AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1089950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089950 MtrunA17_Chr4g0000521 92.096 291 6 2 1 274 1 291 2.40e-169 470
Msa1089950 MtrunA17_Chr8g0341911 33.607 244 147 4 35 267 20 259 2.04e-38 135
Msa1089950 MtrunA17_Chr5g0401861 35.878 262 143 9 27 267 71 328 2.32e-35 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1089950 AT3G21215.3 62.701 311 76 3 1 271 1 311 1.18e-121 350
Msa1089950 AT3G21215.2 62.866 307 74 3 1 267 1 307 5.61e-119 344
Msa1089950 AT3G21215.1 62.866 307 74 3 1 267 1 307 5.61e-119 344
Msa1089950 AT3G21215.4 62.866 307 74 3 1 267 1 307 5.61e-119 344
Msa1089950 AT2G42240.4 37.500 256 143 6 24 271 38 284 2.14e-42 147
Msa1089950 AT2G42240.1 36.905 252 142 6 24 267 38 280 7.41e-41 143
Msa1089950 AT2G42240.3 36.653 251 142 6 24 266 38 279 8.39e-40 140
Msa1089950 AT3G13700.2 32.353 272 163 6 7 267 18 279 1.10e-34 127
Msa1089950 AT3G13700.1 30.104 289 163 6 7 266 18 296 7.85e-30 114

Find 198 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTATACATTGGTATTT+AGG 0.097707 7_3:+3561896 Msa1089950:three_prime_UTR
CCTTGCAACACCCTGTTTAT+TGG 0.156343 7_3:+3560615 Msa1089950:CDS
CCAATGACTCTATAAGTCTT+TGG 0.208218 7_3:-3565134 None:intergenic
ATCGGTGATTAGAAAATTAA+TGG 0.209037 7_3:+3562166 Msa1089950:three_prime_UTR
AGAAAATTAATGGTTGAAAT+TGG 0.211039 7_3:+3562176 Msa1089950:three_prime_UTR
CTCATACTTTGCATTCAATT+TGG 0.213545 7_3:+3561389 Msa1089950:three_prime_UTR
CTTGCAACACCCTGTTTATT+GGG 0.228971 7_3:+3560616 Msa1089950:CDS
TTGAAGTTAAAACTATTTAA+AGG 0.234294 7_3:+3562368 Msa1089950:three_prime_UTR
TCTCTCTCTTTAACATCTTC+TGG 0.236900 7_3:-3558304 None:intergenic
TGGTATCTGCTTCCAACTTT+AGG 0.243384 7_3:+3561940 Msa1089950:three_prime_UTR
AGGTAAACTACCATCAAATT+TGG 0.247222 7_3:+3562516 Msa1089950:three_prime_UTR
TGGTTTCTCCATTCTGTTGT+AGG 0.248963 7_3:+3561426 Msa1089950:three_prime_UTR
AACCAATATTACTACATTAT+AGG 0.249534 7_3:+3561617 Msa1089950:three_prime_UTR
CCGGATTTACTTCAAAAGTT+AGG 0.257743 7_3:+3558044 Msa1089950:five_prime_UTR
TGGAAGACCCGTTATAAATA+TGG 0.265459 7_3:-3558284 None:intergenic
CGGCGGCGGGAGGCCATTGC+TGG 0.265928 7_3:-3558133 None:intergenic
TCTGTATACATTGGTATTTA+GGG 0.267237 7_3:+3561897 Msa1089950:three_prime_UTR
TGCTACTGCCATATTGTTGC+AGG 0.267857 7_3:+3562472 Msa1089950:three_prime_UTR
GGAGAAGTTACAACCTTATA+TGG 0.269549 7_3:+3565047 Msa1089950:three_prime_UTR
CAAATTTAGTTTATGTGAAC+TGG 0.274557 7_3:+3562109 Msa1089950:three_prime_UTR
CAATGACTCTATAAGTCTTT+GGG 0.281588 7_3:-3565133 None:intergenic
AAAGCCATTCTCACCTGAAT+TGG 0.289777 7_3:-3559557 None:intergenic
AACTAAGTATTGGTAAATTC+AGG 0.292403 7_3:+3561286 Msa1089950:three_prime_UTR
ACACTGCCACTCTCCATATA+AGG 0.293581 7_3:-3565060 None:intergenic
TGAAGCAGCCATTGAATTAT+AGG 0.297235 7_3:+3562563 Msa1089950:three_prime_UTR
AAACACCTATGAAACTAATC+TGG 0.306027 7_3:-3561797 None:intergenic
CACCCTGTTTATTGGGAACT+TGG 0.308237 7_3:+3560623 Msa1089950:CDS
TAGCAGTTATGTTCCAATTC+AGG 0.309823 7_3:+3559544 Msa1089950:CDS
TTAAGCAAATGAAGATTATA+AGG 0.318083 7_3:+3560808 Msa1089950:CDS
GTACTTTAGGCGATAAAATA+TGG 0.318453 7_3:+3562136 Msa1089950:three_prime_UTR
AACTAAGGTTTGTGTTCTAT+TGG 0.321468 7_3:+3565026 Msa1089950:three_prime_UTR
CTTCCACAAAAGGGGCTAAT+AGG 0.324527 7_3:-3565099 None:intergenic
GAAGGAATAGCGGTGGGTTG+AGG 0.329734 7_3:-3558167 None:intergenic
ATCCTATAATGTAGTAATAT+TGG 0.336175 7_3:-3561619 None:intergenic
TTTGTTTGAAATGTGCTTTA+TGG 0.336993 7_3:+3561862 Msa1089950:three_prime_UTR
ATGAGAGTGGAAAGGGTAGA+TGG 0.339157 7_3:-3562046 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.340502 7_3:-3561333 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.341755 7_3:-3561282 None:intergenic
CTCCCAAGTTCCCAATAAAC+AGG 0.342043 7_3:-3560626 None:intergenic
GGAGGAGGAGCGGCGGCGGG+AGG 0.344741 7_3:-3558143 None:intergenic
TTCTCTATTAACCCAGCATC+TGG 0.347556 7_3:+3561114 Msa1089950:three_prime_UTR
GGTGCTGTTATCCCAAGTTC+TGG 0.347584 7_3:+3561001 Msa1089950:CDS
GACAAAGCTTCCTTTCATAA+TGG 0.348216 7_3:+3562437 Msa1089950:three_prime_UTR
AATATCAGACATGCATTTAT+CGG 0.357969 7_3:+3561758 Msa1089950:three_prime_UTR
TATCAGAAATTCGTAGTCAT+AGG 0.363049 7_3:-3562589 None:intergenic
CCAAAGACTTATAGAGTCAT+TGG 0.366331 7_3:+3565134 Msa1089950:three_prime_UTR
GACGTTCCAACCAAATTTGA+TGG 0.366859 7_3:-3562526 None:intergenic
ATAGCGGTGGGTTGAGGAGG+AGG 0.368075 7_3:-3558161 None:intergenic
AGCAGATACCAATGCCTGTT+TGG 0.374337 7_3:-3561928 None:intergenic
CTAAGTATTGGTAAATTCAA+TGG 0.374747 7_3:+3561339 Msa1089950:three_prime_UTR
ATATATTGTCTGATTTATAC+AGG 0.374769 7_3:+3562404 Msa1089950:three_prime_UTR
GGTTCCCAGATTAGTTTCAT+AGG 0.376752 7_3:+3561792 Msa1089950:three_prime_UTR
AGGAGGAGGAGGAGCGGCGG+CGG 0.380056 7_3:-3558147 None:intergenic
ATCCCAAGTTCTGGTTCAAT+TGG 0.381310 7_3:+3561010 Msa1089950:CDS
GGAGGCCATTGCTGGTGGTA+AGG 0.381880 7_3:-3558125 None:intergenic
TAGTTTCATAGGTGTTTAGA+TGG 0.388607 7_3:+3561803 Msa1089950:three_prime_UTR
ACCTACCCTATGGCTGTTCC+TGG 0.389519 7_3:+3561524 Msa1089950:three_prime_UTR
CAATATGGCAGTAGCAGAAA+TGG 0.389651 7_3:-3562465 None:intergenic
TGCTGCTAAAGATATTCTTC+AGG 0.389765 7_3:+3558435 Msa1089950:CDS
GGCATTGGTACTTGTGCAAC+AGG 0.393304 7_3:-3559500 None:intergenic
TTACTTCAAAAGTTAGGGTT+AGG 0.393352 7_3:+3558050 Msa1089950:five_prime_UTR
TAAGAAAATGCTTCCACAAA+AGG 0.398319 7_3:-3565109 None:intergenic
ATAAAATATGGTGTTATAAT+CGG 0.398468 7_3:+3562148 Msa1089950:three_prime_UTR
TGGCATCATATACATTCATT+TGG 0.402096 7_3:+3561723 Msa1089950:three_prime_UTR
CGGATTTACTTCAAAAGTTA+GGG 0.402484 7_3:+3558045 Msa1089950:five_prime_UTR
ATGCCAATTGAACCAGAACT+TGG 0.417682 7_3:-3561013 None:intergenic
GACAAAATACAAGTTATATT+CGG 0.418851 7_3:-3562257 None:intergenic
TAGCTGTTCCTTTAGAACTA+AGG 0.428248 7_3:+3565011 Msa1089950:three_prime_UTR
CCAATGCCAAAACTAAGTAT+TGG 0.428339 7_3:+3561276 Msa1089950:three_prime_UTR
ATTAATGCTGTGTGATCAAA+TGG 0.429021 7_3:-3562335 None:intergenic
GGTTCGAACCATATTTATAA+CGG 0.432197 7_3:+3558276 Msa1089950:intron
TTTCAAAGCCGAAAAGCCTA+TGG 0.434501 7_3:+3558378 Msa1089950:CDS
CAGTCATAAACCCCAGATGC+TGG 0.438126 7_3:-3561126 None:intergenic
AAACTATTTAAAGGATTCTC+CGG 0.439864 7_3:+3562377 Msa1089950:three_prime_UTR
AAGAAAATGCTTCCACAAAA+GGG 0.443157 7_3:-3565108 None:intergenic
GGAATAGCGGTGGGTTGAGG+AGG 0.444814 7_3:-3558164 None:intergenic
TCAATGCCAAAACTAAGTAT+TGG 0.446988 7_3:+3561327 Msa1089950:three_prime_UTR
TAGATGGCGTTATCATTTGT+AGG 0.452371 7_3:+3561819 Msa1089950:three_prime_UTR
ACCCTGTTTATTGGGAACTT+GGG 0.453911 7_3:+3560624 Msa1089950:CDS
GTTCGAACCATATTTATAAC+GGG 0.455076 7_3:+3558277 Msa1089950:CDS
TTAGGGATGCTTATCCAAAC+AGG 0.455990 7_3:+3561914 Msa1089950:three_prime_UTR
GAGGCCATTGCTGGTGGTAA+GGG 0.456679 7_3:-3558124 None:intergenic
AACACAAACCTTAGTTCTAA+AGG 0.459146 7_3:-3565019 None:intergenic
GGATCATACGGAGGAGGAGG+TGG 0.460265 7_3:-3559464 None:intergenic
GCCATTGCTGGTGGTAAGGG+TGG 0.461353 7_3:-3558121 None:intergenic
GGAGGAGGAGGAGCGGCGGC+GGG 0.463504 7_3:-3558146 None:intergenic
CATTGCTACTGGAGCTCCAT+TGG 0.465712 7_3:-3561549 None:intergenic
AACCTTTGTCGATGGTTACC+TGG 0.465772 7_3:+3558334 Msa1089950:CDS
TCATACGGAGGAGGAGGTGG+TGG 0.465780 7_3:-3559461 None:intergenic
CAGCATCTGGGGTTTATGAC+TGG 0.465788 7_3:+3561127 Msa1089950:three_prime_UTR
AATTTGGTTGGAACGTCTGT+TGG 0.467457 7_3:+3562532 Msa1089950:three_prime_UTR
GGAACAGCTAGTGGCGTTTG+AGG 0.470913 7_3:-3564998 None:intergenic
GCTGGGGATTATAATCATAC+TGG 0.472133 7_3:+3559071 Msa1089950:CDS
ATCTTCATTTGCTTAAAGCC+AGG 0.474830 7_3:-3560801 None:intergenic
AAACTACCATCAAATTTGGT+TGG 0.478622 7_3:+3562520 Msa1089950:three_prime_UTR
ATGACTTATCAGTAGCTTGA+AGG 0.479145 7_3:+3561569 Msa1089950:three_prime_UTR
AGTAAACGGTTACGAACAGC+TGG 0.481756 7_3:+3559053 Msa1089950:CDS
GCAACAGGATAGCCTGCATA+TGG 0.482662 7_3:-3559485 None:intergenic
GTGGTAAGGGTGGATGCCGT+TGG 0.484200 7_3:-3558111 None:intergenic
ATGGCTGTTCCTGGTGCCAA+TGG 0.485478 7_3:+3561533 Msa1089950:three_prime_UTR
CATTTATCGGCAGCATGTGT+TGG 0.485795 7_3:+3561771 Msa1089950:three_prime_UTR
TACTGATAAGTCATTGCTAC+TGG 0.489556 7_3:-3561560 None:intergenic
CCGATGTGAAACGACATTAG+AGG 0.498201 7_3:+3564937 Msa1089950:three_prime_UTR
ACTAAGTATTGGTAAATTCA+GGG 0.498341 7_3:+3561287 Msa1089950:three_prime_UTR
ACAACACATGAACCTAAAGT+TGG 0.498571 7_3:-3561952 None:intergenic
TCTCTATTAACCCAGCATCT+GGG 0.500261 7_3:+3561115 Msa1089950:three_prime_UTR
GCAAATGAAGATTATAAGGC+AGG 0.500307 7_3:+3560812 Msa1089950:CDS
CAAAGACTTATAGAGTCATT+GGG 0.502530 7_3:+3565135 Msa1089950:three_prime_UTR
TTCTCAAGTTCAAGTTCAAG+TGG 0.502586 7_3:-3558001 None:intergenic
AATGATAATGAGAGTGGAAA+GGG 0.506100 7_3:-3562053 None:intergenic
ATGCTTATCCAAACAGGCAT+TGG 0.507705 7_3:+3561920 Msa1089950:three_prime_UTR
GGCGATGACTTGATAATCAA+TGG 0.515826 7_3:-3561666 None:intergenic
AAATTTAGTTTATGTGAACT+GGG 0.516314 7_3:+3562110 Msa1089950:three_prime_UTR
ATTTGGTATAAAACTGCTTG+TGG 0.517696 7_3:+3561406 Msa1089950:three_prime_UTR
AAATGTGCACCACAATCTGC+AGG 0.517804 7_3:+3560979 Msa1089950:CDS
GCTTTGTAATGCAGACAACC+TGG 0.519392 7_3:+3560783 Msa1089950:intron
AGTACTACCTCTTCGGAAGA+AGG 0.521807 7_3:-3558191 None:intergenic
CTCTATTAACCCAGCATCTG+GGG 0.521963 7_3:+3561116 Msa1089950:three_prime_UTR
GCGGTGGGTTGAGGAGGAGG+AGG 0.522344 7_3:-3558158 None:intergenic
CGGCGGGAGGCCATTGCTGG+TGG 0.524594 7_3:-3558130 None:intergenic
ATCAGAAATTCGTAGTCATA+GGG 0.525268 7_3:-3562588 None:intergenic
GGTGAGATAGACACAGGAGC+AGG 0.526097 7_3:-3559521 None:intergenic
TCTCCATTCTGTTGTAGGCA+AGG 0.527422 7_3:+3561431 Msa1089950:three_prime_UTR
TGAAGGAAGTACTACCTCTT+CGG 0.528081 7_3:-3558198 None:intergenic
TTGGCACCAGGAACAGCCAT+AGG 0.533854 7_3:-3561530 None:intergenic
TGACTTATCAGTAGCTTGAA+GGG 0.534994 7_3:+3561570 Msa1089950:three_prime_UTR
CAAATGGAGTCATGAATGCC+AGG 0.537483 7_3:-3562319 None:intergenic
GTCTTCTAAAGTACACTCCC+AGG 0.538418 7_3:+3562277 Msa1089950:three_prime_UTR
TCCACCCTTACCACCAGCAA+TGG 0.538447 7_3:+3558120 Msa1089950:CDS
AACTTCAAAACCTTTGTCGA+TGG 0.541598 7_3:+3558326 Msa1089950:CDS
ATAGGGCACCTATAATTCAA+TGG 0.545368 7_3:-3562571 None:intergenic
TGAAGAACAGATTTAGCCTC+GGG 0.546026 7_3:-3558472 None:intergenic
TCCTTCTCCTTCTTCCGAAG+AGG 0.546449 7_3:+3558184 Msa1089950:CDS
AAGCTTCCTTTCATAATGGA+AGG 0.546475 7_3:+3562441 Msa1089950:three_prime_UTR
TAGCCTGCATATGGATCATA+CGG 0.548541 7_3:-3559476 None:intergenic
TAAACAGGGTGTTGCAAGGA+GGG 0.548723 7_3:-3560611 None:intergenic
AACATGAGCAGTGATGATAA+TGG 0.551137 7_3:-3561687 None:intergenic
AGCATCTGGGGTTTATGACT+GGG 0.552350 7_3:+3561128 Msa1089950:three_prime_UTR
AACTGAGAAGCTTCAAAACC+AGG 0.556577 7_3:-3558352 None:intergenic
TTCAAAGCCGAAAAGCCTAT+GGG 0.558458 7_3:+3558379 Msa1089950:CDS
CCTCCGTATGATCCATATGC+AGG 0.559113 7_3:+3559473 Msa1089950:CDS
ATTCCTTGCCTACAACAGAA+TGG 0.560024 7_3:-3561434 None:intergenic
CATTAGAGGCTATTAAAGAA+AGG 0.560405 7_3:+3564951 Msa1089950:three_prime_UTR
ATCTGTTCTTCATACTGAGA+TGG 0.561919 7_3:+3558483 Msa1089950:CDS
GAAGGAGAAGGAATAGCGGT+GGG 0.564113 7_3:-3558173 None:intergenic
AAAAGATGGAACCTACCCTA+TGG 0.564455 7_3:+3561514 Msa1089950:three_prime_UTR
AACACCTATGAAACTAATCT+GGG 0.566767 7_3:-3561796 None:intergenic
GATTCATTCATGGCAGCCAA+CGG 0.570409 7_3:+3558095 Msa1089950:exon
TAACAGCACCCTGCAGATTG+TGG 0.570755 7_3:-3560988 None:intergenic
CATTAATGAGGAAGAAGTGA+GGG 0.575202 7_3:+3560653 Msa1089950:CDS
ATGAAGAACAGATTTAGCCT+CGG 0.577945 7_3:-3558473 None:intergenic
AATGGACCTTCCATTATGAA+AGG 0.578687 7_3:-3562447 None:intergenic
AGTCATAAACCCCAGATGCT+GGG 0.579970 7_3:-3561125 None:intergenic
TATGGATCATACGGAGGAGG+AGG 0.580137 7_3:-3559467 None:intergenic
ATAGACACAGGAGCAGGCAT+TGG 0.580929 7_3:-3559515 None:intergenic
CAATGATAATGAGAGTGGAA+AGG 0.592019 7_3:-3562054 None:intergenic
AATGACAATGATAATGAGAG+TGG 0.596480 7_3:-3562059 None:intergenic
AATCAGACAATATATAACTC+CGG 0.598244 7_3:-3562396 None:intergenic
TGAATTGGAACATAACTGCT+AGG 0.602093 7_3:-3559542 None:intergenic
ACCTCTTCGGAAGAAGGAGA+AGG 0.602484 7_3:-3558185 None:intergenic
ACAGCTAGTGGCGTTTGAGG+TGG 0.602799 7_3:-3564995 None:intergenic
ATTTAGTTTATGTGAACTGG+GGG 0.602858 7_3:+3562112 Msa1089950:three_prime_UTR
CCAATAAACAGGGTGTTGCA+AGG 0.603873 7_3:-3560615 None:intergenic
ACTGGAGCTCCATTGGCACC+AGG 0.605650 7_3:-3561542 None:intergenic
CTTGGGAGAGAACATTAATG+AGG 0.606113 7_3:+3560641 Msa1089950:CDS
GCATATGGATCATACGGAGG+AGG 0.606969 7_3:-3559470 None:intergenic
TGAAGATTATAAGGCAGGAG+AGG 0.609049 7_3:+3560817 Msa1089950:CDS
TGCCAATTGAACCAGAACTT+GGG 0.610282 7_3:-3561012 None:intergenic
AGTTCTAAAGGAACAGCTAG+TGG 0.610897 7_3:-3565007 None:intergenic
AATTTAGTTTATGTGAACTG+GGG 0.610923 7_3:+3562111 Msa1089950:three_prime_UTR
GACTTATCAGTAGCTTGAAG+GGG 0.615446 7_3:+3561571 Msa1089950:three_prime_UTR
TGGCACCAGGAACAGCCATA+GGG 0.617677 7_3:-3561529 None:intergenic
AGAAAATGCTTCCACAAAAG+GGG 0.620217 7_3:-3565107 None:intergenic
TTGAAGAGAGCAAAACCCAT+AGG 0.622823 7_3:-3558394 None:intergenic
TTAGCAGCAATAGCTTGATG+AGG 0.625830 7_3:-3558421 None:intergenic
TATATTGTCTGATTTATACA+GGG 0.645169 7_3:+3562405 Msa1089950:three_prime_UTR
AATGACTCTATAAGTCTTTG+GGG 0.646712 7_3:-3565132 None:intergenic
ACATTAATGAGGAAGAAGTG+AGG 0.646735 7_3:+3560652 Msa1089950:CDS
AGAAGGAGAAGGAATAGCGG+TGG 0.646815 7_3:-3558174 None:intergenic
AAACAAATGAAAGAAACTCA+CGG 0.653052 7_3:-3561240 None:intergenic
TTACAACCTTATATGGAGAG+TGG 0.656010 7_3:+3565054 Msa1089950:three_prime_UTR
AAATGGAGTCATGAATGCCA+GGG 0.656673 7_3:-3562318 None:intergenic
CCTCTAATGTCGTTTCACAT+CGG 0.664600 7_3:-3564937 None:intergenic
TGTTTAGAGTAAAACGACAC+CGG 0.666550 7_3:+3558025 Msa1089950:five_prime_UTR
AACCAGGTAACCATCGACAA+AGG 0.666576 7_3:-3558336 None:intergenic
TCCCAAGTTCCCAATAAACA+GGG 0.668529 7_3:-3560625 None:intergenic
GTTCTGGTTCAATTGGCATG+CGG 0.674324 7_3:+3561017 Msa1089950:CDS
AATGTGCACCACAATCTGCA+GGG 0.681242 7_3:+3560980 Msa1089950:CDS
GTAAACGGTTACGAACAGCT+GGG 0.684153 7_3:+3559054 Msa1089950:CDS
TAAACGGTTACGAACAGCTG+GGG 0.691927 7_3:+3559055 Msa1089950:CDS
TGGAGTCATGAATGCCAGGG+TGG 0.694151 7_3:-3562315 None:intergenic
CTGCTAGGTGAGATAGACAC+AGG 0.695547 7_3:-3559527 None:intergenic
ATAAACAGGGTGTTGCAAGG+AGG 0.695618 7_3:-3560612 None:intergenic
ACCAGGAACAGCCATAGGGT+AGG 0.709355 7_3:-3561525 None:intergenic
ATTAATGAGGAAGAAGTGAG+GGG 0.716298 7_3:+3560654 Msa1089950:CDS
GGAAGAAGGAGAAGGAATAG+CGG 0.729192 7_3:-3558177 None:intergenic
CCTGCATATGGATCATACGG+AGG 0.734736 7_3:-3559473 None:intergenic
TCATGTTAATGAATGCACAG+TGG 0.853491 7_3:+3561703 Msa1089950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATTTAAGAGTTTA+AGG + chr7_3:3563080-3563099 Msa1089950:intron 10.0%
!!! AATAAGTAAATTTTTTTTGT+AGG + chr7_3:3563140-3563159 Msa1089950:intron 10.0%
!!! ATAAGTAAATTTTTTTTGTA+GGG + chr7_3:3563141-3563160 Msa1089950:intron 10.0%
!! TTAAAAATGCTATTAAAATT+AGG + chr7_3:3563165-3563184 Msa1089950:intron 10.0%
!!! ACATTTTAATATTTAGTTTT+TGG + chr7_3:3563409-3563428 Msa1089950:intron 10.0%
!!! CATTTTAATATTTAGTTTTT+GGG + chr7_3:3563410-3563429 Msa1089950:intron 10.0%
!! TTTAAATTAATAAATTTCTC+CGG - chr7_3:3563981-3564000 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr7_3:3564266-3564285 Msa1089950:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr7_3:3564267-3564286 Msa1089950:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG - chr7_3:3564315-3564334 None:intergenic 10.0%
!!! AAAATGAATAATTTTTCTTA+TGG - chr7_3:3565186-3565205 None:intergenic 10.0%
!!! TCAATTTTTATTCAATTATG+TGG + chr7_3:3558561-3558580 Msa1089950:intron 15.0%
!!! CTTATTTTGATTTTTTTTGT+AGG + chr7_3:3558999-3559018 Msa1089950:intron 15.0%
!! GAAAAAATATGATGTTTAAA+GGG + chr7_3:3560395-3560414 Msa1089950:intron 15.0%
!! TCATTGATAAACAATATTAA+CGG - chr7_3:3560534-3560553 None:intergenic 15.0%
!! ATAAACTAAATTTGAAAAAC+AGG - chr7_3:3562103-3562122 None:intergenic 15.0%
!!! ATAAAATATGGTGTTATAAT+CGG + chr7_3:3562148-3562167 Msa1089950:three_prime_UTR 15.0%
!! TTGAAGTTAAAACTATTTAA+AGG + chr7_3:3562368-3562387 Msa1089950:three_prime_UTR 15.0%
!!! CAAAAAAAACTAACATTTTT+CGG - chr7_3:3562617-3562636 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr7_3:3562758-3562777 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr7_3:3562830-3562849 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+TGG - chr7_3:3562914-3562933 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr7_3:3562949-3562968 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr7_3:3563108-3563127 Msa1089950:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr7_3:3563109-3563128 Msa1089950:intron 15.0%
!! AAAAAAAAAAAATCAACTTG+AGG + chr7_3:3563686-3563705 Msa1089950:intron 15.0%
!! TTCTATAAATTAATAATGTC+AGG + chr7_3:3563954-3563973 Msa1089950:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+TGG - chr7_3:3564381-3564400 None:intergenic 15.0%
!!! AAACTCTTTAATTTAATACT+CGG - chr7_3:3564419-3564438 None:intergenic 15.0%
!!! AATTCAATTATGCTTTTTTC+AGG + chr7_3:3558255-3558274 Msa1089950:intron 20.0%
!!! TTTAAAATAATCACATGTGT+CGG - chr7_3:3558718-3558737 None:intergenic 20.0%
!! TTTAGACTAAATTATGGTAT+TGG + chr7_3:3558845-3558864 Msa1089950:intron 20.0%
!!! TTGATTTTTTTTGTAGGAAT+AGG + chr7_3:3559005-3559024 Msa1089950:intron 20.0%
!! CAAACTTTCAGTTAATAATA+TGG - chr7_3:3559413-3559432 None:intergenic 20.0%
!!! TGAAAGTTTGTTTGTTTTTA+TGG + chr7_3:3559423-3559442 Msa1089950:intron 20.0%
!! GGAAAAAATATGATGTTTAA+AGG + chr7_3:3560394-3560413 Msa1089950:intron 20.0%
!! TTAAGCAAATGAAGATTATA+AGG + chr7_3:3560808-3560827 Msa1089950:CDS 20.0%
!!! TACAATATCCTTTTTTATTG+TGG + chr7_3:3561041-3561060 Msa1089950:CDS 20.0%
!!! TCTTTCATTTGTTTTTTCAA+TGG + chr7_3:3561249-3561268 Msa1089950:three_prime_UTR 20.0%
!!! AATTTACCAATACTTAGTTT+TGG - chr7_3:3561285-3561304 None:intergenic 20.0%
!!! TTTTGGCATTGAAAAATATA+AGG - chr7_3:3561319-3561338 None:intergenic 20.0%
!!! AATTTACCAATACTTAGTTT+TGG - chr7_3:3561285-3561304 None:intergenic 20.0%
!! AACCAATATTACTACATTAT+AGG + chr7_3:3561617-3561636 Msa1089950:three_prime_UTR 20.0%
!! ATCCTATAATGTAGTAATAT+TGG - chr7_3:3561622-3561641 None:intergenic 20.0%
!!! AAATTTAGTTTATGTGAACT+GGG + chr7_3:3562110-3562129 Msa1089950:three_prime_UTR 20.0%
!! AGAAAATTAATGGTTGAAAT+TGG + chr7_3:3562176-3562195 Msa1089950:three_prime_UTR 20.0%
!! GACAAAATACAAGTTATATT+CGG - chr7_3:3562260-3562279 None:intergenic 20.0%
!! ATATATTGTCTGATTTATAC+AGG + chr7_3:3562404-3562423 Msa1089950:three_prime_UTR 20.0%
!! TATATTGTCTGATTTATACA+GGG + chr7_3:3562405-3562424 Msa1089950:three_prime_UTR 20.0%
!!! TTAGTTTTTTTTGCAAGAAT+TGG + chr7_3:3562624-3562643 Msa1089950:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr7_3:3562860-3562879 Msa1089950:intron 20.0%
!! AATGCTATTAAAATTAGGTA+AGG + chr7_3:3563170-3563189 Msa1089950:intron 20.0%
!!! TAATGGGTTAATTATGTTTT+TGG - chr7_3:3563228-3563247 None:intergenic 20.0%
!! CTAATGTAAGATAAAATGTT+GGG - chr7_3:3563613-3563632 None:intergenic 20.0%
!! ACTAATGTAAGATAAAATGT+TGG - chr7_3:3563614-3563633 None:intergenic 20.0%
!!! TTTTATCTTACATTAGTGAA+TGG + chr7_3:3563617-3563636 Msa1089950:intron 20.0%
!! TATATAGTTATATTAGCATG+TGG + chr7_3:3563776-3563795 Msa1089950:intron 20.0%
!! TATGTTATTCTCACTTAATT+AGG + chr7_3:3564835-3564854 Msa1089950:intron 20.0%
!! TAGCCTAAATATATATATGA+TGG + chr7_3:3564876-3564895 Msa1089950:intron 20.0%
!! CAACCATCATATATATATTT+AGG - chr7_3:3564882-3564901 None:intergenic 20.0%
!!! TGTGAATTTTGATTCATTCA+TGG + chr7_3:3558085-3558104 Msa1089950:exon 25.0%
! AATAAATAGAAGAAGAGTGA+AGG - chr7_3:3558218-3558237 None:intergenic 25.0%
! AAAAATCTCTTTGTTAAACG+AGG + chr7_3:3558511-3558530 Msa1089950:CDS 25.0%
!!! TTGCTTTTGATCAAAGTAAA+CGG + chr7_3:3559039-3559058 Msa1089950:CDS 25.0%
! AAAACAATGTTGTCAAATAG+TGG + chr7_3:3559205-3559224 Msa1089950:intron 25.0%
!! GTTTTTATGGTCTAGATATA+TGG + chr7_3:3559436-3559455 Msa1089950:intron 25.0%
!! TTAAACTGTTAATGCTACTT+TGG + chr7_3:3559578-3559597 Msa1089950:intron 25.0%
! AAAGTTGGAGTAATTATTGA+GGG - chr7_3:3559854-3559873 None:intergenic 25.0%
! AAAAGTTGGAGTAATTATTG+AGG - chr7_3:3559855-3559874 None:intergenic 25.0%
! TGTCTTTCTCTAATAAAGTA+AGG + chr7_3:3559905-3559924 Msa1089950:intron 25.0%
! GTCTTTCTCTAATAAAGTAA+GGG + chr7_3:3559906-3559925 Msa1089950:intron 25.0%
! ATCAATTTCTAACAGTTGAA+TGG - chr7_3:3560091-3560110 None:intergenic 25.0%
!!! TCTATTTTAACTACCAAAGA+AGG + chr7_3:3560303-3560322 Msa1089950:intron 25.0%
!!! AACATCATATTTTTTCCAGT+AGG - chr7_3:3560391-3560410 None:intergenic 25.0%
! GATTAATCCAATATATGACA+CGG - chr7_3:3560752-3560771 None:intergenic 25.0%
! ATGAAAAATACATGGTAAGT+TGG - chr7_3:3561206-3561225 None:intergenic 25.0%
! TATCAGTGATGAAAAATACA+TGG - chr7_3:3561214-3561233 None:intergenic 25.0%
! AAACAAATGAAAGAAACTCA+CGG - chr7_3:3561243-3561262 None:intergenic 25.0%
!!! AACTAAGTATTGGTAAATTC+AGG + chr7_3:3561286-3561305 Msa1089950:three_prime_UTR 25.0%
!!! ACTAAGTATTGGTAAATTCA+GGG + chr7_3:3561287-3561306 Msa1089950:three_prime_UTR 25.0%
!!! CTAAGTATTGGTAAATTCAA+TGG + chr7_3:3561339-3561358 Msa1089950:three_prime_UTR 25.0%
! AGATATTCCAAAAATCCATT+TGG + chr7_3:3561485-3561504 Msa1089950:three_prime_UTR 25.0%
!!! TCTTTTTCCAAATGGATTTT+TGG - chr7_3:3561495-3561514 None:intergenic 25.0%
! AATATCAGACATGCATTTAT+CGG + chr7_3:3561758-3561777 Msa1089950:three_prime_UTR 25.0%
!! TTTGTTTGAAATGTGCTTTA+TGG + chr7_3:3561862-3561881 Msa1089950:three_prime_UTR 25.0%
!! TTAGACTTTTCTGTATACAT+TGG + chr7_3:3561888-3561907 Msa1089950:three_prime_UTR 25.0%
! TTCTGTATACATTGGTATTT+AGG + chr7_3:3561896-3561915 Msa1089950:three_prime_UTR 25.0%
! TCTGTATACATTGGTATTTA+GGG + chr7_3:3561897-3561916 Msa1089950:three_prime_UTR 25.0%
!!! TGATGCTTTCTTTATTTTCA+TGG + chr7_3:3561998-3562017 Msa1089950:three_prime_UTR 25.0%
! AACTAAATTTGAAAAACAGG+AGG - chr7_3:3562100-3562119 None:intergenic 25.0%
!! CAAATTTAGTTTATGTGAAC+TGG + chr7_3:3562109-3562128 Msa1089950:three_prime_UTR 25.0%
!! AATTTAGTTTATGTGAACTG+GGG + chr7_3:3562111-3562130 Msa1089950:three_prime_UTR 25.0%
! ATCGGTGATTAGAAAATTAA+TGG + chr7_3:3562166-3562185 Msa1089950:three_prime_UTR 25.0%
! AAACTATTTAAAGGATTCTC+CGG + chr7_3:3562377-3562396 Msa1089950:three_prime_UTR 25.0%
! AATCAGACAATATATAACTC+CGG - chr7_3:3562399-3562418 None:intergenic 25.0%
!!! GAGTGCAAATTTTTTTTGTA+GGG - chr7_3:3562787-3562806 None:intergenic 25.0%
!!! TGAGTGCAAATTTTTTTTGT+AGG - chr7_3:3562788-3562807 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr7_3:3562819-3562838 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr7_3:3562884-3562903 Msa1089950:intron 25.0%
!!! TTTTGCGATATTTTTTTTGG+AGG - chr7_3:3562911-3562930 None:intergenic 25.0%
! TTAACCCATTATAATACACT+AGG + chr7_3:3563237-3563256 Msa1089950:intron 25.0%
! TAACCCATTATAATACACTA+GGG + chr7_3:3563238-3563257 Msa1089950:intron 25.0%
!! AGTTTAAAATCATTGATAGC+AGG - chr7_3:3563327-3563346 None:intergenic 25.0%
! AAACAAGTTAGAACAGTTTA+TGG - chr7_3:3563449-3563468 None:intergenic 25.0%
! TATAACTGCTTATATTGCAT+TGG - chr7_3:3563760-3563779 None:intergenic 25.0%
! TAAATTAATAATGTCAGGAC+CGG + chr7_3:3563959-3563978 Msa1089950:intron 25.0%
! TTGGGACTGAAAATTATAAA+AGG + chr7_3:3564285-3564304 Msa1089950:intron 25.0%
! TAATTTACCCTGATATACAT+GGG - chr7_3:3564623-3564642 None:intergenic 25.0%
!!! TTTTAAGTAAATCTTAGCGA+AGG - chr7_3:3564652-3564671 None:intergenic 25.0%
!!! TCAGTTGAAAGGTTTTTTAT+GGG - chr7_3:3564712-3564731 None:intergenic 25.0%
!!! TTCAGTTGAAAGGTTTTTTA+TGG - chr7_3:3564713-3564732 None:intergenic 25.0%
!! AAAATGTTGATTACCAAAAC+AGG + chr7_3:3564914-3564933 Msa1089950:intron 25.0%
!!! CCTAACTTTTGAAGTAAATC+CGG - chr7_3:3558047-3558066 None:intergenic 30.0%
CGGATTTACTTCAAAAGTTA+GGG + chr7_3:3558045-3558064 Msa1089950:five_prime_UTR 30.0%
TTACTTCAAAAGTTAGGGTT+AGG + chr7_3:3558050-3558069 Msa1089950:five_prime_UTR 30.0%
GGTTCGAACCATATTTATAA+CGG + chr7_3:3558276-3558295 Msa1089950:intron 30.0%
GTTCGAACCATATTTATAAC+GGG + chr7_3:3558277-3558296 Msa1089950:CDS 30.0%
CGGTGATTTAGACTAAATTA+TGG + chr7_3:3558839-3558858 Msa1089950:intron 30.0%
TTTGAATTCGGAGTTAAGTT+TGG - chr7_3:3558940-3558959 None:intergenic 30.0%
! TGTTGTGAAATAGTTGCTTT+AGG + chr7_3:3559290-3559309 Msa1089950:intron 30.0%
! GTTGTGAAATAGTTGCTTTA+GGG + chr7_3:3559291-3559310 Msa1089950:intron 30.0%
! TTGTGAAATAGTTGCTTTAG+GGG + chr7_3:3559292-3559311 Msa1089950:intron 30.0%
GCTCGTGATTTATAAAGATA+AGG + chr7_3:3559657-3559676 Msa1089950:intron 30.0%
CGTGATTTATAAAGATAAGG+CGG + chr7_3:3559660-3559679 Msa1089950:intron 30.0%
ATTACAGAGCTTATAGCTAA+CGG - chr7_3:3559700-3559719 None:intergenic 30.0%
AAGTGACACTCATTATGAAA+CGG - chr7_3:3559754-3559773 None:intergenic 30.0%
!! TTCATAATGAGTGTCACTTT+AGG + chr7_3:3559755-3559774 Msa1089950:intron 30.0%
!! TCATAATGAGTGTCACTTTA+GGG + chr7_3:3559756-3559775 Msa1089950:intron 30.0%
! GAAAATTCTGAGAGAAAAGT+TGG - chr7_3:3559869-3559888 None:intergenic 30.0%
TTGGCACATAGATTAAGAAA+TGG - chr7_3:3559971-3559990 None:intergenic 30.0%
TCTTAATCTATGTGCCAAAA+TGG + chr7_3:3559973-3559992 Msa1089950:intron 30.0%
ATTGTATCTCAAAGTGAATG+TGG + chr7_3:3560186-3560205 Msa1089950:intron 30.0%
TTGTATCTCAAAGTGAATGT+GGG + chr7_3:3560187-3560206 Msa1089950:intron 30.0%
!!! AGCATTTGTCTTTGTTTTGT+CGG + chr7_3:3560216-3560235 Msa1089950:intron 30.0%
CTTAATTGCTATATTCTGCT+TGG + chr7_3:3560251-3560270 Msa1089950:intron 30.0%
ACATTCATTCAGCAATTTAG+AGG - chr7_3:3560349-3560368 None:intergenic 30.0%
GTTCGAAGTATATTCATAGT+TGG + chr7_3:3560437-3560456 Msa1089950:intron 30.0%
TCACTGCATGATAATAACTA+AGG - chr7_3:3560468-3560487 None:intergenic 30.0%
! GTTTTACATACACACTGAAA+AGG - chr7_3:3560680-3560699 None:intergenic 30.0%
TTGGATTAATCTGTTGAACT+TGG + chr7_3:3560761-3560780 Msa1089950:intron 30.0%
! TATTTGTGCCTTTTATTGTC+TGG + chr7_3:3560885-3560904 Msa1089950:intron 30.0%
GAAAAGATCCAGACAATAAA+AGG - chr7_3:3560896-3560915 None:intergenic 30.0%
CTTATGTTTACGCTAATACT+TGG + chr7_3:3560919-3560938 Msa1089950:intron 30.0%
! GTATTTTTCATCACTGATAC+TGG + chr7_3:3561215-3561234 Msa1089950:three_prime_UTR 30.0%
TCAATGCCAAAACTAAGTAT+TGG + chr7_3:3561327-3561346 Msa1089950:three_prime_UTR 30.0%
CTCATACTTTGCATTCAATT+TGG + chr7_3:3561389-3561408 Msa1089950:three_prime_UTR 30.0%
ATTTGGTATAAAACTGCTTG+TGG + chr7_3:3561406-3561425 Msa1089950:three_prime_UTR 30.0%
! CCATCTTTTCTTTTTCCAAA+TGG - chr7_3:3561503-3561522 None:intergenic 30.0%
CCATTTGGAAAAAGAAAAGA+TGG + chr7_3:3561500-3561519 Msa1089950:three_prime_UTR 30.0%
TGGCATCATATACATTCATT+TGG + chr7_3:3561723-3561742 Msa1089950:three_prime_UTR 30.0%
AACACCTATGAAACTAATCT+GGG - chr7_3:3561799-3561818 None:intergenic 30.0%
AAACACCTATGAAACTAATC+TGG - chr7_3:3561800-3561819 None:intergenic 30.0%
TAGTTTCATAGGTGTTTAGA+TGG + chr7_3:3561803-3561822 Msa1089950:three_prime_UTR 30.0%
!!! CTTTCTTTATTTTCATGGCA+TGG + chr7_3:3562003-3562022 Msa1089950:three_prime_UTR 30.0%
! AATGATAATGAGAGTGGAAA+GGG - chr7_3:3562056-3562075 None:intergenic 30.0%
! AATGACAATGATAATGAGAG+TGG - chr7_3:3562062-3562081 None:intergenic 30.0%
! ATTTAGTTTATGTGAACTGG+GGG + chr7_3:3562112-3562131 Msa1089950:three_prime_UTR 30.0%
GTACTTTAGGCGATAAAATA+TGG + chr7_3:3562136-3562155 Msa1089950:three_prime_UTR 30.0%
ATTAATGCTGTGTGATCAAA+TGG - chr7_3:3562338-3562357 None:intergenic 30.0%
AAAAATCACCTGCAACAATA+TGG - chr7_3:3562483-3562502 None:intergenic 30.0%
AGGTAAACTACCATCAAATT+TGG + chr7_3:3562516-3562535 Msa1089950:three_prime_UTR 30.0%
AAACTACCATCAAATTTGGT+TGG + chr7_3:3562520-3562539 Msa1089950:three_prime_UTR 30.0%
ATCAGAAATTCGTAGTCATA+GGG - chr7_3:3562591-3562610 None:intergenic 30.0%
TATCAGAAATTCGTAGTCAT+AGG - chr7_3:3562592-3562611 None:intergenic 30.0%
ACTGGTAGGCTAATTATAAT+AGG + chr7_3:3562683-3562702 Msa1089950:intron 30.0%
CTGGTAGGCTAATTATAATA+GGG + chr7_3:3562684-3562703 Msa1089950:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr7_3:3562743-3562762 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr7_3:3563046-3563065 None:intergenic 30.0%
AACCCATTATAATACACTAG+GGG + chr7_3:3563239-3563258 Msa1089950:intron 30.0%
ATCCCCTAGTGTATTATAAT+GGG - chr7_3:3563244-3563263 None:intergenic 30.0%
TATCCCCTAGTGTATTATAA+TGG - chr7_3:3563245-3563264 None:intergenic 30.0%
!!! TGCCATCATTTTTTTTGGAT+GGG + chr7_3:3563291-3563310 Msa1089950:intron 30.0%
!! TAGTTTTTGGGCATTAAATG+AGG + chr7_3:3563422-3563441 Msa1089950:intron 30.0%
!! AGTTTTTGGGCATTAAATGA+GGG + chr7_3:3563423-3563442 Msa1089950:intron 30.0%
CAAATGAAAGAATTGAACAC+TGG - chr7_3:3563512-3563531 None:intergenic 30.0%
TCTAAACTATGTCTTGAAAG+TGG + chr7_3:3563556-3563575 Msa1089950:intron 30.0%
GAATGGTTCATTACTCAAAT+TGG + chr7_3:3563634-3563653 Msa1089950:intron 30.0%
! TCTAACACTCACTCTTTTAT+TGG + chr7_3:3563908-3563927 Msa1089950:intron 30.0%
! CTAACACTCACTCTTTTATT+GGG + chr7_3:3563909-3563928 Msa1089950:intron 30.0%
ACTGTACATACCAAACAAAA+AGG + chr7_3:3564061-3564080 Msa1089950:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG - chr7_3:3564074-3564093 None:intergenic 30.0%
TTATTGAGTGGTATCAATGT+AGG - chr7_3:3564491-3564510 None:intergenic 30.0%
ACTTGGGAGATAAATATATC+AGG - chr7_3:3564562-3564581 None:intergenic 30.0%
AAGTCAAGTTCAGTTCAATT+GGG - chr7_3:3564585-3564604 None:intergenic 30.0%
AAGATAAACCCATGTATATC+AGG + chr7_3:3564612-3564631 Msa1089950:intron 30.0%
AGATAAACCCATGTATATCA+GGG + chr7_3:3564613-3564632 Msa1089950:intron 30.0%
GTAATTTACCCTGATATACA+TGG - chr7_3:3564624-3564643 None:intergenic 30.0%
TGCTTGCTTACAAAATTTAG+AGG - chr7_3:3564682-3564701 None:intergenic 30.0%
ACAAACAATGTTCAGTTGAA+AGG - chr7_3:3564723-3564742 None:intergenic 30.0%
TCTAAACCTAAAAGGACAAA+CGG - chr7_3:3564771-3564790 None:intergenic 30.0%
CATTAGAGGCTATTAAAGAA+AGG + chr7_3:3564951-3564970 Msa1089950:three_prime_UTR 30.0%
!! AACACAAACCTTAGTTCTAA+AGG - chr7_3:3565022-3565041 None:intergenic 30.0%
AACTAAGGTTTGTGTTCTAT+TGG + chr7_3:3565026-3565045 Msa1089950:three_prime_UTR 30.0%
AAGAAAATGCTTCCACAAAA+GGG - chr7_3:3565111-3565130 None:intergenic 30.0%
TAAGAAAATGCTTCCACAAA+AGG - chr7_3:3565112-3565131 None:intergenic 30.0%
AATGACTCTATAAGTCTTTG+GGG - chr7_3:3565135-3565154 None:intergenic 30.0%
CAATGACTCTATAAGTCTTT+GGG - chr7_3:3565136-3565155 None:intergenic 30.0%
CAAAGACTTATAGAGTCATT+GGG + chr7_3:3565135-3565154 Msa1089950:three_prime_UTR 30.0%
! TTCTCAAGTTCAAGTTCAAG+TGG - chr7_3:3558004-3558023 None:intergenic 35.0%
! TGTTTAGAGTAAAACGACAC+CGG + chr7_3:3558025-3558044 Msa1089950:five_prime_UTR 35.0%
CCGGATTTACTTCAAAAGTT+AGG + chr7_3:3558044-3558063 Msa1089950:five_prime_UTR 35.0%
TGGAAGACCCGTTATAAATA+TGG - chr7_3:3558287-3558306 None:intergenic 35.0%
TCTCTCTCTTTAACATCTTC+TGG - chr7_3:3558307-3558326 None:intergenic 35.0%
AACTTCAAAACCTTTGTCGA+TGG + chr7_3:3558326-3558345 Msa1089950:CDS 35.0%
TGCTGCTAAAGATATTCTTC+AGG + chr7_3:3558435-3558454 Msa1089950:CDS 35.0%
ATGAAGAACAGATTTAGCCT+CGG - chr7_3:3558476-3558495 None:intergenic 35.0%
ATCTGTTCTTCATACTGAGA+TGG + chr7_3:3558483-3558502 Msa1089950:CDS 35.0%
TTATGTGTCTGTGTCATGTT+TGG + chr7_3:3558761-3558780 Msa1089950:intron 35.0%
TCAACTATGAATCACGTACA+AGG - chr7_3:3558790-3558809 None:intergenic 35.0%
TCTCACAATAAGTGCATGTT+TGG + chr7_3:3558811-3558830 Msa1089950:intron 35.0%
! TAAGTGCATGTTTGGAATGA+CGG + chr7_3:3558819-3558838 Msa1089950:intron 35.0%
!! TGTGATTTGTTGAAACTCCA+AGG + chr7_3:3558874-3558893 Msa1089950:intron 35.0%
ATTTGAACAAACCTCTACCT+TGG - chr7_3:3558894-3558913 None:intergenic 35.0%
! GTAGAGGTTTGTTCAAATCA+TGG + chr7_3:3558896-3558915 Msa1089950:intron 35.0%
TCTTAGTGCGTGTTTGAATT+CGG - chr7_3:3558952-3558971 None:intergenic 35.0%
! TTTGTGTTAGTTTACCCATG+TGG - chr7_3:3559146-3559165 None:intergenic 35.0%
CTAATTGCACTGAACAATAG+TGG - chr7_3:3559324-3559343 None:intergenic 35.0%
! AGAAAAACCGATATTTTCCG+CGG + chr7_3:3559342-3559361 Msa1089950:intron 35.0%
TGAATTGGAACATAACTGCT+AGG - chr7_3:3559545-3559564 None:intergenic 35.0%
TAGCAGTTATGTTCCAATTC+AGG + chr7_3:3559544-3559563 Msa1089950:CDS 35.0%
GTAATTATTGAGGGCAAAGT+TGG - chr7_3:3559845-3559864 None:intergenic 35.0%
TAATCTATGTGCCAAAATGG+AGG + chr7_3:3559976-3559995 Msa1089950:intron 35.0%
AATCTATGTGCCAAAATGGA+GGG + chr7_3:3559977-3559996 Msa1089950:intron 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG - chr7_3:3560013-3560032 None:intergenic 35.0%
AAACGACACTCATTGTGAAA+TGG + chr7_3:3560014-3560033 Msa1089950:intron 35.0%
! GGCTTGATATTTTCTCTTGT+TGG + chr7_3:3560054-3560073 Msa1089950:intron 35.0%
TGCTTTAATCTTGCCTTCTT+TGG - chr7_3:3560319-3560338 None:intergenic 35.0%
ATGTGTTATGTACATCCTAC+TGG + chr7_3:3560373-3560392 Msa1089950:intron 35.0%
ACATTAATGAGGAAGAAGTG+AGG + chr7_3:3560652-3560671 Msa1089950:CDS 35.0%
CATTAATGAGGAAGAAGTGA+GGG + chr7_3:3560653-3560672 Msa1089950:CDS 35.0%
ATTAATGAGGAAGAAGTGAG+GGG + chr7_3:3560654-3560673 Msa1089950:CDS 35.0%
TTCTATGCCGTGTCATATAT+TGG + chr7_3:3560742-3560761 Msa1089950:intron 35.0%
ATCTTCATTTGCTTAAAGCC+AGG - chr7_3:3560804-3560823 None:intergenic 35.0%
GCAAATGAAGATTATAAGGC+AGG + chr7_3:3560812-3560831 Msa1089950:CDS 35.0%
CAGATGCTCCACAATAAAAA+AGG - chr7_3:3561052-3561071 None:intergenic 35.0%
!!! CCAATACTTAGTTTTGGCAT+TGG - chr7_3:3561279-3561298 None:intergenic 35.0%
CCAATGCCAAAACTAAGTAT+TGG + chr7_3:3561276-3561295 Msa1089950:three_prime_UTR 35.0%
TACTGATAAGTCATTGCTAC+TGG - chr7_3:3561563-3561582 None:intergenic 35.0%
ATGACTTATCAGTAGCTTGA+AGG + chr7_3:3561569-3561588 Msa1089950:three_prime_UTR 35.0%
TGACTTATCAGTAGCTTGAA+GGG + chr7_3:3561570-3561589 Msa1089950:three_prime_UTR 35.0%
AACATGAGCAGTGATGATAA+TGG - chr7_3:3561690-3561709 None:intergenic 35.0%
TCATGTTAATGAATGCACAG+TGG + chr7_3:3561703-3561722 Msa1089950:three_prime_UTR 35.0%
TAGATGGCGTTATCATTTGT+AGG + chr7_3:3561819-3561838 Msa1089950:three_prime_UTR 35.0%
ACAACACATGAACCTAAAGT+TGG - chr7_3:3561955-3561974 None:intergenic 35.0%
! CAATGATAATGAGAGTGGAA+AGG - chr7_3:3562057-3562076 None:intergenic 35.0%
AAAACAGGAGGCTAAAAAAG+TGG - chr7_3:3562088-3562107 None:intergenic 35.0%
! GGATCTAGTTTAAAAAGCCT+GGG - chr7_3:3562297-3562316 None:intergenic 35.0%
! TGGATCTAGTTTAAAAAGCC+TGG - chr7_3:3562298-3562317 None:intergenic 35.0%
! TTTTTAAACTAGATCCACCC+TGG + chr7_3:3562301-3562320 Msa1089950:three_prime_UTR 35.0%
GACAAAGCTTCCTTTCATAA+TGG + chr7_3:3562437-3562456 Msa1089950:three_prime_UTR 35.0%
! AAGCTTCCTTTCATAATGGA+AGG + chr7_3:3562441-3562460 Msa1089950:three_prime_UTR 35.0%
AATGGACCTTCCATTATGAA+AGG - chr7_3:3562450-3562469 None:intergenic 35.0%
TGAAGCAGCCATTGAATTAT+AGG + chr7_3:3562563-3562582 Msa1089950:three_prime_UTR 35.0%
! ATAGGGCACCTATAATTCAA+TGG - chr7_3:3562574-3562593 None:intergenic 35.0%
TTTGTTTGTGTAGAAGTGAC+TGG + chr7_3:3562665-3562684 Msa1089950:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr7_3:3563201-3563220 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr7_3:3563200-3563219 None:intergenic 35.0%
AGGTAAGGACTAAACTTACA+AGG + chr7_3:3563185-3563204 Msa1089950:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr7_3:3563200-3563219 Msa1089950:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr7_3:3563201-3563220 Msa1089950:intron 35.0%
AAAAAAATGATGGCAGGATG+AGG - chr7_3:3563286-3563305 None:intergenic 35.0%
!!! CATCCTGCCATCATTTTTTT+TGG + chr7_3:3563286-3563305 Msa1089950:intron 35.0%
CATCCAAAAAAAATGATGGC+AGG - chr7_3:3563292-3563311 None:intergenic 35.0%
!!! CTGCCATCATTTTTTTTGGA+TGG + chr7_3:3563290-3563309 Msa1089950:intron 35.0%
TGCCCATCCAAAAAAAATGA+TGG - chr7_3:3563296-3563315 None:intergenic 35.0%
!! CTCACACACTTTGAGTTTTA+CGG + chr7_3:3563378-3563397 Msa1089950:intron 35.0%
AGTGGTAGTATTCTTGCAAA+TGG + chr7_3:3563574-3563593 Msa1089950:intron 35.0%
TGCTGCAACATAATTCTAAG+AGG - chr7_3:3564101-3564120 None:intergenic 35.0%
AATTATGTTGCAGCAAACCT+TGG + chr7_3:3564106-3564125 Msa1089950:intron 35.0%
ATTATGTTGCAGCAAACCTT+GGG + chr7_3:3564107-3564126 Msa1089950:intron 35.0%
ACTACTGTGTTCATATGCAT+TGG + chr7_3:3564148-3564167 Msa1089950:intron 35.0%
!!! TTTTTTACATTCGCCCAAGT+CGG + chr7_3:3564353-3564372 Msa1089950:intron 35.0%
GAAGTCAAGTTCAGTTCAAT+TGG - chr7_3:3564586-3564605 None:intergenic 35.0%
! AGACTTGCTCTAAACCTAAA+AGG - chr7_3:3564779-3564798 None:intergenic 35.0%
!! TAGCTGTTCCTTTAGAACTA+AGG + chr7_3:3565011-3565030 Msa1089950:three_prime_UTR 35.0%
GGAGAAGTTACAACCTTATA+TGG + chr7_3:3565047-3565066 Msa1089950:three_prime_UTR 35.0%
TTACAACCTTATATGGAGAG+TGG + chr7_3:3565054-3565073 Msa1089950:three_prime_UTR 35.0%
AGAAAATGCTTCCACAAAAG+GGG - chr7_3:3565110-3565129 None:intergenic 35.0%
CCAATGACTCTATAAGTCTT+TGG - chr7_3:3565137-3565156 None:intergenic 35.0%
CCAAAGACTTATAGAGTCAT+TGG + chr7_3:3565134-3565153 Msa1089950:three_prime_UTR 35.0%
!! TGAAGGAAGTACTACCTCTT+CGG - chr7_3:3558201-3558220 None:intergenic 40.0%
AACTGAGAAGCTTCAAAACC+AGG - chr7_3:3558355-3558374 None:intergenic 40.0%
TTTCAAAGCCGAAAAGCCTA+TGG + chr7_3:3558378-3558397 Msa1089950:CDS 40.0%
TTCAAAGCCGAAAAGCCTAT+GGG + chr7_3:3558379-3558398 Msa1089950:CDS 40.0%
! AGCAAAACCCATAGGCTTTT+CGG - chr7_3:3558389-3558408 None:intergenic 40.0%
TTGAAGAGAGCAAAACCCAT+AGG - chr7_3:3558397-3558416 None:intergenic 40.0%
TTAGCAGCAATAGCTTGATG+AGG - chr7_3:3558424-3558443 None:intergenic 40.0%
TGAAGAACAGATTTAGCCTC+GGG - chr7_3:3558475-3558494 None:intergenic 40.0%
TGTCAATGTCGGTATTGTGA+AGG - chr7_3:3558643-3558662 None:intergenic 40.0%
!! ATCAGCAGAAGTGTCAATGT+CGG - chr7_3:3558654-3558673 None:intergenic 40.0%
TTGTTGAAACTCCAAGGTAG+AGG + chr7_3:3558880-3558899 Msa1089950:intron 40.0%
GCTGGGGATTATAATCATAC+TGG + chr7_3:3559071-3559090 Msa1089950:CDS 40.0%
TAGCCTGCATATGGATCATA+CGG - chr7_3:3559479-3559498 None:intergenic 40.0%
TGTTCCAATTCAGGTGAGAA+TGG + chr7_3:3559553-3559572 Msa1089950:intron 40.0%
AAAGCCATTCTCACCTGAAT+TGG - chr7_3:3559560-3559579 None:intergenic 40.0%
GACACTCATTGTGAAATGGA+GGG + chr7_3:3560018-3560037 Msa1089950:intron 40.0%
AATGGAGGGAGTAGTTGAAA+AGG + chr7_3:3560032-3560051 Msa1089950:intron 40.0%
ATGGAGGGAGTAGTTGAAAA+GGG + chr7_3:3560033-3560052 Msa1089950:intron 40.0%
TATCTCAAAGTGAATGTGGG+AGG + chr7_3:3560190-3560209 Msa1089950:intron 40.0%
ATCTCAAAGTGAATGTGGGA+GGG + chr7_3:3560191-3560210 Msa1089950:intron 40.0%
CTTGCAACACCCTGTTTATT+GGG + chr7_3:3560616-3560635 Msa1089950:CDS 40.0%
ACCCTGTTTATTGGGAACTT+GGG + chr7_3:3560624-3560643 Msa1089950:CDS 40.0%
TCCCAAGTTCCCAATAAACA+GGG - chr7_3:3560628-3560647 None:intergenic 40.0%
CTTGGGAGAGAACATTAATG+AGG + chr7_3:3560641-3560660 Msa1089950:CDS 40.0%
TGAAGATTATAAGGCAGGAG+AGG + chr7_3:3560817-3560836 Msa1089950:CDS 40.0%
GGTATCCAATAACCTATTGC+AGG + chr7_3:3560940-3560959 Msa1089950:intron 40.0%
CACATCCTGCAATAGGTTAT+TGG - chr7_3:3560948-3560967 None:intergenic 40.0%
CACTATTCACATCCTGCAAT+AGG - chr7_3:3560955-3560974 None:intergenic 40.0%
!! ATCCCAAGTTCTGGTTCAAT+TGG + chr7_3:3561010-3561029 Msa1089950:CDS 40.0%
TGCCAATTGAACCAGAACTT+GGG - chr7_3:3561015-3561034 None:intergenic 40.0%
ATGCCAATTGAACCAGAACT+TGG - chr7_3:3561016-3561035 None:intergenic 40.0%
TTCTCTATTAACCCAGCATC+TGG + chr7_3:3561114-3561133 Msa1089950:three_prime_UTR 40.0%
TCTCTATTAACCCAGCATCT+GGG + chr7_3:3561115-3561134 Msa1089950:three_prime_UTR 40.0%
TGGTTTCTCCATTCTGTTGT+AGG + chr7_3:3561426-3561445 Msa1089950:three_prime_UTR 40.0%
ATTCCTTGCCTACAACAGAA+TGG - chr7_3:3561437-3561456 None:intergenic 40.0%
AAAAGATGGAACCTACCCTA+TGG + chr7_3:3561514-3561533 Msa1089950:three_prime_UTR 40.0%
GACTTATCAGTAGCTTGAAG+GGG + chr7_3:3561571-3561590 Msa1089950:three_prime_UTR 40.0%
! GGCGATGACTTGATAATCAA+TGG - chr7_3:3561669-3561688 None:intergenic 40.0%
!! GGTTCCCAGATTAGTTTCAT+AGG + chr7_3:3561792-3561811 Msa1089950:three_prime_UTR 40.0%
TTAGGGATGCTTATCCAAAC+AGG + chr7_3:3561914-3561933 Msa1089950:three_prime_UTR 40.0%
ATGCTTATCCAAACAGGCAT+TGG + chr7_3:3561920-3561939 Msa1089950:three_prime_UTR 40.0%
TGGTATCTGCTTCCAACTTT+AGG + chr7_3:3561940-3561959 Msa1089950:three_prime_UTR 40.0%
AAATGGAGTCATGAATGCCA+GGG - chr7_3:3562321-3562340 None:intergenic 40.0%
CAATATGGCAGTAGCAGAAA+TGG - chr7_3:3562468-3562487 None:intergenic 40.0%
!! GCAGGTGATTTTTGTTTGCA+CGG + chr7_3:3562490-3562509 Msa1089950:three_prime_UTR 40.0%
!! CAGGTGATTTTTGTTTGCAC+GGG + chr7_3:3562491-3562510 Msa1089950:three_prime_UTR 40.0%
!! GATTTTTGTTTGCACGGGTA+AGG + chr7_3:3562496-3562515 Msa1089950:three_prime_UTR 40.0%
GACGTTCCAACCAAATTTGA+TGG - chr7_3:3562529-3562548 None:intergenic 40.0%
AATTTGGTTGGAACGTCTGT+TGG + chr7_3:3562532-3562551 Msa1089950:three_prime_UTR 40.0%
TTTGTGTAGAAGTGACTGGT+AGG + chr7_3:3562669-3562688 Msa1089950:intron 40.0%
AGGGGATAATAGAGTCATTG+TGG + chr7_3:3563257-3563276 Msa1089950:intron 40.0%
GGGGATAATAGAGTCATTGT+GGG + chr7_3:3563258-3563277 Msa1089950:intron 40.0%
GGGATAATAGAGTCATTGTG+GGG + chr7_3:3563259-3563278 Msa1089950:intron 40.0%
!! ACACACTTTGAGTTTTACGG+TGG + chr7_3:3563381-3563400 Msa1089950:intron 40.0%
ATCACAGTAGACATTTGACG+AGG + chr7_3:3563733-3563752 Msa1089950:intron 40.0%
!! GACGACTCTAGAAACTTTTC+TGG - chr7_3:3563814-3563833 None:intergenic 40.0%
! ATGCTAGCAACACTCTCTTT+TGG + chr7_3:3563877-3563896 Msa1089950:intron 40.0%
! TGCTAGCAACACTCTCTTTT+GGG + chr7_3:3563878-3563897 Msa1089950:intron 40.0%
CTAATTTACGTTGAGTCCCA+AGG - chr7_3:3564126-3564145 None:intergenic 40.0%
! TTTTTACATTCGCCCAAGTC+GGG + chr7_3:3564354-3564373 Msa1089950:intron 40.0%
TATGTCCCACCACTTTATGT+GGG + chr7_3:3564445-3564464 Msa1089950:intron 40.0%
GAAATGGAACCCACATAAAG+TGG - chr7_3:3564457-3564476 None:intergenic 40.0%
ATCAATGTAGGACACCACTT+TGG - chr7_3:3564479-3564498 None:intergenic 40.0%
! GCACTCACTCTTTTATTGAG+TGG - chr7_3:3564503-3564522 None:intergenic 40.0%
GTTCAGTTCAATTGGGACTT+GGG - chr7_3:3564578-3564597 None:intergenic 40.0%
AGTTCAGTTCAATTGGGACT+TGG - chr7_3:3564579-3564598 None:intergenic 40.0%
GGACAAACGGTTGTTGAAAA+TGG - chr7_3:3564758-3564777 None:intergenic 40.0%
! CAACAACCGTTTGTCCTTTT+AGG + chr7_3:3564762-3564781 Msa1089950:intron 40.0%
! GTTTAGAGCAAGTCTTGCTT+TGG + chr7_3:3564784-3564803 Msa1089950:intron 40.0%
! CCTCTAATGTCGTTTCACAT+CGG - chr7_3:3564940-3564959 None:intergenic 40.0%
!! AGTTCTAAAGGAACAGCTAG+TGG - chr7_3:3565010-3565029 None:intergenic 40.0%
GATTCATTCATGGCAGCCAA+CGG + chr7_3:3558095-3558114 Msa1089950:exon 45.0%
GGAAGAAGGAGAAGGAATAG+CGG - chr7_3:3558180-3558199 None:intergenic 45.0%
AGTACTACCTCTTCGGAAGA+AGG - chr7_3:3558194-3558213 None:intergenic 45.0%
AACCTTTGTCGATGGTTACC+TGG + chr7_3:3558334-3558353 Msa1089950:CDS 45.0%
AACCAGGTAACCATCGACAA+AGG - chr7_3:3558339-3558358 None:intergenic 45.0%
!! GGATATGCTTTTTGATCCCG+AGG + chr7_3:3558456-3558475 Msa1089950:CDS 45.0%
GACATTGACACTTCTGCTGA+TGG + chr7_3:3558653-3558672 Msa1089950:intron 45.0%
AGTAAACGGTTACGAACAGC+TGG + chr7_3:3559053-3559072 Msa1089950:CDS 45.0%
GTAAACGGTTACGAACAGCT+GGG + chr7_3:3559054-3559073 Msa1089950:CDS 45.0%
TAAACGGTTACGAACAGCTG+GGG + chr7_3:3559055-3559074 Msa1089950:CDS 45.0%
TTGCAGACCGCGGAAAATAT+CGG - chr7_3:3559352-3559371 None:intergenic 45.0%
ATGTTGACAATTGCAGACCG+CGG - chr7_3:3559362-3559381 None:intergenic 45.0%
GAGCTCAAAATTGCACACGA+AGG - chr7_3:3559641-3559660 None:intergenic 45.0%
! TTGTCTTTCGCCCTCCATTT+TGG - chr7_3:3559990-3560009 None:intergenic 45.0%
CGACACTCATTGTGAAATGG+AGG + chr7_3:3560017-3560036 Msa1089950:intron 45.0%
ACTGTCCTTGAAGTCCTGAA+CGG + chr7_3:3560145-3560164 Msa1089950:intron 45.0%
TCTCAAAGTGAATGTGGGAG+GGG + chr7_3:3560192-3560211 Msa1089950:intron 45.0%
!! TAAACAGGGTGTTGCAAGGA+GGG - chr7_3:3560614-3560633 None:intergenic 45.0%
!! ATAAACAGGGTGTTGCAAGG+AGG - chr7_3:3560615-3560634 None:intergenic 45.0%
!! CCAATAAACAGGGTGTTGCA+AGG - chr7_3:3560618-3560637 None:intergenic 45.0%
CCTTGCAACACCCTGTTTAT+TGG + chr7_3:3560615-3560634 Msa1089950:CDS 45.0%
CACCCTGTTTATTGGGAACT+TGG + chr7_3:3560623-3560642 Msa1089950:CDS 45.0%
CTCCCAAGTTCCCAATAAAC+AGG - chr7_3:3560629-3560648 None:intergenic 45.0%
GAACAGAAGAGCTGTGTCAA+AGG - chr7_3:3560707-3560726 None:intergenic 45.0%
GCTTTGTAATGCAGACAACC+TGG + chr7_3:3560783-3560802 Msa1089950:intron 45.0%
AAATGTGCACCACAATCTGC+AGG + chr7_3:3560979-3560998 Msa1089950:CDS 45.0%
AATGTGCACCACAATCTGCA+GGG + chr7_3:3560980-3560999 Msa1089950:CDS 45.0%
!! GTTCTGGTTCAATTGGCATG+CGG + chr7_3:3561017-3561036 Msa1089950:CDS 45.0%
CTCTATTAACCCAGCATCTG+GGG + chr7_3:3561116-3561135 Msa1089950:three_prime_UTR 45.0%
AGTCATAAACCCCAGATGCT+GGG - chr7_3:3561128-3561147 None:intergenic 45.0%
! AGCATCTGGGGTTTATGACT+GGG + chr7_3:3561128-3561147 Msa1089950:three_prime_UTR 45.0%
TCTCCATTCTGTTGTAGGCA+AGG + chr7_3:3561431-3561450 Msa1089950:three_prime_UTR 45.0%
CATTTATCGGCAGCATGTGT+TGG + chr7_3:3561771-3561790 Msa1089950:three_prime_UTR 45.0%
AGCAGATACCAATGCCTGTT+TGG - chr7_3:3561931-3561950 None:intergenic 45.0%
ATGAGAGTGGAAAGGGTAGA+TGG - chr7_3:3562049-3562068 None:intergenic 45.0%
!! GTCTTCTAAAGTACACTCCC+AGG + chr7_3:3562277-3562296 Msa1089950:three_prime_UTR 45.0%
CAAATGGAGTCATGAATGCC+AGG - chr7_3:3562322-3562341 None:intergenic 45.0%
TGCTACTGCCATATTGTTGC+AGG + chr7_3:3562472-3562491 Msa1089950:three_prime_UTR 45.0%
AATTTGTCTGGTCCCGACTT+GGG - chr7_3:3564369-3564388 None:intergenic 45.0%
AAATTTGTCTGGTCCCGACT+TGG - chr7_3:3564370-3564389 None:intergenic 45.0%
GTATGTCCCACCACTTTATG+TGG + chr7_3:3564444-3564463 Msa1089950:intron 45.0%
TGGAACCCACATAAAGTGGT+GGG - chr7_3:3564453-3564472 None:intergenic 45.0%
ATGGAACCCACATAAAGTGG+TGG - chr7_3:3564454-3564473 None:intergenic 45.0%
TGTGGGTTCCATTTCCAAAG+TGG + chr7_3:3564462-3564481 Msa1089950:intron 45.0%
! GTAGGACACCACTTTGGAAA+TGG - chr7_3:3564473-3564492 None:intergenic 45.0%
CCGATGTGAAACGACATTAG+AGG + chr7_3:3564937-3564956 Msa1089950:three_prime_UTR 45.0%
ACACTGCCACTCTCCATATA+AGG - chr7_3:3565063-3565082 None:intergenic 45.0%
! GATCCTATTAGCCCCTTTTG+TGG + chr7_3:3565096-3565115 Msa1089950:three_prime_UTR 45.0%
CTTCCACAAAAGGGGCTAAT+AGG - chr7_3:3565102-3565121 None:intergenic 45.0%
!!! ATAATAAGATAATAATTTTT+CGG - chr7_3:3564316-3564335 None:intergenic 5.0%
GAAGGAGAAGGAATAGCGGT+GGG - chr7_3:3558176-3558195 None:intergenic 50.0%
AGAAGGAGAAGGAATAGCGG+TGG - chr7_3:3558177-3558196 None:intergenic 50.0%
TCCTTCTCCTTCTTCCGAAG+AGG + chr7_3:3558184-3558203 Msa1089950:CDS 50.0%
ACCTCTTCGGAAGAAGGAGA+AGG - chr7_3:3558188-3558207 None:intergenic 50.0%
TATGGATCATACGGAGGAGG+AGG - chr7_3:3559470-3559489 None:intergenic 50.0%
GCATATGGATCATACGGAGG+AGG - chr7_3:3559473-3559492 None:intergenic 50.0%
CCTGCATATGGATCATACGG+AGG - chr7_3:3559476-3559495 None:intergenic 50.0%
CCTCCGTATGATCCATATGC+AGG + chr7_3:3559473-3559492 Msa1089950:CDS 50.0%
GCAACAGGATAGCCTGCATA+TGG - chr7_3:3559488-3559507 None:intergenic 50.0%
!! GGCATTGGTACTTGTGCAAC+AGG - chr7_3:3559503-3559522 None:intergenic 50.0%
ATAGACACAGGAGCAGGCAT+TGG - chr7_3:3559518-3559537 None:intergenic 50.0%
CTGCTAGGTGAGATAGACAC+AGG - chr7_3:3559530-3559549 None:intergenic 50.0%
CTGTCCTTGAAGTCCTGAAC+GGG + chr7_3:3560146-3560165 Msa1089950:intron 50.0%
TAACAGCACCCTGCAGATTG+TGG - chr7_3:3560991-3561010 None:intergenic 50.0%
!! GGTGCTGTTATCCCAAGTTC+TGG + chr7_3:3561001-3561020 Msa1089950:CDS 50.0%
CAGTCATAAACCCCAGATGC+TGG - chr7_3:3561129-3561148 None:intergenic 50.0%
! CAGCATCTGGGGTTTATGAC+TGG + chr7_3:3561127-3561146 Msa1089950:three_prime_UTR 50.0%
CATTGCTACTGGAGCTCCAT+TGG - chr7_3:3561552-3561571 None:intergenic 50.0%
! CGTTTCACATCGGCCTGTTT+TGG - chr7_3:3564930-3564949 None:intergenic 50.0%
TCCACCCTTACCACCAGCAA+TGG + chr7_3:3558120-3558139 Msa1089950:CDS 55.0%
GAGGCCATTGCTGGTGGTAA+GGG - chr7_3:3558127-3558146 None:intergenic 55.0%
!! GAAGGAATAGCGGTGGGTTG+AGG - chr7_3:3558170-3558189 None:intergenic 55.0%
CTGCTGATGGCAGATGTGTC+TGG + chr7_3:3558666-3558685 Msa1089950:intron 55.0%
GGCGGAGGATGAAAAGGAGA+CGG - chr7_3:3559107-3559126 None:intergenic 55.0%
CACCTGTTTGGGGACCACAT+GGG + chr7_3:3559129-3559148 Msa1089950:intron 55.0%
TACCCATGTGGTCCCCAAAC+AGG - chr7_3:3559134-3559153 None:intergenic 55.0%
GGTGAGATAGACACAGGAGC+AGG - chr7_3:3559524-3559543 None:intergenic 55.0%
TGTGCCCGTTCAGGACTTCA+AGG - chr7_3:3560153-3560172 None:intergenic 55.0%
GAACTCTTCTGTGCCCGTTC+AGG - chr7_3:3560162-3560181 None:intergenic 55.0%
ACCTACCCTATGGCTGTTCC+TGG + chr7_3:3561524-3561543 Msa1089950:three_prime_UTR 55.0%
ACCAGGAACAGCCATAGGGT+AGG - chr7_3:3561528-3561547 None:intergenic 55.0%
TGGCACCAGGAACAGCCATA+GGG - chr7_3:3561532-3561551 None:intergenic 55.0%
TTGGCACCAGGAACAGCCAT+AGG - chr7_3:3561533-3561552 None:intergenic 55.0%
! ATGGCTGTTCCTGGTGCCAA+TGG + chr7_3:3561533-3561552 Msa1089950:three_prime_UTR 55.0%
! GTGAACTGGGGGCGTACTTT+AGG + chr7_3:3562123-3562142 Msa1089950:three_prime_UTR 55.0%
TGGAGTCATGAATGCCAGGG+TGG - chr7_3:3562318-3562337 None:intergenic 55.0%
ACAGCTAGTGGCGTTTGAGG+TGG - chr7_3:3564998-3565017 None:intergenic 55.0%
GGAACAGCTAGTGGCGTTTG+AGG - chr7_3:3565001-3565020 None:intergenic 55.0%
GTGGTAAGGGTGGATGCCGT+TGG - chr7_3:3558114-3558133 None:intergenic 60.0%
GCCATTGCTGGTGGTAAGGG+TGG - chr7_3:3558124-3558143 None:intergenic 60.0%
GGAGGCCATTGCTGGTGGTA+AGG - chr7_3:3558128-3558147 None:intergenic 60.0%
!! ATAGCGGTGGGTTGAGGAGG+AGG - chr7_3:3558164-3558183 None:intergenic 60.0%
!! GGAATAGCGGTGGGTTGAGG+AGG - chr7_3:3558167-3558186 None:intergenic 60.0%
!! GGTGGTGGCGGAGGATGAAA+AGG - chr7_3:3559113-3559132 None:intergenic 60.0%
ATCCTCCGCCACCACCTGTT+TGG + chr7_3:3559117-3559136 Msa1089950:intron 60.0%
TCCTCCGCCACCACCTGTTT+GGG + chr7_3:3559118-3559137 Msa1089950:intron 60.0%
TGTGGTCCCCAAACAGGTGG+TGG - chr7_3:3559128-3559147 None:intergenic 60.0%
CCATGTGGTCCCCAAACAGG+TGG - chr7_3:3559131-3559150 None:intergenic 60.0%
CCACCTGTTTGGGGACCACA+TGG + chr7_3:3559128-3559147 Msa1089950:intron 60.0%
TCATACGGAGGAGGAGGTGG+TGG - chr7_3:3559464-3559483 None:intergenic 60.0%
GGATCATACGGAGGAGGAGG+TGG - chr7_3:3559467-3559486 None:intergenic 60.0%
ACTGGAGCTCCATTGGCACC+AGG - chr7_3:3561545-3561564 None:intergenic 60.0%
TTGAGGAGGAGGAGGAGCGG+CGG - chr7_3:3558153-3558172 None:intergenic 65.0%
GGGTTGAGGAGGAGGAGGAG+CGG - chr7_3:3558156-3558175 None:intergenic 65.0%
CCTCCGCCACCACCTGTTTG+GGG + chr7_3:3559119-3559138 Msa1089950:intron 65.0%
! GGTCCCCAAACAGGTGGTGG+CGG - chr7_3:3559125-3559144 None:intergenic 65.0%
!! GCGGTGGGTTGAGGAGGAGG+AGG - chr7_3:3558161-3558180 None:intergenic 70.0%
!! CCCCAAACAGGTGGTGGCGG+AGG - chr7_3:3559122-3559141 None:intergenic 70.0%
CGGCGGGAGGCCATTGCTGG+TGG - chr7_3:3558133-3558152 None:intergenic 75.0%
AGGAGGAGGAGGAGCGGCGG+CGG - chr7_3:3558150-3558169 None:intergenic 75.0%
! CGGCGGCGGGAGGCCATTGC+TGG - chr7_3:3558136-3558155 None:intergenic 80.0%
! GGAGGAGGAGGAGCGGCGGC+GGG - chr7_3:3558149-3558168 None:intergenic 80.0%
! GGAGGAGGAGCGGCGGCGGG+AGG - chr7_3:3558146-3558165 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 3557940 3565265 3557940 ID=Msa1089950;Name=Msa1089950
chr7_3 mRNA 3557940 3565265 3557940 ID=Msa1089950-mRNA-1;Parent=Msa1089950;Name=Msa1089950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=164|0.71|0.87|1|0.85|0.75|8|1880|274
chr7_3 exon 3557940 3558205 3557940 ID=Msa1089950-mRNA-1:exon:1398;Parent=Msa1089950-mRNA-1
chr7_3 exon 3558277 3558532 3558277 ID=Msa1089950-mRNA-1:exon:1399;Parent=Msa1089950-mRNA-1
chr7_3 exon 3559027 3559105 3559027 ID=Msa1089950-mRNA-1:exon:1400;Parent=Msa1089950-mRNA-1
chr7_3 exon 3559451 3559565 3559451 ID=Msa1089950-mRNA-1:exon:1401;Parent=Msa1089950-mRNA-1
chr7_3 exon 3560597 3560688 3560597 ID=Msa1089950-mRNA-1:exon:1402;Parent=Msa1089950-mRNA-1
chr7_3 exon 3560797 3560866 3560797 ID=Msa1089950-mRNA-1:exon:1403;Parent=Msa1089950-mRNA-1
chr7_3 exon 3560962 3562622 3560962 ID=Msa1089950-mRNA-1:exon:1404;Parent=Msa1089950-mRNA-1
chr7_3 exon 3564936 3565265 3564936 ID=Msa1089950-mRNA-1:exon:1405;Parent=Msa1089950-mRNA-1
chr7_3 five_prime_UTR 3557940 3558103 3557940 ID=Msa1089950-mRNA-1:five_prime_utr;Parent=Msa1089950-mRNA-1
chr7_3 CDS 3558104 3558205 3558104 ID=Msa1089950-mRNA-1:cds;Parent=Msa1089950-mRNA-1
chr7_3 CDS 3558277 3558532 3558277 ID=Msa1089950-mRNA-1:cds;Parent=Msa1089950-mRNA-1
chr7_3 CDS 3559027 3559105 3559027 ID=Msa1089950-mRNA-1:cds;Parent=Msa1089950-mRNA-1
chr7_3 CDS 3559451 3559565 3559451 ID=Msa1089950-mRNA-1:cds;Parent=Msa1089950-mRNA-1
chr7_3 CDS 3560597 3560688 3560597 ID=Msa1089950-mRNA-1:cds;Parent=Msa1089950-mRNA-1
chr7_3 CDS 3560797 3560866 3560797 ID=Msa1089950-mRNA-1:cds;Parent=Msa1089950-mRNA-1
chr7_3 CDS 3560962 3561072 3560962 ID=Msa1089950-mRNA-1:cds;Parent=Msa1089950-mRNA-1
chr7_3 three_prime_UTR 3561073 3562622 3561073 ID=Msa1089950-mRNA-1:three_prime_utr;Parent=Msa1089950-mRNA-1
chr7_3 three_prime_UTR 3564936 3565265 3564936 ID=Msa1089950-mRNA-1:three_prime_utr;Parent=Msa1089950-mRNA-1
Gene Sequence

>Msa1089950

ATGGCAGCCAACGGCATCCACCCTTACCACCAGCAATGGCCTCCCGCCGCCGCTCCTCCTCCTCCTCAACCCACCGCTATTCCTTCTCCTTCTTCCGAAGAGGTTCGAACCATATTTATAACGGGTCTTCCAGAAGATGTTAAAGAGAGAGAACTTCAAAACCTTTGTCGATGGTTACCTGGTTTTGAAGCTTCTCAGTTGAATTTCAAAGCCGAAAAGCCTATGGGTTTTGCTCTCTTCAATTCTCCTCATCAAGCTATTGCTGCTAAAGATATTCTTCAGGATATGCTTTTTGATCCCGAGGCTAAATCTGTTCTTCATACTGAGATGGCTAAGAAAAATCTCTTTGTTAAACGAGGAGCTGATGCAGTTGCTTTTGATCAAAGTAAACGGTTACGAACAGCTGGGGATTATAATCATACTGGTTATGTAACTCCATATATGGCTCCACCACCTCCTCCTCCGTATGATCCATATGCAGGCTATCCTGTTGCACAAGTACCAATGCCTGCTCCTGTGTCTATCTCACCTAGCAGTTATGTTCCAATTCAGAACACTAAAGATAACCCTCCTTGCAACACCCTGTTTATTGGGAACTTGGGAGAGAACATTAATGAGGAAGAAGTGAGGGGCCTTTTCAGTGTACAACCTGGCTTTAAGCAAATGAAGATTATAAGGCAGGAGAGGCATACAGTTTGCTTCATTGAGTTTGAAGATGTGAATAGTGCTACAAATGTGCACCACAATCTGCAGGGTGCTGTTATCCCAAGTTCTGGTTCAATTGGCATGCGGATACAATATCCTTTTTTATTGTGGAGCATCTGA
Protein sequence

>Msa1089950

MAANGIHPYHQQWPPAAAPPPPQPTAIPSPSSEEVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFVKRGADAVAFDQSKRLRTAGDYNHTGYVTPYMAPPPPPPYDPYAGYPVAQVPMPAPVSISPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLWSI*