Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085100 | KEH29011.1 | 48.592 | 142 | 34 | 4 | 2 | 104 | 1123 | 1264 | 1.72e-29 | 122 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085100 | A0A072UHU5 | 48.592 | 142 | 34 | 4 | 2 | 104 | 1123 | 1264 | 8.22e-30 | 122 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1085100 | Msa1324780 | 0.803166 | 3.968120e-49 | -8.615850e-47 |
| Msa1085100 | Msa1423990 | 0.811472 | 6.883811e-51 | -8.615850e-47 |
| Msa0273570 | Msa1085100 | 0.800271 | 1.558783e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1085100 | MtrunA17_Chr4g0009141 | 67.391 | 46 | 15 | 0 | 3 | 48 | 1658 | 1703 | 2.10e-14 | 67.4 |
| Msa1085100 | MtrunA17_Chr4g0007531 | 65.909 | 44 | 15 | 0 | 6 | 49 | 131 | 174 | 1.52e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTGATCTCGCGGACTTTC+TGG | 0.050188 | 7_2:-85556724 | Msa1085100:CDS |
| GGCTTCTTCCTTTCTTAAAA+TGG | 0.198150 | 7_2:+85556663 | None:intergenic |
| GTTGTCCCCTTGAGACTTAC+AGG | 0.265063 | 7_2:+85555014 | None:intergenic |
| GACTGGTTGGCATTCTGATT+TGG | 0.295846 | 7_2:-85556697 | Msa1085100:CDS |
| TATGTTATTACCTTGTAAAA+AGG | 0.308687 | 7_2:+85556637 | None:intergenic |
| TGTTAAAATGTGACTTCAAC+AGG | 0.331543 | 7_2:+85554970 | None:intergenic |
| GGTATATGTAAGAGTGATCT+TGG | 0.354956 | 7_2:+85555095 | None:intergenic |
| ATGTGGGTTTATTAGAGATA+TGG | 0.376425 | 7_2:-85556785 | Msa1085100:intron |
| TAAGGCCAGACAATGAAGTT+TGG | 0.378549 | 7_2:+85555073 | None:intergenic |
| TCCACGATATGCTGCCTTTG+CGG | 0.414296 | 7_2:+85555050 | None:intergenic |
| TATACCCAAACTTCATTGTC+TGG | 0.439597 | 7_2:-85555078 | Msa1085100:CDS |
| AAGGCCAGACAATGAAGTTT+GGG | 0.445961 | 7_2:+85555074 | None:intergenic |
| CTTCAACAGGTTTATTAATG+TGG | 0.466599 | 7_2:+85554983 | None:intergenic |
| ACGAACAAGGGAAGGAAGCC+TGG | 0.495203 | 7_2:+85556751 | None:intergenic |
| GCGGACTTTCTGGTTCAGAC+TGG | 0.499426 | 7_2:-85556714 | Msa1085100:CDS |
| ACTTTCTGGTTCAGACTGGT+TGG | 0.500891 | 7_2:-85556710 | Msa1085100:CDS |
| GATATGCTGCCTTTGCGGTA+AGG | 0.529418 | 7_2:+85555055 | None:intergenic |
| TGGGTTTATTAGAGATATGG+TGG | 0.539872 | 7_2:-85556782 | Msa1085100:intron |
| TTCTTCCTTTCTTAAAATGG+CGG | 0.543419 | 7_2:+85556666 | None:intergenic |
| TGACTTCCTGTAAGTCTCAA+GGG | 0.546234 | 7_2:-85555020 | Msa1085100:CDS |
| AGATCAGAACAGCACGAACA+AGG | 0.548129 | 7_2:+85556738 | None:intergenic |
| ATTGTCTGGCCTTACCGCAA+AGG | 0.554708 | 7_2:-85555064 | Msa1085100:CDS |
| GATATGGTGGAGTCTTCACC+AGG | 0.566535 | 7_2:-85556769 | Msa1085100:CDS |
| GATCAGAACAGCACGAACAA+GGG | 0.568961 | 7_2:+85556739 | None:intergenic |
| ATGTTGTAGGTTCAGCTGAA+AGG | 0.571309 | 7_2:-85555122 | Msa1085100:intron |
| ATGACTTCCTGTAAGTCTCA+AGG | 0.577109 | 7_2:-85555021 | Msa1085100:CDS |
| AGAACAGCACGAACAAGGGA+AGG | 0.580585 | 7_2:+85556743 | None:intergenic |
| ACCGCAAAGGCAGCATATCG+TGG | 0.614192 | 7_2:-85555051 | Msa1085100:CDS |
| TTCGTGCTGTTCTGATCTCG+CGG | 0.630748 | 7_2:-85556733 | Msa1085100:CDS |
| GACTTCCTGTAAGTCTCAAG+GGG | 0.631701 | 7_2:-85555019 | Msa1085100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTTATATGATTCAAAATAT+TGG | + | chr7_2:85555350-85555369 | None:intergenic | 15.0% |
| !! | TCTTATATGATTCAAAATAT+TGG | + | chr7_2:85555350-85555369 | None:intergenic | 15.0% |
| !! | TATGTTATTACCTTGTAAAA+AGG | + | chr7_2:85555123-85555142 | None:intergenic | 20.0% |
| !!! | TTTTAATCTAAAAGATTGAG+AGG | - | chr7_2:85555213-85555232 | Msa1085100:intron | 20.0% |
| !! | TTTAATCTAAAAGATTGAGA+GGG | - | chr7_2:85555214-85555233 | Msa1085100:intron | 20.0% |
| !!! | ATTTTTTTGGTTGAGATAAA+TGG | - | chr7_2:85555268-85555287 | Msa1085100:intron | 20.0% |
| !! | TATGATTCAAAATATTGGAA+GGG | + | chr7_2:85555345-85555364 | None:intergenic | 20.0% |
| !! | ATATGATTCAAAATATTGGA+AGG | + | chr7_2:85555346-85555365 | None:intergenic | 20.0% |
| !!! | ACAAATGACTATTTTGATAA+AGG | - | chr7_2:85555535-85555554 | Msa1085100:intron | 20.0% |
| !!! | TTTGAGAATTGAAATTTTTC+AGG | - | chr7_2:85555632-85555651 | Msa1085100:intron | 20.0% |
| !!! | TTGAGAATTGAAATTTTTCA+GGG | - | chr7_2:85555633-85555652 | Msa1085100:intron | 20.0% |
| !!! | GTAAGTACTTTAGAATTAAA+CGG | + | chr7_2:85556201-85556220 | None:intergenic | 20.0% |
| !! | TATGTTATTACCTTGTAAAA+AGG | + | chr7_2:85555123-85555142 | None:intergenic | 20.0% |
| !!! | TTTTAATCTAAAAGATTGAG+AGG | - | chr7_2:85555213-85555232 | Msa1085100:intron | 20.0% |
| !! | TTTAATCTAAAAGATTGAGA+GGG | - | chr7_2:85555214-85555233 | Msa1085100:intron | 20.0% |
| !!! | ATTTTTTTGGTTGAGATAAA+TGG | - | chr7_2:85555268-85555287 | Msa1085100:intron | 20.0% |
| !! | TATGATTCAAAATATTGGAA+GGG | + | chr7_2:85555345-85555364 | None:intergenic | 20.0% |
| !! | ATATGATTCAAAATATTGGA+AGG | + | chr7_2:85555346-85555365 | None:intergenic | 20.0% |
| !!! | ACAAATGACTATTTTGATAA+AGG | - | chr7_2:85555535-85555554 | Msa1085100:intron | 20.0% |
| !!! | TTTGAGAATTGAAATTTTTC+AGG | - | chr7_2:85555632-85555651 | Msa1085100:intron | 20.0% |
| !!! | TTGAGAATTGAAATTTTTCA+GGG | - | chr7_2:85555633-85555652 | Msa1085100:intron | 20.0% |
| !!! | GTAAGTACTTTAGAATTAAA+CGG | + | chr7_2:85556201-85556220 | None:intergenic | 20.0% |
| ! | TATTACCTTGTAAAAAGGTT+CGG | + | chr7_2:85555118-85555137 | None:intergenic | 25.0% |
| !!! | GGATTTGATAGGTATTTTTT+TGG | - | chr7_2:85555255-85555274 | Msa1085100:intron | 25.0% |
| !!! | TTGAAATTTTTCAGGGAATT+AGG | - | chr7_2:85555640-85555659 | Msa1085100:intron | 25.0% |
| !! | ACTCATTTTACAGACATAAA+AGG | + | chr7_2:85555813-85555832 | None:intergenic | 25.0% |
| ! | AAAGCTTATTACTTACAAGA+AGG | - | chr7_2:85555905-85555924 | Msa1085100:intron | 25.0% |
| !!! | CTGTCTTATTTACTCATTTT+AGG | + | chr7_2:85555991-85556010 | None:intergenic | 25.0% |
| ! | AAAATACTTGTTCATTTGGT+GGG | + | chr7_2:85556046-85556065 | None:intergenic | 25.0% |
| ! | AAAAATACTTGTTCATTTGG+TGG | + | chr7_2:85556047-85556066 | None:intergenic | 25.0% |
| !! | ACCAAATGAACAAGTATTTT+TGG | - | chr7_2:85556046-85556065 | Msa1085100:intron | 25.0% |
| !! | CCAAATGAACAAGTATTTTT+GGG | - | chr7_2:85556047-85556066 | Msa1085100:intron | 25.0% |
| !!! | CAAATGAACAAGTATTTTTG+GGG | - | chr7_2:85556048-85556067 | Msa1085100:intron | 25.0% |
| ! | TTCACTCATTTATCAGTATT+TGG | + | chr7_2:85556177-85556196 | None:intergenic | 25.0% |
| ! | ACATTCTTTCCTTAAATTTG+AGG | - | chr7_2:85556602-85556621 | Msa1085100:intron | 25.0% |
| ! | CATTCTTTCCTTAAATTTGA+GGG | - | chr7_2:85556603-85556622 | Msa1085100:intron | 25.0% |
| ! | TATTACCTTGTAAAAAGGTT+CGG | + | chr7_2:85555118-85555137 | None:intergenic | 25.0% |
| !!! | GGATTTGATAGGTATTTTTT+TGG | - | chr7_2:85555255-85555274 | Msa1085100:intron | 25.0% |
| !!! | TTGAAATTTTTCAGGGAATT+AGG | - | chr7_2:85555640-85555659 | Msa1085100:intron | 25.0% |
| !! | ACTCATTTTACAGACATAAA+AGG | + | chr7_2:85555813-85555832 | None:intergenic | 25.0% |
| ! | AAAGCTTATTACTTACAAGA+AGG | - | chr7_2:85555905-85555924 | Msa1085100:intron | 25.0% |
| !!! | CTGTCTTATTTACTCATTTT+AGG | + | chr7_2:85555991-85556010 | None:intergenic | 25.0% |
| ! | AAAATACTTGTTCATTTGGT+GGG | + | chr7_2:85556046-85556065 | None:intergenic | 25.0% |
| ! | AAAAATACTTGTTCATTTGG+TGG | + | chr7_2:85556047-85556066 | None:intergenic | 25.0% |
| !! | ACCAAATGAACAAGTATTTT+TGG | - | chr7_2:85556046-85556065 | Msa1085100:intron | 25.0% |
| !! | CCAAATGAACAAGTATTTTT+GGG | - | chr7_2:85556047-85556066 | Msa1085100:intron | 25.0% |
| !!! | CAAATGAACAAGTATTTTTG+GGG | - | chr7_2:85556048-85556067 | Msa1085100:intron | 25.0% |
| ! | TTCACTCATTTATCAGTATT+TGG | + | chr7_2:85556177-85556196 | None:intergenic | 25.0% |
| ! | ACATTCTTTCCTTAAATTTG+AGG | - | chr7_2:85556602-85556621 | Msa1085100:intron | 25.0% |
| ! | CATTCTTTCCTTAAATTTGA+GGG | - | chr7_2:85556603-85556622 | Msa1085100:intron | 25.0% |
| ATGTGGGTTTATTAGAGATA+TGG | - | chr7_2:85554972-85554991 | Msa1085100:CDS | 30.0% | |
| TTCTTCCTTTCTTAAAATGG+CGG | + | chr7_2:85555094-85555113 | None:intergenic | 30.0% | |
| AGAATCCATAGTTATTGTTG+AGG | - | chr7_2:85555178-85555197 | Msa1085100:intron | 30.0% | |
| ATAGTTATTGTTGAGGTTGA+GGG | - | chr7_2:85555185-85555204 | Msa1085100:intron | 30.0% | |
| AACATCTTGAAGCAAAATGA+AGG | + | chr7_2:85555404-85555423 | None:intergenic | 30.0% | |
| TACACACTCAAAAAGATGTT+CGG | + | chr7_2:85555584-85555603 | None:intergenic | 30.0% | |
| CTGATACTATGATGAAATGT+AGG | - | chr7_2:85555844-85555863 | Msa1085100:intron | 30.0% | |
| !!! | TTTTAGGACTCATAACATGT+TGG | + | chr7_2:85555975-85555994 | None:intergenic | 30.0% |
| CCCAAAAATACTTGTTCATT+TGG | + | chr7_2:85556050-85556069 | None:intergenic | 30.0% | |
| GGACTGAATTCATAAACAAT+TGG | - | chr7_2:85556085-85556104 | Msa1085100:intron | 30.0% | |
| !! | ATATTTGCAGGTATTGGATA+TGG | + | chr7_2:85556433-85556452 | None:intergenic | 30.0% |
| CAACAAATATTTGCAGGTAT+TGG | + | chr7_2:85556439-85556458 | None:intergenic | 30.0% | |
| ! | TAGGATGGACAAATATTTTC+AGG | + | chr7_2:85556490-85556509 | None:intergenic | 30.0% |
| GAAAATATTTGTCCATCCTA+AGG | - | chr7_2:85556490-85556509 | Msa1085100:intron | 30.0% | |
| AAAGAATGTTCGACGAAAAA+TGG | + | chr7_2:85556591-85556610 | None:intergenic | 30.0% | |
| TTCCTTAAATTTGAGGGAAT+CGG | - | chr7_2:85556609-85556628 | Msa1085100:intron | 30.0% | |
| CTTCAACAGGTTTATTAATG+TGG | + | chr7_2:85556777-85556796 | None:intergenic | 30.0% | |
| ATGTGGGTTTATTAGAGATA+TGG | - | chr7_2:85554972-85554991 | Msa1085100:CDS | 30.0% | |
| TTCTTCCTTTCTTAAAATGG+CGG | + | chr7_2:85555094-85555113 | None:intergenic | 30.0% | |
| AGAATCCATAGTTATTGTTG+AGG | - | chr7_2:85555178-85555197 | Msa1085100:intron | 30.0% | |
| ATAGTTATTGTTGAGGTTGA+GGG | - | chr7_2:85555185-85555204 | Msa1085100:intron | 30.0% | |
| AACATCTTGAAGCAAAATGA+AGG | + | chr7_2:85555404-85555423 | None:intergenic | 30.0% | |
| TACACACTCAAAAAGATGTT+CGG | + | chr7_2:85555584-85555603 | None:intergenic | 30.0% | |
| CTGATACTATGATGAAATGT+AGG | - | chr7_2:85555844-85555863 | Msa1085100:intron | 30.0% | |
| !!! | TTTTAGGACTCATAACATGT+TGG | + | chr7_2:85555975-85555994 | None:intergenic | 30.0% |
| CCCAAAAATACTTGTTCATT+TGG | + | chr7_2:85556050-85556069 | None:intergenic | 30.0% | |
| GGACTGAATTCATAAACAAT+TGG | - | chr7_2:85556085-85556104 | Msa1085100:intron | 30.0% | |
| !! | ATATTTGCAGGTATTGGATA+TGG | + | chr7_2:85556433-85556452 | None:intergenic | 30.0% |
| CAACAAATATTTGCAGGTAT+TGG | + | chr7_2:85556439-85556458 | None:intergenic | 30.0% | |
| ! | TAGGATGGACAAATATTTTC+AGG | + | chr7_2:85556490-85556509 | None:intergenic | 30.0% |
| GAAAATATTTGTCCATCCTA+AGG | - | chr7_2:85556490-85556509 | Msa1085100:intron | 30.0% | |
| AAAGAATGTTCGACGAAAAA+TGG | + | chr7_2:85556591-85556610 | None:intergenic | 30.0% | |
| TTCCTTAAATTTGAGGGAAT+CGG | - | chr7_2:85556609-85556628 | Msa1085100:intron | 30.0% | |
| CTTCAACAGGTTTATTAATG+TGG | + | chr7_2:85556777-85556796 | None:intergenic | 30.0% | |
| TGGGTTTATTAGAGATATGG+TGG | - | chr7_2:85554975-85554994 | Msa1085100:CDS | 35.0% | |
| GGCTTCTTCCTTTCTTAAAA+TGG | + | chr7_2:85555097-85555116 | None:intergenic | 35.0% | |
| CTCAACCTCAACAATAACTA+TGG | + | chr7_2:85555186-85555205 | None:intergenic | 35.0% | |
| CATAGTTATTGTTGAGGTTG+AGG | - | chr7_2:85555184-85555203 | Msa1085100:intron | 35.0% | |
| ! | GGAATTTAGTTCACAAGCTA+AGG | - | chr7_2:85555289-85555308 | Msa1085100:intron | 35.0% |
| AGCAAAATGAAGGAAAGAGT+GGG | + | chr7_2:85555394-85555413 | None:intergenic | 35.0% | |
| AAGCAAAATGAAGGAAAGAG+TGG | + | chr7_2:85555395-85555414 | None:intergenic | 35.0% | |
| TCAGGGAATTAGGATATCAT+TGG | - | chr7_2:85555650-85555669 | Msa1085100:intron | 35.0% | |
| GATCGATCAAATTACGATAG+AGG | + | chr7_2:85555791-85555810 | None:intergenic | 35.0% | |
| TTAAGCTTGGGAGTAATTGT+AGG | - | chr7_2:85555949-85555968 | Msa1085100:intron | 35.0% | |
| GTTTATGAATTCAGTCCAAG+AGG | + | chr7_2:85556082-85556101 | None:intergenic | 35.0% | |
| GTTAGTGAAAGAGCTATGTA+TGG | - | chr7_2:85556128-85556147 | Msa1085100:intron | 35.0% | |
| ! | ATTTTACCATTGTGTTGCAG+TGG | - | chr7_2:85556370-85556389 | Msa1085100:intron | 35.0% |
| GATGTGCAACAAATATTTGC+AGG | + | chr7_2:85556445-85556464 | None:intergenic | 35.0% | |
| !! | ATCACATTGAGTCATTTTCG+AGG | - | chr7_2:85556462-85556481 | Msa1085100:intron | 35.0% |
| !! | TCACATTGAGTCATTTTCGA+GGG | - | chr7_2:85556463-85556482 | Msa1085100:intron | 35.0% |
| AGCATGTTGCAGTTTAGTTA+TGG | - | chr7_2:85556523-85556542 | Msa1085100:intron | 35.0% | |
| GTTGCAGTTTAGTTATGGAT+TGG | - | chr7_2:85556528-85556547 | Msa1085100:intron | 35.0% | |
| GGTATATGTAAGAGTGATCT+TGG | + | chr7_2:85556665-85556684 | None:intergenic | 35.0% | |
| TATACCCAAACTTCATTGTC+TGG | - | chr7_2:85556679-85556698 | Msa1085100:CDS | 35.0% | |
| TGGGTTTATTAGAGATATGG+TGG | - | chr7_2:85554975-85554994 | Msa1085100:CDS | 35.0% | |
| GGCTTCTTCCTTTCTTAAAA+TGG | + | chr7_2:85555097-85555116 | None:intergenic | 35.0% | |
| CTCAACCTCAACAATAACTA+TGG | + | chr7_2:85555186-85555205 | None:intergenic | 35.0% | |
| CATAGTTATTGTTGAGGTTG+AGG | - | chr7_2:85555184-85555203 | Msa1085100:intron | 35.0% | |
| ! | GGAATTTAGTTCACAAGCTA+AGG | - | chr7_2:85555289-85555308 | Msa1085100:intron | 35.0% |
| AGCAAAATGAAGGAAAGAGT+GGG | + | chr7_2:85555394-85555413 | None:intergenic | 35.0% | |
| AAGCAAAATGAAGGAAAGAG+TGG | + | chr7_2:85555395-85555414 | None:intergenic | 35.0% | |
| TCAGGGAATTAGGATATCAT+TGG | - | chr7_2:85555650-85555669 | Msa1085100:intron | 35.0% | |
| GATCGATCAAATTACGATAG+AGG | + | chr7_2:85555791-85555810 | None:intergenic | 35.0% | |
| TTAAGCTTGGGAGTAATTGT+AGG | - | chr7_2:85555949-85555968 | Msa1085100:intron | 35.0% | |
| GTTTATGAATTCAGTCCAAG+AGG | + | chr7_2:85556082-85556101 | None:intergenic | 35.0% | |
| GTTAGTGAAAGAGCTATGTA+TGG | - | chr7_2:85556128-85556147 | Msa1085100:intron | 35.0% | |
| ! | ATTTTACCATTGTGTTGCAG+TGG | - | chr7_2:85556370-85556389 | Msa1085100:intron | 35.0% |
| GATGTGCAACAAATATTTGC+AGG | + | chr7_2:85556445-85556464 | None:intergenic | 35.0% | |
| !! | ATCACATTGAGTCATTTTCG+AGG | - | chr7_2:85556462-85556481 | Msa1085100:intron | 35.0% |
| !! | TCACATTGAGTCATTTTCGA+GGG | - | chr7_2:85556463-85556482 | Msa1085100:intron | 35.0% |
| AGCATGTTGCAGTTTAGTTA+TGG | - | chr7_2:85556523-85556542 | Msa1085100:intron | 35.0% | |
| GTTGCAGTTTAGTTATGGAT+TGG | - | chr7_2:85556528-85556547 | Msa1085100:intron | 35.0% | |
| GGTATATGTAAGAGTGATCT+TGG | + | chr7_2:85556665-85556684 | None:intergenic | 35.0% | |
| TATACCCAAACTTCATTGTC+TGG | - | chr7_2:85556679-85556698 | Msa1085100:CDS | 35.0% | |
| !! | ACTTGCCGCCATTTTAAGAA+AGG | - | chr7_2:85555086-85555105 | Msa1085100:CDS | 40.0% |
| ! | AGAAGCCGAACCTTTTTACA+AGG | - | chr7_2:85555110-85555129 | Msa1085100:CDS | 40.0% |
| CTAAAAGATTGAGAGGGAAG+AGG | - | chr7_2:85555220-85555239 | Msa1085100:intron | 40.0% | |
| TTAGTTCACAAGCTAAGGAG+AGG | - | chr7_2:85555294-85555313 | Msa1085100:intron | 40.0% | |
| ! | TAAGGAGAGGATTTGGAATG+CGG | - | chr7_2:85555307-85555326 | Msa1085100:intron | 40.0% |
| GCAAAATGAAGGAAAGAGTG+GGG | + | chr7_2:85555393-85555412 | None:intergenic | 40.0% | |
| GCTTCAAGATGTTCACTTTG+AGG | - | chr7_2:85555411-85555430 | Msa1085100:intron | 40.0% | |
| ! | TCACTTTGAGGACACTCTAT+AGG | - | chr7_2:85555423-85555442 | Msa1085100:intron | 40.0% |
| AAATGTAGGCATACACGAAG+AGG | - | chr7_2:85555858-85555877 | Msa1085100:intron | 40.0% | |
| AACTCTCTGACTGATACTGT+TGG | + | chr7_2:85555931-85555950 | None:intergenic | 40.0% | |
| ATCAGTCAGAGAGTTAAGCT+TGG | - | chr7_2:85555936-85555955 | Msa1085100:intron | 40.0% | |
| TCAGTCAGAGAGTTAAGCTT+GGG | - | chr7_2:85555937-85555956 | Msa1085100:intron | 40.0% | |
| GTAAATAAGACAGCTCGATG+TGG | - | chr7_2:85555998-85556017 | Msa1085100:intron | 40.0% | |
| TGGTCAGTTTCACTGAGATT+TGG | - | chr7_2:85556105-85556124 | Msa1085100:intron | 40.0% | |
| GGTCAGTTTCACTGAGATTT+GGG | - | chr7_2:85556106-85556125 | Msa1085100:intron | 40.0% | |
| TGCTCTACCTTAATCAAACC+CGG | + | chr7_2:85556154-85556173 | None:intergenic | 40.0% | |
| ! | GTCCATCCTAAGGTTGATTT+AGG | - | chr7_2:85556500-85556519 | Msa1085100:intron | 40.0% |
| CTCCTAAATCAACCTTAGGA+TGG | + | chr7_2:85556505-85556524 | None:intergenic | 40.0% | |
| CATGCTCCTAAATCAACCTT+AGG | + | chr7_2:85556509-85556528 | None:intergenic | 40.0% | |
| !! | CACCGATTCCCTCAAATTTA+AGG | + | chr7_2:85556614-85556633 | None:intergenic | 40.0% |
| CTTAAATTTGAGGGAATCGG+TGG | - | chr7_2:85556612-85556631 | Msa1085100:intron | 40.0% | |
| ATGTTGTAGGTTCAGCTGAA+AGG | - | chr7_2:85556635-85556654 | Msa1085100:intron | 40.0% | |
| AAGGCCAGACAATGAAGTTT+GGG | + | chr7_2:85556686-85556705 | None:intergenic | 40.0% | |
| TAAGGCCAGACAATGAAGTT+TGG | + | chr7_2:85556687-85556706 | None:intergenic | 40.0% | |
| ATGACTTCCTGTAAGTCTCA+AGG | - | chr7_2:85556736-85556755 | Msa1085100:CDS | 40.0% | |
| TGACTTCCTGTAAGTCTCAA+GGG | - | chr7_2:85556737-85556756 | Msa1085100:CDS | 40.0% | |
| !! | ACTTGCCGCCATTTTAAGAA+AGG | - | chr7_2:85555086-85555105 | Msa1085100:CDS | 40.0% |
| ! | AGAAGCCGAACCTTTTTACA+AGG | - | chr7_2:85555110-85555129 | Msa1085100:CDS | 40.0% |
| CTAAAAGATTGAGAGGGAAG+AGG | - | chr7_2:85555220-85555239 | Msa1085100:intron | 40.0% | |
| TTAGTTCACAAGCTAAGGAG+AGG | - | chr7_2:85555294-85555313 | Msa1085100:intron | 40.0% | |
| ! | TAAGGAGAGGATTTGGAATG+CGG | - | chr7_2:85555307-85555326 | Msa1085100:intron | 40.0% |
| GCAAAATGAAGGAAAGAGTG+GGG | + | chr7_2:85555393-85555412 | None:intergenic | 40.0% | |
| GCTTCAAGATGTTCACTTTG+AGG | - | chr7_2:85555411-85555430 | Msa1085100:intron | 40.0% | |
| ! | TCACTTTGAGGACACTCTAT+AGG | - | chr7_2:85555423-85555442 | Msa1085100:intron | 40.0% |
| AAATGTAGGCATACACGAAG+AGG | - | chr7_2:85555858-85555877 | Msa1085100:intron | 40.0% | |
| AACTCTCTGACTGATACTGT+TGG | + | chr7_2:85555931-85555950 | None:intergenic | 40.0% | |
| ATCAGTCAGAGAGTTAAGCT+TGG | - | chr7_2:85555936-85555955 | Msa1085100:intron | 40.0% | |
| TCAGTCAGAGAGTTAAGCTT+GGG | - | chr7_2:85555937-85555956 | Msa1085100:intron | 40.0% | |
| GTAAATAAGACAGCTCGATG+TGG | - | chr7_2:85555998-85556017 | Msa1085100:intron | 40.0% | |
| TGGTCAGTTTCACTGAGATT+TGG | - | chr7_2:85556105-85556124 | Msa1085100:intron | 40.0% | |
| GGTCAGTTTCACTGAGATTT+GGG | - | chr7_2:85556106-85556125 | Msa1085100:intron | 40.0% | |
| TGCTCTACCTTAATCAAACC+CGG | + | chr7_2:85556154-85556173 | None:intergenic | 40.0% | |
| ! | GTCCATCCTAAGGTTGATTT+AGG | - | chr7_2:85556500-85556519 | Msa1085100:intron | 40.0% |
| CTCCTAAATCAACCTTAGGA+TGG | + | chr7_2:85556505-85556524 | None:intergenic | 40.0% | |
| CATGCTCCTAAATCAACCTT+AGG | + | chr7_2:85556509-85556528 | None:intergenic | 40.0% | |
| !! | CACCGATTCCCTCAAATTTA+AGG | + | chr7_2:85556614-85556633 | None:intergenic | 40.0% |
| CTTAAATTTGAGGGAATCGG+TGG | - | chr7_2:85556612-85556631 | Msa1085100:intron | 40.0% | |
| ATGTTGTAGGTTCAGCTGAA+AGG | - | chr7_2:85556635-85556654 | Msa1085100:intron | 40.0% | |
| AAGGCCAGACAATGAAGTTT+GGG | + | chr7_2:85556686-85556705 | None:intergenic | 40.0% | |
| TAAGGCCAGACAATGAAGTT+TGG | + | chr7_2:85556687-85556706 | None:intergenic | 40.0% | |
| ATGACTTCCTGTAAGTCTCA+AGG | - | chr7_2:85556736-85556755 | Msa1085100:CDS | 40.0% | |
| TGACTTCCTGTAAGTCTCAA+GGG | - | chr7_2:85556737-85556756 | Msa1085100:CDS | 40.0% | |
| GATCAGAACAGCACGAACAA+GGG | + | chr7_2:85555021-85555040 | None:intergenic | 45.0% | |
| AGATCAGAACAGCACGAACA+AGG | + | chr7_2:85555022-85555041 | None:intergenic | 45.0% | |
| !! | ACTTTCTGGTTCAGACTGGT+TGG | - | chr7_2:85555047-85555066 | Msa1085100:CDS | 45.0% |
| ! | GACTGGTTGGCATTCTGATT+TGG | - | chr7_2:85555060-85555079 | Msa1085100:CDS | 45.0% |
| AGATTGAGAGGGAAGAGGAA+AGG | - | chr7_2:85555225-85555244 | Msa1085100:intron | 45.0% | |
| AAGGAGTGGAGGGATTTGAT+AGG | - | chr7_2:85555244-85555263 | Msa1085100:intron | 45.0% | |
| CACAAGCTAAGGAGAGGATT+TGG | - | chr7_2:85555300-85555319 | Msa1085100:intron | 45.0% | |
| AGGACACTCTATAGGCAAAC+AGG | - | chr7_2:85555431-85555450 | Msa1085100:intron | 45.0% | |
| ATAGGCAAACAGGCAAACAC+TGG | - | chr7_2:85555441-85555460 | Msa1085100:intron | 45.0% | |
| TAGGCAAACAGGCAAACACT+GGG | - | chr7_2:85555442-85555461 | Msa1085100:intron | 45.0% | |
| ! | GAGTGTGTAGCTTGTGAAAC+TGG | - | chr7_2:85555595-85555614 | Msa1085100:intron | 45.0% |
| GGCATACACGAAGAGGTAAA+TGG | - | chr7_2:85555865-85555884 | Msa1085100:intron | 45.0% | |
| GTGAAAGAGCTATGTATGGC+CGG | - | chr7_2:85556132-85556151 | Msa1085100:intron | 45.0% | |
| TGAAAGAGCTATGTATGGCC+GGG | - | chr7_2:85556133-85556152 | Msa1085100:intron | 45.0% | |
| TGTATGGCCGGGTTTGATTA+AGG | - | chr7_2:85556144-85556163 | Msa1085100:intron | 45.0% | |
| TTACCATTGTGTTGCAGTGG+CGG | - | chr7_2:85556373-85556392 | Msa1085100:intron | 45.0% | |
| GACTTCCTGTAAGTCTCAAG+GGG | - | chr7_2:85556738-85556757 | Msa1085100:CDS | 45.0% | |
| GATCAGAACAGCACGAACAA+GGG | + | chr7_2:85555021-85555040 | None:intergenic | 45.0% | |
| AGATCAGAACAGCACGAACA+AGG | + | chr7_2:85555022-85555041 | None:intergenic | 45.0% | |
| !! | ACTTTCTGGTTCAGACTGGT+TGG | - | chr7_2:85555047-85555066 | Msa1085100:CDS | 45.0% |
| ! | GACTGGTTGGCATTCTGATT+TGG | - | chr7_2:85555060-85555079 | Msa1085100:CDS | 45.0% |
| AGATTGAGAGGGAAGAGGAA+AGG | - | chr7_2:85555225-85555244 | Msa1085100:intron | 45.0% | |
| AAGGAGTGGAGGGATTTGAT+AGG | - | chr7_2:85555244-85555263 | Msa1085100:intron | 45.0% | |
| CACAAGCTAAGGAGAGGATT+TGG | - | chr7_2:85555300-85555319 | Msa1085100:intron | 45.0% | |
| AGGACACTCTATAGGCAAAC+AGG | - | chr7_2:85555431-85555450 | Msa1085100:intron | 45.0% | |
| ATAGGCAAACAGGCAAACAC+TGG | - | chr7_2:85555441-85555460 | Msa1085100:intron | 45.0% | |
| TAGGCAAACAGGCAAACACT+GGG | - | chr7_2:85555442-85555461 | Msa1085100:intron | 45.0% | |
| ! | GAGTGTGTAGCTTGTGAAAC+TGG | - | chr7_2:85555595-85555614 | Msa1085100:intron | 45.0% |
| GGCATACACGAAGAGGTAAA+TGG | - | chr7_2:85555865-85555884 | Msa1085100:intron | 45.0% | |
| GTGAAAGAGCTATGTATGGC+CGG | - | chr7_2:85556132-85556151 | Msa1085100:intron | 45.0% | |
| TGAAAGAGCTATGTATGGCC+GGG | - | chr7_2:85556133-85556152 | Msa1085100:intron | 45.0% | |
| TGTATGGCCGGGTTTGATTA+AGG | - | chr7_2:85556144-85556163 | Msa1085100:intron | 45.0% | |
| TTACCATTGTGTTGCAGTGG+CGG | - | chr7_2:85556373-85556392 | Msa1085100:intron | 45.0% | |
| GACTTCCTGTAAGTCTCAAG+GGG | - | chr7_2:85556738-85556757 | Msa1085100:CDS | 45.0% | |
| ! | GATATGGTGGAGTCTTCACC+AGG | - | chr7_2:85554988-85555007 | Msa1085100:CDS | 50.0% |
| AGAACAGCACGAACAAGGGA+AGG | + | chr7_2:85555017-85555036 | None:intergenic | 50.0% | |
| ! | TTCGTGCTGTTCTGATCTCG+CGG | - | chr7_2:85555024-85555043 | Msa1085100:CDS | 50.0% |
| TTCTGATCTCGCGGACTTTC+TGG | - | chr7_2:85555033-85555052 | Msa1085100:CDS | 50.0% | |
| AGAAAAACCAAGCCCACCAG+CGG | + | chr7_2:85555473-85555492 | None:intergenic | 50.0% | |
| CCAACTCCATGTACCTGTAG+CGG | - | chr7_2:85556403-85556422 | Msa1085100:intron | 50.0% | |
| TGGATATGGACATCCGCTAC+AGG | + | chr7_2:85556419-85556438 | None:intergenic | 50.0% | |
| AGGGAATCGGTGGATGTTGT+AGG | - | chr7_2:85556622-85556641 | Msa1085100:intron | 50.0% | |
| !! | ATTGTCTGGCCTTACCGCAA+AGG | - | chr7_2:85556693-85556712 | Msa1085100:CDS | 50.0% |
| GATATGCTGCCTTTGCGGTA+AGG | + | chr7_2:85556705-85556724 | None:intergenic | 50.0% | |
| TCCACGATATGCTGCCTTTG+CGG | + | chr7_2:85556710-85556729 | None:intergenic | 50.0% | |
| GTTGTCCCCTTGAGACTTAC+AGG | + | chr7_2:85556746-85556765 | None:intergenic | 50.0% | |
| ! | GATATGGTGGAGTCTTCACC+AGG | - | chr7_2:85554988-85555007 | Msa1085100:CDS | 50.0% |
| AGAACAGCACGAACAAGGGA+AGG | + | chr7_2:85555017-85555036 | None:intergenic | 50.0% | |
| ! | TTCGTGCTGTTCTGATCTCG+CGG | - | chr7_2:85555024-85555043 | Msa1085100:CDS | 50.0% |
| TTCTGATCTCGCGGACTTTC+TGG | - | chr7_2:85555033-85555052 | Msa1085100:CDS | 50.0% | |
| AGAAAAACCAAGCCCACCAG+CGG | + | chr7_2:85555473-85555492 | None:intergenic | 50.0% | |
| CCAACTCCATGTACCTGTAG+CGG | - | chr7_2:85556403-85556422 | Msa1085100:intron | 50.0% | |
| TGGATATGGACATCCGCTAC+AGG | + | chr7_2:85556419-85556438 | None:intergenic | 50.0% | |
| AGGGAATCGGTGGATGTTGT+AGG | - | chr7_2:85556622-85556641 | Msa1085100:intron | 50.0% | |
| !! | ATTGTCTGGCCTTACCGCAA+AGG | - | chr7_2:85556693-85556712 | Msa1085100:CDS | 50.0% |
| GATATGCTGCCTTTGCGGTA+AGG | + | chr7_2:85556705-85556724 | None:intergenic | 50.0% | |
| TCCACGATATGCTGCCTTTG+CGG | + | chr7_2:85556710-85556729 | None:intergenic | 50.0% | |
| GTTGTCCCCTTGAGACTTAC+AGG | + | chr7_2:85556746-85556765 | None:intergenic | 50.0% | |
| ACGAACAAGGGAAGGAAGCC+TGG | + | chr7_2:85555009-85555028 | None:intergenic | 55.0% | |
| !! | GCGGACTTTCTGGTTCAGAC+TGG | - | chr7_2:85555043-85555062 | Msa1085100:CDS | 55.0% |
| GAGAGGGAAGAGGAAAGGAG+TGG | - | chr7_2:85555230-85555249 | Msa1085100:intron | 55.0% | |
| AGGGAAGAGGAAAGGAGTGG+AGG | - | chr7_2:85555233-85555252 | Msa1085100:intron | 55.0% | |
| GGGAAGAGGAAAGGAGTGGA+GGG | - | chr7_2:85555234-85555253 | Msa1085100:intron | 55.0% | |
| ! | TTTGGGGTGCGCTTTCCTCT+TGG | - | chr7_2:85556064-85556083 | Msa1085100:intron | 55.0% |
| CCGCTACAGGTACATGGAGT+TGG | + | chr7_2:85556406-85556425 | None:intergenic | 55.0% | |
| GGACATCCGCTACAGGTACA+TGG | + | chr7_2:85556412-85556431 | None:intergenic | 55.0% | |
| ACCGCAAAGGCAGCATATCG+TGG | - | chr7_2:85556706-85556725 | Msa1085100:CDS | 55.0% | |
| ACGAACAAGGGAAGGAAGCC+TGG | + | chr7_2:85555009-85555028 | None:intergenic | 55.0% | |
| !! | GCGGACTTTCTGGTTCAGAC+TGG | - | chr7_2:85555043-85555062 | Msa1085100:CDS | 55.0% |
| GAGAGGGAAGAGGAAAGGAG+TGG | - | chr7_2:85555230-85555249 | Msa1085100:intron | 55.0% | |
| AGGGAAGAGGAAAGGAGTGG+AGG | - | chr7_2:85555233-85555252 | Msa1085100:intron | 55.0% | |
| GGGAAGAGGAAAGGAGTGGA+GGG | - | chr7_2:85555234-85555253 | Msa1085100:intron | 55.0% | |
| ! | TTTGGGGTGCGCTTTCCTCT+TGG | - | chr7_2:85556064-85556083 | Msa1085100:intron | 55.0% |
| CCGCTACAGGTACATGGAGT+TGG | + | chr7_2:85556406-85556425 | None:intergenic | 55.0% | |
| GGACATCCGCTACAGGTACA+TGG | + | chr7_2:85556412-85556431 | None:intergenic | 55.0% | |
| ACCGCAAAGGCAGCATATCG+TGG | - | chr7_2:85556706-85556725 | Msa1085100:CDS | 55.0% | |
| CCTCCGCCACTGCAACACAA+TGG | + | chr7_2:85556379-85556398 | None:intergenic | 60.0% | |
| CCATTGTGTTGCAGTGGCGG+AGG | - | chr7_2:85556376-85556395 | Msa1085100:intron | 60.0% | |
| CCTCCGCCACTGCAACACAA+TGG | + | chr7_2:85556379-85556398 | None:intergenic | 60.0% | |
| CCATTGTGTTGCAGTGGCGG+AGG | - | chr7_2:85556376-85556395 | Msa1085100:intron | 60.0% | |
| CAAACACTGGGCAGTGCCGC+TGG | - | chr7_2:85555454-85555473 | Msa1085100:intron | 65.0% | |
| CAAACACTGGGCAGTGCCGC+TGG | - | chr7_2:85555454-85555473 | Msa1085100:intron | 65.0% | |
| ! | ACACTGGGCAGTGCCGCTGG+TGG | - | chr7_2:85555457-85555476 | Msa1085100:intron | 70.0% |
| ! | CACTGGGCAGTGCCGCTGGT+GGG | - | chr7_2:85555458-85555477 | Msa1085100:intron | 70.0% |
| ! | ACACTGGGCAGTGCCGCTGG+TGG | - | chr7_2:85555457-85555476 | Msa1085100:intron | 70.0% |
| ! | CACTGGGCAGTGCCGCTGGT+GGG | - | chr7_2:85555458-85555477 | Msa1085100:intron | 70.0% |
| !! | GGCAGTGCCGCTGGTGGGCT+TGG | - | chr7_2:85555463-85555482 | Msa1085100:intron | 75.0% |
| !! | GGCAGTGCCGCTGGTGGGCT+TGG | - | chr7_2:85555463-85555482 | Msa1085100:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 85554972 | 85556807 | 85554972 | ID=Msa1085100;Name=Msa1085100 |
| chr7_2 | mRNA | 85554972 | 85556807 | 85554972 | ID=Msa1085100-mRNA-1;Parent=Msa1085100;Name=Msa1085100-mRNA-1;_AED=0.48;_eAED=0.75;_QI=0|0|0|1|1|1|3|0|104 |
| chr7_2 | exon | 85556802 | 85556807 | 85556802 | ID=Msa1085100-mRNA-1:exon:23151;Parent=Msa1085100-mRNA-1 |
| chr7_2 | exon | 85556648 | 85556792 | 85556648 | ID=Msa1085100-mRNA-1:exon:23150;Parent=Msa1085100-mRNA-1 |
| chr7_2 | exon | 85554972 | 85555135 | 85554972 | ID=Msa1085100-mRNA-1:exon:23149;Parent=Msa1085100-mRNA-1 |
| chr7_2 | CDS | 85556802 | 85556807 | 85556802 | ID=Msa1085100-mRNA-1:cds;Parent=Msa1085100-mRNA-1 |
| chr7_2 | CDS | 85556648 | 85556792 | 85556648 | ID=Msa1085100-mRNA-1:cds;Parent=Msa1085100-mRNA-1 |
| chr7_2 | CDS | 85554972 | 85555135 | 85554972 | ID=Msa1085100-mRNA-1:cds;Parent=Msa1085100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
