AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0010900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010900 MtrunA17_Chr4g0000521 92.096 291 6 2 1 274 1 291 2.40e-169 470
Msa0010900 MtrunA17_Chr8g0341911 33.607 244 147 4 35 267 20 259 2.04e-38 135
Msa0010900 MtrunA17_Chr5g0401861 35.878 262 143 9 27 267 71 328 2.32e-35 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0010900 AT3G21215.3 62.701 311 76 3 1 271 1 311 1.18e-121 350
Msa0010900 AT3G21215.2 62.866 307 74 3 1 267 1 307 5.61e-119 344
Msa0010900 AT3G21215.1 62.866 307 74 3 1 267 1 307 5.61e-119 344
Msa0010900 AT3G21215.4 62.866 307 74 3 1 267 1 307 5.61e-119 344
Msa0010900 AT2G42240.4 37.500 256 143 6 24 271 38 284 2.14e-42 147
Msa0010900 AT2G42240.1 36.905 252 142 6 24 267 38 280 7.41e-41 143
Msa0010900 AT2G42240.3 36.653 251 142 6 24 266 38 279 8.39e-40 140
Msa0010900 AT3G13700.2 32.353 272 163 6 7 267 18 279 1.10e-34 127
Msa0010900 AT3G13700.1 30.104 289 163 6 7 266 18 296 7.85e-30 114

Find 198 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTATACATTGGTATTT+AGG 0.097707 1_1:+16470810 Msa0010900:three_prime_UTR
CCTTGCAACACCCTGTTTAT+TGG 0.156343 1_1:+16469529 Msa0010900:CDS
CCAATGACTCTATAAGTCTT+TGG 0.208218 1_1:-16474048 None:intergenic
ATCGGTGATTAGAAAATTAA+TGG 0.209037 1_1:+16471080 Msa0010900:three_prime_UTR
AGAAAATTAATGGTTGAAAT+TGG 0.211039 1_1:+16471090 Msa0010900:three_prime_UTR
CTCATACTTTGCATTCAATT+TGG 0.213545 1_1:+16470303 Msa0010900:three_prime_UTR
CTTGCAACACCCTGTTTATT+GGG 0.228971 1_1:+16469530 Msa0010900:CDS
TTGAAGTTAAAACTATTTAA+AGG 0.234294 1_1:+16471282 Msa0010900:three_prime_UTR
TCTCTCTCTTTAACATCTTC+TGG 0.236900 1_1:-16467217 None:intergenic
TGGTATCTGCTTCCAACTTT+AGG 0.243384 1_1:+16470854 Msa0010900:three_prime_UTR
AGGTAAACTACCATCAAATT+TGG 0.247222 1_1:+16471430 Msa0010900:three_prime_UTR
TGGTTTCTCCATTCTGTTGT+AGG 0.248963 1_1:+16470340 Msa0010900:three_prime_UTR
AACCAATATTACTACATTAT+AGG 0.249534 1_1:+16470531 Msa0010900:three_prime_UTR
CCGGATTTACTTCAAAAGTT+AGG 0.257743 1_1:+16466957 Msa0010900:five_prime_UTR
TGGAAGACCCGTTATAAATA+TGG 0.265459 1_1:-16467197 None:intergenic
CGGCGGCGGGAGGCCATTGC+TGG 0.265928 1_1:-16467046 None:intergenic
TCTGTATACATTGGTATTTA+GGG 0.267237 1_1:+16470811 Msa0010900:three_prime_UTR
TGCTACTGCCATATTGTTGC+AGG 0.267857 1_1:+16471386 Msa0010900:three_prime_UTR
GGAGAAGTTACAACCTTATA+TGG 0.269549 1_1:+16473961 Msa0010900:three_prime_UTR
CAAATTTAGTTTATGTGAAC+TGG 0.274557 1_1:+16471023 Msa0010900:three_prime_UTR
CAATGACTCTATAAGTCTTT+GGG 0.281588 1_1:-16474047 None:intergenic
AAAGCCATTCTCACCTGAAT+TGG 0.289777 1_1:-16468471 None:intergenic
AACTAAGTATTGGTAAATTC+AGG 0.292403 1_1:+16470200 Msa0010900:three_prime_UTR
ACACTGCCACTCTCCATATA+AGG 0.293581 1_1:-16473974 None:intergenic
TGAAGCAGCCATTGAATTAT+AGG 0.297235 1_1:+16471477 Msa0010900:three_prime_UTR
AAACACCTATGAAACTAATC+TGG 0.306027 1_1:-16470711 None:intergenic
CACCCTGTTTATTGGGAACT+TGG 0.308237 1_1:+16469537 Msa0010900:CDS
TAGCAGTTATGTTCCAATTC+AGG 0.309823 1_1:+16468458 Msa0010900:CDS
TTAAGCAAATGAAGATTATA+AGG 0.318083 1_1:+16469722 Msa0010900:CDS
GTACTTTAGGCGATAAAATA+TGG 0.318453 1_1:+16471050 Msa0010900:three_prime_UTR
AACTAAGGTTTGTGTTCTAT+TGG 0.321468 1_1:+16473940 Msa0010900:three_prime_UTR
CTTCCACAAAAGGGGCTAAT+AGG 0.324527 1_1:-16474013 None:intergenic
GAAGGAATAGCGGTGGGTTG+AGG 0.329734 1_1:-16467080 None:intergenic
ATCCTATAATGTAGTAATAT+TGG 0.336175 1_1:-16470533 None:intergenic
TTTGTTTGAAATGTGCTTTA+TGG 0.336993 1_1:+16470776 Msa0010900:three_prime_UTR
ATGAGAGTGGAAAGGGTAGA+TGG 0.339157 1_1:-16470960 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.340502 1_1:-16470247 None:intergenic
AATTTACCAATACTTAGTTT+TGG 0.341755 1_1:-16470196 None:intergenic
CTCCCAAGTTCCCAATAAAC+AGG 0.342043 1_1:-16469540 None:intergenic
GGAGGAGGAGCGGCGGCGGG+AGG 0.344741 1_1:-16467056 None:intergenic
TTCTCTATTAACCCAGCATC+TGG 0.347556 1_1:+16470028 Msa0010900:three_prime_UTR
GGTGCTGTTATCCCAAGTTC+TGG 0.347584 1_1:+16469915 Msa0010900:CDS
GACAAAGCTTCCTTTCATAA+TGG 0.348216 1_1:+16471351 Msa0010900:three_prime_UTR
AATATCAGACATGCATTTAT+CGG 0.357969 1_1:+16470672 Msa0010900:three_prime_UTR
TATCAGAAATTCGTAGTCAT+AGG 0.363049 1_1:-16471503 None:intergenic
CCAAAGACTTATAGAGTCAT+TGG 0.366331 1_1:+16474048 Msa0010900:three_prime_UTR
GACGTTCCAACCAAATTTGA+TGG 0.366859 1_1:-16471440 None:intergenic
ATAGCGGTGGGTTGAGGAGG+AGG 0.368075 1_1:-16467074 None:intergenic
AGCAGATACCAATGCCTGTT+TGG 0.374337 1_1:-16470842 None:intergenic
CTAAGTATTGGTAAATTCAA+TGG 0.374747 1_1:+16470253 Msa0010900:three_prime_UTR
ATATATTGTCTGATTTATAC+AGG 0.374769 1_1:+16471318 Msa0010900:three_prime_UTR
GGTTCCCAGATTAGTTTCAT+AGG 0.376752 1_1:+16470706 Msa0010900:three_prime_UTR
AGGAGGAGGAGGAGCGGCGG+CGG 0.380056 1_1:-16467060 None:intergenic
ATCCCAAGTTCTGGTTCAAT+TGG 0.381310 1_1:+16469924 Msa0010900:CDS
GGAGGCCATTGCTGGTGGTA+AGG 0.381880 1_1:-16467038 None:intergenic
TAGTTTCATAGGTGTTTAGA+TGG 0.388607 1_1:+16470717 Msa0010900:three_prime_UTR
ACCTACCCTATGGCTGTTCC+TGG 0.389519 1_1:+16470438 Msa0010900:three_prime_UTR
CAATATGGCAGTAGCAGAAA+TGG 0.389651 1_1:-16471379 None:intergenic
TGCTGCTAAAGATATTCTTC+AGG 0.389765 1_1:+16467348 Msa0010900:CDS
GGCATTGGTACTTGTGCAAC+AGG 0.393304 1_1:-16468414 None:intergenic
TTACTTCAAAAGTTAGGGTT+AGG 0.393352 1_1:+16466963 Msa0010900:five_prime_UTR
TAAGAAAATGCTTCCACAAA+AGG 0.398319 1_1:-16474023 None:intergenic
ATAAAATATGGTGTTATAAT+CGG 0.398468 1_1:+16471062 Msa0010900:three_prime_UTR
TGGCATCATATACATTCATT+TGG 0.402096 1_1:+16470637 Msa0010900:three_prime_UTR
CGGATTTACTTCAAAAGTTA+GGG 0.402484 1_1:+16466958 Msa0010900:five_prime_UTR
ATGCCAATTGAACCAGAACT+TGG 0.417682 1_1:-16469927 None:intergenic
GACAAAATACAAGTTATATT+CGG 0.418851 1_1:-16471171 None:intergenic
TAGCTGTTCCTTTAGAACTA+AGG 0.428248 1_1:+16473925 Msa0010900:three_prime_UTR
CCAATGCCAAAACTAAGTAT+TGG 0.428339 1_1:+16470190 Msa0010900:three_prime_UTR
ATTAATGCTGTGTGATCAAA+TGG 0.429021 1_1:-16471249 None:intergenic
GGTTCGAACCATATTTATAA+CGG 0.432197 1_1:+16467189 Msa0010900:intron
TTTCAAAGCCGAAAAGCCTA+TGG 0.434501 1_1:+16467291 Msa0010900:CDS
CAGTCATAAACCCCAGATGC+TGG 0.438126 1_1:-16470040 None:intergenic
AAACTATTTAAAGGATTCTC+CGG 0.439864 1_1:+16471291 Msa0010900:three_prime_UTR
AAGAAAATGCTTCCACAAAA+GGG 0.443157 1_1:-16474022 None:intergenic
GGAATAGCGGTGGGTTGAGG+AGG 0.444814 1_1:-16467077 None:intergenic
TCAATGCCAAAACTAAGTAT+TGG 0.446988 1_1:+16470241 Msa0010900:three_prime_UTR
TAGATGGCGTTATCATTTGT+AGG 0.452371 1_1:+16470733 Msa0010900:three_prime_UTR
ACCCTGTTTATTGGGAACTT+GGG 0.453911 1_1:+16469538 Msa0010900:CDS
GTTCGAACCATATTTATAAC+GGG 0.455076 1_1:+16467190 Msa0010900:CDS
TTAGGGATGCTTATCCAAAC+AGG 0.455990 1_1:+16470828 Msa0010900:three_prime_UTR
GAGGCCATTGCTGGTGGTAA+GGG 0.456679 1_1:-16467037 None:intergenic
AACACAAACCTTAGTTCTAA+AGG 0.459146 1_1:-16473933 None:intergenic
GGATCATACGGAGGAGGAGG+TGG 0.460265 1_1:-16468378 None:intergenic
GCCATTGCTGGTGGTAAGGG+TGG 0.461353 1_1:-16467034 None:intergenic
GGAGGAGGAGGAGCGGCGGC+GGG 0.463504 1_1:-16467059 None:intergenic
CATTGCTACTGGAGCTCCAT+TGG 0.465712 1_1:-16470463 None:intergenic
AACCTTTGTCGATGGTTACC+TGG 0.465772 1_1:+16467247 Msa0010900:CDS
TCATACGGAGGAGGAGGTGG+TGG 0.465780 1_1:-16468375 None:intergenic
CAGCATCTGGGGTTTATGAC+TGG 0.465788 1_1:+16470041 Msa0010900:three_prime_UTR
AATTTGGTTGGAACGTCTGT+TGG 0.467457 1_1:+16471446 Msa0010900:three_prime_UTR
GGAACAGCTAGTGGCGTTTG+AGG 0.470913 1_1:-16473912 None:intergenic
GCTGGGGATTATAATCATAC+TGG 0.472133 1_1:+16467984 Msa0010900:CDS
ATCTTCATTTGCTTAAAGCC+AGG 0.474830 1_1:-16469715 None:intergenic
AAACTACCATCAAATTTGGT+TGG 0.478622 1_1:+16471434 Msa0010900:three_prime_UTR
ATGACTTATCAGTAGCTTGA+AGG 0.479145 1_1:+16470483 Msa0010900:three_prime_UTR
AGTAAACGGTTACGAACAGC+TGG 0.481756 1_1:+16467966 Msa0010900:CDS
GCAACAGGATAGCCTGCATA+TGG 0.482662 1_1:-16468399 None:intergenic
GTGGTAAGGGTGGATGCCGT+TGG 0.484200 1_1:-16467024 None:intergenic
ATGGCTGTTCCTGGTGCCAA+TGG 0.485478 1_1:+16470447 Msa0010900:three_prime_UTR
CATTTATCGGCAGCATGTGT+TGG 0.485795 1_1:+16470685 Msa0010900:three_prime_UTR
TACTGATAAGTCATTGCTAC+TGG 0.489556 1_1:-16470474 None:intergenic
CCGATGTGAAACGACATTAG+AGG 0.498201 1_1:+16473851 Msa0010900:three_prime_UTR
ACTAAGTATTGGTAAATTCA+GGG 0.498341 1_1:+16470201 Msa0010900:three_prime_UTR
ACAACACATGAACCTAAAGT+TGG 0.498571 1_1:-16470866 None:intergenic
TCTCTATTAACCCAGCATCT+GGG 0.500261 1_1:+16470029 Msa0010900:three_prime_UTR
GCAAATGAAGATTATAAGGC+AGG 0.500307 1_1:+16469726 Msa0010900:CDS
CAAAGACTTATAGAGTCATT+GGG 0.502530 1_1:+16474049 Msa0010900:three_prime_UTR
TTCTCAAGTTCAAGTTCAAG+TGG 0.502586 1_1:-16466914 None:intergenic
AATGATAATGAGAGTGGAAA+GGG 0.506100 1_1:-16470967 None:intergenic
ATGCTTATCCAAACAGGCAT+TGG 0.507705 1_1:+16470834 Msa0010900:three_prime_UTR
GGCGATGACTTGATAATCAA+TGG 0.515826 1_1:-16470580 None:intergenic
AAATTTAGTTTATGTGAACT+GGG 0.516314 1_1:+16471024 Msa0010900:three_prime_UTR
ATTTGGTATAAAACTGCTTG+TGG 0.517696 1_1:+16470320 Msa0010900:three_prime_UTR
AAATGTGCACCACAATCTGC+AGG 0.517804 1_1:+16469893 Msa0010900:CDS
GCTTTGTAATGCAGACAACC+TGG 0.519392 1_1:+16469697 Msa0010900:intron
AGTACTACCTCTTCGGAAGA+AGG 0.521807 1_1:-16467104 None:intergenic
CTCTATTAACCCAGCATCTG+GGG 0.521963 1_1:+16470030 Msa0010900:three_prime_UTR
GCGGTGGGTTGAGGAGGAGG+AGG 0.522344 1_1:-16467071 None:intergenic
CGGCGGGAGGCCATTGCTGG+TGG 0.524594 1_1:-16467043 None:intergenic
ATCAGAAATTCGTAGTCATA+GGG 0.525268 1_1:-16471502 None:intergenic
GGTGAGATAGACACAGGAGC+AGG 0.526097 1_1:-16468435 None:intergenic
TCTCCATTCTGTTGTAGGCA+AGG 0.527422 1_1:+16470345 Msa0010900:three_prime_UTR
TGAAGGAAGTACTACCTCTT+CGG 0.528081 1_1:-16467111 None:intergenic
TTGGCACCAGGAACAGCCAT+AGG 0.533854 1_1:-16470444 None:intergenic
TGACTTATCAGTAGCTTGAA+GGG 0.534994 1_1:+16470484 Msa0010900:three_prime_UTR
CAAATGGAGTCATGAATGCC+AGG 0.537483 1_1:-16471233 None:intergenic
GTCTTCTAAAGTACACTCCC+AGG 0.538418 1_1:+16471191 Msa0010900:three_prime_UTR
TCCACCCTTACCACCAGCAA+TGG 0.538447 1_1:+16467033 Msa0010900:CDS
AACTTCAAAACCTTTGTCGA+TGG 0.541598 1_1:+16467239 Msa0010900:CDS
ATAGGGCACCTATAATTCAA+TGG 0.545368 1_1:-16471485 None:intergenic
TGAAGAACAGATTTAGCCTC+GGG 0.546026 1_1:-16467385 None:intergenic
TCCTTCTCCTTCTTCCGAAG+AGG 0.546449 1_1:+16467097 Msa0010900:CDS
AAGCTTCCTTTCATAATGGA+AGG 0.546475 1_1:+16471355 Msa0010900:three_prime_UTR
TAGCCTGCATATGGATCATA+CGG 0.548541 1_1:-16468390 None:intergenic
TAAACAGGGTGTTGCAAGGA+GGG 0.548723 1_1:-16469525 None:intergenic
AACATGAGCAGTGATGATAA+TGG 0.551137 1_1:-16470601 None:intergenic
AGCATCTGGGGTTTATGACT+GGG 0.552350 1_1:+16470042 Msa0010900:three_prime_UTR
AACTGAGAAGCTTCAAAACC+AGG 0.556577 1_1:-16467265 None:intergenic
TTCAAAGCCGAAAAGCCTAT+GGG 0.558458 1_1:+16467292 Msa0010900:CDS
CCTCCGTATGATCCATATGC+AGG 0.559113 1_1:+16468387 Msa0010900:CDS
ATTCCTTGCCTACAACAGAA+TGG 0.560024 1_1:-16470348 None:intergenic
CATTAGAGGCTATTAAAGAA+AGG 0.560405 1_1:+16473865 Msa0010900:three_prime_UTR
ATCTGTTCTTCATACTGAGA+TGG 0.561919 1_1:+16467396 Msa0010900:CDS
GAAGGAGAAGGAATAGCGGT+GGG 0.564113 1_1:-16467086 None:intergenic
AAAAGATGGAACCTACCCTA+TGG 0.564455 1_1:+16470428 Msa0010900:three_prime_UTR
AACACCTATGAAACTAATCT+GGG 0.566767 1_1:-16470710 None:intergenic
GATTCATTCATGGCAGCCAA+CGG 0.570409 1_1:+16467008 Msa0010900:exon
TAACAGCACCCTGCAGATTG+TGG 0.570755 1_1:-16469902 None:intergenic
CATTAATGAGGAAGAAGTGA+GGG 0.575202 1_1:+16469567 Msa0010900:CDS
ATGAAGAACAGATTTAGCCT+CGG 0.577945 1_1:-16467386 None:intergenic
AATGGACCTTCCATTATGAA+AGG 0.578687 1_1:-16471361 None:intergenic
AGTCATAAACCCCAGATGCT+GGG 0.579970 1_1:-16470039 None:intergenic
TATGGATCATACGGAGGAGG+AGG 0.580137 1_1:-16468381 None:intergenic
ATAGACACAGGAGCAGGCAT+TGG 0.580929 1_1:-16468429 None:intergenic
CAATGATAATGAGAGTGGAA+AGG 0.592019 1_1:-16470968 None:intergenic
AATGACAATGATAATGAGAG+TGG 0.596480 1_1:-16470973 None:intergenic
AATCAGACAATATATAACTC+CGG 0.598244 1_1:-16471310 None:intergenic
TGAATTGGAACATAACTGCT+AGG 0.602093 1_1:-16468456 None:intergenic
ACCTCTTCGGAAGAAGGAGA+AGG 0.602484 1_1:-16467098 None:intergenic
ACAGCTAGTGGCGTTTGAGG+TGG 0.602799 1_1:-16473909 None:intergenic
ATTTAGTTTATGTGAACTGG+GGG 0.602858 1_1:+16471026 Msa0010900:three_prime_UTR
CCAATAAACAGGGTGTTGCA+AGG 0.603873 1_1:-16469529 None:intergenic
ACTGGAGCTCCATTGGCACC+AGG 0.605650 1_1:-16470456 None:intergenic
CTTGGGAGAGAACATTAATG+AGG 0.606113 1_1:+16469555 Msa0010900:CDS
GCATATGGATCATACGGAGG+AGG 0.606969 1_1:-16468384 None:intergenic
TGAAGATTATAAGGCAGGAG+AGG 0.609049 1_1:+16469731 Msa0010900:CDS
TGCCAATTGAACCAGAACTT+GGG 0.610282 1_1:-16469926 None:intergenic
AGTTCTAAAGGAACAGCTAG+TGG 0.610897 1_1:-16473921 None:intergenic
AATTTAGTTTATGTGAACTG+GGG 0.610923 1_1:+16471025 Msa0010900:three_prime_UTR
GACTTATCAGTAGCTTGAAG+GGG 0.615446 1_1:+16470485 Msa0010900:three_prime_UTR
TGGCACCAGGAACAGCCATA+GGG 0.617677 1_1:-16470443 None:intergenic
AGAAAATGCTTCCACAAAAG+GGG 0.620217 1_1:-16474021 None:intergenic
TTGAAGAGAGCAAAACCCAT+AGG 0.622823 1_1:-16467307 None:intergenic
TTAGCAGCAATAGCTTGATG+AGG 0.625830 1_1:-16467334 None:intergenic
TATATTGTCTGATTTATACA+GGG 0.645169 1_1:+16471319 Msa0010900:three_prime_UTR
AATGACTCTATAAGTCTTTG+GGG 0.646712 1_1:-16474046 None:intergenic
ACATTAATGAGGAAGAAGTG+AGG 0.646735 1_1:+16469566 Msa0010900:CDS
AGAAGGAGAAGGAATAGCGG+TGG 0.646815 1_1:-16467087 None:intergenic
AAACAAATGAAAGAAACTCA+CGG 0.653052 1_1:-16470154 None:intergenic
TTACAACCTTATATGGAGAG+TGG 0.656010 1_1:+16473968 Msa0010900:three_prime_UTR
AAATGGAGTCATGAATGCCA+GGG 0.656673 1_1:-16471232 None:intergenic
CCTCTAATGTCGTTTCACAT+CGG 0.664600 1_1:-16473851 None:intergenic
TGTTTAGAGTAAAACGACAC+CGG 0.666550 1_1:+16466938 Msa0010900:five_prime_UTR
AACCAGGTAACCATCGACAA+AGG 0.666576 1_1:-16467249 None:intergenic
TCCCAAGTTCCCAATAAACA+GGG 0.668529 1_1:-16469539 None:intergenic
GTTCTGGTTCAATTGGCATG+CGG 0.674324 1_1:+16469931 Msa0010900:CDS
AATGTGCACCACAATCTGCA+GGG 0.681242 1_1:+16469894 Msa0010900:CDS
GTAAACGGTTACGAACAGCT+GGG 0.684153 1_1:+16467967 Msa0010900:CDS
TAAACGGTTACGAACAGCTG+GGG 0.691927 1_1:+16467968 Msa0010900:CDS
TGGAGTCATGAATGCCAGGG+TGG 0.694151 1_1:-16471229 None:intergenic
CTGCTAGGTGAGATAGACAC+AGG 0.695547 1_1:-16468441 None:intergenic
ATAAACAGGGTGTTGCAAGG+AGG 0.695618 1_1:-16469526 None:intergenic
ACCAGGAACAGCCATAGGGT+AGG 0.709355 1_1:-16470439 None:intergenic
ATTAATGAGGAAGAAGTGAG+GGG 0.716298 1_1:+16469568 Msa0010900:CDS
GGAAGAAGGAGAAGGAATAG+CGG 0.729192 1_1:-16467090 None:intergenic
CCTGCATATGGATCATACGG+AGG 0.734736 1_1:-16468387 None:intergenic
TCATGTTAATGAATGCACAG+TGG 0.853491 1_1:+16470617 Msa0010900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATTTAAGAGTTTA+AGG + chr1_1:16471994-16472013 Msa0010900:intron 10.0%
!!! AATAAGTAAATTTTTTTTGT+AGG + chr1_1:16472054-16472073 Msa0010900:intron 10.0%
!!! ATAAGTAAATTTTTTTTGTA+GGG + chr1_1:16472055-16472074 Msa0010900:intron 10.0%
!! TTAAAAATGCTATTAAAATT+AGG + chr1_1:16472079-16472098 Msa0010900:intron 10.0%
!!! ACATTTTAATATTTAGTTTT+TGG + chr1_1:16472323-16472342 Msa0010900:intron 10.0%
!!! CATTTTAATATTTAGTTTTT+GGG + chr1_1:16472324-16472343 Msa0010900:intron 10.0%
!! TTTAAATTAATAAATTTCTC+CGG - chr1_1:16472895-16472914 None:intergenic 10.0%
!!! TTATTAATTTATGATTTTCT+TGG + chr1_1:16473180-16473199 Msa0010900:intron 10.0%
!!! TATTAATTTATGATTTTCTT+GGG + chr1_1:16473181-16473200 Msa0010900:intron 10.0%
!!! TAATAAGATAATAATTTTTC+GGG - chr1_1:16473229-16473248 None:intergenic 10.0%
!!! AAAATGAATAATTTTTCTTA+TGG - chr1_1:16474100-16474119 None:intergenic 10.0%
!!! TCAATTTTTATTCAATTATG+TGG + chr1_1:16467474-16467493 Msa0010900:intron 15.0%
!!! CTTATTTTGATTTTTTTTGT+AGG + chr1_1:16467912-16467931 Msa0010900:intron 15.0%
!! GAAAAAATATGATGTTTAAA+GGG + chr1_1:16469309-16469328 Msa0010900:intron 15.0%
!! TCATTGATAAACAATATTAA+CGG - chr1_1:16469448-16469467 None:intergenic 15.0%
!! ATAAACTAAATTTGAAAAAC+AGG - chr1_1:16471017-16471036 None:intergenic 15.0%
!!! ATAAAATATGGTGTTATAAT+CGG + chr1_1:16471062-16471081 Msa0010900:three_prime_UTR 15.0%
!! TTGAAGTTAAAACTATTTAA+AGG + chr1_1:16471282-16471301 Msa0010900:three_prime_UTR 15.0%
!!! CAAAAAAAACTAACATTTTT+CGG - chr1_1:16471531-16471550 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr1_1:16471672-16471691 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr1_1:16471744-16471763 None:intergenic 15.0%
!!! AATTTTTGCGATATTTTTTT+TGG - chr1_1:16471828-16471847 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr1_1:16471863-16471882 None:intergenic 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr1_1:16472022-16472041 Msa0010900:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr1_1:16472023-16472042 Msa0010900:intron 15.0%
!! AAAAAAAAAAAATCAACTTG+AGG + chr1_1:16472600-16472619 Msa0010900:intron 15.0%
!! TTCTATAAATTAATAATGTC+AGG + chr1_1:16472868-16472887 Msa0010900:intron 15.0%
!!! TCTAAAATAATAAATTTGTC+TGG - chr1_1:16473295-16473314 None:intergenic 15.0%
!!! AAACTCTTTAATTTAATACT+CGG - chr1_1:16473333-16473352 None:intergenic 15.0%
!!! AATTCAATTATGCTTTTTTC+AGG + chr1_1:16467168-16467187 Msa0010900:intron 20.0%
!!! TTTAAAATAATCACATGTGT+CGG - chr1_1:16467631-16467650 None:intergenic 20.0%
!! TTTAGACTAAATTATGGTAT+TGG + chr1_1:16467758-16467777 Msa0010900:intron 20.0%
!!! TTGATTTTTTTTGTAGGAAT+AGG + chr1_1:16467918-16467937 Msa0010900:intron 20.0%
!! CAAACTTTCAGTTAATAATA+TGG - chr1_1:16468327-16468346 None:intergenic 20.0%
!!! TGAAAGTTTGTTTGTTTTTA+TGG + chr1_1:16468337-16468356 Msa0010900:intron 20.0%
!! GGAAAAAATATGATGTTTAA+AGG + chr1_1:16469308-16469327 Msa0010900:intron 20.0%
!! TTAAGCAAATGAAGATTATA+AGG + chr1_1:16469722-16469741 Msa0010900:CDS 20.0%
!!! TACAATATCCTTTTTTATTG+TGG + chr1_1:16469955-16469974 Msa0010900:CDS 20.0%
!!! TCTTTCATTTGTTTTTTCAA+TGG + chr1_1:16470163-16470182 Msa0010900:three_prime_UTR 20.0%
!!! AATTTACCAATACTTAGTTT+TGG - chr1_1:16470199-16470218 None:intergenic 20.0%
!!! TTTTGGCATTGAAAAATATA+AGG - chr1_1:16470233-16470252 None:intergenic 20.0%
!!! AATTTACCAATACTTAGTTT+TGG - chr1_1:16470199-16470218 None:intergenic 20.0%
!! AACCAATATTACTACATTAT+AGG + chr1_1:16470531-16470550 Msa0010900:three_prime_UTR 20.0%
!! ATCCTATAATGTAGTAATAT+TGG - chr1_1:16470536-16470555 None:intergenic 20.0%
!!! AAATTTAGTTTATGTGAACT+GGG + chr1_1:16471024-16471043 Msa0010900:three_prime_UTR 20.0%
!! AGAAAATTAATGGTTGAAAT+TGG + chr1_1:16471090-16471109 Msa0010900:three_prime_UTR 20.0%
!! GACAAAATACAAGTTATATT+CGG - chr1_1:16471174-16471193 None:intergenic 20.0%
!! ATATATTGTCTGATTTATAC+AGG + chr1_1:16471318-16471337 Msa0010900:three_prime_UTR 20.0%
!! TATATTGTCTGATTTATACA+GGG + chr1_1:16471319-16471338 Msa0010900:three_prime_UTR 20.0%
!!! TTAGTTTTTTTTGCAAGAAT+TGG + chr1_1:16471538-16471557 Msa0010900:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG + chr1_1:16471774-16471793 Msa0010900:intron 20.0%
!! AATGCTATTAAAATTAGGTA+AGG + chr1_1:16472084-16472103 Msa0010900:intron 20.0%
!!! TAATGGGTTAATTATGTTTT+TGG - chr1_1:16472142-16472161 None:intergenic 20.0%
!! CTAATGTAAGATAAAATGTT+GGG - chr1_1:16472527-16472546 None:intergenic 20.0%
!! ACTAATGTAAGATAAAATGT+TGG - chr1_1:16472528-16472547 None:intergenic 20.0%
!!! TTTTATCTTACATTAGTGAA+TGG + chr1_1:16472531-16472550 Msa0010900:intron 20.0%
!! TATATAGTTATATTAGCATG+TGG + chr1_1:16472690-16472709 Msa0010900:intron 20.0%
!! TATGTTATTCTCACTTAATT+AGG + chr1_1:16473749-16473768 Msa0010900:intron 20.0%
!! TAGCCTAAATATATATATGA+TGG + chr1_1:16473790-16473809 Msa0010900:intron 20.0%
!! CAACCATCATATATATATTT+AGG - chr1_1:16473796-16473815 None:intergenic 20.0%
!!! TGTGAATTTTGATTCATTCA+TGG + chr1_1:16466998-16467017 Msa0010900:exon 25.0%
! AATAAATAGAAGAAGAGTGA+AGG - chr1_1:16467131-16467150 None:intergenic 25.0%
! AAAAATCTCTTTGTTAAACG+AGG + chr1_1:16467424-16467443 Msa0010900:CDS 25.0%
!!! TTGCTTTTGATCAAAGTAAA+CGG + chr1_1:16467952-16467971 Msa0010900:CDS 25.0%
! AAAACAATGTTGTCAAATAG+TGG + chr1_1:16468118-16468137 Msa0010900:intron 25.0%
!! GTTTTTATGGTCTAGATATA+TGG + chr1_1:16468350-16468369 Msa0010900:intron 25.0%
!! TTAAACTGTTAATGCTACTT+TGG + chr1_1:16468492-16468511 Msa0010900:intron 25.0%
! AAAGTTGGAGTAATTATTGA+GGG - chr1_1:16468768-16468787 None:intergenic 25.0%
! AAAAGTTGGAGTAATTATTG+AGG - chr1_1:16468769-16468788 None:intergenic 25.0%
! TGTCTTTCTCTAATAAAGTA+AGG + chr1_1:16468819-16468838 Msa0010900:intron 25.0%
! GTCTTTCTCTAATAAAGTAA+GGG + chr1_1:16468820-16468839 Msa0010900:intron 25.0%
! ATCAATTTCTAACAGTTGAA+TGG - chr1_1:16469005-16469024 None:intergenic 25.0%
!!! TCTATTTTAACTACCAAAGA+AGG + chr1_1:16469217-16469236 Msa0010900:intron 25.0%
!!! AACATCATATTTTTTCCAGT+AGG - chr1_1:16469305-16469324 None:intergenic 25.0%
! GATTAATCCAATATATGACA+CGG - chr1_1:16469666-16469685 None:intergenic 25.0%
! ATGAAAAATACATGGTAAGT+TGG - chr1_1:16470120-16470139 None:intergenic 25.0%
! TATCAGTGATGAAAAATACA+TGG - chr1_1:16470128-16470147 None:intergenic 25.0%
! AAACAAATGAAAGAAACTCA+CGG - chr1_1:16470157-16470176 None:intergenic 25.0%
!!! AACTAAGTATTGGTAAATTC+AGG + chr1_1:16470200-16470219 Msa0010900:three_prime_UTR 25.0%
!!! ACTAAGTATTGGTAAATTCA+GGG + chr1_1:16470201-16470220 Msa0010900:three_prime_UTR 25.0%
!!! CTAAGTATTGGTAAATTCAA+TGG + chr1_1:16470253-16470272 Msa0010900:three_prime_UTR 25.0%
! AGATATTCCAAAAATCCATT+TGG + chr1_1:16470399-16470418 Msa0010900:three_prime_UTR 25.0%
!!! TCTTTTTCCAAATGGATTTT+TGG - chr1_1:16470409-16470428 None:intergenic 25.0%
! AATATCAGACATGCATTTAT+CGG + chr1_1:16470672-16470691 Msa0010900:three_prime_UTR 25.0%
!! TTTGTTTGAAATGTGCTTTA+TGG + chr1_1:16470776-16470795 Msa0010900:three_prime_UTR 25.0%
!! TTAGACTTTTCTGTATACAT+TGG + chr1_1:16470802-16470821 Msa0010900:three_prime_UTR 25.0%
! TTCTGTATACATTGGTATTT+AGG + chr1_1:16470810-16470829 Msa0010900:three_prime_UTR 25.0%
! TCTGTATACATTGGTATTTA+GGG + chr1_1:16470811-16470830 Msa0010900:three_prime_UTR 25.0%
!!! TGATGCTTTCTTTATTTTCA+TGG + chr1_1:16470912-16470931 Msa0010900:three_prime_UTR 25.0%
! AACTAAATTTGAAAAACAGG+AGG - chr1_1:16471014-16471033 None:intergenic 25.0%
!! CAAATTTAGTTTATGTGAAC+TGG + chr1_1:16471023-16471042 Msa0010900:three_prime_UTR 25.0%
!! AATTTAGTTTATGTGAACTG+GGG + chr1_1:16471025-16471044 Msa0010900:three_prime_UTR 25.0%
! ATCGGTGATTAGAAAATTAA+TGG + chr1_1:16471080-16471099 Msa0010900:three_prime_UTR 25.0%
! AAACTATTTAAAGGATTCTC+CGG + chr1_1:16471291-16471310 Msa0010900:three_prime_UTR 25.0%
! AATCAGACAATATATAACTC+CGG - chr1_1:16471313-16471332 None:intergenic 25.0%
!!! GAGTGCAAATTTTTTTTGTA+GGG - chr1_1:16471701-16471720 None:intergenic 25.0%
!!! TGAGTGCAAATTTTTTTTGT+AGG - chr1_1:16471702-16471721 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr1_1:16471733-16471752 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG + chr1_1:16471798-16471817 Msa0010900:intron 25.0%
!!! TTTTGCGATATTTTTTTTGG+AGG - chr1_1:16471825-16471844 None:intergenic 25.0%
! TTAACCCATTATAATACACT+AGG + chr1_1:16472151-16472170 Msa0010900:intron 25.0%
! TAACCCATTATAATACACTA+GGG + chr1_1:16472152-16472171 Msa0010900:intron 25.0%
!! AGTTTAAAATCATTGATAGC+AGG - chr1_1:16472241-16472260 None:intergenic 25.0%
! AAACAAGTTAGAACAGTTTA+TGG - chr1_1:16472363-16472382 None:intergenic 25.0%
! TATAACTGCTTATATTGCAT+TGG - chr1_1:16472674-16472693 None:intergenic 25.0%
! TAAATTAATAATGTCAGGAC+CGG + chr1_1:16472873-16472892 Msa0010900:intron 25.0%
! TTGGGACTGAAAATTATAAA+AGG + chr1_1:16473199-16473218 Msa0010900:intron 25.0%
! TAATTTACCCTGATATACAT+GGG - chr1_1:16473537-16473556 None:intergenic 25.0%
!!! TTTTAAGTAAATCTTAGCGA+AGG - chr1_1:16473566-16473585 None:intergenic 25.0%
!!! TCAGTTGAAAGGTTTTTTAT+GGG - chr1_1:16473626-16473645 None:intergenic 25.0%
!!! TTCAGTTGAAAGGTTTTTTA+TGG - chr1_1:16473627-16473646 None:intergenic 25.0%
!! AAAATGTTGATTACCAAAAC+AGG + chr1_1:16473828-16473847 Msa0010900:intron 25.0%
!!! CCTAACTTTTGAAGTAAATC+CGG - chr1_1:16466960-16466979 None:intergenic 30.0%
CGGATTTACTTCAAAAGTTA+GGG + chr1_1:16466958-16466977 Msa0010900:five_prime_UTR 30.0%
TTACTTCAAAAGTTAGGGTT+AGG + chr1_1:16466963-16466982 Msa0010900:five_prime_UTR 30.0%
GGTTCGAACCATATTTATAA+CGG + chr1_1:16467189-16467208 Msa0010900:intron 30.0%
GTTCGAACCATATTTATAAC+GGG + chr1_1:16467190-16467209 Msa0010900:CDS 30.0%
CGGTGATTTAGACTAAATTA+TGG + chr1_1:16467752-16467771 Msa0010900:intron 30.0%
TTTGAATTCGGAGTTAAGTT+TGG - chr1_1:16467853-16467872 None:intergenic 30.0%
! TGTTGTGAAATAGTTGCTTT+AGG + chr1_1:16468203-16468222 Msa0010900:intron 30.0%
! GTTGTGAAATAGTTGCTTTA+GGG + chr1_1:16468204-16468223 Msa0010900:intron 30.0%
! TTGTGAAATAGTTGCTTTAG+GGG + chr1_1:16468205-16468224 Msa0010900:intron 30.0%
GCTCGTGATTTATAAAGATA+AGG + chr1_1:16468571-16468590 Msa0010900:intron 30.0%
CGTGATTTATAAAGATAAGG+CGG + chr1_1:16468574-16468593 Msa0010900:intron 30.0%
ATTACAGAGCTTATAGCTAA+CGG - chr1_1:16468614-16468633 None:intergenic 30.0%
AAGTGACACTCATTATGAAA+CGG - chr1_1:16468668-16468687 None:intergenic 30.0%
!! TTCATAATGAGTGTCACTTT+AGG + chr1_1:16468669-16468688 Msa0010900:intron 30.0%
!! TCATAATGAGTGTCACTTTA+GGG + chr1_1:16468670-16468689 Msa0010900:intron 30.0%
! GAAAATTCTGAGAGAAAAGT+TGG - chr1_1:16468783-16468802 None:intergenic 30.0%
TTGGCACATAGATTAAGAAA+TGG - chr1_1:16468885-16468904 None:intergenic 30.0%
TCTTAATCTATGTGCCAAAA+TGG + chr1_1:16468887-16468906 Msa0010900:intron 30.0%
ATTGTATCTCAAAGTGAATG+TGG + chr1_1:16469100-16469119 Msa0010900:intron 30.0%
TTGTATCTCAAAGTGAATGT+GGG + chr1_1:16469101-16469120 Msa0010900:intron 30.0%
!!! AGCATTTGTCTTTGTTTTGT+CGG + chr1_1:16469130-16469149 Msa0010900:intron 30.0%
CTTAATTGCTATATTCTGCT+TGG + chr1_1:16469165-16469184 Msa0010900:intron 30.0%
ACATTCATTCAGCAATTTAG+AGG - chr1_1:16469263-16469282 None:intergenic 30.0%
GTTCGAAGTATATTCATAGT+TGG + chr1_1:16469351-16469370 Msa0010900:intron 30.0%
TCACTGCATGATAATAACTA+AGG - chr1_1:16469382-16469401 None:intergenic 30.0%
! GTTTTACATACACACTGAAA+AGG - chr1_1:16469594-16469613 None:intergenic 30.0%
TTGGATTAATCTGTTGAACT+TGG + chr1_1:16469675-16469694 Msa0010900:intron 30.0%
! TATTTGTGCCTTTTATTGTC+TGG + chr1_1:16469799-16469818 Msa0010900:intron 30.0%
GAAAAGATCCAGACAATAAA+AGG - chr1_1:16469810-16469829 None:intergenic 30.0%
CTTATGTTTACGCTAATACT+TGG + chr1_1:16469833-16469852 Msa0010900:intron 30.0%
! GTATTTTTCATCACTGATAC+TGG + chr1_1:16470129-16470148 Msa0010900:three_prime_UTR 30.0%
TCAATGCCAAAACTAAGTAT+TGG + chr1_1:16470241-16470260 Msa0010900:three_prime_UTR 30.0%
CTCATACTTTGCATTCAATT+TGG + chr1_1:16470303-16470322 Msa0010900:three_prime_UTR 30.0%
ATTTGGTATAAAACTGCTTG+TGG + chr1_1:16470320-16470339 Msa0010900:three_prime_UTR 30.0%
! CCATCTTTTCTTTTTCCAAA+TGG - chr1_1:16470417-16470436 None:intergenic 30.0%
CCATTTGGAAAAAGAAAAGA+TGG + chr1_1:16470414-16470433 Msa0010900:three_prime_UTR 30.0%
TGGCATCATATACATTCATT+TGG + chr1_1:16470637-16470656 Msa0010900:three_prime_UTR 30.0%
AACACCTATGAAACTAATCT+GGG - chr1_1:16470713-16470732 None:intergenic 30.0%
AAACACCTATGAAACTAATC+TGG - chr1_1:16470714-16470733 None:intergenic 30.0%
TAGTTTCATAGGTGTTTAGA+TGG + chr1_1:16470717-16470736 Msa0010900:three_prime_UTR 30.0%
!!! CTTTCTTTATTTTCATGGCA+TGG + chr1_1:16470917-16470936 Msa0010900:three_prime_UTR 30.0%
! AATGATAATGAGAGTGGAAA+GGG - chr1_1:16470970-16470989 None:intergenic 30.0%
! AATGACAATGATAATGAGAG+TGG - chr1_1:16470976-16470995 None:intergenic 30.0%
! ATTTAGTTTATGTGAACTGG+GGG + chr1_1:16471026-16471045 Msa0010900:three_prime_UTR 30.0%
GTACTTTAGGCGATAAAATA+TGG + chr1_1:16471050-16471069 Msa0010900:three_prime_UTR 30.0%
ATTAATGCTGTGTGATCAAA+TGG - chr1_1:16471252-16471271 None:intergenic 30.0%
AAAAATCACCTGCAACAATA+TGG - chr1_1:16471397-16471416 None:intergenic 30.0%
AGGTAAACTACCATCAAATT+TGG + chr1_1:16471430-16471449 Msa0010900:three_prime_UTR 30.0%
AAACTACCATCAAATTTGGT+TGG + chr1_1:16471434-16471453 Msa0010900:three_prime_UTR 30.0%
ATCAGAAATTCGTAGTCATA+GGG - chr1_1:16471505-16471524 None:intergenic 30.0%
TATCAGAAATTCGTAGTCAT+AGG - chr1_1:16471506-16471525 None:intergenic 30.0%
ACTGGTAGGCTAATTATAAT+AGG + chr1_1:16471597-16471616 Msa0010900:intron 30.0%
CTGGTAGGCTAATTATAATA+GGG + chr1_1:16471598-16471617 Msa0010900:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG - chr1_1:16471657-16471676 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr1_1:16471960-16471979 None:intergenic 30.0%
AACCCATTATAATACACTAG+GGG + chr1_1:16472153-16472172 Msa0010900:intron 30.0%
ATCCCCTAGTGTATTATAAT+GGG - chr1_1:16472158-16472177 None:intergenic 30.0%
TATCCCCTAGTGTATTATAA+TGG - chr1_1:16472159-16472178 None:intergenic 30.0%
!!! TGCCATCATTTTTTTTGGAT+GGG + chr1_1:16472205-16472224 Msa0010900:intron 30.0%
!! TAGTTTTTGGGCATTAAATG+AGG + chr1_1:16472336-16472355 Msa0010900:intron 30.0%
!! AGTTTTTGGGCATTAAATGA+GGG + chr1_1:16472337-16472356 Msa0010900:intron 30.0%
CAAATGAAAGAATTGAACAC+TGG - chr1_1:16472426-16472445 None:intergenic 30.0%
TCTAAACTATGTCTTGAAAG+TGG + chr1_1:16472470-16472489 Msa0010900:intron 30.0%
GAATGGTTCATTACTCAAAT+TGG + chr1_1:16472548-16472567 Msa0010900:intron 30.0%
! TCTAACACTCACTCTTTTAT+TGG + chr1_1:16472822-16472841 Msa0010900:intron 30.0%
! CTAACACTCACTCTTTTATT+GGG + chr1_1:16472823-16472842 Msa0010900:intron 30.0%
ACTGTACATACCAAACAAAA+AGG + chr1_1:16472975-16472994 Msa0010900:intron 30.0%
!! GACTAATTTGCCTTTTTGTT+TGG - chr1_1:16472988-16473007 None:intergenic 30.0%
TTATTGAGTGGTATCAATGT+AGG - chr1_1:16473405-16473424 None:intergenic 30.0%
ACTTGGGAGATAAATATATC+AGG - chr1_1:16473476-16473495 None:intergenic 30.0%
AAGTCAAGTTCAGTTCAATT+GGG - chr1_1:16473499-16473518 None:intergenic 30.0%
AAGATAAACCCATGTATATC+AGG + chr1_1:16473526-16473545 Msa0010900:intron 30.0%
AGATAAACCCATGTATATCA+GGG + chr1_1:16473527-16473546 Msa0010900:intron 30.0%
GTAATTTACCCTGATATACA+TGG - chr1_1:16473538-16473557 None:intergenic 30.0%
TGCTTGCTTACAAAATTTAG+AGG - chr1_1:16473596-16473615 None:intergenic 30.0%
ACAAACAATGTTCAGTTGAA+AGG - chr1_1:16473637-16473656 None:intergenic 30.0%
TCTAAACCTAAAAGGACAAA+CGG - chr1_1:16473685-16473704 None:intergenic 30.0%
CATTAGAGGCTATTAAAGAA+AGG + chr1_1:16473865-16473884 Msa0010900:three_prime_UTR 30.0%
!! AACACAAACCTTAGTTCTAA+AGG - chr1_1:16473936-16473955 None:intergenic 30.0%
AACTAAGGTTTGTGTTCTAT+TGG + chr1_1:16473940-16473959 Msa0010900:three_prime_UTR 30.0%
AAGAAAATGCTTCCACAAAA+GGG - chr1_1:16474025-16474044 None:intergenic 30.0%
TAAGAAAATGCTTCCACAAA+AGG - chr1_1:16474026-16474045 None:intergenic 30.0%
AATGACTCTATAAGTCTTTG+GGG - chr1_1:16474049-16474068 None:intergenic 30.0%
CAATGACTCTATAAGTCTTT+GGG - chr1_1:16474050-16474069 None:intergenic 30.0%
CAAAGACTTATAGAGTCATT+GGG + chr1_1:16474049-16474068 Msa0010900:three_prime_UTR 30.0%
! TTCTCAAGTTCAAGTTCAAG+TGG - chr1_1:16466917-16466936 None:intergenic 35.0%
! TGTTTAGAGTAAAACGACAC+CGG + chr1_1:16466938-16466957 Msa0010900:five_prime_UTR 35.0%
CCGGATTTACTTCAAAAGTT+AGG + chr1_1:16466957-16466976 Msa0010900:five_prime_UTR 35.0%
TGGAAGACCCGTTATAAATA+TGG - chr1_1:16467200-16467219 None:intergenic 35.0%
TCTCTCTCTTTAACATCTTC+TGG - chr1_1:16467220-16467239 None:intergenic 35.0%
AACTTCAAAACCTTTGTCGA+TGG + chr1_1:16467239-16467258 Msa0010900:CDS 35.0%
TGCTGCTAAAGATATTCTTC+AGG + chr1_1:16467348-16467367 Msa0010900:CDS 35.0%
ATGAAGAACAGATTTAGCCT+CGG - chr1_1:16467389-16467408 None:intergenic 35.0%
ATCTGTTCTTCATACTGAGA+TGG + chr1_1:16467396-16467415 Msa0010900:CDS 35.0%
TTATGTGTCTGTGTCATGTT+TGG + chr1_1:16467674-16467693 Msa0010900:intron 35.0%
TCAACTATGAATCACGTACA+AGG - chr1_1:16467703-16467722 None:intergenic 35.0%
TCTCACAATAAGTGCATGTT+TGG + chr1_1:16467724-16467743 Msa0010900:intron 35.0%
! TAAGTGCATGTTTGGAATGA+CGG + chr1_1:16467732-16467751 Msa0010900:intron 35.0%
!! TGTGATTTGTTGAAACTCCA+AGG + chr1_1:16467787-16467806 Msa0010900:intron 35.0%
ATTTGAACAAACCTCTACCT+TGG - chr1_1:16467807-16467826 None:intergenic 35.0%
! GTAGAGGTTTGTTCAAATCA+TGG + chr1_1:16467809-16467828 Msa0010900:intron 35.0%
TCTTAGTGCGTGTTTGAATT+CGG - chr1_1:16467865-16467884 None:intergenic 35.0%
! TTTGTGTTAGTTTACCCATG+TGG - chr1_1:16468059-16468078 None:intergenic 35.0%
CTAATTGCACTGAACAATAG+TGG - chr1_1:16468237-16468256 None:intergenic 35.0%
! AGAAAAACCGATATTTTCCG+CGG + chr1_1:16468255-16468274 Msa0010900:intron 35.0%
TGAATTGGAACATAACTGCT+AGG - chr1_1:16468459-16468478 None:intergenic 35.0%
TAGCAGTTATGTTCCAATTC+AGG + chr1_1:16468458-16468477 Msa0010900:CDS 35.0%
GTAATTATTGAGGGCAAAGT+TGG - chr1_1:16468759-16468778 None:intergenic 35.0%
TAATCTATGTGCCAAAATGG+AGG + chr1_1:16468890-16468909 Msa0010900:intron 35.0%
AATCTATGTGCCAAAATGGA+GGG + chr1_1:16468891-16468910 Msa0010900:intron 35.0%
!! TTCACAATGAGTGTCGTTTA+AGG - chr1_1:16468927-16468946 None:intergenic 35.0%
AAACGACACTCATTGTGAAA+TGG + chr1_1:16468928-16468947 Msa0010900:intron 35.0%
! GGCTTGATATTTTCTCTTGT+TGG + chr1_1:16468968-16468987 Msa0010900:intron 35.0%
TGCTTTAATCTTGCCTTCTT+TGG - chr1_1:16469233-16469252 None:intergenic 35.0%
ATGTGTTATGTACATCCTAC+TGG + chr1_1:16469287-16469306 Msa0010900:intron 35.0%
ACATTAATGAGGAAGAAGTG+AGG + chr1_1:16469566-16469585 Msa0010900:CDS 35.0%
CATTAATGAGGAAGAAGTGA+GGG + chr1_1:16469567-16469586 Msa0010900:CDS 35.0%
ATTAATGAGGAAGAAGTGAG+GGG + chr1_1:16469568-16469587 Msa0010900:CDS 35.0%
TTCTATGCCGTGTCATATAT+TGG + chr1_1:16469656-16469675 Msa0010900:intron 35.0%
ATCTTCATTTGCTTAAAGCC+AGG - chr1_1:16469718-16469737 None:intergenic 35.0%
GCAAATGAAGATTATAAGGC+AGG + chr1_1:16469726-16469745 Msa0010900:CDS 35.0%
CAGATGCTCCACAATAAAAA+AGG - chr1_1:16469966-16469985 None:intergenic 35.0%
!!! CCAATACTTAGTTTTGGCAT+TGG - chr1_1:16470193-16470212 None:intergenic 35.0%
CCAATGCCAAAACTAAGTAT+TGG + chr1_1:16470190-16470209 Msa0010900:three_prime_UTR 35.0%
TACTGATAAGTCATTGCTAC+TGG - chr1_1:16470477-16470496 None:intergenic 35.0%
ATGACTTATCAGTAGCTTGA+AGG + chr1_1:16470483-16470502 Msa0010900:three_prime_UTR 35.0%
TGACTTATCAGTAGCTTGAA+GGG + chr1_1:16470484-16470503 Msa0010900:three_prime_UTR 35.0%
AACATGAGCAGTGATGATAA+TGG - chr1_1:16470604-16470623 None:intergenic 35.0%
TCATGTTAATGAATGCACAG+TGG + chr1_1:16470617-16470636 Msa0010900:three_prime_UTR 35.0%
TAGATGGCGTTATCATTTGT+AGG + chr1_1:16470733-16470752 Msa0010900:three_prime_UTR 35.0%
ACAACACATGAACCTAAAGT+TGG - chr1_1:16470869-16470888 None:intergenic 35.0%
! CAATGATAATGAGAGTGGAA+AGG - chr1_1:16470971-16470990 None:intergenic 35.0%
AAAACAGGAGGCTAAAAAAG+TGG - chr1_1:16471002-16471021 None:intergenic 35.0%
! GGATCTAGTTTAAAAAGCCT+GGG - chr1_1:16471211-16471230 None:intergenic 35.0%
! TGGATCTAGTTTAAAAAGCC+TGG - chr1_1:16471212-16471231 None:intergenic 35.0%
! TTTTTAAACTAGATCCACCC+TGG + chr1_1:16471215-16471234 Msa0010900:three_prime_UTR 35.0%
GACAAAGCTTCCTTTCATAA+TGG + chr1_1:16471351-16471370 Msa0010900:three_prime_UTR 35.0%
! AAGCTTCCTTTCATAATGGA+AGG + chr1_1:16471355-16471374 Msa0010900:three_prime_UTR 35.0%
AATGGACCTTCCATTATGAA+AGG - chr1_1:16471364-16471383 None:intergenic 35.0%
TGAAGCAGCCATTGAATTAT+AGG + chr1_1:16471477-16471496 Msa0010900:three_prime_UTR 35.0%
! ATAGGGCACCTATAATTCAA+TGG - chr1_1:16471488-16471507 None:intergenic 35.0%
TTTGTTTGTGTAGAAGTGAC+TGG + chr1_1:16471579-16471598 Msa0010900:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG - chr1_1:16472115-16472134 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG - chr1_1:16472114-16472133 None:intergenic 35.0%
AGGTAAGGACTAAACTTACA+AGG + chr1_1:16472099-16472118 Msa0010900:intron 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr1_1:16472114-16472133 Msa0010900:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr1_1:16472115-16472134 Msa0010900:intron 35.0%
AAAAAAATGATGGCAGGATG+AGG - chr1_1:16472200-16472219 None:intergenic 35.0%
!!! CATCCTGCCATCATTTTTTT+TGG + chr1_1:16472200-16472219 Msa0010900:intron 35.0%
CATCCAAAAAAAATGATGGC+AGG - chr1_1:16472206-16472225 None:intergenic 35.0%
!!! CTGCCATCATTTTTTTTGGA+TGG + chr1_1:16472204-16472223 Msa0010900:intron 35.0%
TGCCCATCCAAAAAAAATGA+TGG - chr1_1:16472210-16472229 None:intergenic 35.0%
!! CTCACACACTTTGAGTTTTA+CGG + chr1_1:16472292-16472311 Msa0010900:intron 35.0%
AGTGGTAGTATTCTTGCAAA+TGG + chr1_1:16472488-16472507 Msa0010900:intron 35.0%
TGCTGCAACATAATTCTAAG+AGG - chr1_1:16473015-16473034 None:intergenic 35.0%
AATTATGTTGCAGCAAACCT+TGG + chr1_1:16473020-16473039 Msa0010900:intron 35.0%
ATTATGTTGCAGCAAACCTT+GGG + chr1_1:16473021-16473040 Msa0010900:intron 35.0%
ACTACTGTGTTCATATGCAT+TGG + chr1_1:16473062-16473081 Msa0010900:intron 35.0%
!!! TTTTTTACATTCGCCCAAGT+CGG + chr1_1:16473267-16473286 Msa0010900:intron 35.0%
GAAGTCAAGTTCAGTTCAAT+TGG - chr1_1:16473500-16473519 None:intergenic 35.0%
! AGACTTGCTCTAAACCTAAA+AGG - chr1_1:16473693-16473712 None:intergenic 35.0%
!! TAGCTGTTCCTTTAGAACTA+AGG + chr1_1:16473925-16473944 Msa0010900:three_prime_UTR 35.0%
GGAGAAGTTACAACCTTATA+TGG + chr1_1:16473961-16473980 Msa0010900:three_prime_UTR 35.0%
TTACAACCTTATATGGAGAG+TGG + chr1_1:16473968-16473987 Msa0010900:three_prime_UTR 35.0%
AGAAAATGCTTCCACAAAAG+GGG - chr1_1:16474024-16474043 None:intergenic 35.0%
CCAATGACTCTATAAGTCTT+TGG - chr1_1:16474051-16474070 None:intergenic 35.0%
CCAAAGACTTATAGAGTCAT+TGG + chr1_1:16474048-16474067 Msa0010900:three_prime_UTR 35.0%
!! TGAAGGAAGTACTACCTCTT+CGG - chr1_1:16467114-16467133 None:intergenic 40.0%
AACTGAGAAGCTTCAAAACC+AGG - chr1_1:16467268-16467287 None:intergenic 40.0%
TTTCAAAGCCGAAAAGCCTA+TGG + chr1_1:16467291-16467310 Msa0010900:CDS 40.0%
TTCAAAGCCGAAAAGCCTAT+GGG + chr1_1:16467292-16467311 Msa0010900:CDS 40.0%
! AGCAAAACCCATAGGCTTTT+CGG - chr1_1:16467302-16467321 None:intergenic 40.0%
TTGAAGAGAGCAAAACCCAT+AGG - chr1_1:16467310-16467329 None:intergenic 40.0%
TTAGCAGCAATAGCTTGATG+AGG - chr1_1:16467337-16467356 None:intergenic 40.0%
TGAAGAACAGATTTAGCCTC+GGG - chr1_1:16467388-16467407 None:intergenic 40.0%
TGTCAATGTCGGTATTGTGA+AGG - chr1_1:16467556-16467575 None:intergenic 40.0%
!! ATCAGCAGAAGTGTCAATGT+CGG - chr1_1:16467567-16467586 None:intergenic 40.0%
TTGTTGAAACTCCAAGGTAG+AGG + chr1_1:16467793-16467812 Msa0010900:intron 40.0%
GCTGGGGATTATAATCATAC+TGG + chr1_1:16467984-16468003 Msa0010900:CDS 40.0%
TAGCCTGCATATGGATCATA+CGG - chr1_1:16468393-16468412 None:intergenic 40.0%
TGTTCCAATTCAGGTGAGAA+TGG + chr1_1:16468467-16468486 Msa0010900:intron 40.0%
AAAGCCATTCTCACCTGAAT+TGG - chr1_1:16468474-16468493 None:intergenic 40.0%
GACACTCATTGTGAAATGGA+GGG + chr1_1:16468932-16468951 Msa0010900:intron 40.0%
AATGGAGGGAGTAGTTGAAA+AGG + chr1_1:16468946-16468965 Msa0010900:intron 40.0%
ATGGAGGGAGTAGTTGAAAA+GGG + chr1_1:16468947-16468966 Msa0010900:intron 40.0%
TATCTCAAAGTGAATGTGGG+AGG + chr1_1:16469104-16469123 Msa0010900:intron 40.0%
ATCTCAAAGTGAATGTGGGA+GGG + chr1_1:16469105-16469124 Msa0010900:intron 40.0%
CTTGCAACACCCTGTTTATT+GGG + chr1_1:16469530-16469549 Msa0010900:CDS 40.0%
ACCCTGTTTATTGGGAACTT+GGG + chr1_1:16469538-16469557 Msa0010900:CDS 40.0%
TCCCAAGTTCCCAATAAACA+GGG - chr1_1:16469542-16469561 None:intergenic 40.0%
CTTGGGAGAGAACATTAATG+AGG + chr1_1:16469555-16469574 Msa0010900:CDS 40.0%
TGAAGATTATAAGGCAGGAG+AGG + chr1_1:16469731-16469750 Msa0010900:CDS 40.0%
GGTATCCAATAACCTATTGC+AGG + chr1_1:16469854-16469873 Msa0010900:intron 40.0%
CACATCCTGCAATAGGTTAT+TGG - chr1_1:16469862-16469881 None:intergenic 40.0%
CACTATTCACATCCTGCAAT+AGG - chr1_1:16469869-16469888 None:intergenic 40.0%
!! ATCCCAAGTTCTGGTTCAAT+TGG + chr1_1:16469924-16469943 Msa0010900:CDS 40.0%
TGCCAATTGAACCAGAACTT+GGG - chr1_1:16469929-16469948 None:intergenic 40.0%
ATGCCAATTGAACCAGAACT+TGG - chr1_1:16469930-16469949 None:intergenic 40.0%
TTCTCTATTAACCCAGCATC+TGG + chr1_1:16470028-16470047 Msa0010900:three_prime_UTR 40.0%
TCTCTATTAACCCAGCATCT+GGG + chr1_1:16470029-16470048 Msa0010900:three_prime_UTR 40.0%
TGGTTTCTCCATTCTGTTGT+AGG + chr1_1:16470340-16470359 Msa0010900:three_prime_UTR 40.0%
ATTCCTTGCCTACAACAGAA+TGG - chr1_1:16470351-16470370 None:intergenic 40.0%
AAAAGATGGAACCTACCCTA+TGG + chr1_1:16470428-16470447 Msa0010900:three_prime_UTR 40.0%
GACTTATCAGTAGCTTGAAG+GGG + chr1_1:16470485-16470504 Msa0010900:three_prime_UTR 40.0%
! GGCGATGACTTGATAATCAA+TGG - chr1_1:16470583-16470602 None:intergenic 40.0%
!! GGTTCCCAGATTAGTTTCAT+AGG + chr1_1:16470706-16470725 Msa0010900:three_prime_UTR 40.0%
TTAGGGATGCTTATCCAAAC+AGG + chr1_1:16470828-16470847 Msa0010900:three_prime_UTR 40.0%
ATGCTTATCCAAACAGGCAT+TGG + chr1_1:16470834-16470853 Msa0010900:three_prime_UTR 40.0%
TGGTATCTGCTTCCAACTTT+AGG + chr1_1:16470854-16470873 Msa0010900:three_prime_UTR 40.0%
AAATGGAGTCATGAATGCCA+GGG - chr1_1:16471235-16471254 None:intergenic 40.0%
CAATATGGCAGTAGCAGAAA+TGG - chr1_1:16471382-16471401 None:intergenic 40.0%
!! GCAGGTGATTTTTGTTTGCA+CGG + chr1_1:16471404-16471423 Msa0010900:three_prime_UTR 40.0%
!! CAGGTGATTTTTGTTTGCAC+GGG + chr1_1:16471405-16471424 Msa0010900:three_prime_UTR 40.0%
!! GATTTTTGTTTGCACGGGTA+AGG + chr1_1:16471410-16471429 Msa0010900:three_prime_UTR 40.0%
GACGTTCCAACCAAATTTGA+TGG - chr1_1:16471443-16471462 None:intergenic 40.0%
AATTTGGTTGGAACGTCTGT+TGG + chr1_1:16471446-16471465 Msa0010900:three_prime_UTR 40.0%
TTTGTGTAGAAGTGACTGGT+AGG + chr1_1:16471583-16471602 Msa0010900:intron 40.0%
AGGGGATAATAGAGTCATTG+TGG + chr1_1:16472171-16472190 Msa0010900:intron 40.0%
GGGGATAATAGAGTCATTGT+GGG + chr1_1:16472172-16472191 Msa0010900:intron 40.0%
GGGATAATAGAGTCATTGTG+GGG + chr1_1:16472173-16472192 Msa0010900:intron 40.0%
!! ACACACTTTGAGTTTTACGG+TGG + chr1_1:16472295-16472314 Msa0010900:intron 40.0%
ATCACAGTAGACATTTGACG+AGG + chr1_1:16472647-16472666 Msa0010900:intron 40.0%
!! GACGACTCTAGAAACTTTTC+TGG - chr1_1:16472728-16472747 None:intergenic 40.0%
! ATGCTAGCAACACTCTCTTT+TGG + chr1_1:16472791-16472810 Msa0010900:intron 40.0%
! TGCTAGCAACACTCTCTTTT+GGG + chr1_1:16472792-16472811 Msa0010900:intron 40.0%
CTAATTTACGTTGAGTCCCA+AGG - chr1_1:16473040-16473059 None:intergenic 40.0%
! TTTTTACATTCGCCCAAGTC+GGG + chr1_1:16473268-16473287 Msa0010900:intron 40.0%
TATGTCCCACCACTTTATGT+GGG + chr1_1:16473359-16473378 Msa0010900:intron 40.0%
GAAATGGAACCCACATAAAG+TGG - chr1_1:16473371-16473390 None:intergenic 40.0%
ATCAATGTAGGACACCACTT+TGG - chr1_1:16473393-16473412 None:intergenic 40.0%
! GCACTCACTCTTTTATTGAG+TGG - chr1_1:16473417-16473436 None:intergenic 40.0%
GTTCAGTTCAATTGGGACTT+GGG - chr1_1:16473492-16473511 None:intergenic 40.0%
AGTTCAGTTCAATTGGGACT+TGG - chr1_1:16473493-16473512 None:intergenic 40.0%
GGACAAACGGTTGTTGAAAA+TGG - chr1_1:16473672-16473691 None:intergenic 40.0%
! CAACAACCGTTTGTCCTTTT+AGG + chr1_1:16473676-16473695 Msa0010900:intron 40.0%
! GTTTAGAGCAAGTCTTGCTT+TGG + chr1_1:16473698-16473717 Msa0010900:intron 40.0%
! CCTCTAATGTCGTTTCACAT+CGG - chr1_1:16473854-16473873 None:intergenic 40.0%
!! AGTTCTAAAGGAACAGCTAG+TGG - chr1_1:16473924-16473943 None:intergenic 40.0%
GATTCATTCATGGCAGCCAA+CGG + chr1_1:16467008-16467027 Msa0010900:exon 45.0%
GGAAGAAGGAGAAGGAATAG+CGG - chr1_1:16467093-16467112 None:intergenic 45.0%
AGTACTACCTCTTCGGAAGA+AGG - chr1_1:16467107-16467126 None:intergenic 45.0%
AACCTTTGTCGATGGTTACC+TGG + chr1_1:16467247-16467266 Msa0010900:CDS 45.0%
AACCAGGTAACCATCGACAA+AGG - chr1_1:16467252-16467271 None:intergenic 45.0%
!! GGATATGCTTTTTGATCCCG+AGG + chr1_1:16467369-16467388 Msa0010900:CDS 45.0%
GACATTGACACTTCTGCTGA+TGG + chr1_1:16467566-16467585 Msa0010900:intron 45.0%
AGTAAACGGTTACGAACAGC+TGG + chr1_1:16467966-16467985 Msa0010900:CDS 45.0%
GTAAACGGTTACGAACAGCT+GGG + chr1_1:16467967-16467986 Msa0010900:CDS 45.0%
TAAACGGTTACGAACAGCTG+GGG + chr1_1:16467968-16467987 Msa0010900:CDS 45.0%
TTGCAGACCGCGGAAAATAT+CGG - chr1_1:16468265-16468284 None:intergenic 45.0%
ATGTTGACAATTGCAGACCG+CGG - chr1_1:16468275-16468294 None:intergenic 45.0%
GAGCTCAAAATTGCACACGA+AGG - chr1_1:16468555-16468574 None:intergenic 45.0%
! TTGTCTTTCGCCCTCCATTT+TGG - chr1_1:16468904-16468923 None:intergenic 45.0%
CGACACTCATTGTGAAATGG+AGG + chr1_1:16468931-16468950 Msa0010900:intron 45.0%
ACTGTCCTTGAAGTCCTGAA+CGG + chr1_1:16469059-16469078 Msa0010900:intron 45.0%
TCTCAAAGTGAATGTGGGAG+GGG + chr1_1:16469106-16469125 Msa0010900:intron 45.0%
!! TAAACAGGGTGTTGCAAGGA+GGG - chr1_1:16469528-16469547 None:intergenic 45.0%
!! ATAAACAGGGTGTTGCAAGG+AGG - chr1_1:16469529-16469548 None:intergenic 45.0%
!! CCAATAAACAGGGTGTTGCA+AGG - chr1_1:16469532-16469551 None:intergenic 45.0%
CCTTGCAACACCCTGTTTAT+TGG + chr1_1:16469529-16469548 Msa0010900:CDS 45.0%
CACCCTGTTTATTGGGAACT+TGG + chr1_1:16469537-16469556 Msa0010900:CDS 45.0%
CTCCCAAGTTCCCAATAAAC+AGG - chr1_1:16469543-16469562 None:intergenic 45.0%
GAACAGAAGAGCTGTGTCAA+AGG - chr1_1:16469621-16469640 None:intergenic 45.0%
GCTTTGTAATGCAGACAACC+TGG + chr1_1:16469697-16469716 Msa0010900:intron 45.0%
AAATGTGCACCACAATCTGC+AGG + chr1_1:16469893-16469912 Msa0010900:CDS 45.0%
AATGTGCACCACAATCTGCA+GGG + chr1_1:16469894-16469913 Msa0010900:CDS 45.0%
!! GTTCTGGTTCAATTGGCATG+CGG + chr1_1:16469931-16469950 Msa0010900:CDS 45.0%
CTCTATTAACCCAGCATCTG+GGG + chr1_1:16470030-16470049 Msa0010900:three_prime_UTR 45.0%
AGTCATAAACCCCAGATGCT+GGG - chr1_1:16470042-16470061 None:intergenic 45.0%
! AGCATCTGGGGTTTATGACT+GGG + chr1_1:16470042-16470061 Msa0010900:three_prime_UTR 45.0%
TCTCCATTCTGTTGTAGGCA+AGG + chr1_1:16470345-16470364 Msa0010900:three_prime_UTR 45.0%
CATTTATCGGCAGCATGTGT+TGG + chr1_1:16470685-16470704 Msa0010900:three_prime_UTR 45.0%
AGCAGATACCAATGCCTGTT+TGG - chr1_1:16470845-16470864 None:intergenic 45.0%
ATGAGAGTGGAAAGGGTAGA+TGG - chr1_1:16470963-16470982 None:intergenic 45.0%
!! GTCTTCTAAAGTACACTCCC+AGG + chr1_1:16471191-16471210 Msa0010900:three_prime_UTR 45.0%
CAAATGGAGTCATGAATGCC+AGG - chr1_1:16471236-16471255 None:intergenic 45.0%
TGCTACTGCCATATTGTTGC+AGG + chr1_1:16471386-16471405 Msa0010900:three_prime_UTR 45.0%
AATTTGTCTGGTCCCGACTT+GGG - chr1_1:16473283-16473302 None:intergenic 45.0%
AAATTTGTCTGGTCCCGACT+TGG - chr1_1:16473284-16473303 None:intergenic 45.0%
GTATGTCCCACCACTTTATG+TGG + chr1_1:16473358-16473377 Msa0010900:intron 45.0%
TGGAACCCACATAAAGTGGT+GGG - chr1_1:16473367-16473386 None:intergenic 45.0%
ATGGAACCCACATAAAGTGG+TGG - chr1_1:16473368-16473387 None:intergenic 45.0%
TGTGGGTTCCATTTCCAAAG+TGG + chr1_1:16473376-16473395 Msa0010900:intron 45.0%
! GTAGGACACCACTTTGGAAA+TGG - chr1_1:16473387-16473406 None:intergenic 45.0%
CCGATGTGAAACGACATTAG+AGG + chr1_1:16473851-16473870 Msa0010900:three_prime_UTR 45.0%
ACACTGCCACTCTCCATATA+AGG - chr1_1:16473977-16473996 None:intergenic 45.0%
! GATCCTATTAGCCCCTTTTG+TGG + chr1_1:16474010-16474029 Msa0010900:three_prime_UTR 45.0%
CTTCCACAAAAGGGGCTAAT+AGG - chr1_1:16474016-16474035 None:intergenic 45.0%
!!! ATAATAAGATAATAATTTTT+CGG - chr1_1:16473230-16473249 None:intergenic 5.0%
GAAGGAGAAGGAATAGCGGT+GGG - chr1_1:16467089-16467108 None:intergenic 50.0%
AGAAGGAGAAGGAATAGCGG+TGG - chr1_1:16467090-16467109 None:intergenic 50.0%
TCCTTCTCCTTCTTCCGAAG+AGG + chr1_1:16467097-16467116 Msa0010900:CDS 50.0%
ACCTCTTCGGAAGAAGGAGA+AGG - chr1_1:16467101-16467120 None:intergenic 50.0%
TATGGATCATACGGAGGAGG+AGG - chr1_1:16468384-16468403 None:intergenic 50.0%
GCATATGGATCATACGGAGG+AGG - chr1_1:16468387-16468406 None:intergenic 50.0%
CCTGCATATGGATCATACGG+AGG - chr1_1:16468390-16468409 None:intergenic 50.0%
CCTCCGTATGATCCATATGC+AGG + chr1_1:16468387-16468406 Msa0010900:CDS 50.0%
GCAACAGGATAGCCTGCATA+TGG - chr1_1:16468402-16468421 None:intergenic 50.0%
!! GGCATTGGTACTTGTGCAAC+AGG - chr1_1:16468417-16468436 None:intergenic 50.0%
ATAGACACAGGAGCAGGCAT+TGG - chr1_1:16468432-16468451 None:intergenic 50.0%
CTGCTAGGTGAGATAGACAC+AGG - chr1_1:16468444-16468463 None:intergenic 50.0%
CTGTCCTTGAAGTCCTGAAC+GGG + chr1_1:16469060-16469079 Msa0010900:intron 50.0%
TAACAGCACCCTGCAGATTG+TGG - chr1_1:16469905-16469924 None:intergenic 50.0%
!! GGTGCTGTTATCCCAAGTTC+TGG + chr1_1:16469915-16469934 Msa0010900:CDS 50.0%
CAGTCATAAACCCCAGATGC+TGG - chr1_1:16470043-16470062 None:intergenic 50.0%
! CAGCATCTGGGGTTTATGAC+TGG + chr1_1:16470041-16470060 Msa0010900:three_prime_UTR 50.0%
CATTGCTACTGGAGCTCCAT+TGG - chr1_1:16470466-16470485 None:intergenic 50.0%
! CGTTTCACATCGGCCTGTTT+TGG - chr1_1:16473844-16473863 None:intergenic 50.0%
TCCACCCTTACCACCAGCAA+TGG + chr1_1:16467033-16467052 Msa0010900:CDS 55.0%
GAGGCCATTGCTGGTGGTAA+GGG - chr1_1:16467040-16467059 None:intergenic 55.0%
!! GAAGGAATAGCGGTGGGTTG+AGG - chr1_1:16467083-16467102 None:intergenic 55.0%
CTGCTGATGGCAGATGTGTC+TGG + chr1_1:16467579-16467598 Msa0010900:intron 55.0%
GGCGGAGGATGAAAAGGAGA+CGG - chr1_1:16468020-16468039 None:intergenic 55.0%
CACCTGTTTGGGGACCACAT+GGG + chr1_1:16468042-16468061 Msa0010900:intron 55.0%
TACCCATGTGGTCCCCAAAC+AGG - chr1_1:16468047-16468066 None:intergenic 55.0%
GGTGAGATAGACACAGGAGC+AGG - chr1_1:16468438-16468457 None:intergenic 55.0%
TGTGCCCGTTCAGGACTTCA+AGG - chr1_1:16469067-16469086 None:intergenic 55.0%
GAACTCTTCTGTGCCCGTTC+AGG - chr1_1:16469076-16469095 None:intergenic 55.0%
ACCTACCCTATGGCTGTTCC+TGG + chr1_1:16470438-16470457 Msa0010900:three_prime_UTR 55.0%
ACCAGGAACAGCCATAGGGT+AGG - chr1_1:16470442-16470461 None:intergenic 55.0%
TGGCACCAGGAACAGCCATA+GGG - chr1_1:16470446-16470465 None:intergenic 55.0%
TTGGCACCAGGAACAGCCAT+AGG - chr1_1:16470447-16470466 None:intergenic 55.0%
! ATGGCTGTTCCTGGTGCCAA+TGG + chr1_1:16470447-16470466 Msa0010900:three_prime_UTR 55.0%
! GTGAACTGGGGGCGTACTTT+AGG + chr1_1:16471037-16471056 Msa0010900:three_prime_UTR 55.0%
TGGAGTCATGAATGCCAGGG+TGG - chr1_1:16471232-16471251 None:intergenic 55.0%
ACAGCTAGTGGCGTTTGAGG+TGG - chr1_1:16473912-16473931 None:intergenic 55.0%
GGAACAGCTAGTGGCGTTTG+AGG - chr1_1:16473915-16473934 None:intergenic 55.0%
GTGGTAAGGGTGGATGCCGT+TGG - chr1_1:16467027-16467046 None:intergenic 60.0%
GCCATTGCTGGTGGTAAGGG+TGG - chr1_1:16467037-16467056 None:intergenic 60.0%
GGAGGCCATTGCTGGTGGTA+AGG - chr1_1:16467041-16467060 None:intergenic 60.0%
!! ATAGCGGTGGGTTGAGGAGG+AGG - chr1_1:16467077-16467096 None:intergenic 60.0%
!! GGAATAGCGGTGGGTTGAGG+AGG - chr1_1:16467080-16467099 None:intergenic 60.0%
!! GGTGGTGGCGGAGGATGAAA+AGG - chr1_1:16468026-16468045 None:intergenic 60.0%
ATCCTCCGCCACCACCTGTT+TGG + chr1_1:16468030-16468049 Msa0010900:intron 60.0%
TCCTCCGCCACCACCTGTTT+GGG + chr1_1:16468031-16468050 Msa0010900:intron 60.0%
TGTGGTCCCCAAACAGGTGG+TGG - chr1_1:16468041-16468060 None:intergenic 60.0%
CCATGTGGTCCCCAAACAGG+TGG - chr1_1:16468044-16468063 None:intergenic 60.0%
CCACCTGTTTGGGGACCACA+TGG + chr1_1:16468041-16468060 Msa0010900:intron 60.0%
TCATACGGAGGAGGAGGTGG+TGG - chr1_1:16468378-16468397 None:intergenic 60.0%
GGATCATACGGAGGAGGAGG+TGG - chr1_1:16468381-16468400 None:intergenic 60.0%
ACTGGAGCTCCATTGGCACC+AGG - chr1_1:16470459-16470478 None:intergenic 60.0%
TTGAGGAGGAGGAGGAGCGG+CGG - chr1_1:16467066-16467085 None:intergenic 65.0%
GGGTTGAGGAGGAGGAGGAG+CGG - chr1_1:16467069-16467088 None:intergenic 65.0%
CCTCCGCCACCACCTGTTTG+GGG + chr1_1:16468032-16468051 Msa0010900:intron 65.0%
! GGTCCCCAAACAGGTGGTGG+CGG - chr1_1:16468038-16468057 None:intergenic 65.0%
!! GCGGTGGGTTGAGGAGGAGG+AGG - chr1_1:16467074-16467093 None:intergenic 70.0%
!! CCCCAAACAGGTGGTGGCGG+AGG - chr1_1:16468035-16468054 None:intergenic 70.0%
CGGCGGGAGGCCATTGCTGG+TGG - chr1_1:16467046-16467065 None:intergenic 75.0%
AGGAGGAGGAGGAGCGGCGG+CGG - chr1_1:16467063-16467082 None:intergenic 75.0%
! CGGCGGCGGGAGGCCATTGC+TGG - chr1_1:16467049-16467068 None:intergenic 80.0%
! GGAGGAGGAGGAGCGGCGGC+GGG - chr1_1:16467062-16467081 None:intergenic 80.0%
! GGAGGAGGAGCGGCGGCGGG+AGG - chr1_1:16467059-16467078 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16466853 16474179 16466853 ID=Msa0010900;Name=Msa0010900
chr1_1 mRNA 16466853 16474179 16466853 ID=Msa0010900-mRNA-1;Parent=Msa0010900;Name=Msa0010900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=164|0.71|0.87|1|0.85|0.75|8|1880|274
chr1_1 exon 16466853 16467118 16466853 ID=Msa0010900-mRNA-1:exon:6000;Parent=Msa0010900-mRNA-1
chr1_1 exon 16467190 16467445 16467190 ID=Msa0010900-mRNA-1:exon:6001;Parent=Msa0010900-mRNA-1
chr1_1 exon 16467940 16468018 16467940 ID=Msa0010900-mRNA-1:exon:6002;Parent=Msa0010900-mRNA-1
chr1_1 exon 16468365 16468479 16468365 ID=Msa0010900-mRNA-1:exon:6003;Parent=Msa0010900-mRNA-1
chr1_1 exon 16469511 16469602 16469511 ID=Msa0010900-mRNA-1:exon:6004;Parent=Msa0010900-mRNA-1
chr1_1 exon 16469711 16469780 16469711 ID=Msa0010900-mRNA-1:exon:6005;Parent=Msa0010900-mRNA-1
chr1_1 exon 16469876 16471536 16469876 ID=Msa0010900-mRNA-1:exon:6006;Parent=Msa0010900-mRNA-1
chr1_1 exon 16473850 16474179 16473850 ID=Msa0010900-mRNA-1:exon:6007;Parent=Msa0010900-mRNA-1
chr1_1 five_prime_UTR 16466853 16467016 16466853 ID=Msa0010900-mRNA-1:five_prime_utr;Parent=Msa0010900-mRNA-1
chr1_1 CDS 16467017 16467118 16467017 ID=Msa0010900-mRNA-1:cds;Parent=Msa0010900-mRNA-1
chr1_1 CDS 16467190 16467445 16467190 ID=Msa0010900-mRNA-1:cds;Parent=Msa0010900-mRNA-1
chr1_1 CDS 16467940 16468018 16467940 ID=Msa0010900-mRNA-1:cds;Parent=Msa0010900-mRNA-1
chr1_1 CDS 16468365 16468479 16468365 ID=Msa0010900-mRNA-1:cds;Parent=Msa0010900-mRNA-1
chr1_1 CDS 16469511 16469602 16469511 ID=Msa0010900-mRNA-1:cds;Parent=Msa0010900-mRNA-1
chr1_1 CDS 16469711 16469780 16469711 ID=Msa0010900-mRNA-1:cds;Parent=Msa0010900-mRNA-1
chr1_1 CDS 16469876 16469986 16469876 ID=Msa0010900-mRNA-1:cds;Parent=Msa0010900-mRNA-1
chr1_1 three_prime_UTR 16469987 16471536 16469987 ID=Msa0010900-mRNA-1:three_prime_utr;Parent=Msa0010900-mRNA-1
chr1_1 three_prime_UTR 16473850 16474179 16473850 ID=Msa0010900-mRNA-1:three_prime_utr;Parent=Msa0010900-mRNA-1
Gene Sequence

>Msa0010900

ATGGCAGCCAACGGCATCCACCCTTACCACCAGCAATGGCCTCCCGCCGCCGCTCCTCCTCCTCCTCAACCCACCGCTATTCCTTCTCCTTCTTCCGAAGAGGTTCGAACCATATTTATAACGGGTCTTCCAGAAGATGTTAAAGAGAGAGAACTTCAAAACCTTTGTCGATGGTTACCTGGTTTTGAAGCTTCTCAGTTGAATTTCAAAGCCGAAAAGCCTATGGGTTTTGCTCTCTTCAATTCTCCTCATCAAGCTATTGCTGCTAAAGATATTCTTCAGGATATGCTTTTTGATCCCGAGGCTAAATCTGTTCTTCATACTGAGATGGCTAAGAAAAATCTCTTTGTTAAACGAGGAGCTGATGCAGTTGCTTTTGATCAAAGTAAACGGTTACGAACAGCTGGGGATTATAATCATACTGGTTATGTAACTCCATATATGGCTCCACCACCTCCTCCTCCGTATGATCCATATGCAGGCTATCCTGTTGCACAAGTACCAATGCCTGCTCCTGTGTCTATCTCACCTAGCAGTTATGTTCCAATTCAGAACACTAAAGATAACCCTCCTTGCAACACCCTGTTTATTGGGAACTTGGGAGAGAACATTAATGAGGAAGAAGTGAGGGGCCTTTTCAGTGTACAACCTGGCTTTAAGCAAATGAAGATTATAAGGCAGGAGAGGCATACAGTTTGCTTCATTGAGTTTGAAGATGTGAATAGTGCTACAAATGTGCACCACAATCTGCAGGGTGCTGTTATCCCAAGTTCTGGTTCAATTGGCATGCGGATACAATATCCTTTTTTATTGTGGAGCATCTGA
Protein sequence

>Msa0010900

MAANGIHPYHQQWPPAAAPPPPQPTAIPSPSSEEVRTIFITGLPEDVKERELQNLCRWLPGFEASQLNFKAEKPMGFALFNSPHQAIAAKDILQDMLFDPEAKSVLHTEMAKKNLFVKRGADAVAFDQSKRLRTAGDYNHTGYVTPYMAPPPPPPYDPYAGYPVAQVPMPAPVSISPSSYVPIQNTKDNPPCNTLFIGNLGENINEEEVRGLFSVQPGFKQMKIIRQERHTVCFIEFEDVNSATNVHHNLQGAVIPSSGSIGMRIQYPFLLWSI*