAGTGTT+TGG | - | chr7_2:82662305-82662324 | None:intergenic | 40.0% | |
| CAAAATCAATTCTGCTCGAG+AGG | - | chr7_2:82662465-82662484 | None:intergenic | 40.0% | |
| !!! | TGTTTGGGTGTGGGTTTTTT+AGG | + | chr7_2:82662765-82662784 | Msa1082560:intron | 40.0% |
| CCGGCAATTAAAAATTACGG+AGG | + | chr7_2:82662817-82662836 | Msa1082560:CDS | 40.0% | |
| GTGCAAGTGTTATCTGTTGA+AGG | + | chr7_2:82662844-82662863 | Msa1082560:CDS | 40.0% | |
| CAAGTGTTATCTGTTGAAGG+TGG | + | chr7_2:82662847-82662866 | Msa1082560:CDS | 40.0% | |
| GACTGTGTTGTGGAATATGT+TGG | + | chr7_2:82662871-82662890 | Msa1082560:CDS | 40.0% | |
| ! | AGCTTTAACACCTGATCCAA+TGG | - | chr7_2:82662905-82662924 | None:intergenic | 40.0% |
| CAATGTTACCTTCTCTACCT+AGG | + | chr7_2:82662954-82662973 | Msa1082560:CDS | 40.0% | |
| AATTGCTACCTAGGTAGAGA+AGG | - | chr7_2:82662965-82662984 | None:intergenic | 40.0% | |
| CTCATTACGCACCATAACTC+CGG | + | chr7_2:82660964-82660983 | Msa1082560:CDS | 45.0% | |
| !! | AGAGGATGAACGGATTACTG+TGG | - | chr7_2:82661128-82661147 | None:intergenic | 45.0% |
| ! | AGAAGACTGGTTCTCGTTAG+CGG | - | chr7_2:82661152-82661171 | None:intergenic | 45.0% |
| TAACGAGAACCAGTCTTCTC+CGG | + | chr7_2:82661153-82661172 | Msa1082560:CDS | 45.0% | |
| AGTATAATCCCGGAGAAGAC+TGG | - | chr7_2:82661165-82661184 | None:intergenic | 45.0% | |
| TTCTTGGCGGAGTATAATCC+CGG | - | chr7_2:82661175-82661194 | None:intergenic | 45.0% | |
| TGTGAGGTCGAATTTCTTGG+CGG | - | chr7_2:82661188-82661207 | None:intergenic | 45.0% | |
| AGCTGTGAGGTCGAATTTCT+TGG | - | chr7_2:82661191-82661210 | None:intergenic | 45.0% | |
| !! | AGAAACGACGCCGTTTTCAA+CGG | - | chr7_2:82661287-82661306 | None:intergenic | 45.0% |
| GGGAATTGAACGCGTTCTTA+AGG | + | chr7_2:82661363-82661382 | Msa1082560:CDS | 45.0% | |
| GTTGAGAAACATGGCATCCA+TGG | - | chr7_2:82661985-82662004 | None:intergenic | 45.0% | |
| CTCGGATAAGCCAATCCAAA+CGG | + | chr7_2:82662321-82662340 | Msa1082560:intron | 45.0% | |
| ACATACACTTAGGGTCCGTT+TGG | - | chr7_2:82662339-82662358 | None:intergenic | 45.0% | |
| ACGGACCCTAAGTGTATGTT+TGG | + | chr7_2:82662340-82662359 | Msa1082560:intron | 45.0% | |
| ! | TGCTAGTTGATGTTTGGGTG+TGG | + | chr7_2:82662755-82662774 | Msa1082560:intron | 45.0% |
| ! | GCTAGTTGATGTTTGGGTGT+GGG | + | chr7_2:82662756-82662775 | Msa1082560:intron | 45.0% |
| !!! | TTGGGTGTGGGTTTTTTAGG+CGG | + | chr7_2:82662768-82662787 | Msa1082560:intron | 45.0% |
| TATGTTGGACCTGAGTCCAT+TGG | + | chr7_2:82662886-82662905 | Msa1082560:CDS | 45.0% | |
| AGGTGTTAAAGCTGCGATCA+AGG | + | chr7_2:82662912-82662931 | Msa1082560:CDS | 45.0% | |
| CTCATTACGCACCATAACTC+CGG | + | chr7_2:82660964-82660983 | Msa1082560:CDS | 45.0% | |
| !! | AGAGGATGAACGGATTACTG+TGG | - | chr7_2:82661128-82661147 | None:intergenic | 45.0% |
| ! | AGAAGACTGGTTCTCGTTAG+CGG | - | chr7_2:82661152-82661171 | None:intergenic | 45.0% |
| TAACGAGAACCAGTCTTCTC+CGG | + | chr7_2:82661153-82661172 | Msa1082560:CDS | 45.0% | |
| AGTATAATCCCGGAGAAGAC+TGG | - | chr7_2:82661165-82661184 | None:intergenic | 45.0% | |
| TTCTTGGCGGAGTATAATCC+CGG | - | chr7_2:82661175-82661194 | None:intergenic | 45.0% | |
| TGTGAGGTCGAATTTCTTGG+CGG | - | chr7_2:82661188-82661207 | None:intergenic | 45.0% | |
| AGCTGTGAGGTCGAATTTCT+TGG | - | chr7_2:82661191-82661210 | None:intergenic | 45.0% | |
| !! | AGAAACGACGCCGTTTTCAA+CGG | - | chr7_2:82661287-82661306 | None:intergenic | 45.0% |
| GGGAATTGAACGCGTTCTTA+AGG | + | chr7_2:82661363-82661382 | Msa1082560:CDS | 45.0% | |
| GTTGAGAAACATGGCATCCA+TGG | - | chr7_2:82661985-82662004 | None:intergenic | 45.0% | |
| CTCGGATAAGCCAATCCAAA+CGG | + | chr7_2:82662321-82662340 | Msa1082560:intron | 45.0% | |
| ACATACACTTAGGGTCCGTT+TGG | - | chr7_2:82662339-82662358 | None:intergenic | 45.0% | |
| ACGGACCCTAAGTGTATGTT+TGG | + | chr7_2:82662340-82662359 | Msa1082560:intron | 45.0% | |
| ! | TGCTAGTTGATGTTTGGGTG+TGG | + | chr7_2:82662755-82662774 | Msa1082560:intron | 45.0% |
| ! | GCTAGTTGATGTTTGGGTGT+GGG | + | chr7_2:82662756-82662775 | Msa1082560:intron | 45.0% |
| !!! | TTGGGTGTGGGTTTTTTAGG+CGG | + | chr7_2:82662768-82662787 | Msa1082560:intron | 45.0% |
| TATGTTGGACCTGAGTCCAT+TGG | + | chr7_2:82662886-82662905 | Msa1082560:CDS | 45.0% | |
| AGGTGTTAAAGCTGCGATCA+AGG | + | chr7_2:82662912-82662931 | Msa1082560:CDS | 45.0% | |
| !!! | TTATTATTATTTATCTTTTA+TGG | + | chr7_2:82661585-82661604 | Msa1082560:intron | 5.0% |
| !!! | TTATTATTATTTATCTTTTA+TGG | + | chr7_2:82661585-82661604 | Msa1082560:intron | 5.0% |
| TGATGGAGCTTCCGGAGTTA+TGG | - | chr7_2:82660978-82660997 | None:intergenic | 50.0% | |
| AACTCCGGAAGCTCCATCAA+TGG | + | chr7_2:82660979-82660998 | Msa1082560:CDS | 50.0% | |
| GGAGTTAGAGTCGCCATTGA+TGG | - | chr7_2:82660995-82661014 | None:intergenic | 50.0% | |
| CGTTAGCGGTAGAGGATGAA+CGG | - | chr7_2:82661138-82661157 | None:intergenic | 50.0% | |
| AACGAGAACCAGTCTTCTCC+GGG | + | chr7_2:82661154-82661173 | Msa1082560:CDS | 50.0% | |
| TCGAGAACGAGATCGACGTT+TGG | - | chr7_2:82661214-82661233 | None:intergenic | 50.0% | |
| CGTCCTTACCTCATCTCTGA+CGG | + | chr7_2:82661241-82661260 | Msa1082560:CDS | 50.0% | |
| AGCAAGGGAAACAACGGTTG+AGG | + | chr7_2:82661438-82661457 | Msa1082560:CDS | 50.0% | |
| CACTTAGGGTCCGTTTGGAT+TGG | - | chr7_2:82662334-82662353 | None:intergenic | 50.0% | |
| GGGGCCAAAAGTGATTCTAG+AGG | + | chr7_2:82662376-82662395 | Msa1082560:intron | 50.0% | |
| TGAAGGTGGTGACTGTGTTG+TGG | + | chr7_2:82662861-82662880 | Msa1082560:CDS | 50.0% | |
| ! | ACACCTGATCCAATGGACTC+AGG | - | chr7_2:82662898-82662917 | None:intergenic | 50.0% |
| TGATGGAGCTTCCGGAGTTA+TGG | - | chr7_2:82660978-82660997 | None:intergenic | 50.0% | |
| AACTCCGGAAGCTCCATCAA+TGG | + | chr7_2:82660979-82660998 | Msa1082560:CDS | 50.0% | |
| GGAGTTAGAGTCGCCATTGA+TGG | - | chr7_2:82660995-82661014 | None:intergenic | 50.0% | |
| CGTTAGCGGTAGAGGATGAA+CGG | - | chr7_2:82661138-82661157 | None:intergenic | 50.0% | |
| AACGAGAACCAGTCTTCTCC+GGG | + | chr7_2:82661154-82661173 | Msa1082560:CDS | 50.0% | |
| TCGAGAACGAGATCGACGTT+TGG | - | chr7_2:82661214-82661233 | None:intergenic | 50.0% | |
| CGTCCTTACCTCATCTCTGA+CGG | + | chr7_2:82661241-82661260 | Msa1082560:CDS | 50.0% | |
| AGCAAGGGAAACAACGGTTG+AGG | + | chr7_2:82661438-82661457 | Msa1082560:CDS | 50.0% | |
| CACTTAGGGTCCGTTTGGAT+TGG | - | chr7_2:82662334-82662353 | None:intergenic | 50.0% | |
| GGGGCCAAAAGTGATTCTAG+AGG | + | chr7_2:82662376-82662395 | Msa1082560:intron | 50.0% | |
| TGAAGGTGGTGACTGTGTTG+TGG | + | chr7_2:82662861-82662880 | Msa1082560:CDS | 50.0% | |
| ! | ACACCTGATCCAATGGACTC+AGG | - | chr7_2:82662898-82662917 | None:intergenic | 50.0% |
| GTCGCCATTGATGGAGCTTC+CGG | - | chr7_2:82660986-82661005 | None:intergenic | 55.0% | |
| ! | CTGGTTCTCGTTAGCGGTAG+AGG | - | chr7_2:82661146-82661165 | None:intergenic | 55.0% |
| ! | GATCGACGTTTGGAGCTGTG+AGG | - | chr7_2:82661204-82661223 | None:intergenic | 55.0% |
| CCTCCGTCAGAGATGAGGTA+AGG | - | chr7_2:82661247-82661266 | None:intergenic | 55.0% | |
| CCTTACCTCATCTCTGACGG+AGG | + | chr7_2:82661244-82661263 | Msa1082560:CDS | 55.0% | |
| CGTTTCCTCCGTCAGAGATG+AGG | - | chr7_2:82661252-82661271 | None:intergenic | 55.0% | |
| GGACCTGAGTCCATTGGATC+AGG | + | chr7_2:82662892-82662911 | Msa1082560:CDS | 55.0% | |
| GTCGCCATTGATGGAGCTTC+CGG | - | chr7_2:82660986-82661005 | None:intergenic | 55.0% | |
| ! | CTGGTTCTCGTTAGCGGTAG+AGG | - | chr7_2:82661146-82661165 | None:intergenic | 55.0% |
| ! | GATCGACGTTTGGAGCTGTG+AGG | - | chr7_2:82661204-82661223 | None:intergenic | 55.0% |
| CCTCCGTCAGAGATGAGGTA+AGG | - | chr7_2:82661247-82661266 | None:intergenic | 55.0% | |
| CCTTACCTCATCTCTGACGG+AGG | + | chr7_2:82661244-82661263 | Msa1082560:CDS | 55.0% | |
| CGTTTCCTCCGTCAGAGATG+AGG | - | chr7_2:82661252-82661271 | None:intergenic | 55.0% | |
| GGACCTGAGTCCATTGGATC+AGG | + | chr7_2:82662892-82662911 | Msa1082560:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 82660900 | 82663223 | 82660900 | ID=Msa1082560;Name=Msa1082560 |
| chr7_2 | mRNA | 82660900 | 82663223 | 82660900 | ID=Msa1082560-mRNA-1;Parent=Msa1082560;Name=Msa1082560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=32|1|1|1|1|1|2|248|238 |
| chr7_2 | exon | 82660900 | 82661459 | 82660900 | ID=Msa1082560-mRNA-1:exon:21447;Parent=Msa1082560-mRNA-1 |
| chr7_2 | exon | 82662787 | 82663223 | 82662787 | ID=Msa1082560-mRNA-1:exon:21448;Parent=Msa1082560-mRNA-1 |
| chr7_2 | five_prime_UTR | 82660900 | 82660931 | 82660900 | ID=Msa1082560-mRNA-1:five_prime_utr;Parent=Msa1082560-mRNA-1 |
| chr7_2 | CDS | 82660932 | 82661459 | 82660932 | ID=Msa1082560-mRNA-1:cds;Parent=Msa1082560-mRNA-1 |
| chr7_2 | CDS | 82662787 | 82662975 | 82662787 | ID=Msa1082560-mRNA-1:cds;Parent=Msa1082560-mRNA-1 |
| chr7_2 | three_prime_UTR | 82662976 | 82663223 | 82662976 | ID=Msa1082560-mRNA-1:three_prime_utr;Parent=Msa1082560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
