AlfalfaGEDB | Msa1091140

M. sativa cultivar zhongmu-4 / Msa1091140

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091140	XP_003621065.2	96.619	1124	35	1	1	1124	1	1121	0.0	2183

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091140	G7KXS7	96.619	1124	35	1	1	1124	1	1121	0.0	2183

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0655660	Msa1091140	0.802535	5.358238e-49	-8.615850e-47
Msa1046960	Msa1091140	0.970342	1.797050e-131	-8.615850e-47
Msa1091140	Msa1204980	0.804726	1.880858e-49	-8.615850e-47
Msa1091140	Msa1205010	0.805403	1.357907e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091140	MtrunA17_Chr7g0214781	96.619	1124	35	1	1	1124	1	1121	0.0	2183

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1091140	AT5G13390.1	63.404	1134	388	12	2	1124	6	1123	0.0	1390
Msa1091140	AT5G13390.2	63.325	1137	387	13	2	1124	6	1126	0.0	1385

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Find 319 sgRNAs with CRISPR-Local

Find 622 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGAGAAATGGAGTCTCT+AGG	0.491043	7_3:+6443518	None:intergenic
AAACGATGAAATCCTCGGAA+TGG	0.562362	7_3:+6442923	None:intergenic
AAATAAAAGCCAGCAGCAGC+AGG	0.427140	7_3:+6439387	None:intergenic
AAATCCATAATAGTAAATGC+TGG	0.533634	7_3:+6439077	None:intergenic
AAATGGAGTCTCTAGGGTTA+GGG	0.486379	7_3:+6443525	None:intergenic
AAATGTAAGGGCGGAGGGAA+CGG	0.458096	7_3:+6443582	None:intergenic
AACAGAGTGACATACAATCA+TGG	0.558842	7_3:-6437122	Msa1091140:CDS
AACATATAGTACAGAGTACA+TGG	0.575080	7_3:+6436950	None:intergenic
AACCAGCAAATTGCAATATC+CGG	0.458342	7_3:-6436714	Msa1091140:three_prime_UTR
AACCCTTATACTCCTTATAT+TGG	0.325698	7_3:+6442644	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATAGAAAGTGAATTGAGAG+AGG	+	chr7_3:6436886-6436905	None:intergenic	30.0%
TAGGGTAAGATTTGAATTGA+AGG	+	chr7_3:6436936-6436955	None:intergenic	30.0%
ATCTTAAACGATGAAATCCT+CGG	+	chr7_3:6437208-6437227	None:intergenic	30.0%
TCATATTGGATCGCATTATT+CGG	-	chr7_3:6437339-6437358	Msa1091140:CDS	30.0%
CCGTATAACAGAAACAAAAA+CGG	+	chr7_3:6437418-6437437	None:intergenic	30.0%
AACCCTTATACTCCTTATAT+TGG	+	chr7_3:6437482-6437501	None:intergenic	30.0%
TCTTAGGATGATAGTCAAAA+TGG	-	chr7_3:6438110-6438129	Msa1091140:CDS	30.0%
ATAAATACAAAGCAGATTGC+AGG	+	chr7_3:6438294-6438313	None:intergenic	30.0%
CTGCTTTGTATTTATGAACA+CGG	-	chr7_3:6438299-6438318	Msa1091140:CDS	30.0%
TGCTTTGTATTTATGAACAC+GGG	-	chr7_3:6438300-6438319	Msa1091140:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	6436493	6443652	6436493	ID=Msa1091140;Name=Msa1091140
chr7_3	mRNA	6436493	6443652	6436493	ID=Msa1091140-mRNA-1;Parent=Msa1091140;Name=Msa1091140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=37\|1\|1\|1\|1\|1\|4\|485\|1124
chr7_3	exon	6436493	6438327	6436493	ID=Msa1091140-mRNA-1:exon:1922;Parent=Msa1091140-mRNA-1
chr7_3	exon	6438517	6438739	6438517	ID=Msa1091140-mRNA-1:exon:1921;Parent=Msa1091140-mRNA-1
chr7_3	exon	6438850	6439421	6438850	ID=Msa1091140-mRNA-1:exon:1920;Parent=Msa1091140-mRNA-1
chr7_3	exon	6442386	6443652	6442386	ID=Msa1091140-mRNA-1:exon:1919;Parent=Msa1091140-mRNA-1
chr7_3	five_prime_UTR	6443616	6443652	6443616	ID=Msa1091140-mRNA-1:five_prime_utr;Parent=Msa1091140-mRNA-1
chr7_3	CDS	6442386	6443615	6442386	ID=Msa1091140-mRNA-1:cds;Parent=Msa1091140-mRNA-1
chr7_3	CDS	6438850	6439421	6438850	ID=Msa1091140-mRNA-1:cds;Parent=Msa1091140-mRNA-1
chr7_3	CDS	6438517	6438739	6438517	ID=Msa1091140-mRNA-1:cds;Parent=Msa1091140-mRNA-1
chr7_3	CDS	6436978	6438327	6436978	ID=Msa1091140-mRNA-1:cds;Parent=Msa1091140-mRNA-1
chr7_3	three_prime_UTR	6436493	6436977	6436493	ID=Msa1091140-mRNA-1:three_prime_utr;Parent=Msa1091140-mRNA-1

Gene Sequence

>Msa1091140

ATGCTTCAACCCCGTTCCCTCCGCCCTTACATTTCCATCTCTTCCCCTTCCTCAAACCCTAACCCTAACCCTAACCCTAGAGACTCCATTTCTCGTTTCAACATCAACAATGAATTCCCTTCATCATCATCTTCAACCTCATCATTCTCCTCCTCCAGATCTCTCAAAAACCCTACAACATTCTCCCACAATACCCTAATCGCAATCTCCCTCATCCCCGCCGCACTCTTCATCCTCGACCTCTCTTCCACCACCGTCACAACCACCCTAATCATCGGTCTCATGATCTCCTACATCCTCGACCTTCTCAATTTCAAACAACCTTCCTTCATCTCCCTTCACCTAACCCTAATCCTCTCTCAATTCACTTTCTATTTCACCTCCTCACCTTCTTTATACACCACCTTCAATTCAAATCTTACCCTAACTATCCTCGCTACTTTCCTCACCGCACACACTACCTTCCTTATAGGTATCTGGTCATCTCTTCAATTCAAATTCCTTCTTCTCGAAAACCCTGCTATCGTCGTCGTGCTCGAACGTCTCCTCTTTTCCTGCCTCCCAATTACAGCTTCCTCGTTATTCACTTATGCCGCTGTTGCTGCTGTTGGAATTCAAAATTCTGCTTATTATCTTATGTTTTTTAATTGTTGTTTCTATTGGTTGTATTCCATTCCGAGGATTTCATCGTTTAAGATGAATAATAATGCTAGGTTTCATGGTGGTGAAGCTCCTAAAGATAGTTATATACTTGGTCCATTAGAGAGCTGTGTTCATGCATTGTATTTGGTTTTTGCACCGATTTGTTTTCATATTGGATCGCATTATTCGGTTGTGTTTGCGTCCTACGCGAATTTCTGTGATTTGGTTTTGTTGTTTTTTGTGCCGTTTTTGTTTCTGTTATACGGTTCTACTAGAGGTGGTTTGTGGTGGGTTTCTGAGAATGCTGCCAATATAAGGAGTATAAGGGTTGTGAATGGTTTTGTTGCGTTGGTTTTCATTGTCATTGCGTTGGAGGTTAGAGTTGTTTTTCATTCGTTTGGGAGGTATATTCAGGTTCCAGCGCCATTGAATTATGTTCTTGTTACCATTACTATGCTTGGTGGGGCGGGTGCTGCTGGTGCTTATGCTATGGGGATGGTTTCGGATGCGCTTAGTTCGGTTGCTTTTACTACTTCTGCTATTGTGGTTAGTGCTGCTGGAGCTGTTGTTCTTGGATATCCTGTACTGTTCCTGCCTATGCCTGCTGCTGCTGGCTTTTATTTGGCTCGATTTTTTGAAAAGAAGAGTTTGACTTCATACTTTGCTTTTGTTGTTCTTGGGAGCCTGATGGTTACATGGTTTGTGCTGCACAATTTCTGGGATTTAAATATTTGGTTGGCAGGCATGTCACTTAAATCTTTTTGTAAGCTAATTGTTGCAAATGCGGTCCTGGCTATGGCTATTCCTGGTCTAACTCTTCTGCCTCCGAAGATAAACTTTTTATCTGAAATCAGTTTGATAAGCCATGCGTTGCTCTTATGCTACATTGAAAGCCGGTTTTTCAGTTACTCCAGCATTTACTATTATGGATTTGAGGATGAGGTGATGTATCCTAGCTACATGGTTGTGATGACAACTTTGTTGGGTTTGGCTTTGGTGAGAAGGCTATCTGTGGATCATCGAATTGGAGGAAAAGCAGTTTGGATTTTGACTTGCCTCTTTATTTCAAAGCTTAGCATGCTGTTTATTACATCTAAGTCTGTTGTATGGGTTTCAGCTATTCTTTTGTTGGCTGTTTCCCCTCCATTACTTCTTTACAGGGATAAATCAAAAACAACAGCTTCTAAGATGAAACCATGGCAGGGTTATGCGCATGCTTGTGTAGTAGCCTTATCTGTATGGTTTTGCCGAGAAACCATTTTTGAAGCCCTCCAGTGGTGGAATGGAAGATCTCCTTCAGATGGTTTAATGTTGGGCTTCTGTATACTGTTGATTGGAGTGGCCTGTATTCCAATTGTGGCCATTCATTTCTCTCATGTTTTGTTTGCCAAGAGATGTCTGGTGTTGATAGCGGCAACTGGTCTACTTTTAATTTTGATGCAGCCACCTCTTCCTTTGTCACTGAGTTACCGGTCGGACATCATCAAAACTGCCCGTCATTCTGATGATGATATCTCAATTTATGGCTTTATAGCTGGGAAGCCTACCTGGCCCTCTTGGCTGCTTATTATTGCTATTTTGCTGACTCTAGCATCCATTACATCAATCATACCCATTAAATACATTGTTGAACTAAGGACAGTTTACTCCATTGCTATGGGTGTTGCCCTTGGTATCTACATTTCTGCTGAATACTTTGTCTGGGCATTTGTTCTGGATGTTCTCATTGTTGTCACTATGGTTTGTGCCTCTGTTTTTGTTGTCTTCACTCATATGCCCTCTGCTTCAAGCACAAAGCTTTTACCCTGGGTATTTGCTTTACTTGTAGCTCTTTTTCCAGTTACTTATCTTTTGGAGGGCCAACTAAGAATTAAAAATATTCTTGAAGATAGCGAGATTGGAAATTTGGGCGAGGAAGAAAAGAAGCTTACAACATTGCTAGCAATAGAGGGTGCCAGGACATCTCTTCTTGGTTTGTATGCAGCAATCTTCATGCTTATAGCCTTGGAAATAAAATATAAACTTACTTCAATTATGCGGGAAAAGGTCATTGATTCAAGTGGAATTAGACATAGTCATTCAGGTCAAAGTGTATCTTCTAGTTCCCTGCCAAGAGCGAGATTCATGCAGCACCGTCGGGCATCTACTGTTCCCTCCTTTACAATTAAAAAGATGGCTGCCGATGGAGCTTGGATGCCTTCTGTTGGCAACTTTGCAACAATATTGTGCTTTGCTATATGCTTGATTCTGAACGTTTACCTCACCGGTGGCTCAAACCGATCTATATTTTTCCTGGCTCCTATCCTTCTGCTGCTCAACCAGGATTCAGATTTTATTGCTGGTTTTAGCGACAAACACAGATATTTGCCAGTGACTGTTGCTATCTCAGTCTACTTTGTTGTAACTGCCTTGTATAGCATATGGGAAGATGTTTGGCAAGGTAACGGTGGATGGGGTCTTCAAATCGGTGGACCAGACTGGATTTTTATGGTGAAGAATTTAGCACTCCTTGTTCTTACATTTCCCAGTCATATAACTTTCAACAGGTTTGTATGGAGCCATACAAAACAGAGTGACATACAATCATGGATAACATTGCCCCTTAATCTGCTTCCTATAGCATGTACAGATGTTCTCAAGATTAAGATCTTGGGTATCTTAGGAGTTATATATTCACTGGCCCAGTATCTAATTACTAGGCAACAATATATCTCTGGTCTTAAGTACATCTAA

Protein sequence

>Msa1091140

MLQPRSLRPYISISSPSSNPNPNPNPRDSISRFNINNEFPSSSSSTSSFSSSRSLKNPTTFSHNTLIAISLIPAALFILDLSSTTVTTTLIIGLMISYILDLLNFKQPSFISLHLTLILSQFTFYFTSSPSLYTTFNSNLTLTILATFLTAHTTFLIGIWSSLQFKFLLLENPAIVVVLERLLFSCLPITASSLFTYAAVAAVGIQNSAYYLMFFNCCFYWLYSIPRISSFKMNNNARFHGGEAPKDSYILGPLESCVHALYLVFAPICFHIGSHYSVVFASYANFCDLVLLFFVPFLFLLYGSTRGGLWWVSENAANIRSIRVVNGFVALVFIVIALEVRVVFHSFGRYIQVPAPLNYVLVTITMLGGAGAAGAYAMGMVSDALSSVAFTTSAIVVSAAGAVVLGYPVLFLPMPAAAGFYLARFFEKKSLTSYFAFVVLGSLMVTWFVLHNFWDLNIWLAGMSLKSFCKLIVANAVLAMAIPGLTLLPPKINFLSEISLISHALLLCYIESRFFSYSSIYYYGFEDEVMYPSYMVVMTTLLGLALVRRLSVDHRIGGKAVWILTCLFISKLSMLFITSKSVVWVSAILLLAVSPPLLLYRDKSKTTASKMKPWQGYAHACVVALSVWFCRETIFEALQWWNGRSPSDGLMLGFCILLIGVACIPIVAIHFSHVLFAKRCLVLIAATGLLLILMQPPLPLSLSYRSDIIKTARHSDDDISIYGFIAGKPTWPSWLLIIAILLTLASITSIIPIKYIVELRTVYSIAMGVALGIYISAEYFVWAFVLDVLIVVTMVCASVFVVFTHMPSASSTKLLPWVFALLVALFPVTYLLEGQLRIKNILEDSEIGNLGEEEKKLTTLLAIEGARTSLLGLYAAIFMLIALEIKYKLTSIMREKVIDSSGIRHSHSGQSVSSSSLPRARFMQHRRASTVPSFTIKKMAADGAWMPSVGNFATILCFAICLILNVYLTGGSNRSIFFLAPILLLLNQDSDFIAGFSDKHRYLPVTVAISVYFVVTALYSIWEDVWQGNGGWGLQIGGPDWIFMVKNLALLVLTFPSHITFNRFVWSHTKQSDIQSWITLPLNLLPIACTDVLKIKILGILGVIYSLAQYLITRQQYISGLKYI*