Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410290 | XP_024635084.1 | 89.474 | 304 | 1 | 1 | 1 | 304 | 1 | 273 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410290 | sp|Q9M2S6|SDIR1_ARATH | 69.707 | 307 | 56 | 5 | 1 | 304 | 1 | 273 | 1.69e-137 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410290 | A0A7J0E893 | 74.138 | 290 | 55 | 1 | 1 | 290 | 1 | 270 | 8.61e-155 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108850 | Msa0410290 | 0.812080 | 5.074659e-51 | -8.615850e-47 |
| Msa0151950 | Msa0410290 | 0.805437 | 1.335800e-49 | -8.615850e-47 |
| Msa0410290 | Msa0464900 | 0.802328 | 5.909907e-49 | -8.615850e-47 |
| Msa0410290 | Msa0507940 | 0.838826 | 2.283042e-57 | -8.615850e-47 |
| Msa0410290 | Msa1085060 | 0.824463 | 7.962142e-54 | -8.615850e-47 |
| Msa0279770 | Msa0410290 | 0.817267 | 3.602887e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410290 | MtrunA17_Chr3g0112041 | 89.474 | 304 | 1 | 1 | 1 | 304 | 1 | 273 | 0.0 | 547 |
| Msa0410290 | MtrunA17_Chr4g0031921 | 51.961 | 306 | 110 | 3 | 1 | 304 | 1 | 271 | 9.85e-100 | 294 |
| Msa0410290 | MtrunA17_Chr4g0031911 | 51.307 | 306 | 112 | 3 | 1 | 304 | 1 | 271 | 1.59e-99 | 293 |
| Msa0410290 | MtrunA17_Chr6g0461611 | 45.283 | 53 | 29 | 0 | 235 | 287 | 227 | 279 | 7.22e-14 | 70.9 |
| Msa0410290 | MtrunA17_Chr1g0169651 | 61.905 | 42 | 16 | 0 | 244 | 285 | 683 | 724 | 7.90e-14 | 72.0 |
| Msa0410290 | MtrunA17_Chr5g0417501 | 51.163 | 43 | 21 | 0 | 244 | 286 | 115 | 157 | 2.47e-12 | 65.5 |
| Msa0410290 | MtrunA17_Chr5g0406031 | 49.057 | 53 | 26 | 1 | 234 | 285 | 179 | 231 | 2.59e-12 | 65.5 |
| Msa0410290 | MtrunA17_Chr8g0371291 | 50.000 | 52 | 25 | 1 | 235 | 285 | 171 | 222 | 4.58e-12 | 64.7 |
| Msa0410290 | MtrunA17_Chr2g0305161 | 50.000 | 50 | 24 | 1 | 236 | 285 | 135 | 183 | 1.15e-11 | 62.8 |
| Msa0410290 | MtrunA17_Chr1g0200721 | 52.830 | 53 | 24 | 1 | 243 | 294 | 234 | 286 | 1.42e-11 | 64.7 |
| Msa0410290 | MtrunA17_Chr7g0275601 | 51.020 | 49 | 23 | 1 | 238 | 285 | 102 | 150 | 2.46e-11 | 61.2 |
| Msa0410290 | MtrunA17_Chr8g0388231 | 52.941 | 51 | 21 | 2 | 236 | 285 | 331 | 379 | 4.18e-11 | 63.2 |
| Msa0410290 | MtrunA17_Chr6g0451051 | 45.455 | 55 | 29 | 1 | 242 | 295 | 64 | 118 | 5.85e-11 | 60.1 |
| Msa0410290 | MtrunA17_Chr6g0451041 | 47.917 | 48 | 24 | 1 | 244 | 290 | 18 | 65 | 6.68e-11 | 58.2 |
| Msa0410290 | MtrunA17_Chr5g0409201 | 40.278 | 72 | 42 | 1 | 233 | 303 | 82 | 153 | 7.54e-11 | 59.7 |
| Msa0410290 | MtrunA17_Chr2g0325141 | 33.721 | 86 | 51 | 2 | 213 | 297 | 65 | 145 | 8.01e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0410290 | AT3G55530.1 | 69.707 | 307 | 56 | 5 | 1 | 304 | 1 | 273 | 1.72e-138 | 392 |
| Msa0410290 | AT1G04790.1 | 60.465 | 43 | 17 | 0 | 243 | 285 | 588 | 630 | 1.96e-14 | 73.9 |
| Msa0410290 | AT1G49850.1 | 41.379 | 87 | 38 | 2 | 212 | 285 | 158 | 244 | 2.70e-13 | 68.9 |
| Msa0410290 | AT1G71980.1 | 60.000 | 45 | 17 | 1 | 242 | 285 | 230 | 274 | 3.62e-12 | 67.0 |
| Msa0410290 | AT2G17730.1 | 38.028 | 71 | 43 | 1 | 216 | 285 | 168 | 238 | 3.69e-12 | 65.5 |
| Msa0410290 | AT5G66070.5 | 43.077 | 65 | 33 | 2 | 225 | 285 | 154 | 218 | 3.87e-12 | 65.1 |
| Msa0410290 | AT5G66070.1 | 43.077 | 65 | 33 | 2 | 225 | 285 | 154 | 218 | 3.87e-12 | 65.1 |
| Msa0410290 | AT3G58720.1 | 35.714 | 84 | 48 | 1 | 227 | 304 | 127 | 210 | 5.28e-12 | 65.1 |
| Msa0410290 | AT5G66070.2 | 43.077 | 65 | 33 | 2 | 225 | 285 | 178 | 242 | 5.32e-12 | 65.1 |
| Msa0410290 | AT3G58720.4 | 35.714 | 84 | 48 | 1 | 227 | 304 | 147 | 230 | 6.21e-12 | 65.1 |
| Msa0410290 | AT3G58720.2 | 41.667 | 60 | 35 | 0 | 227 | 286 | 155 | 214 | 1.30e-11 | 64.3 |
| Msa0410290 | AT5G24870.3 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa0410290 | AT5G24870.1 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa0410290 | AT5G24870.2 | 46.154 | 52 | 28 | 0 | 239 | 290 | 463 | 514 | 2.06e-11 | 64.7 |
| Msa0410290 | AT5G10650.1 | 46.000 | 50 | 27 | 0 | 239 | 288 | 470 | 519 | 2.08e-11 | 64.7 |
| Msa0410290 | AT5G10650.2 | 46.000 | 50 | 27 | 0 | 239 | 288 | 470 | 519 | 2.08e-11 | 64.7 |
| Msa0410290 | AT5G08139.1 | 45.652 | 46 | 25 | 0 | 242 | 287 | 307 | 352 | 2.19e-11 | 64.3 |
| Msa0410290 | AT5G60820.1 | 46.154 | 52 | 28 | 0 | 236 | 287 | 364 | 415 | 2.28e-11 | 64.3 |
| Msa0410290 | AT1G35625.1 | 50.000 | 54 | 25 | 2 | 242 | 294 | 231 | 283 | 2.33e-11 | 63.9 |
| Msa0410290 | AT1G74410.1 | 32.895 | 76 | 34 | 2 | 211 | 285 | 159 | 218 | 2.54e-11 | 62.8 |
| Msa0410290 | AT3G13430.4 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0410290 | AT3G13430.3 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0410290 | AT3G13430.1 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0410290 | AT3G13430.2 | 36.000 | 75 | 48 | 0 | 225 | 299 | 206 | 280 | 2.63e-11 | 63.9 |
| Msa0410290 | AT4G35840.1 | 38.028 | 71 | 43 | 1 | 216 | 285 | 163 | 233 | 2.88e-11 | 62.8 |
| Msa0410290 | AT3G58720.3 | 41.667 | 60 | 35 | 0 | 227 | 286 | 155 | 214 | 3.09e-11 | 63.5 |
| Msa0410290 | AT5G42940.2 | 37.143 | 70 | 38 | 1 | 216 | 285 | 615 | 678 | 3.31e-11 | 64.3 |
| Msa0410290 | AT5G42940.1 | 37.143 | 70 | 38 | 1 | 216 | 285 | 615 | 678 | 3.31e-11 | 64.3 |
| Msa0410290 | AT1G14200.1 | 40.909 | 44 | 26 | 0 | 243 | 286 | 108 | 151 | 6.19e-11 | 60.8 |
| Msa0410290 | AT3G51325.1 | 44.898 | 49 | 25 | 1 | 240 | 286 | 22 | 70 | 6.69e-11 | 58.5 |
| Msa0410290 | AT5G66160.1 | 59.091 | 44 | 17 | 1 | 243 | 285 | 231 | 274 | 7.47e-11 | 62.4 |
| Msa0410290 | AT5G66160.2 | 59.091 | 44 | 17 | 1 | 243 | 285 | 231 | 274 | 7.68e-11 | 62.4 |
Find 104 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAAGAGCTGATATAGAAAA+TGG | 0.205583 | 3_2:-51961575 | Msa0410290:CDS |
| GCAGCAGCCAGTGGCCTTCT+TGG | 0.225465 | 3_2:-51961017 | Msa0410290:CDS |
| GGCTGCTGCTGCATGAGCTT+GGG | 0.225768 | 3_2:+51961031 | None:intergenic |
| GAAGACCTTACCAGAAAATT+TGG | 0.231832 | 3_2:+51961226 | None:intergenic |
| TGGCTGCTGCTGCATGAGCT+TGG | 0.233454 | 3_2:+51961030 | None:intergenic |
| GTCCACAAATACAAGGTTTC+TGG | 0.243519 | 3_2:-51960634 | Msa0410290:CDS |
| TGCAAATTTCGAGCAGGATC+TGG | 0.318026 | 3_2:-51957555 | Msa0410290:CDS |
| TGTTCATTGTATTAAGTCTT+GGG | 0.325632 | 3_2:-51958760 | Msa0410290:CDS |
| GATATAGAAAATGGGTTTCC+AGG | 0.336999 | 3_2:-51961566 | Msa0410290:CDS |
| ATCTGATCGGAAACGGAGTT+TGG | 0.342721 | 3_2:+51962714 | None:intergenic |
| ATCTGATCTTCTTCGCTCTC+TGG | 0.349493 | 3_2:+51962755 | None:intergenic |
| ATCTCTTCCTCAGTCATAGA+AGG | 0.363639 | 3_2:+51960670 | None:intergenic |
| AGTCCCTTGTTGCCGCAGCC+AGG | 0.363766 | 3_2:+51957587 | None:intergenic |
| TTATGAAACTTTAAGAGCTC+TGG | 0.370204 | 3_2:-51960716 | Msa0410290:CDS |
| TATTTGATATTTCAGAATAT+CGG | 0.383826 | 3_2:-51961688 | Msa0410290:intron |
| TGCAAGCCGAGGGCGTCTGC+AGG | 0.384276 | 3_2:-51960952 | Msa0410290:CDS |
| AACTTGAATTAAAACTTCAT+AGG | 0.392308 | 3_2:+51961626 | None:intergenic |
| TTAAGTTTGTACTTGCTGTT+TGG | 0.399298 | 3_2:+51957272 | None:intergenic |
| CCAGAAAATTTGGTGACATC+TGG | 0.401145 | 3_2:+51961236 | None:intergenic |
| TGACAAACTTGGTAATCTAT+AGG | 0.405290 | 3_2:+51957310 | None:intergenic |
| TTTGTTACTTAACTCCCATA+TGG | 0.407086 | 3_2:+51958715 | None:intergenic |
| TATAGATTACCAAGTTTGTC+AGG | 0.415476 | 3_2:-51957308 | Msa0410290:three_prime_UTR |
| ATTCTGTTTGCAGCTCTGGC+TGG | 0.419069 | 3_2:-51961123 | Msa0410290:intron |
| TAGCTTGCCCTGCCTGCATC+AGG | 0.419997 | 3_2:-51958476 | Msa0410290:intron |
| AGTTCAGTATCATGAATAAC+AGG | 0.423414 | 3_2:+51961263 | None:intergenic |
| GACCACTTGATGTTCCCATA+TGG | 0.429257 | 3_2:-51958730 | Msa0410290:CDS |
| ATGTTCATTGTATTAAGTCT+TGG | 0.432436 | 3_2:-51958761 | Msa0410290:CDS |
| CGCCTCTCAGGTATAAATCC+TGG | 0.433691 | 3_2:+51961548 | None:intergenic |
| TTGCAGCTCTGGCTGGTGCT+TGG | 0.435630 | 3_2:-51961116 | Msa0410290:intron |
| TACCCTGACGTAGGGATTTG+AGG | 0.436821 | 3_2:-51957379 | Msa0410290:three_prime_UTR |
| ACCACTTGATGTTCCCATAT+GGG | 0.439149 | 3_2:-51958729 | Msa0410290:CDS |
| TTGTTACTTAACTCCCATAT+GGG | 0.441119 | 3_2:+51958716 | None:intergenic |
| AACTTTAAGAGCTCTGGATT+CGG | 0.443410 | 3_2:-51960710 | Msa0410290:CDS |
| TTCAGCTGGCACTTCTTGAT+CGG | 0.445031 | 3_2:-51960920 | Msa0410290:CDS |
| CATACCAATGCACGCCTCTC+AGG | 0.446355 | 3_2:+51961536 | None:intergenic |
| ATTCGATTCGATTCGATTCG+AGG | 0.450301 | 3_2:+51962778 | None:intergenic |
| ATTCCTCAAATCCCTACGTC+AGG | 0.450367 | 3_2:+51957376 | None:intergenic |
| TCAGCTGGCACTTCTTGATC+GGG | 0.463787 | 3_2:-51960919 | Msa0410290:CDS |
| ACGCTAGTTGCATTGATCCC+TGG | 0.464059 | 3_2:-51957605 | Msa0410290:CDS |
| AAGTAGTTCCTCAATGCAAC+AGG | 0.465568 | 3_2:-51959137 | Msa0410290:CDS |
| GACCAGAAACCTTGTATTTG+TGG | 0.466017 | 3_2:+51960632 | None:intergenic |
| GCAAATTTCGAGCAGGATCT+GGG | 0.475848 | 3_2:-51957554 | Msa0410290:CDS |
| GATCGGGAGTTTGATGATCT+AGG | 0.485183 | 3_2:-51960903 | Msa0410290:intron |
| GCAGGGTCTCAGACTTCAGC+TGG | 0.489685 | 3_2:-51960934 | Msa0410290:CDS |
| ACATAGCGACCTGACAAACT+TGG | 0.498142 | 3_2:+51957299 | None:intergenic |
| GTCCCTTGTTGCCGCAGCCA+GGG | 0.498993 | 3_2:+51957588 | None:intergenic |
| CAAGAGCTGATATAGAAAAT+GGG | 0.500384 | 3_2:-51961574 | Msa0410290:CDS |
| GGTAAAAGTAAAGCAAACTT+AGG | 0.504877 | 3_2:+51957204 | None:intergenic |
| AGGTTGAAGATCACGAGAAT+CGG | 0.508685 | 3_2:+51962798 | None:intergenic |
| GCTCACTTGCAGTGTATGCT+TGG | 0.508802 | 3_2:-51958527 | Msa0410290:CDS |
| CTTGTAATTACCCTGACGTA+GGG | 0.510822 | 3_2:-51957387 | Msa0410290:three_prime_UTR |
| GAAACAGACCTGATGCAGGC+AGG | 0.511840 | 3_2:+51958468 | None:intergenic |
| TCTTGATGGCTACAATGCTA+AGG | 0.511885 | 3_2:-51961088 | Msa0410290:CDS |
| AAGCTGAATCTGATCGGAAA+CGG | 0.513031 | 3_2:+51962707 | None:intergenic |
| GAAACCTTGTATTTGTGGAC+AGG | 0.524408 | 3_2:+51960637 | None:intergenic |
| CAGGATAATTCAAATGCGGT+TGG | 0.526813 | 3_2:-51958574 | Msa0410290:CDS |
| ATCCCTGGCTGCGGCAACAA+GGG | 0.527296 | 3_2:-51957590 | Msa0410290:CDS |
| CCTGCTCGAAATTTGCAGAC+AGG | 0.527651 | 3_2:+51957561 | None:intergenic |
| GCTCATGCAGCAGCAGCCAG+TGG | 0.529345 | 3_2:-51961026 | Msa0410290:CDS |
| TGAGACCCTGCAGACGCCCT+CGG | 0.529448 | 3_2:+51960946 | None:intergenic |
| TGTGTGGCCAAGAAGGCCAC+TGG | 0.533669 | 3_2:+51961010 | None:intergenic |
| ACATAATGATATTGCGGACA+TGG | 0.537633 | 3_2:-51957517 | Msa0410290:CDS |
| GTTCATTGTATTAAGTCTTG+GGG | 0.540363 | 3_2:-51958759 | Msa0410290:CDS |
| TCGTTTGTGGCAGAAGACAC+AGG | 0.541361 | 3_2:-51958593 | Msa0410290:intron |
| ATCATTTATATAGATTATTG+TGG | 0.542091 | 3_2:-51958786 | Msa0410290:intron |
| TATACCTGAGAGGCGTGCAT+TGG | 0.542114 | 3_2:-51961540 | Msa0410290:intron |
| CCTGTCTGCAAATTTCGAGC+AGG | 0.542234 | 3_2:-51957561 | Msa0410290:CDS |
| AACGCCTTCCACTTCGGCTG+AGG | 0.542790 | 3_2:-51959113 | Msa0410290:intron |
| GTGAGTGAGTTGGAATTACT+AGG | 0.546777 | 3_2:+51961410 | None:intergenic |
| GATCCCTGGCTGCGGCAACA+AGG | 0.548660 | 3_2:-51957591 | Msa0410290:CDS |
| TCTTCCTGTCCACAAATACA+AGG | 0.550485 | 3_2:-51960641 | Msa0410290:CDS |
| CAATGAAACAGACCTGATGC+AGG | 0.560277 | 3_2:+51958464 | None:intergenic |
| AAACAGACCTGATGCAGGCA+GGG | 0.562428 | 3_2:+51958469 | None:intergenic |
| GCAAGCCGAGGGCGTCTGCA+GGG | 0.564406 | 3_2:-51960951 | Msa0410290:CDS |
| TACTGCACCTTCTATGACTG+AGG | 0.566852 | 3_2:-51960677 | Msa0410290:CDS |
| TGCTTGGAGCAAGTTAATGT+TGG | 0.567132 | 3_2:-51958511 | Msa0410290:CDS |
| CGATAGCACTTGCAAGCCGA+GGG | 0.567822 | 3_2:-51960962 | Msa0410290:CDS |
| TACGAGAAAAGTGAGTGAGT+TGG | 0.568555 | 3_2:+51961400 | None:intergenic |
| CTGCTCGAAATTTGCAGACA+GGG | 0.568726 | 3_2:+51957562 | None:intergenic |
| TCGATAGCACTTGCAAGCCG+AGG | 0.569823 | 3_2:-51960963 | Msa0410290:CDS |
| AGATGATACCTCAGCCGAAG+TGG | 0.573491 | 3_2:+51959105 | None:intergenic |
| CGGCTTGCAAGTGCTATCGA+TGG | 0.576690 | 3_2:+51960966 | None:intergenic |
| GAACAAAAGCTGAATCTGAT+CGG | 0.586775 | 3_2:+51962701 | None:intergenic |
| TCCCATATGGGAACATCAAG+TGG | 0.587840 | 3_2:+51958728 | None:intergenic |
| TATAAATGTACAACAGTACA+AGG | 0.596806 | 3_2:+51957241 | None:intergenic |
| CTTGCAAGTGCTATCGATGG+AGG | 0.598024 | 3_2:+51960969 | None:intergenic |
| GTTGCATTGATCCCTGGCTG+CGG | 0.599433 | 3_2:-51957599 | Msa0410290:CDS |
| TCTTGTAATTACCCTGACGT+AGG | 0.609259 | 3_2:-51957388 | Msa0410290:three_prime_UTR |
| GATACCTCAGCCGAAGTGGA+AGG | 0.612027 | 3_2:+51959109 | None:intergenic |
| AGGCGTTGCCTGTTGCATTG+AGG | 0.614381 | 3_2:+51959129 | None:intergenic |
| GCAAGTGAGCTCATCATCAG+AGG | 0.615069 | 3_2:+51958540 | None:intergenic |
| TGATATTTCAGAATATCGGA+AGG | 0.617574 | 3_2:-51961684 | Msa0410290:intron |
| TTCCAGGATTTATACCTGAG+AGG | 0.618398 | 3_2:-51961550 | Msa0410290:CDS |
| GTAGTTCTGTGTGGCCAAGA+AGG | 0.622680 | 3_2:+51961003 | None:intergenic |
| CAGTGGACATAATGATATTG+CGG | 0.629961 | 3_2:-51957523 | Msa0410290:CDS |
| TTCCTCAAATCCCTACGTCA+GGG | 0.630184 | 3_2:+51957377 | None:intergenic |
| ACAGGCAACGCCTTCCACTT+CGG | 0.634794 | 3_2:-51959119 | Msa0410290:CDS |
| TAACATCTATAGTTGTTAGA+CGG | 0.639054 | 3_2:+51957345 | None:intergenic |
| TCTTGGTTCGGTAAAATGCA+TGG | 0.662796 | 3_2:+51962872 | None:intergenic |
| GGATCTGGGTGGAATGACAG+TGG | 0.668864 | 3_2:-51957540 | Msa0410290:CDS |
| GACACAGGATAATTCAAATG+CGG | 0.672978 | 3_2:-51958578 | Msa0410290:CDS |
| AATTTCGAGCAGGATCTGGG+TGG | 0.705429 | 3_2:-51957551 | Msa0410290:CDS |
| TATGCAATCGTAGTTCTGTG+TGG | 0.730334 | 3_2:+51960994 | None:intergenic |
| GAGACTTACGGAAATTGACG+AGG | 0.732054 | 3_2:+51962679 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGCTTTATATATATATTT+TGG | - | chr3_2:51959892-51959911 | Msa0410290:intron | 10.0% |
| !! | ACACATATATATATATATAT+GGG | - | chr3_2:51960449-51960468 | Msa0410290:intron | 10.0% |
| !! | TTACTATATTTACAAATTTA+TGG | - | chr3_2:51960685-51960704 | Msa0410290:CDS | 10.0% |
| !! | TTACTATATTTACAAATTTA+TGG | - | chr3_2:51960685-51960704 | Msa0410290:CDS | 10.0% |
| !!! | CAGTAATATAATTTTTTTTA+GGG | + | chr3_2:51960907-51960926 | None:intergenic | 10.0% |
| !!! | TCAGTAATATAATTTTTTTT+AGG | + | chr3_2:51960908-51960927 | None:intergenic | 10.0% |
| !! | GTATACTCTATATAATTATT+TGG | - | chr3_2:51958269-51958288 | Msa0410290:intron | 15.0% |
| !! | TATTTGATATTTCAGAATAT+CGG | - | chr3_2:51958405-51958424 | Msa0410290:intron | 15.0% |
| !!! | TATATTTTGGATAATTAACT+CGG | - | chr3_2:51959905-51959924 | Msa0410290:intron | 15.0% |
| !! | TGCTAATAATAAAAGATAAT+GGG | + | chr3_2:51960525-51960544 | None:intergenic | 15.0% |
| !! | ATGCTAATAATAAAAGATAA+TGG | + | chr3_2:51960524-51960543 | None:intergenic | 15.0% |
| !! | CACACATATATATATATATA+TGG | - | chr3_2:51960448-51960467 | Msa0410290:intron | 15.0% |
| !! | ATGCTAATAATAAAAGATAA+TGG | - | chr3_2:51960524-51960543 | Msa0410290:intron | 15.0% |
| !! | TGCTAATAATAAAAGATAAT+GGG | - | chr3_2:51960525-51960544 | Msa0410290:intron | 15.0% |
| !!! | AATGCATGATATATTTTTTA+TGG | - | chr3_2:51960577-51960596 | Msa0410290:intron | 15.0% |
| !!! | ATGCATGATATATTTTTTAT+GGG | - | chr3_2:51960578-51960597 | Msa0410290:intron | 15.0% |
| !!! | ATGCATGATATATTTTTTTA+TGG | - | chr3_2:51960763-51960782 | Msa0410290:intron | 15.0% |
| !!! | TGCATGATATATTTTTTTAT+GGG | - | chr3_2:51960764-51960783 | Msa0410290:intron | 15.0% |
| !! | ATCATTTATATAGATTATTG+TGG | - | chr3_2:51961307-51961326 | Msa0410290:intron | 15.0% |
| !!! | AACTACAAGTAAAATTTTAT+AGG | + | chr3_2:51962014-51962033 | None:intergenic | 15.0% |
| !! | ACAAGATAAAAACAAATAAA+CGG | + | chr3_2:51962462-51962481 | None:intergenic | 15.0% |
| !!! | GCGATTTTAAGATTTAATTA+GGG | - | chr3_2:51957569-51957588 | Msa0410290:CDS | 20.0% |
| !! | AGTTTATTATGAATAATCTG+CGG | - | chr3_2:51957602-51957621 | Msa0410290:CDS | 20.0% |
| !!! | TGTTTGATTATGTTAGTTTA+TGG | - | chr3_2:51957967-51957986 | Msa0410290:intron | 20.0% |
| !!! | TTCTGAAATATCAAATAAGA+TGG | + | chr3_2:51958402-51958421 | None:intergenic | 20.0% |
| !! | AACTTGAATTAAAACTTCAT+AGG | + | chr3_2:51958470-51958489 | None:intergenic | 20.0% |
| !! | ATCAGTACAAAATAATACAT+TGG | + | chr3_2:51958628-51958647 | None:intergenic | 20.0% |
| !!! | AAATGATACACATTTTATCA+AGG | - | chr3_2:51958901-51958920 | Msa0410290:intron | 20.0% |
| !! | AAGAAGAAAAAAACTGAATA+AGG | + | chr3_2:51959343-51959362 | None:intergenic | 20.0% |
| !! | AATGTCAAAATCCATTTAAA+GGG | + | chr3_2:51959527-51959546 | None:intergenic | 20.0% |
| !!! | TTTCAATTTGATTTATGACA+TGG | + | chr3_2:51959621-51959640 | None:intergenic | 20.0% |
| !! | AAATTGAAAATTCATATGTG+AGG | - | chr3_2:51959632-51959651 | Msa0410290:intron | 20.0% |
| !! | AATTGAAAATTCATATGTGA+GGG | - | chr3_2:51959633-51959652 | Msa0410290:intron | 20.0% |
| !! | CATATATATATATATATGGG+AGG | - | chr3_2:51960452-51960471 | Msa0410290:intron | 20.0% |
| !! | TATATAGCATTAAAACTAGT+GGG | + | chr3_2:51960493-51960512 | None:intergenic | 20.0% |
| !! | ATATATAGCATTAAAACTAG+TGG | + | chr3_2:51960494-51960513 | None:intergenic | 20.0% |
| !!! | TAAATGGTTTTTTTGTATGA+TGG | - | chr3_2:51961199-51961218 | Msa0410290:intron | 20.0% |
| !! | CATTCAAGAAAATAATAGAA+TGG | + | chr3_2:51961280-51961299 | None:intergenic | 20.0% |
| !!! | TACAATCTTTTCATTTAGAT+TGG | - | chr3_2:51961448-51961467 | Msa0410290:intron | 20.0% |
| !!! | ATTTTACTTGTAGTTGAAAT+TGG | - | chr3_2:51962019-51962038 | Msa0410290:intron | 20.0% |
| !!! | TAAAATGCTTTTCAAAACAA+GGG | + | chr3_2:51962083-51962102 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAGCATTTTACTT+TGG | - | chr3_2:51962086-51962105 | Msa0410290:intron | 20.0% |
| !! | AACAAAAAAAAATAGTGTTC+AGG | + | chr3_2:51962152-51962171 | None:intergenic | 20.0% |
| !!! | AATATCTACACAACTTTTTT+GGG | + | chr3_2:51962320-51962339 | None:intergenic | 20.0% |
| !!! | AAATATCTACACAACTTTTT+TGG | + | chr3_2:51962321-51962340 | None:intergenic | 20.0% |
| !!! | TCAATAATGTTGATTTAATG+TGG | + | chr3_2:51962348-51962367 | None:intergenic | 20.0% |
| !! | TCATAATTAAAAATTAGACG+AGG | + | chr3_2:51962610-51962629 | None:intergenic | 20.0% |
| ! | GATGAAATTGAAAATGGAAT+TGG | + | chr3_2:51957469-51957488 | None:intergenic | 25.0% |
| !!! | CGCGATTTTAAGATTTAATT+AGG | - | chr3_2:51957568-51957587 | Msa0410290:CDS | 25.0% |
| !!! | ATTTTGAGGAAAATGGTTTA+AGG | - | chr3_2:51957734-51957753 | Msa0410290:intron | 25.0% |
| !!! | TAGTGTTTTTGTTTGATTAG+AGG | - | chr3_2:51957774-51957793 | Msa0410290:intron | 25.0% |
| ! | TATGATACTTGCATAATGAA+TGG | - | chr3_2:51957818-51957837 | Msa0410290:intron | 25.0% |
| ! | ATGATACTTGCATAATGAAT+GGG | - | chr3_2:51957819-51957838 | Msa0410290:intron | 25.0% |
| ! | TTTGTAAGGAAAATGGTTTA+AGG | - | chr3_2:51957924-51957943 | Msa0410290:intron | 25.0% |
| ! | TTAGGGATTAAAATTAGAGT+AGG | - | chr3_2:51958004-51958023 | Msa0410290:intron | 25.0% |
| !!! | AAAAATCTTCCCCTTATTTT+AGG | + | chr3_2:51958053-51958072 | None:intergenic | 25.0% |
| !! | AGAATAACAGAAATGTGTTT+TGG | - | chr3_2:51958132-51958151 | Msa0410290:intron | 25.0% |
| !!! | AGAAATGTGTTTTGGATATT+AGG | - | chr3_2:51958140-51958159 | Msa0410290:intron | 25.0% |
| ! | AAGAATAGTTAAGAAAACGT+TGG | + | chr3_2:51958167-51958186 | None:intergenic | 25.0% |
| !!! | AAGGTTTTAGTTATTGATTC+TGG | - | chr3_2:51958428-51958447 | Msa0410290:intron | 25.0% |
| ! | GAATGTCAAAATCCATTTAA+AGG | + | chr3_2:51959528-51959547 | None:intergenic | 25.0% |
| !! | GTTATTTCGATTAAGAACTT+TGG | - | chr3_2:51959753-51959772 | Msa0410290:intron | 25.0% |
| ! | TCTATATTGAAAGAGAAACA+TGG | - | chr3_2:51959933-51959952 | Msa0410290:intron | 25.0% |
| !! | ATTAGTAGATTAGCCAAAAT+AGG | - | chr3_2:51960084-51960103 | Msa0410290:intron | 25.0% |
| !! | TTTTTATGGGTTTAGATTCA+AGG | - | chr3_2:51960591-51960610 | Msa0410290:intron | 25.0% |
| ! | ATTTACATGCCCTAAAATAA+TGG | - | chr3_2:51960709-51960728 | Msa0410290:CDS | 25.0% |
| ! | TTTACATGCCCTAAAATAAT+GGG | - | chr3_2:51960710-51960729 | Msa0410290:CDS | 25.0% |
| !!! | CATAACTACCCATTATTTTA+GGG | + | chr3_2:51960721-51960740 | None:intergenic | 25.0% |
| !! | TCATAACTACCCATTATTTT+AGG | + | chr3_2:51960722-51960741 | None:intergenic | 25.0% |
| !! | TTTTTATGGGTTTAGATTCA+AGG | - | chr3_2:51960591-51960610 | Msa0410290:intron | 25.0% |
| ! | TTCAAGGTTATTAATAGTGT+AGG | - | chr3_2:51960607-51960626 | Msa0410290:intron | 25.0% |
| ! | CATGTTATTACTTATTACTG+TGG | - | chr3_2:51961128-51961147 | Msa0410290:intron | 25.0% |
| ! | AAGTGCTTATAATCTGTAAA+TGG | - | chr3_2:51961183-51961202 | Msa0410290:intron | 25.0% |
| ! | ATGTTCATTGTATTAAGTCT+TGG | - | chr3_2:51961332-51961351 | Msa0410290:intron | 25.0% |
| ! | TGTTCATTGTATTAAGTCTT+GGG | - | chr3_2:51961333-51961352 | Msa0410290:intron | 25.0% |
| ! | GATTATGTGATAAGAAAATC+TGG | - | chr3_2:51961814-51961833 | Msa0410290:intron | 25.0% |
| !! | GTAAAATGCTTTTCAAAACA+AGG | + | chr3_2:51962084-51962103 | None:intergenic | 25.0% |
| !!! | ACTATTTTTTTTTGTTCCGA+AGG | - | chr3_2:51962156-51962175 | Msa0410290:intron | 25.0% |
| ! | CTAAGTATATAAAAACCTCA+TGG | - | chr3_2:51962394-51962413 | Msa0410290:intron | 25.0% |
| ! | TAACATCTATAGTTGTTAGA+CGG | + | chr3_2:51962751-51962770 | None:intergenic | 25.0% |
| ! | TATAAATGTACAACAGTACA+AGG | + | chr3_2:51962855-51962874 | None:intergenic | 25.0% |
| GAAATTGAAAATGGAATTGG+TGG | + | chr3_2:51957466-51957485 | None:intergenic | 30.0% | |
| TGAGGAGATGAAATTGAAAA+TGG | + | chr3_2:51957475-51957494 | None:intergenic | 30.0% | |
| GAAAAATGTGAAAACATAGC+AGG | + | chr3_2:51957505-51957524 | None:intergenic | 30.0% | |
| ! | TTGATTTTTGCTGCATTTTG+AGG | - | chr3_2:51957720-51957739 | Msa0410290:intron | 30.0% |
| ATGGTTTAAGGATCACTAAA+TGG | - | chr3_2:51957746-51957765 | Msa0410290:intron | 30.0% | |
| CATACAACATTAACAAATCG+CGG | + | chr3_2:51957802-51957821 | None:intergenic | 30.0% | |
| AACACTTCAATTCCATTTAG+TGG | + | chr3_2:51957951-51957970 | None:intergenic | 30.0% | |
| ! | TATGTTAGTTTATGGCCATA+TGG | - | chr3_2:51957975-51957994 | Msa0410290:intron | 30.0% |
| TGTTACTCATGCCTAAAATA+AGG | - | chr3_2:51958039-51958058 | Msa0410290:intron | 30.0% | |
| GTTACTCATGCCTAAAATAA+GGG | - | chr3_2:51958040-51958059 | Msa0410290:intron | 30.0% | |
| TTACTCATGCCTAAAATAAG+GGG | - | chr3_2:51958041-51958060 | Msa0410290:intron | 30.0% | |
| !! | TCAGCATTGATGAAAATTCA+CGG | + | chr3_2:51958110-51958129 | None:intergenic | 30.0% |
| GATTTCAGATAAGTGATGAT+AGG | - | chr3_2:51958226-51958245 | Msa0410290:intron | 30.0% | |
| TGATATTTCAGAATATCGGA+AGG | - | chr3_2:51958409-51958428 | Msa0410290:intron | 30.0% | |
| CAAGAGCTGATATAGAAAAT+GGG | - | chr3_2:51958519-51958538 | Msa0410290:CDS | 30.0% | |
| TATACAGAGTAAGTTGTCAA+TGG | + | chr3_2:51958798-51958817 | None:intergenic | 30.0% | |
| AGTTCAGTATCATGAATAAC+AGG | + | chr3_2:51958833-51958852 | None:intergenic | 30.0% | |
| ! | TTATGAAACTTTAAGAGCTC+TGG | - | chr3_2:51959377-51959396 | Msa0410290:intron | 30.0% |
| !! | TGACAGATTACTTACTTTTG+GGG | + | chr3_2:51959486-51959505 | None:intergenic | 30.0% |
| !! | CTGACAGATTACTTACTTTT+GGG | + | chr3_2:51959487-51959506 | None:intergenic | 30.0% |
| ! | TCTGACAGATTACTTACTTT+TGG | + | chr3_2:51959488-51959507 | None:intergenic | 30.0% |
| TGTTATTACCTCCCTTTAAA+TGG | - | chr3_2:51959513-51959532 | Msa0410290:intron | 30.0% | |
| !! | AATAGTGAGTTTCACTTTTC+GGG | + | chr3_2:51959597-51959616 | None:intergenic | 30.0% |
| !! | CAATAGTGAGTTTCACTTTT+CGG | + | chr3_2:51959598-51959617 | None:intergenic | 30.0% |
| TGATATATTGATCGATGACA+TGG | - | chr3_2:51959708-51959727 | Msa0410290:intron | 30.0% | |
| GTAATAATAGGCATCACTAA+AGG | + | chr3_2:51959781-51959800 | None:intergenic | 30.0% | |
| ACACGACATAGAGTAATAAT+AGG | + | chr3_2:51959793-51959812 | None:intergenic | 30.0% | |
| ! | TTTTATCTGGCAATATGAAG+AGG | - | chr3_2:51959818-51959837 | Msa0410290:intron | 30.0% |
| GGTAGTTATAATTTAACAGC+TGG | + | chr3_2:51960197-51960216 | None:intergenic | 30.0% | |
| ATTCACTTGTCTAGACAAAA+TGG | + | chr3_2:51961056-51961075 | None:intergenic | 30.0% | |
| !! | ATAACTTTGCTGATTCTTTG+AGG | - | chr3_2:51961092-51961111 | Msa0410290:CDS | 30.0% |
| !! | TAACTTTGCTGATTCTTTGA+GGG | - | chr3_2:51961093-51961112 | Msa0410290:CDS | 30.0% |
| GTTCATTGTATTAAGTCTTG+GGG | - | chr3_2:51961334-51961353 | Msa0410290:intron | 30.0% | |
| ! | TTGTTACTTAACTCCCATAT+GGG | + | chr3_2:51961380-51961399 | None:intergenic | 30.0% |
| ! | TTTGTTACTTAACTCCCATA+TGG | + | chr3_2:51961381-51961400 | None:intergenic | 30.0% |
| ! | TCTTTTCATTTAGATTGGAG+TGG | - | chr3_2:51961453-51961472 | Msa0410290:intron | 30.0% |
| ! | GATTCATTTCTTTTCGTTTG+TGG | - | chr3_2:51961487-51961506 | Msa0410290:intron | 30.0% |
| ATCTAACATAGGGTTTACAT+AGG | - | chr3_2:51961846-51961865 | Msa0410290:intron | 30.0% | |
| TCTAACATAGGGTTTACATA+GGG | - | chr3_2:51961847-51961866 | Msa0410290:intron | 30.0% | |
| CTTGAGTTTACCTATTGAAA+AGG | - | chr3_2:51962124-51962143 | Msa0410290:intron | 30.0% | |
| ! | TCAGTTTCTAGATTCTAAAC+GGG | + | chr3_2:51962196-51962215 | None:intergenic | 30.0% |
| TGTAGATATCTGACTTTACA+TGG | - | chr3_2:51962262-51962281 | Msa0410290:intron | 30.0% | |
| CAAGGAAAAAACTAGATTAG+GGG | + | chr3_2:51962297-51962316 | None:intergenic | 30.0% | |
| GCAAGGAAAAAACTAGATTA+GGG | + | chr3_2:51962298-51962317 | None:intergenic | 30.0% | |
| ! | TGACAAACTTGGTAATCTAT+AGG | + | chr3_2:51962786-51962805 | None:intergenic | 30.0% |
| TATAGATTACCAAGTTTGTC+AGG | - | chr3_2:51962785-51962804 | Msa0410290:five_prime_UTR | 30.0% | |
| !! | TTAAGTTTGTACTTGCTGTT+TGG | + | chr3_2:51962824-51962843 | None:intergenic | 30.0% |
| ! | TTTTCGTATGTGTCTTGGTT+CGG | + | chr3_2:51957236-51957255 | None:intergenic | 35.0% |
| ! | CGTATTTTTCGTATGTGTCT+TGG | + | chr3_2:51957241-51957260 | None:intergenic | 35.0% |
| AGACACATACGAAAAATACG+TGG | - | chr3_2:51957241-51957260 | Msa0410290:three_prime_UTR | 35.0% | |
| GAACAAAAGCTGAATCTGAT+CGG | + | chr3_2:51957395-51957414 | None:intergenic | 35.0% | |
| ! | AACATAGCAGGAACATTTTG+AGG | + | chr3_2:51957493-51957512 | None:intergenic | 35.0% |
| ATCGTTTATCATGCTTGAAG+TGG | - | chr3_2:51957682-51957701 | Msa0410290:intron | 35.0% | |
| TTATCATGCTTGAAGTGGTT+TGG | - | chr3_2:51957687-51957706 | Msa0410290:intron | 35.0% | |
| TGCAGCAAAAATCAAAACCT+AGG | + | chr3_2:51957715-51957734 | None:intergenic | 35.0% | |
| !! | TTGCTGCATTTTGAGGAAAA+TGG | - | chr3_2:51957727-51957746 | Msa0410290:intron | 35.0% |
| TCGAAGATTACACAATTGCA+AGG | + | chr3_2:51957880-51957899 | None:intergenic | 35.0% | |
| TGGTGTGTTTGTAAGGAAAA+TGG | - | chr3_2:51957917-51957936 | Msa0410290:intron | 35.0% | |
| ATGGTTTAAGGACCACTAAA+TGG | - | chr3_2:51957936-51957955 | Msa0410290:intron | 35.0% | |
| AATCCCTAACAACTACCATA+TGG | + | chr3_2:51957993-51958012 | None:intergenic | 35.0% | |
| GATGATAGGTTTAGTATGTG+TGG | - | chr3_2:51958240-51958259 | Msa0410290:intron | 35.0% | |
| AATCACAGAGCGGATATAAT+CGG | + | chr3_2:51958322-51958341 | None:intergenic | 35.0% | |
| TCCTCGAAAAACAAAACTCA+TGG | + | chr3_2:51958498-51958517 | None:intergenic | 35.0% | |
| GCAAGAGCTGATATAGAAAA+TGG | - | chr3_2:51958518-51958537 | Msa0410290:CDS | 35.0% | |
| ! | GATATAGAAAATGGGTTTCC+AGG | - | chr3_2:51958527-51958546 | Msa0410290:CDS | 35.0% |
| CATCGAAGAAAACACAGAAA+AGG | + | chr3_2:51958772-51958791 | None:intergenic | 35.0% | |
| !! | TGTCACCAAATTTTCTGGTA+AGG | - | chr3_2:51958862-51958881 | Msa0410290:intron | 35.0% |
| GAAGACCTTACCAGAAAATT+TGG | + | chr3_2:51958870-51958889 | None:intergenic | 35.0% | |
| !! | AACTTTAAGAGCTCTGGATT+CGG | - | chr3_2:51959383-51959402 | Msa0410290:intron | 35.0% |
| GTCAAAATCCATTTAAAGGG+AGG | + | chr3_2:51959524-51959543 | None:intergenic | 35.0% | |
| !! | ATAGTGAGTTTCACTTTTCG+GGG | + | chr3_2:51959596-51959615 | None:intergenic | 35.0% |
| ATGTGAGGGTAAACAAGTAA+AGG | - | chr3_2:51959647-51959666 | Msa0410290:intron | 35.0% | |
| !!! | ATGGAAATGCTGATTTTCAC+TGG | - | chr3_2:51959727-51959746 | Msa0410290:intron | 35.0% |
| !! | TGTCGTGTAGTCATTTTATC+TGG | - | chr3_2:51959805-51959824 | Msa0410290:intron | 35.0% |
| ! | AGTTATCTTGAAGAGCATGT+TGG | - | chr3_2:51959996-51960015 | Msa0410290:intron | 35.0% |
| AAGCACTTGTTTGACTGTTT+AGG | + | chr3_2:51960062-51960081 | None:intergenic | 35.0% | |
| GGTAGTTATGATTTAACAGC+TGG | - | chr3_2:51960546-51960565 | Msa0410290:intron | 35.0% | |
| GGTAGTTATGATTTAACAGC+TGG | - | chr3_2:51960546-51960565 | Msa0410290:intron | 35.0% | |
| CTTGTCTAGACAAAATGGAA+GGG | + | chr3_2:51961051-51961070 | None:intergenic | 35.0% | |
| ACTTGTCTAGACAAAATGGA+AGG | + | chr3_2:51961052-51961071 | None:intergenic | 35.0% | |
| GACACAGGATAATTCAAATG+CGG | - | chr3_2:51961515-51961534 | Msa0410290:intron | 35.0% | |
| AGGTAAACTCAAGCTCATAA+TGG | + | chr3_2:51962117-51962136 | None:intergenic | 35.0% | |
| GGAGAAATCATTCATTCCTT+CGG | + | chr3_2:51962175-51962194 | None:intergenic | 35.0% | |
| GGCAAGGAAAAAACTAGATT+AGG | + | chr3_2:51962299-51962318 | None:intergenic | 35.0% | |
| CAGTGGACATAATGATATTG+CGG | - | chr3_2:51962570-51962589 | Msa0410290:intron | 35.0% | |
| ACATAATGATATTGCGGACA+TGG | - | chr3_2:51962576-51962595 | Msa0410290:intron | 35.0% | |
| !! | TCTTGGTTCGGTAAAATGCA+TGG | + | chr3_2:51957224-51957243 | None:intergenic | 40.0% |
| AGGTTGAAGATCACGAGAAT+CGG | + | chr3_2:51957298-51957317 | None:intergenic | 40.0% | |
| ! | ATTCGATTCGATTCGATTCG+AGG | + | chr3_2:51957318-51957337 | None:intergenic | 40.0% |
| AAGCTGAATCTGATCGGAAA+CGG | + | chr3_2:51957389-51957408 | None:intergenic | 40.0% | |
| CATTTGGGAATGGAGACTTA+CGG | + | chr3_2:51957429-51957448 | None:intergenic | 40.0% | |
| !! | TGAGAGAAAGCATTTGGGAA+TGG | + | chr3_2:51957439-51957458 | None:intergenic | 40.0% |
| TTGCATAATGAATGGGTGCA+GGG | - | chr3_2:51957826-51957845 | Msa0410290:intron | 40.0% | |
| !! | CGATAATGCTTGAAGCGTTT+TGG | - | chr3_2:51957897-51957916 | Msa0410290:intron | 40.0% |
| !! | AGCGTTTTGGTGTGTTTGTA+AGG | - | chr3_2:51957910-51957929 | Msa0410290:intron | 40.0% |
| ATGGCCATATGGTAGTTGTT+AGG | - | chr3_2:51957986-51958005 | Msa0410290:intron | 40.0% | |
| TGGCCATATGGTAGTTGTTA+GGG | - | chr3_2:51957987-51958006 | Msa0410290:intron | 40.0% | |
| ATCACAGAGCGGATATAATC+GGG | + | chr3_2:51958321-51958340 | None:intergenic | 40.0% | |
| ATTCAACAGGAATCACAGAG+CGG | + | chr3_2:51958332-51958351 | None:intergenic | 40.0% | |
| GCTTGAGGATGAAATTCAAC+AGG | + | chr3_2:51958345-51958364 | None:intergenic | 40.0% | |
| CAACACTAAACACATGCTTG+AGG | + | chr3_2:51958360-51958379 | None:intergenic | 40.0% | |
| !!! | GCCATGAGTTTTGTTTTTCG+AGG | - | chr3_2:51958494-51958513 | Msa0410290:CDS | 40.0% |
| TTCCAGGATTTATACCTGAG+AGG | - | chr3_2:51958543-51958562 | Msa0410290:CDS | 40.0% | |
| ! | GTGAGTGAGTTGGAATTACT+AGG | + | chr3_2:51958686-51958705 | None:intergenic | 40.0% |
| TACGAGAAAAGTGAGTGAGT+TGG | + | chr3_2:51958696-51958715 | None:intergenic | 40.0% | |
| !! | TCACTCACTTTTCTCGTAAC+AGG | - | chr3_2:51958698-51958717 | Msa0410290:intron | 40.0% |
| ! | CCAGAAAATTTGGTGACATC+TGG | + | chr3_2:51958860-51958879 | None:intergenic | 40.0% |
| ! | CCAGATGTCACCAAATTTTC+TGG | - | chr3_2:51958857-51958876 | Msa0410290:intron | 40.0% |
| ! | TCTTGATGGCTACAATGCTA+AGG | - | chr3_2:51959005-51959024 | Msa0410290:intron | 40.0% |
| ! | TATGCAATCGTAGTTCTGTG+TGG | + | chr3_2:51959102-51959121 | None:intergenic | 40.0% |
| ATCTCTTCCTCAGTCATAGA+AGG | + | chr3_2:51959426-51959445 | None:intergenic | 40.0% | |
| TCTTCCTGTCCACAAATACA+AGG | - | chr3_2:51959452-51959471 | Msa0410290:intron | 40.0% | |
| GAAACCTTGTATTTGTGGAC+AGG | + | chr3_2:51959459-51959478 | None:intergenic | 40.0% | |
| GTCCACAAATACAAGGTTTC+TGG | - | chr3_2:51959459-51959478 | Msa0410290:intron | 40.0% | |
| GACCAGAAACCTTGTATTTG+TGG | + | chr3_2:51959464-51959483 | None:intergenic | 40.0% | |
| ATTAGTGAGTAGTGACTGAC+AGG | - | chr3_2:51959862-51959881 | Msa0410290:intron | 40.0% | |
| ! | TGGCTTATGAACGCCTATTT+TGG | + | chr3_2:51960100-51960119 | None:intergenic | 40.0% |
| ! | ATTCTCTCTGGTGCCAATTT+GGG | - | chr3_2:51960349-51960368 | Msa0410290:intron | 40.0% |
| ATCTATGTGTGTCTGTGTGA+GGG | + | chr3_2:51960661-51960680 | None:intergenic | 40.0% | |
| TATCTATGTGTGTCTGTGTG+AGG | + | chr3_2:51960662-51960681 | None:intergenic | 40.0% | |
| ATCTATGTGTGTCTGTGTGA+GGG | + | chr3_2:51960661-51960680 | None:intergenic | 40.0% | |
| TATCTATGTGTGTCTGTGTG+AGG | + | chr3_2:51960662-51960681 | None:intergenic | 40.0% | |
| AAGTAGTTCCTCAATGCAAC+AGG | - | chr3_2:51960956-51960975 | Msa0410290:CDS | 40.0% | |
| ACCACTTGATGTTCCCATAT+GGG | - | chr3_2:51961364-51961383 | Msa0410290:intron | 40.0% | |
| TTCATTTAGATTGGAGTGGC+AGG | - | chr3_2:51961457-51961476 | Msa0410290:intron | 40.0% | |
| CAGGATAATTCAAATGCGGT+TGG | - | chr3_2:51961519-51961538 | Msa0410290:intron | 40.0% | |
| TGCTTGGAGCAAGTTAATGT+TGG | - | chr3_2:51961582-51961601 | Msa0410290:CDS | 40.0% | |
| CAGAGATGATTCAGTTGAAC+TGG | + | chr3_2:51961715-51961734 | None:intergenic | 40.0% | |
| ! | GATAAGAAAATCTGGAGCGT+TGG | - | chr3_2:51961822-51961841 | Msa0410290:intron | 40.0% |
| AACATAGGGTTTACATAGGG+TGG | - | chr3_2:51961850-51961869 | Msa0410290:intron | 40.0% | |
| CAAGGGCAATGCTACAAAAA+AGG | + | chr3_2:51962066-51962085 | None:intergenic | 40.0% | |
| ! | TGTTCAGGTGCCTTTTCAAT+AGG | + | chr3_2:51962137-51962156 | None:intergenic | 40.0% |
| GGAAAAAACTAGATTAGGGG+AGG | + | chr3_2:51962294-51962313 | None:intergenic | 40.0% | |
| !!! | CTACACAACTTTTTTGGGCA+AGG | + | chr3_2:51962315-51962334 | None:intergenic | 40.0% |
| ! | TCGACAAAGTATCAACCATG+AGG | + | chr3_2:51962412-51962431 | None:intergenic | 40.0% |
| TCTTGTAATTACCCTGACGT+AGG | - | chr3_2:51962705-51962724 | Msa0410290:five_prime_UTR | 40.0% | |
| CTTGTAATTACCCTGACGTA+GGG | - | chr3_2:51962706-51962725 | Msa0410290:five_prime_UTR | 40.0% | |
| ATCTGATCTTCTTCGCTCTC+TGG | + | chr3_2:51957341-51957360 | None:intergenic | 45.0% | |
| ATCTGATCGGAAACGGAGTT+TGG | + | chr3_2:51957382-51957401 | None:intergenic | 45.0% | |
| GAGACTTACGGAAATTGACG+AGG | + | chr3_2:51957417-51957436 | None:intergenic | 45.0% | |
| !! | GCGTGTGAGAGAAAGCATTT+GGG | + | chr3_2:51957444-51957463 | None:intergenic | 45.0% |
| CTTGCATAATGAATGGGTGC+AGG | - | chr3_2:51957825-51957844 | Msa0410290:intron | 45.0% | |
| GTTCATTCTGTTTGCAGCTC+TGG | - | chr3_2:51958966-51958985 | Msa0410290:intron | 45.0% | |
| !!! | GGTGCTTGGTGTTTTCTTGA+TGG | - | chr3_2:51958991-51959010 | Msa0410290:intron | 45.0% |
| TTCAGCTGGCACTTCTTGAT+CGG | - | chr3_2:51959173-51959192 | Msa0410290:intron | 45.0% | |
| ! | GATCGGGAGTTTGATGATCT+AGG | - | chr3_2:51959190-51959209 | Msa0410290:intron | 45.0% |
| TACTGCACCTTCTATGACTG+AGG | - | chr3_2:51959416-51959435 | Msa0410290:intron | 45.0% | |
| !! | AGTTTCACTTTTCGGGGATG+GGG | + | chr3_2:51959590-51959609 | None:intergenic | 45.0% |
| !! | GAGTTTCACTTTTCGGGGAT+GGG | + | chr3_2:51959591-51959610 | None:intergenic | 45.0% |
| !! | TGAGTTTCACTTTTCGGGGA+TGG | + | chr3_2:51959592-51959611 | None:intergenic | 45.0% |
| GAGCGAGATTGTGTTTGGAT+TGG | + | chr3_2:51960120-51960139 | None:intergenic | 45.0% | |
| AGAGAGAGCGAGATTGTGTT+TGG | + | chr3_2:51960125-51960144 | None:intergenic | 45.0% | |
| TTGACACACACAACCCACTT+GGG | - | chr3_2:51960265-51960284 | Msa0410290:intron | 45.0% | |
| ! | GATTCTCTCTGGTGCCAATT+TGG | - | chr3_2:51960348-51960367 | Msa0410290:intron | 45.0% |
| GCTAAATAGCCCACCCAAAT+TGG | + | chr3_2:51960365-51960384 | None:intergenic | 45.0% | |
| TCGTGTTGAGCTTGTAGACT+TGG | - | chr3_2:51961246-51961265 | Msa0410290:CDS | 45.0% | |
| GACCACTTGATGTTCCCATA+TGG | - | chr3_2:51961363-51961382 | Msa0410290:intron | 45.0% | |
| TCCCATATGGGAACATCAAG+TGG | + | chr3_2:51961368-51961387 | None:intergenic | 45.0% | |
| CAATGAAACAGACCTGATGC+AGG | + | chr3_2:51961632-51961651 | None:intergenic | 45.0% | |
| !! | GAGCGTTGGCATCTAACATA+GGG | - | chr3_2:51961836-51961855 | Msa0410290:intron | 45.0% |
| CTGCTCGAAATTTGCAGACA+GGG | + | chr3_2:51962534-51962553 | None:intergenic | 45.0% | |
| TGCAAATTTCGAGCAGGATC+TGG | - | chr3_2:51962538-51962557 | Msa0410290:intron | 45.0% | |
| GCAAATTTCGAGCAGGATCT+GGG | - | chr3_2:51962539-51962558 | Msa0410290:intron | 45.0% | |
| TTCCTCAAATCCCTACGTCA+GGG | + | chr3_2:51962719-51962738 | None:intergenic | 45.0% | |
| ATTCCTCAAATCCCTACGTC+AGG | + | chr3_2:51962720-51962739 | None:intergenic | 45.0% | |
| ACATAGCGACCTGACAAACT+TGG | + | chr3_2:51962797-51962816 | None:intergenic | 45.0% | |
| !! | GGCGTGTGAGAGAAAGCATT+TGG | + | chr3_2:51957445-51957464 | None:intergenic | 50.0% |
| ! | CTTGAAGTGGTTTGGCTCCT+AGG | - | chr3_2:51957695-51957714 | Msa0410290:intron | 50.0% |
| CGCCTCTCAGGTATAAATCC+TGG | + | chr3_2:51958548-51958567 | None:intergenic | 50.0% | |
| ! | TATACCTGAGAGGCGTGCAT+TGG | - | chr3_2:51958553-51958572 | Msa0410290:CDS | 50.0% |
| ! | ATTCTGTTTGCAGCTCTGGC+TGG | - | chr3_2:51958970-51958989 | Msa0410290:intron | 50.0% |
| ! | GTAGTTCTGTGTGGCCAAGA+AGG | + | chr3_2:51959093-51959112 | None:intergenic | 50.0% |
| CTTGCAAGTGCTATCGATGG+AGG | + | chr3_2:51959127-51959146 | None:intergenic | 50.0% | |
| TCAGCTGGCACTTCTTGATC+GGG | - | chr3_2:51959174-51959193 | Msa0410290:intron | 50.0% | |
| CTTGACACACACAACCCACT+TGG | - | chr3_2:51960264-51960283 | Msa0410290:intron | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | - | chr3_2:51960296-51960315 | Msa0410290:intron | 50.0% |
| GAATCGAACCTGAGACCTTG+CGG | + | chr3_2:51960333-51960352 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+TGG | - | chr3_2:51960337-51960356 | Msa0410290:intron | 50.0% | |
| ! | TCTCTGGTGCCAATTTGGGT+GGG | - | chr3_2:51960353-51960372 | Msa0410290:intron | 50.0% |
| AGATGATACCTCAGCCGAAG+TGG | + | chr3_2:51960991-51961010 | None:intergenic | 50.0% | |
| TACCGCCAGGGATATTACAC+GGG | + | chr3_2:51961158-51961177 | None:intergenic | 50.0% | |
| GTACCGCCAGGGATATTACA+CGG | + | chr3_2:51961159-51961178 | None:intergenic | 50.0% | |
| TGTAATATCCCTGGCGGTAC+AGG | - | chr3_2:51961159-51961178 | Msa0410290:intron | 50.0% | |
| GTAATATCCCTGGCGGTACA+GGG | - | chr3_2:51961160-51961179 | Msa0410290:intron | 50.0% | |
| TCGTTTGTGGCAGAAGACAC+AGG | - | chr3_2:51961500-51961519 | Msa0410290:intron | 50.0% | |
| GCAAGTGAGCTCATCATCAG+AGG | + | chr3_2:51961556-51961575 | None:intergenic | 50.0% | |
| GCTCACTTGCAGTGTATGCT+TGG | - | chr3_2:51961566-51961585 | Msa0410290:CDS | 50.0% | |
| AAACAGACCTGATGCAGGCA+GGG | + | chr3_2:51961627-51961646 | None:intergenic | 50.0% | |
| !! | GGAGCGTTGGCATCTAACAT+AGG | - | chr3_2:51961835-51961854 | Msa0410290:intron | 50.0% |
| ! | ACGCTAGTTGCATTGATCCC+TGG | - | chr3_2:51962488-51962507 | Msa0410290:intron | 50.0% |
| CCTGCTCGAAATTTGCAGAC+AGG | + | chr3_2:51962535-51962554 | None:intergenic | 50.0% | |
| CCTGTCTGCAAATTTCGAGC+AGG | - | chr3_2:51962532-51962551 | Msa0410290:intron | 50.0% | |
| AATTTCGAGCAGGATCTGGG+TGG | - | chr3_2:51962542-51962561 | Msa0410290:intron | 50.0% | |
| TACCCTGACGTAGGGATTTG+AGG | - | chr3_2:51962714-51962733 | Msa0410290:five_prime_UTR | 50.0% | |
| CATACCAATGCACGCCTCTC+AGG | + | chr3_2:51958560-51958579 | None:intergenic | 55.0% | |
| CGGCTTGCAAGTGCTATCGA+TGG | + | chr3_2:51959130-51959149 | None:intergenic | 55.0% | |
| TCGATAGCACTTGCAAGCCG+AGG | - | chr3_2:51959130-51959149 | Msa0410290:CDS | 55.0% | |
| CGATAGCACTTGCAAGCCGA+GGG | - | chr3_2:51959131-51959150 | Msa0410290:CDS | 55.0% | |
| CACACACAACCCACTTGGGT+TGG | - | chr3_2:51960269-51960288 | Msa0410290:intron | 55.0% | |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | - | chr3_2:51960283-51960302 | Msa0410290:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | - | chr3_2:51960288-51960307 | Msa0410290:intron | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | - | chr3_2:51960289-51960308 | Msa0410290:intron | 55.0% |
| AGACCCAAGCCAATACCACC+AGG | + | chr3_2:51960295-51960314 | None:intergenic | 55.0% | |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | - | chr3_2:51960295-51960314 | Msa0410290:intron | 55.0% |
| ! | CTCTCTGGTGCCAATTTGGG+TGG | - | chr3_2:51960352-51960371 | Msa0410290:intron | 55.0% |
| GTGTCTGTGTGAGGGCAGAT+TGG | + | chr3_2:51960653-51960672 | None:intergenic | 55.0% | |
| GTGTCTGTGTGAGGGCAGAT+TGG | + | chr3_2:51960653-51960672 | None:intergenic | 55.0% | |
| ! | AGGCGTTGCCTGTTGCATTG+AGG | + | chr3_2:51960967-51960986 | None:intergenic | 55.0% |
| ACAGGCAACGCCTTCCACTT+CGG | - | chr3_2:51960974-51960993 | Msa0410290:CDS | 55.0% | |
| GATACCTCAGCCGAAGTGGA+AGG | + | chr3_2:51960987-51961006 | None:intergenic | 55.0% | |
| GTCTCCCCGTGTAATATCCC+TGG | - | chr3_2:51961150-51961169 | Msa0410290:intron | 55.0% | |
| TCCCCGTGTAATATCCCTGG+CGG | - | chr3_2:51961153-51961172 | Msa0410290:intron | 55.0% | |
| ACCGCCAGGGATATTACACG+GGG | + | chr3_2:51961157-51961176 | None:intergenic | 55.0% | |
| GAAACAGACCTGATGCAGGC+AGG | + | chr3_2:51961628-51961647 | None:intergenic | 55.0% | |
| ! | GTTGCATTGATCCCTGGCTG+CGG | - | chr3_2:51962494-51962513 | Msa0410290:intron | 55.0% |
| GGATCTGGGTGGAATGACAG+TGG | - | chr3_2:51962553-51962572 | Msa0410290:intron | 55.0% | |
| ! | TTGCAGCTCTGGCTGGTGCT+TGG | - | chr3_2:51958977-51958996 | Msa0410290:intron | 60.0% |
| GGCTGCTGCTGCATGAGCTT+GGG | + | chr3_2:51959065-51959084 | None:intergenic | 60.0% | |
| TGGCTGCTGCTGCATGAGCT+TGG | + | chr3_2:51959066-51959085 | None:intergenic | 60.0% | |
| TGTGTGGCCAAGAAGGCCAC+TGG | + | chr3_2:51959086-51959105 | None:intergenic | 60.0% | |
| GCAGGGTCTCAGACTTCAGC+TGG | - | chr3_2:51959159-51959178 | Msa0410290:intron | 60.0% | |
| !! | ACAACCCACTTGGGTTGGCC+TGG | - | chr3_2:51960274-51960293 | Msa0410290:intron | 60.0% |
| ACCACCAGGCCAACCCAAGT+GGG | + | chr3_2:51960281-51960300 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | + | chr3_2:51960282-51960301 | None:intergenic | 60.0% | |
| TCGAACCTGAGACCTTGCGG+AGG | + | chr3_2:51960330-51960349 | None:intergenic | 60.0% | |
| AACGCCTTCCACTTCGGCTG+AGG | - | chr3_2:51960980-51960999 | Msa0410290:CDS | 60.0% | |
| AGCACTTCCCTGTACCGCCA+GGG | + | chr3_2:51961170-51961189 | None:intergenic | 60.0% | |
| AAGCACTTCCCTGTACCGCC+AGG | + | chr3_2:51961171-51961190 | None:intergenic | 60.0% | |
| ! | TAGCTTGCCCTGCCTGCATC+AGG | - | chr3_2:51961617-51961636 | Msa0410290:exon | 60.0% |
| ATCCCTGGCTGCGGCAACAA+GGG | - | chr3_2:51962503-51962522 | Msa0410290:intron | 60.0% | |
| GCTCATGCAGCAGCAGCCAG+TGG | - | chr3_2:51959067-51959086 | Msa0410290:intron | 65.0% | |
| GCAGCAGCCAGTGGCCTTCT+TGG | - | chr3_2:51959076-51959095 | Msa0410290:intron | 65.0% | |
| TGAGACCCTGCAGACGCCCT+CGG | + | chr3_2:51959150-51959169 | None:intergenic | 65.0% | |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | - | chr3_2:51960277-51960296 | Msa0410290:intron | 65.0% |
| ! | TGGGAGTGTGCTCCTCCGCA+AGG | - | chr3_2:51960315-51960334 | Msa0410290:intron | 65.0% |
| GTGCTCCTCCGCAAGGTCTC+AGG | - | chr3_2:51960322-51960341 | Msa0410290:intron | 65.0% | |
| GATCCCTGGCTGCGGCAACA+AGG | - | chr3_2:51962502-51962521 | Msa0410290:intron | 65.0% | |
| GTCCCTTGTTGCCGCAGCCA+GGG | + | chr3_2:51962508-51962527 | None:intergenic | 65.0% | |
| AGTCCCTTGTTGCCGCAGCC+AGG | + | chr3_2:51962509-51962528 | None:intergenic | 65.0% | |
| !! | TGCAAGCCGAGGGCGTCTGC+AGG | - | chr3_2:51959141-51959160 | Msa0410290:intron | 70.0% |
| !! | GCAAGCCGAGGGCGTCTGCA+GGG | - | chr3_2:51959142-51959161 | Msa0410290:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 51957216 | 51962899 | 51957216 | ID=Msa0410290;Name=Msa0410290 |
| chr3_2 | mRNA | 51957216 | 51962899 | 51957216 | ID=Msa0410290-mRNA-1;Parent=Msa0410290;Name=Msa0410290-mRNA-1;_AED=0.19;_eAED=0.19;_QI=289|0.77|0.9|1|0.88|0.8|10|296|304 |
| chr3_2 | exon | 51957216 | 51957631 | 51957216 | ID=Msa0410290-mRNA-1:exon:10240;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51958477 | 51958602 | 51958477 | ID=Msa0410290-mRNA-1:exon:10239;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51958703 | 51958795 | 51958703 | ID=Msa0410290-mRNA-1:exon:10238;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51959114 | 51959159 | 51959114 | ID=Msa0410290-mRNA-1:exon:10237;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51960625 | 51960739 | 51960625 | ID=Msa0410290-mRNA-1:exon:10236;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51960904 | 51961132 | 51960904 | ID=Msa0410290-mRNA-1:exon:10235;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51961237 | 51961289 | 51961237 | ID=Msa0410290-mRNA-1:exon:10234;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51961396 | 51961450 | 51961396 | ID=Msa0410290-mRNA-1:exon:10233;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51961541 | 51961695 | 51961541 | ID=Msa0410290-mRNA-1:exon:10232;Parent=Msa0410290-mRNA-1 |
| chr3_2 | exon | 51962688 | 51962899 | 51962688 | ID=Msa0410290-mRNA-1:exon:10231;Parent=Msa0410290-mRNA-1 |
| chr3_2 | five_prime_UTR | 51962688 | 51962899 | 51962688 | ID=Msa0410290-mRNA-1:five_prime_utr;Parent=Msa0410290-mRNA-1 |
| chr3_2 | five_prime_UTR | 51961619 | 51961695 | 51961619 | ID=Msa0410290-mRNA-1:five_prime_utr;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51961541 | 51961618 | 51961541 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51961396 | 51961450 | 51961396 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51961237 | 51961289 | 51961237 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51960904 | 51961132 | 51960904 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51960625 | 51960739 | 51960625 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51959114 | 51959159 | 51959114 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51958703 | 51958795 | 51958703 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51958477 | 51958602 | 51958477 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | CDS | 51957512 | 51957631 | 51957512 | ID=Msa0410290-mRNA-1:cds;Parent=Msa0410290-mRNA-1 |
| chr3_2 | three_prime_UTR | 51957216 | 51957511 | 51957216 | ID=Msa0410290-mRNA-1:three_prime_utr;Parent=Msa0410290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
