Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091360 | XP_013447818.1 | 88.443 | 424 | 41 | 1 | 1 | 424 | 1 | 416 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091360 | sp|Q54I39|IST1L_DICDI | 33.333 | 177 | 115 | 3 | 1 | 176 | 1 | 175 | 1.43e-17 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091360 | A0A072TVN0 | 88.443 | 424 | 41 | 1 | 1 | 424 | 1 | 416 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1004830 | Msa1091360 | 0.831997 | 1.214994e-55 | -8.615850e-47 |
| Msa1047130 | Msa1091360 | 0.985280 | 4.445973e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091360 | MtrunA17_Chr7g0214961 | 88.443 | 424 | 41 | 1 | 1 | 424 | 1 | 416 | 0.0 | 757 |
| Msa1091360 | MtrunA17_Chr1g0210081 | 42.453 | 212 | 118 | 3 | 2 | 209 | 7 | 218 | 3.16e-49 | 172 |
| Msa1091360 | MtrunA17_Chr8g0370931 | 38.953 | 172 | 104 | 1 | 1 | 171 | 19 | 190 | 2.02e-34 | 133 |
| Msa1091360 | MtrunA17_Chr1g0209771 | 39.024 | 164 | 100 | 0 | 8 | 171 | 13 | 176 | 3.39e-34 | 130 |
| Msa1091360 | MtrunA17_Chr6g0487991 | 35.294 | 170 | 109 | 1 | 3 | 171 | 1 | 170 | 4.42e-30 | 124 |
| Msa1091360 | MtrunA17_Chr6g0464791 | 37.195 | 164 | 103 | 0 | 10 | 173 | 15 | 178 | 9.34e-30 | 122 |
| Msa1091360 | MtrunA17_Chr2g0324121 | 33.728 | 169 | 112 | 0 | 3 | 171 | 5 | 173 | 1.71e-25 | 109 |
| Msa1091360 | MtrunA17_Chr4g0042021 | 31.765 | 170 | 114 | 2 | 3 | 171 | 1 | 169 | 1.96e-18 | 86.7 |
| Msa1091360 | MtrunA17_Chr8g0390551 | 28.000 | 175 | 117 | 1 | 2 | 176 | 4 | 169 | 3.56e-18 | 87.4 |
| Msa1091360 | MtrunA17_Chr4g0004491 | 26.857 | 175 | 116 | 3 | 3 | 176 | 8 | 171 | 1.16e-15 | 78.2 |
| Msa1091360 | MtrunA17_Chr2g0331801 | 24.823 | 282 | 161 | 6 | 2 | 233 | 4 | 284 | 2.42e-14 | 74.7 |
| Msa1091360 | MtrunA17_Chr6g0485461 | 28.000 | 175 | 117 | 1 | 2 | 176 | 60 | 225 | 4.42e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1091360 | AT1G13340.1 | 45.161 | 186 | 101 | 1 | 3 | 187 | 8 | 193 | 1.00e-46 | 166 |
| Msa1091360 | AT4G35730.1 | 36.158 | 177 | 112 | 1 | 1 | 176 | 19 | 195 | 3.09e-31 | 125 |
| Msa1091360 | AT1G25420.1 | 37.195 | 164 | 103 | 0 | 8 | 171 | 13 | 176 | 3.18e-31 | 122 |
| Msa1091360 | AT1G34220.2 | 35.882 | 170 | 108 | 1 | 3 | 171 | 7 | 176 | 3.92e-30 | 124 |
| Msa1091360 | AT1G25420.4 | 36.242 | 149 | 95 | 0 | 23 | 171 | 1 | 149 | 2.34e-27 | 111 |
| Msa1091360 | AT2G19710.1 | 36.420 | 162 | 103 | 0 | 10 | 171 | 12 | 173 | 1.15e-26 | 114 |
| Msa1091360 | AT1G34220.1 | 35.135 | 148 | 95 | 1 | 2 | 148 | 6 | 153 | 8.86e-25 | 107 |
| Msa1091360 | AT4G29440.1 | 32.955 | 176 | 117 | 1 | 3 | 177 | 4 | 179 | 3.63e-23 | 103 |
| Msa1091360 | AT2G14830.1 | 28.977 | 176 | 125 | 0 | 3 | 178 | 5 | 180 | 1.65e-21 | 96.3 |
| Msa1091360 | AT1G25420.3 | 39.252 | 107 | 65 | 0 | 65 | 171 | 2 | 108 | 5.60e-21 | 92.4 |
| Msa1091360 | AT1G25420.2 | 39.252 | 107 | 65 | 0 | 65 | 171 | 2 | 108 | 5.60e-21 | 92.4 |
| Msa1091360 | AT4G29440.2 | 34.058 | 138 | 91 | 0 | 40 | 177 | 14 | 151 | 1.36e-19 | 92.4 |
| Msa1091360 | AT1G79910.1 | 25.714 | 175 | 121 | 1 | 2 | 176 | 4 | 169 | 1.50e-17 | 84.7 |
| Msa1091360 | AT4G32350.1 | 26.857 | 175 | 119 | 1 | 2 | 176 | 4 | 169 | 1.09e-16 | 83.2 |
| Msa1091360 | AT4G32350.3 | 26.857 | 175 | 119 | 1 | 2 | 176 | 4 | 169 | 1.09e-16 | 83.2 |
| Msa1091360 | AT1G52315.1 | 28.492 | 179 | 114 | 3 | 8 | 185 | 10 | 175 | 5.85e-16 | 79.3 |
| Msa1091360 | AT3G15490.1 | 30.159 | 126 | 85 | 2 | 40 | 162 | 8 | 133 | 5.90e-13 | 68.2 |
| Msa1091360 | AT1G79910.3 | 25.203 | 123 | 83 | 1 | 54 | 176 | 1 | 114 | 2.54e-11 | 65.1 |
| Msa1091360 | AT1G51900.1 | 26.178 | 191 | 120 | 5 | 3 | 178 | 1 | 185 | 7.48e-11 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATTATGGGTCTTAT+TGG | 0.200751 | 7_3:-6705247 | None:intergenic |
| TAACATCACTTGCAATTTCT+AGG | 0.220844 | 7_3:-6705195 | Msa1091360:CDS |
| AAGAAAATTGCTGCTGATAT+TGG | 0.279250 | 7_3:-6704404 | Msa1091360:CDS |
| GGACTTGCCGGTGGGGCTTC+CGG | 0.299961 | 7_3:-6702055 | Msa1091360:CDS |
| TCTGGTGCGGGTGGACTTGC+CGG | 0.311751 | 7_3:-6702067 | Msa1091360:CDS |
| GCAACATGCTTGATAAATTA+AGG | 0.324625 | 7_3:-6703427 | Msa1091360:CDS |
| GTTTCTACTTCAATTACATT+TGG | 0.324852 | 7_3:+6703857 | None:intergenic |
| TGCTGCTGTTCTACAAGCTT+TGG | 0.361871 | 7_3:-6703690 | Msa1091360:CDS |
| CTTCTTCACAGGCTATTAGA+TGG | 0.376493 | 7_3:-6703313 | Msa1091360:CDS |
| GGACCCTACATTGACAAATA+AGG | 0.380857 | 7_3:-6704360 | Msa1091360:intron |
| ATTACCTTATTTGTCAATGT+AGG | 0.408163 | 7_3:+6704356 | None:intergenic |
| AAATAATGAAGTGAACTCTA+AGG | 0.413519 | 7_3:-6704577 | Msa1091360:intron |
| GCATAAGCAACATGGGTAAC+CGG | 0.438123 | 7_3:+6702036 | None:intergenic |
| TCTTGTATCTTGTGCAACTC+TGG | 0.442407 | 7_3:+6704657 | None:intergenic |
| GGGCCCTAGGGAAAAGCATC+TGG | 0.442513 | 7_3:-6702085 | Msa1091360:CDS |
| CATCTAATAGCCTGTGAAGA+AGG | 0.449585 | 7_3:+6703314 | None:intergenic |
| ACTTCAATTACATTTGGCTT+AGG | 0.452785 | 7_3:+6703863 | None:intergenic |
| GTGCGGGTGGACTTGCCGGT+GGG | 0.453810 | 7_3:-6702063 | Msa1091360:CDS |
| GTTGCTTCCTTGAGCTCAAA+GGG | 0.457113 | 7_3:+6704720 | None:intergenic |
| GGATTTGTTTGAGACCTTTG+TGG | 0.459565 | 7_3:+6703287 | None:intergenic |
| GTTTCTCAACTCTTGAAACT+TGG | 0.463639 | 7_3:-6705118 | Msa1091360:CDS |
| AATTGTGACTCTTCCTTCCA+TGG | 0.464955 | 7_3:+6703542 | None:intergenic |
| TTACCTTATTTGTCAATGTA+GGG | 0.465365 | 7_3:+6704357 | None:intergenic |
| GGTGCGGGTGGACTTGCCGG+TGG | 0.475788 | 7_3:-6702064 | Msa1091360:CDS |
| ACCCCACAATGGAAATCAAA+AGG | 0.484451 | 7_3:-6704436 | Msa1091360:CDS |
| TGCGGGTGGACTTGCCGGTG+GGG | 0.485967 | 7_3:-6702062 | Msa1091360:CDS |
| GTGACATTCAGCCGGGCCCT+AGG | 0.488092 | 7_3:-6702098 | Msa1091360:CDS |
| TTGATGTGAATGAGGAAAGA+AGG | 0.497239 | 7_3:-6703730 | Msa1091360:CDS |
| ATACTCCAATCATAAGCAAA+AGG | 0.502883 | 7_3:-6703642 | Msa1091360:CDS |
| AATGTAGGGTCCTTCTCAAA+AGG | 0.508593 | 7_3:+6704371 | None:intergenic |
| ACAATTAAGTCAAAATCTAA+AGG | 0.510501 | 7_3:-6703525 | Msa1091360:CDS |
| GCCTTATCTTTGCATCCTCA+AGG | 0.511294 | 7_3:-6704692 | Msa1091360:CDS |
| TTTATCAACAGGTTGAGCAT+TGG | 0.513161 | 7_3:-6704985 | Msa1091360:intron |
| TAGGGAAAAGCATCTGGTGC+GGG | 0.513634 | 7_3:-6702079 | Msa1091360:CDS |
| TGCAACAAATATAGTTTCCA+AGG | 0.516218 | 7_3:-6703480 | Msa1091360:CDS |
| TGTTGCTTCCTTGAGCTCAA+AGG | 0.526671 | 7_3:+6704719 | None:intergenic |
| TGCTTACACGAACAAGAGCT+TGG | 0.532302 | 7_3:+6705086 | None:intergenic |
| GAATCTATTTGATGTGAATG+AGG | 0.532729 | 7_3:-6703738 | Msa1091360:CDS |
| GGAGTGTCCCTTTGAGCTCA+AGG | 0.542762 | 7_3:-6704727 | Msa1091360:CDS |
| TGTAGAAGTGACATTCAGCC+GGG | 0.543725 | 7_3:-6702105 | Msa1091360:intron |
| TGACATTCAGCCGGGCCCTA+GGG | 0.543799 | 7_3:-6702097 | Msa1091360:CDS |
| TCATGATCAAAATGTAATTG+AGG | 0.546813 | 7_3:-6703765 | Msa1091360:CDS |
| CTGTAGAAGTGACATTCAGC+CGG | 0.550833 | 7_3:-6702106 | Msa1091360:intron |
| TTATGCTGCTCAGAGTGCTA+AGG | 0.552668 | 7_3:-6702019 | Msa1091360:CDS |
| ATCTTTGCATCCTCAAGGTG+TGG | 0.556366 | 7_3:-6704687 | Msa1091360:CDS |
| TGGAAATTCTCCACACCTTG+AGG | 0.556562 | 7_3:+6704677 | None:intergenic |
| AAATAAATAAATATTATCCA+TGG | 0.558754 | 7_3:-6703559 | Msa1091360:CDS |
| AAGAACATACCCTTCTTCAC+AGG | 0.566772 | 7_3:-6703324 | Msa1091360:CDS |
| ATCTAATAGCCTGTGAAGAA+GGG | 0.568815 | 7_3:+6703315 | None:intergenic |
| TGGGTAACCGGAAGCCCCAC+CGG | 0.570792 | 7_3:+6702048 | None:intergenic |
| GATTGTAGAACAAAACATGT+TGG | 0.571196 | 7_3:-6704963 | Msa1091360:CDS |
| CATTTGGCTTAGGAACATGT+TGG | 0.573777 | 7_3:+6703873 | None:intergenic |
| GATCATGATCATGATCATGT+TGG | 0.574028 | 7_3:+6703780 | None:intergenic |
| TCTGAGCAGCATAAGCAACA+TGG | 0.578431 | 7_3:+6702028 | None:intergenic |
| ACCTTGAGGATGCAAAGATA+AGG | 0.588119 | 7_3:+6704691 | None:intergenic |
| GGAAAAGCATCTGGTGCGGG+TGG | 0.592677 | 7_3:-6702076 | Msa1091360:CDS |
| CACGAACAAGAGCTTGGTCA+TGG | 0.600356 | 7_3:+6705092 | None:intergenic |
| CTAGGGAAAAGCATCTGGTG+CGG | 0.602759 | 7_3:-6702080 | Msa1091360:CDS |
| AAATAAATATTATCCATGGA+AGG | 0.602987 | 7_3:-6703555 | Msa1091360:CDS |
| ATGTGAATGAGGAAAGAAGG+AGG | 0.624805 | 7_3:-6703727 | Msa1091360:CDS |
| CTGAGCAGCATAAGCAACAT+GGG | 0.628394 | 7_3:+6702029 | None:intergenic |
| TTCATCAAAACACCCCACAA+TGG | 0.631056 | 7_3:-6704447 | Msa1091360:CDS |
| CTATTAGATGGAATCCACAA+AGG | 0.677198 | 7_3:-6703301 | Msa1091360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTAGAATATTTTGA+TGG | + | chr7_3:6702746-6702765 | None:intergenic | 10.0% |
| !!! | AATAATTTAGCTTTATTTTA+TGG | + | chr7_3:6703040-6703059 | None:intergenic | 10.0% |
| !! | AAATAAATAAATATTATCCA+TGG | - | chr7_3:6703690-6703709 | Msa1091360:CDS | 10.0% |
| !! | TCAATAATATAATATATTCT+AGG | + | chr7_3:6704329-6704348 | None:intergenic | 10.0% |
| !!! | TGATGTTAAATTTTTCAATT+TGG | + | chr7_3:6702042-6702061 | None:intergenic | 15.0% |
| !! | TATATTGTTTATTTATCAAC+AGG | - | chr7_3:6702253-6702272 | Msa1091360:intron | 15.0% |
| !! | TTAGTTACTATTTCAAAAAT+AGG | - | chr7_3:6702500-6702519 | Msa1091360:intron | 15.0% |
| !! | TAGTTACTATTTCAAAAATA+GGG | - | chr7_3:6702501-6702520 | Msa1091360:intron | 15.0% |
| !!! | AGATTTTGACTTTAAAATTT+GGG | - | chr7_3:6702614-6702633 | Msa1091360:intron | 15.0% |
| !!! | TCAATAATATAGTTTCTTTT+TGG | + | chr7_3:6703644-6703663 | None:intergenic | 15.0% |
| !! | TATTGATCTTAAAGAAAAAT+TGG | - | chr7_3:6703658-6703677 | Msa1091360:CDS | 15.0% |
| !!! | AAATATTTTTACAAAACTTG+AGG | - | chr7_3:6704464-6704483 | Msa1091360:CDS | 15.0% |
| !! | TAATAGTCAAATTGTATATT+TGG | - | chr7_3:6704760-6704779 | Msa1091360:intron | 15.0% |
| !!! | AAATAAGTTATATTTGTTAC+CGG | + | chr7_3:6704901-6704920 | None:intergenic | 15.0% |
| !!! | GAGATTTTGACTTTAAAATT+TGG | - | chr7_3:6702613-6702632 | Msa1091360:intron | 20.0% |
| !! | GTATACTCTTGAAATAAATT+AGG | + | chr7_3:6702714-6702733 | None:intergenic | 20.0% |
| !! | AGAACATATTTCACTATATA+TGG | + | chr7_3:6703249-6703268 | None:intergenic | 20.0% |
| !! | TAATATATGTATACTATTGC+AGG | - | chr7_3:6703268-6703287 | Msa1091360:intron | 20.0% |
| !! | AAATAAATATTATCCATGGA+AGG | - | chr7_3:6703694-6703713 | Msa1091360:CDS | 20.0% |
| !! | ACAATTAAGTCAAAATCTAA+AGG | - | chr7_3:6703724-6703743 | Msa1091360:CDS | 20.0% |
| !! | ACCAATTAAACTATAACAAA+TGG | - | chr7_3:6704261-6704280 | Msa1091360:intron | 20.0% |
| !!! | ACCATTTGTTATAGTTTAAT+TGG | + | chr7_3:6704265-6704284 | None:intergenic | 20.0% |
| !! | CATAACATAATAAAACATGT+AGG | - | chr7_3:6704648-6704667 | Msa1091360:CDS | 20.0% |
| !!! | GTCAAATGCAATTTTAATAA+AGG | - | chr7_3:6704811-6704830 | Msa1091360:intron | 20.0% |
| !!! | AAATGCAATTTTAATAAAGG+CGG | - | chr7_3:6704814-6704833 | Msa1091360:intron | 20.0% |
| !! | TGTTATCATAACAGTATTTA+TGG | - | chr7_3:6704855-6704874 | Msa1091360:intron | 20.0% |
| !! | AAACTTTACTAAAGAATCAT+TGG | - | chr7_3:6705015-6705034 | Msa1091360:intron | 20.0% |
| ! | AAATAATGAAGTGAACTCTA+AGG | - | chr7_3:6702672-6702691 | Msa1091360:intron | 25.0% |
| !!! | TCTAAGGTATAGATTTTATG+AGG | - | chr7_3:6702688-6702707 | Msa1091360:intron | 25.0% |
| !! | TTACCTTATTTGTCAATGTA+GGG | + | chr7_3:6702895-6702914 | None:intergenic | 25.0% |
| !! | ATTACCTTATTTGTCAATGT+AGG | + | chr7_3:6702896-6702915 | None:intergenic | 25.0% |
| !!! | TTTCTACTTCATGTTGTTTT+TGG | + | chr7_3:6703310-6703329 | None:intergenic | 25.0% |
| ! | GTTTCTACTTCAATTACATT+TGG | + | chr7_3:6703395-6703414 | None:intergenic | 25.0% |
| !! | TTCAGCACTACTATAATTTT+TGG | + | chr7_3:6703417-6703436 | None:intergenic | 25.0% |
| ! | TCATGATCAAAATGTAATTG+AGG | - | chr7_3:6703484-6703503 | Msa1091360:CDS | 25.0% |
| ! | GATCTTAAAGAAAAATTGGA+AGG | - | chr7_3:6703662-6703681 | Msa1091360:CDS | 25.0% |
| !!! | GAATAGGTATTTTTGAAAAC+CGG | - | chr7_3:6704080-6704099 | Msa1091360:intron | 25.0% |
| !!! | TATTCATTTATTTTGTCACC+TGG | - | chr7_3:6704224-6704243 | Msa1091360:intron | 25.0% |
| ! | TTATGCAATTGAACTTAAGA+TGG | - | chr7_3:6704586-6704605 | Msa1091360:CDS | 25.0% |
| ! | CATAATAAAACATGTAGGTT+TGG | - | chr7_3:6704653-6704672 | Msa1091360:CDS | 25.0% |
| ! | TTAGATAACATTCTACATGA+AGG | + | chr7_3:6704743-6704762 | None:intergenic | 25.0% |
| ! | AAAAAACTTACCATCTTTAG+TGG | - | chr7_3:6704938-6704957 | Msa1091360:CDS | 25.0% |
| ! | GAATCATTGGAAAATAATGT+TGG | - | chr7_3:6705028-6705047 | Msa1091360:intron | 25.0% |
| ! | TTGGCTAGTAAAATAATCAT+TGG | - | chr7_3:6705047-6705066 | Msa1091360:intron | 25.0% |
| TAACATCACTTGCAATTTCT+AGG | - | chr7_3:6702054-6702073 | Msa1091360:CDS | 30.0% | |
| GATTGTAGAACAAAACATGT+TGG | - | chr7_3:6702286-6702305 | Msa1091360:intron | 30.0% | |
| !!! | TTCCTTTTGATTTCCATTGT+GGG | + | chr7_3:6702818-6702837 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGATTTCCATTG+TGG | + | chr7_3:6702819-6702838 | None:intergenic | 30.0% |
| AAGAAAATTGCTGCTGATAT+TGG | - | chr7_3:6702845-6702864 | Msa1091360:intron | 30.0% | |
| TTGTTCAAAGATGATCATAG+TGG | + | chr7_3:6702950-6702969 | None:intergenic | 30.0% | |
| GTTGTTTACATAAGCTATCA+TGG | - | chr7_3:6703078-6703097 | Msa1091360:intron | 30.0% | |
| CATGAAGTAGAAACCAAAAA+TGG | - | chr7_3:6703317-6703336 | Msa1091360:CDS | 30.0% | |
| ! | ATCAACACTACTACCATTTT+TGG | + | chr7_3:6703333-6703352 | None:intergenic | 30.0% |
| ! | ACTTCAATTACATTTGGCTT+AGG | + | chr7_3:6703389-6703408 | None:intergenic | 30.0% |
| GAATCTATTTGATGTGAATG+AGG | - | chr7_3:6703511-6703530 | Msa1091360:CDS | 30.0% | |
| ATACTCCAATCATAAGCAAA+AGG | - | chr7_3:6703607-6703626 | Msa1091360:CDS | 30.0% | |
| ! | TACATCCTTTTGCTTATGAT+TGG | + | chr7_3:6703615-6703634 | None:intergenic | 30.0% |
| TGCAACAAATATAGTTTCCA+AGG | - | chr7_3:6703769-6703788 | Msa1091360:CDS | 30.0% | |
| GCAACATGCTTGATAAATTA+AGG | - | chr7_3:6703822-6703841 | Msa1091360:CDS | 30.0% | |
| GGAAAATATGTTCTACTTGT+AGG | + | chr7_3:6703986-6704005 | None:intergenic | 30.0% | |
| ! | TGATGTGTATGCATTTTCTT+TGG | + | chr7_3:6704007-6704026 | None:intergenic | 30.0% |
| !! | AGAACTTGTTGAACTAATAG+CGG | + | chr7_3:6704181-6704200 | None:intergenic | 30.0% |
| ACTATAACAAATGGTCTCAT+TGG | - | chr7_3:6704270-6704289 | Msa1091360:intron | 30.0% | |
| ! | CATTGTTGATGAATAATCTC+CGG | - | chr7_3:6704879-6704898 | Msa1091360:intron | 30.0% |
| GTTTCTCAACTCTTGAAACT+TGG | - | chr7_3:6702131-6702150 | Msa1091360:intron | 35.0% | |
| ! | TTTATCAACAGGTTGAGCAT+TGG | - | chr7_3:6702264-6702283 | Msa1091360:intron | 35.0% |
| ! | GTACTTGAGCTCTTTCTTTT+AGG | + | chr7_3:6702346-6702365 | None:intergenic | 35.0% |
| !!! | TCCTTTTGATTTCCATTGTG+GGG | + | chr7_3:6702817-6702836 | None:intergenic | 35.0% |
| !! | AGTTACTTTGCCTTTTGAGA+AGG | - | chr7_3:6702868-6702887 | Msa1091360:intron | 35.0% |
| TGAGCTTAATAAGTCACATG+AGG | + | chr7_3:6703177-6703196 | None:intergenic | 35.0% | |
| GATCATGATCATGATCATGT+TGG | + | chr7_3:6703472-6703491 | None:intergenic | 35.0% | |
| TTGATGTGAATGAGGAAAGA+AGG | - | chr7_3:6703519-6703538 | Msa1091360:CDS | 35.0% | |
| AGTTTCCAAGGAAAAAGTGA+AGG | - | chr7_3:6703781-6703800 | Msa1091360:CDS | 35.0% | |
| !!! | ATTCTCCTTCACTTTTTCCT+TGG | + | chr7_3:6703789-6703808 | None:intergenic | 35.0% |
| ATCTAATAGCCTGTGAAGAA+GGG | + | chr7_3:6703937-6703956 | None:intergenic | 35.0% | |
| CTATTAGATGGAATCCACAA+AGG | - | chr7_3:6703948-6703967 | Msa1091360:CDS | 35.0% | |
| GCATACACATCATCAACATT+TGG | - | chr7_3:6704015-6704034 | Msa1091360:intron | 35.0% | |
| CACATCATCAACATTTGGAT+TGG | - | chr7_3:6704020-6704039 | Msa1091360:intron | 35.0% | |
| TATTCATTAGTGTGCTCATC+GGG | + | chr7_3:6704065-6704084 | None:intergenic | 35.0% | |
| CTATTCATTAGTGTGCTCAT+CGG | + | chr7_3:6704066-6704085 | None:intergenic | 35.0% | |
| !! | TTACGATTTCTAGTTCGATC+CGG | + | chr7_3:6704102-6704121 | None:intergenic | 35.0% |
| AAATCGTAAGGTTCGTCAAT+TGG | - | chr7_3:6704113-6704132 | Msa1091360:intron | 35.0% | |
| GTACCTTAGTTTAGTTGAAC+TGG | - | chr7_3:6704150-6704169 | Msa1091360:intron | 35.0% | |
| CAACCAGTTCAACTAAACTA+AGG | + | chr7_3:6704156-6704175 | None:intergenic | 35.0% | |
| CAATTCGACATGAATGGTTA+AGG | + | chr7_3:6704397-6704416 | None:intergenic | 35.0% | |
| TAAGCTCAATTCGACATGAA+TGG | + | chr7_3:6704403-6704422 | None:intergenic | 35.0% | |
| ! | TTGTTCACTATGCTTGCTAA+TGG | - | chr7_3:6704554-6704573 | Msa1091360:intron | 35.0% |
| ! | TCAAAAAGAGCACACATGCA+TGG | - | chr7_3:6702447-6702466 | Msa1091360:intron | 40.0% |
| ACCTTGAGGATGCAAAGATA+AGG | + | chr7_3:6702561-6702580 | None:intergenic | 40.0% | |
| TCTTGTATCTTGTGCAACTC+TGG | + | chr7_3:6702595-6702614 | None:intergenic | 40.0% | |
| TTCATCAAAACACCCCACAA+TGG | - | chr7_3:6702802-6702821 | Msa1091360:intron | 40.0% | |
| ACCCCACAATGGAAATCAAA+AGG | - | chr7_3:6702813-6702832 | Msa1091360:intron | 40.0% | |
| AATGTAGGGTCCTTCTCAAA+AGG | + | chr7_3:6702881-6702900 | None:intergenic | 40.0% | |
| GGACCCTACATTGACAAATA+AGG | - | chr7_3:6702889-6702908 | Msa1091360:intron | 40.0% | |
| AGTCACATGAGGCTATTTGT+GGG | + | chr7_3:6703166-6703185 | None:intergenic | 40.0% | |
| AAGTCACATGAGGCTATTTG+TGG | + | chr7_3:6703167-6703186 | None:intergenic | 40.0% | |
| ! | CATTTGGCTTAGGAACATGT+TGG | + | chr7_3:6703379-6703398 | None:intergenic | 40.0% |
| ATGTGAATGAGGAAAGAAGG+AGG | - | chr7_3:6703522-6703541 | Msa1091360:CDS | 40.0% | |
| AATTGTGACTCTTCCTTCCA+TGG | + | chr7_3:6703710-6703729 | None:intergenic | 40.0% | |
| AAGAACATACCCTTCTTCAC+AGG | - | chr7_3:6703925-6703944 | Msa1091360:CDS | 40.0% | |
| CATCTAATAGCCTGTGAAGA+AGG | + | chr7_3:6703938-6703957 | None:intergenic | 40.0% | |
| CTTCTTCACAGGCTATTAGA+TGG | - | chr7_3:6703936-6703955 | Msa1091360:CDS | 40.0% | |
| ! | GGATTTGTTTGAGACCTTTG+TGG | + | chr7_3:6703965-6703984 | None:intergenic | 40.0% |
| ATTGGAAGATGATGTCAGTC+AGG | - | chr7_3:6704038-6704057 | Msa1091360:intron | 40.0% | |
| CGATGAGCACACTAATGAAT+AGG | - | chr7_3:6704064-6704083 | Msa1091360:intron | 40.0% | |
| GGATCGAACTAGAAATCGTA+AGG | - | chr7_3:6704101-6704120 | Msa1091360:intron | 40.0% | |
| TGCAATTGACGTTTGAATCG+AGG | - | chr7_3:6704365-6704384 | Msa1091360:CDS | 40.0% | |
| GCAATTGACGTTTGAATCGA+GGG | - | chr7_3:6704366-6704385 | Msa1091360:CDS | 40.0% | |
| TGCTTACACGAACAAGAGCT+TGG | + | chr7_3:6702166-6702185 | None:intergenic | 45.0% | |
| GTTGCTTCCTTGAGCTCAAA+GGG | + | chr7_3:6702532-6702551 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTTGAGCTCAA+AGG | + | chr7_3:6702533-6702552 | None:intergenic | 45.0% |
| GCCTTATCTTTGCATCCTCA+AGG | - | chr7_3:6702557-6702576 | Msa1091360:intron | 45.0% | |
| ATCTTTGCATCCTCAAGGTG+TGG | - | chr7_3:6702562-6702581 | Msa1091360:intron | 45.0% | |
| TGGAAATTCTCCACACCTTG+AGG | + | chr7_3:6702575-6702594 | None:intergenic | 45.0% | |
| TGCTGCTGTTCTACAAGCTT+TGG | - | chr7_3:6703559-6703578 | Msa1091360:CDS | 45.0% | |
| GAGAGAGACTCCACTAAAGA+TGG | + | chr7_3:6704951-6704970 | None:intergenic | 45.0% | |
| CTGTAGAAGTGACATTCAGC+CGG | - | chr7_3:6705143-6705162 | Msa1091360:CDS | 45.0% | |
| TGTAGAAGTGACATTCAGCC+GGG | - | chr7_3:6705144-6705163 | Msa1091360:CDS | 45.0% | |
| GCATAAGCAACATGGGTAAC+CGG | + | chr7_3:6705216-6705235 | None:intergenic | 45.0% | |
| CTGAGCAGCATAAGCAACAT+GGG | + | chr7_3:6705223-6705242 | None:intergenic | 45.0% | |
| TCTGAGCAGCATAAGCAACA+TGG | + | chr7_3:6705224-6705243 | None:intergenic | 45.0% | |
| ! | TTATGCTGCTCAGAGTGCTA+AGG | - | chr7_3:6705230-6705249 | Msa1091360:CDS | 45.0% |
| !! | TGTAAAATAAAAATAAAAAT+TGG | + | chr7_3:6702189-6702208 | None:intergenic | 5.0% |
| CACGAACAAGAGCTTGGTCA+TGG | + | chr7_3:6702160-6702179 | None:intergenic | 50.0% | |
| GTCACCTGGTTCAACAACGT+TGG | - | chr7_3:6704238-6704257 | Msa1091360:intron | 50.0% | |
| TGGTCCAACGTTGTTGAACC+AGG | + | chr7_3:6704245-6704264 | None:intergenic | 50.0% | |
| ! | GCACCAGATGCTTTTCCCTA+GGG | + | chr7_3:6705170-6705189 | None:intergenic | 50.0% |
| !! | CTAGGGAAAAGCATCTGGTG+CGG | - | chr7_3:6705169-6705188 | Msa1091360:CDS | 50.0% |
| !! | TAGGGAAAAGCATCTGGTGC+GGG | - | chr7_3:6705170-6705189 | Msa1091360:CDS | 50.0% |
| ! | GGAGTGTCCCTTTGAGCTCA+AGG | - | chr7_3:6702522-6702541 | Msa1091360:intron | 55.0% |
| ! | AGATGCTTTTCCCTAGGGCC+CGG | + | chr7_3:6705165-6705184 | None:intergenic | 55.0% |
| ! | CGCACCAGATGCTTTTCCCT+AGG | + | chr7_3:6705171-6705190 | None:intergenic | 55.0% |
| TGACATTCAGCCGGGCCCTA+GGG | - | chr7_3:6705152-6705171 | Msa1091360:CDS | 60.0% | |
| !! | GGGCCCTAGGGAAAAGCATC+TGG | - | chr7_3:6705164-6705183 | Msa1091360:CDS | 60.0% |
| !! | GGAAAAGCATCTGGTGCGGG+TGG | - | chr7_3:6705173-6705192 | Msa1091360:CDS | 60.0% |
| GTGACATTCAGCCGGGCCCT+AGG | - | chr7_3:6705151-6705170 | Msa1091360:CDS | 65.0% | |
| ! | TCTGGTGCGGGTGGACTTGC+CGG | - | chr7_3:6705182-6705201 | Msa1091360:CDS | 65.0% |
| TGGGTAACCGGAAGCCCCAC+CGG | + | chr7_3:6705204-6705223 | None:intergenic | 65.0% | |
| ! | GTGCGGGTGGACTTGCCGGT+GGG | - | chr7_3:6705186-6705205 | Msa1091360:CDS | 70.0% |
| ! | TGCGGGTGGACTTGCCGGTG+GGG | - | chr7_3:6705187-6705206 | Msa1091360:CDS | 70.0% |
| GGACTTGCCGGTGGGGCTTC+CGG | - | chr7_3:6705194-6705213 | Msa1091360:CDS | 70.0% | |
| ! | GGTGCGGGTGGACTTGCCGG+TGG | - | chr7_3:6705185-6705204 | Msa1091360:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 6702011 | 6705260 | 6702011 | ID=Msa1091360;Name=Msa1091360 |
| chr7_3 | mRNA | 6702011 | 6705260 | 6702011 | ID=Msa1091360-mRNA-1;Parent=Msa1091360;Name=Msa1091360-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.83|1|1|6|0|452 |
| chr7_3 | exon | 6705093 | 6705260 | 6705093 | ID=Msa1091360-mRNA-1:exon:2118;Parent=Msa1091360-mRNA-1 |
| chr7_3 | exon | 6704893 | 6704996 | 6704893 | ID=Msa1091360-mRNA-1:exon:2117;Parent=Msa1091360-mRNA-1 |
| chr7_3 | exon | 6704578 | 6704749 | 6704578 | ID=Msa1091360-mRNA-1:exon:2116;Parent=Msa1091360-mRNA-1 |
| chr7_3 | exon | 6704361 | 6704483 | 6704361 | ID=Msa1091360-mRNA-1:exon:2115;Parent=Msa1091360-mRNA-1 |
| chr7_3 | exon | 6703302 | 6703981 | 6703302 | ID=Msa1091360-mRNA-1:exon:2114;Parent=Msa1091360-mRNA-1 |
| chr7_3 | exon | 6702011 | 6702122 | 6702011 | ID=Msa1091360-mRNA-1:exon:2113;Parent=Msa1091360-mRNA-1 |
| chr7_3 | CDS | 6705093 | 6705260 | 6705093 | ID=Msa1091360-mRNA-1:cds;Parent=Msa1091360-mRNA-1 |
| chr7_3 | CDS | 6704893 | 6704996 | 6704893 | ID=Msa1091360-mRNA-1:cds;Parent=Msa1091360-mRNA-1 |
| chr7_3 | CDS | 6704578 | 6704749 | 6704578 | ID=Msa1091360-mRNA-1:cds;Parent=Msa1091360-mRNA-1 |
| chr7_3 | CDS | 6704361 | 6704483 | 6704361 | ID=Msa1091360-mRNA-1:cds;Parent=Msa1091360-mRNA-1 |
| chr7_3 | CDS | 6703302 | 6703981 | 6703302 | ID=Msa1091360-mRNA-1:cds;Parent=Msa1091360-mRNA-1 |
| chr7_3 | CDS | 6702011 | 6702122 | 6702011 | ID=Msa1091360-mRNA-1:cds;Parent=Msa1091360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
