Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047130 | XP_013447818.1 | 88.443 | 424 | 41 | 1 | 1 | 424 | 1 | 416 | 0.0 | 757 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047130 | sp|Q54I39|IST1L_DICDI | 33.333 | 177 | 115 | 3 | 1 | 176 | 1 | 175 | 1.43e-17 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047130 | A0A072TVN0 | 88.443 | 424 | 41 | 1 | 1 | 424 | 1 | 416 | 0.0 | 757 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1047130 | 0.812165 | 4.862222e-51 | -8.615850e-47 |
| Msa0092220 | Msa1047130 | 0.812744 | 3.633798e-51 | -8.615850e-47 |
| Msa0177320 | Msa1047130 | 0.804771 | 1.841172e-49 | -8.615850e-47 |
| Msa1004830 | Msa1047130 | 0.835969 | 1.231060e-56 | -8.615850e-47 |
| Msa1047130 | Msa1091360 | 0.985280 | 4.445973e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047130 | MtrunA17_Chr7g0214961 | 88.443 | 424 | 41 | 1 | 1 | 424 | 1 | 416 | 0.0 | 757 |
| Msa1047130 | MtrunA17_Chr1g0210081 | 42.453 | 212 | 118 | 3 | 2 | 209 | 7 | 218 | 3.16e-49 | 172 |
| Msa1047130 | MtrunA17_Chr8g0370931 | 38.953 | 172 | 104 | 1 | 1 | 171 | 19 | 190 | 2.02e-34 | 133 |
| Msa1047130 | MtrunA17_Chr1g0209771 | 39.024 | 164 | 100 | 0 | 8 | 171 | 13 | 176 | 3.39e-34 | 130 |
| Msa1047130 | MtrunA17_Chr6g0487991 | 35.294 | 170 | 109 | 1 | 3 | 171 | 1 | 170 | 4.42e-30 | 124 |
| Msa1047130 | MtrunA17_Chr6g0464791 | 37.195 | 164 | 103 | 0 | 10 | 173 | 15 | 178 | 9.34e-30 | 122 |
| Msa1047130 | MtrunA17_Chr2g0324121 | 33.728 | 169 | 112 | 0 | 3 | 171 | 5 | 173 | 1.71e-25 | 109 |
| Msa1047130 | MtrunA17_Chr4g0042021 | 31.765 | 170 | 114 | 2 | 3 | 171 | 1 | 169 | 1.96e-18 | 86.7 |
| Msa1047130 | MtrunA17_Chr8g0390551 | 28.000 | 175 | 117 | 1 | 2 | 176 | 4 | 169 | 3.56e-18 | 87.4 |
| Msa1047130 | MtrunA17_Chr4g0004491 | 26.857 | 175 | 116 | 3 | 3 | 176 | 8 | 171 | 1.16e-15 | 78.2 |
| Msa1047130 | MtrunA17_Chr2g0331801 | 24.823 | 282 | 161 | 6 | 2 | 233 | 4 | 284 | 2.42e-14 | 74.7 |
| Msa1047130 | MtrunA17_Chr6g0485461 | 28.000 | 175 | 117 | 1 | 2 | 176 | 60 | 225 | 4.42e-14 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1047130 | AT1G13340.1 | 45.161 | 186 | 101 | 1 | 3 | 187 | 8 | 193 | 1.00e-46 | 166 |
| Msa1047130 | AT4G35730.1 | 36.158 | 177 | 112 | 1 | 1 | 176 | 19 | 195 | 3.09e-31 | 125 |
| Msa1047130 | AT1G25420.1 | 37.195 | 164 | 103 | 0 | 8 | 171 | 13 | 176 | 3.18e-31 | 122 |
| Msa1047130 | AT1G34220.2 | 35.882 | 170 | 108 | 1 | 3 | 171 | 7 | 176 | 3.92e-30 | 124 |
| Msa1047130 | AT1G25420.4 | 36.242 | 149 | 95 | 0 | 23 | 171 | 1 | 149 | 2.34e-27 | 111 |
| Msa1047130 | AT2G19710.1 | 36.420 | 162 | 103 | 0 | 10 | 171 | 12 | 173 | 1.15e-26 | 114 |
| Msa1047130 | AT1G34220.1 | 35.135 | 148 | 95 | 1 | 2 | 148 | 6 | 153 | 8.86e-25 | 107 |
| Msa1047130 | AT4G29440.1 | 32.955 | 176 | 117 | 1 | 3 | 177 | 4 | 179 | 3.63e-23 | 103 |
| Msa1047130 | AT2G14830.1 | 28.977 | 176 | 125 | 0 | 3 | 178 | 5 | 180 | 1.65e-21 | 96.3 |
| Msa1047130 | AT1G25420.3 | 39.252 | 107 | 65 | 0 | 65 | 171 | 2 | 108 | 5.60e-21 | 92.4 |
| Msa1047130 | AT1G25420.2 | 39.252 | 107 | 65 | 0 | 65 | 171 | 2 | 108 | 5.60e-21 | 92.4 |
| Msa1047130 | AT4G29440.2 | 34.058 | 138 | 91 | 0 | 40 | 177 | 14 | 151 | 1.36e-19 | 92.4 |
| Msa1047130 | AT1G79910.1 | 25.714 | 175 | 121 | 1 | 2 | 176 | 4 | 169 | 1.50e-17 | 84.7 |
| Msa1047130 | AT4G32350.1 | 26.857 | 175 | 119 | 1 | 2 | 176 | 4 | 169 | 1.09e-16 | 83.2 |
| Msa1047130 | AT4G32350.3 | 26.857 | 175 | 119 | 1 | 2 | 176 | 4 | 169 | 1.09e-16 | 83.2 |
| Msa1047130 | AT1G52315.1 | 28.492 | 179 | 114 | 3 | 8 | 185 | 10 | 175 | 5.85e-16 | 79.3 |
| Msa1047130 | AT3G15490.1 | 30.159 | 126 | 85 | 2 | 40 | 162 | 8 | 133 | 5.90e-13 | 68.2 |
| Msa1047130 | AT1G79910.3 | 25.203 | 123 | 83 | 1 | 54 | 176 | 1 | 114 | 2.54e-11 | 65.1 |
| Msa1047130 | AT1G51900.1 | 26.178 | 191 | 120 | 5 | 3 | 178 | 1 | 185 | 7.48e-11 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATTATGGGTCTTAT+TGG | 0.200751 | 7_2:-7838971 | None:intergenic |
| TAACATCACTTGCAATTTCT+AGG | 0.220844 | 7_2:-7838919 | Msa1047130:CDS |
| AAGAAAATTGCTGCTGATAT+TGG | 0.279250 | 7_2:-7838128 | Msa1047130:CDS |
| GGACTTGCCGGTGGGGCTTC+CGG | 0.299961 | 7_2:-7835779 | Msa1047130:CDS |
| TCTGGTGCGGGTGGACTTGC+CGG | 0.311751 | 7_2:-7835791 | Msa1047130:CDS |
| GCAACATGCTTGATAAATTA+AGG | 0.324625 | 7_2:-7837151 | Msa1047130:CDS |
| GTTTCTACTTCAATTACATT+TGG | 0.324852 | 7_2:+7837581 | None:intergenic |
| TGCTGCTGTTCTACAAGCTT+TGG | 0.361871 | 7_2:-7837414 | Msa1047130:CDS |
| CTTCTTCACAGGCTATTAGA+TGG | 0.376493 | 7_2:-7837037 | Msa1047130:CDS |
| GGACCCTACATTGACAAATA+AGG | 0.380857 | 7_2:-7838084 | Msa1047130:intron |
| ATTACCTTATTTGTCAATGT+AGG | 0.408163 | 7_2:+7838080 | None:intergenic |
| AAATAATGAAGTGAACTCTA+AGG | 0.413519 | 7_2:-7838301 | Msa1047130:intron |
| GCATAAGCAACATGGGTAAC+CGG | 0.438123 | 7_2:+7835760 | None:intergenic |
| TCTTGTATCTTGTGCAACTC+TGG | 0.442407 | 7_2:+7838381 | None:intergenic |
| GGGCCCTAGGGAAAAGCATC+TGG | 0.442513 | 7_2:-7835809 | Msa1047130:CDS |
| CATCTAATAGCCTGTGAAGA+AGG | 0.449585 | 7_2:+7837038 | None:intergenic |
| ACTTCAATTACATTTGGCTT+AGG | 0.452785 | 7_2:+7837587 | None:intergenic |
| GTGCGGGTGGACTTGCCGGT+GGG | 0.453810 | 7_2:-7835787 | Msa1047130:CDS |
| GTTGCTTCCTTGAGCTCAAA+GGG | 0.457113 | 7_2:+7838444 | None:intergenic |
| GGATTTGTTTGAGACCTTTG+TGG | 0.459565 | 7_2:+7837011 | None:intergenic |
| GTTTCTCAACTCTTGAAACT+TGG | 0.463639 | 7_2:-7838842 | Msa1047130:CDS |
| AATTGTGACTCTTCCTTCCA+TGG | 0.464955 | 7_2:+7837266 | None:intergenic |
| TTACCTTATTTGTCAATGTA+GGG | 0.465365 | 7_2:+7838081 | None:intergenic |
| GGTGCGGGTGGACTTGCCGG+TGG | 0.475788 | 7_2:-7835788 | Msa1047130:CDS |
| ACCCCACAATGGAAATCAAA+AGG | 0.484451 | 7_2:-7838160 | Msa1047130:CDS |
| TGCGGGTGGACTTGCCGGTG+GGG | 0.485967 | 7_2:-7835786 | Msa1047130:CDS |
| GTGACATTCAGCCGGGCCCT+AGG | 0.488092 | 7_2:-7835822 | Msa1047130:CDS |
| TTGATGTGAATGAGGAAAGA+AGG | 0.497239 | 7_2:-7837454 | Msa1047130:CDS |
| ATACTCCAATCATAAGCAAA+AGG | 0.502883 | 7_2:-7837366 | Msa1047130:CDS |
| AATGTAGGGTCCTTCTCAAA+AGG | 0.508593 | 7_2:+7838095 | None:intergenic |
| ACAATTAAGTCAAAATCTAA+AGG | 0.510501 | 7_2:-7837249 | Msa1047130:CDS |
| GCCTTATCTTTGCATCCTCA+AGG | 0.511294 | 7_2:-7838416 | Msa1047130:CDS |
| TTTATCAACAGGTTGAGCAT+TGG | 0.513161 | 7_2:-7838709 | Msa1047130:intron |
| TAGGGAAAAGCATCTGGTGC+GGG | 0.513634 | 7_2:-7835803 | Msa1047130:CDS |
| TGCAACAAATATAGTTTCCA+AGG | 0.516218 | 7_2:-7837204 | Msa1047130:CDS |
| TGTTGCTTCCTTGAGCTCAA+AGG | 0.526671 | 7_2:+7838443 | None:intergenic |
| TGCTTACACGAACAAGAGCT+TGG | 0.532302 | 7_2:+7838810 | None:intergenic |
| GAATCTATTTGATGTGAATG+AGG | 0.532729 | 7_2:-7837462 | Msa1047130:CDS |
| GGAGTGTCCCTTTGAGCTCA+AGG | 0.542762 | 7_2:-7838451 | Msa1047130:CDS |
| TGTAGAAGTGACATTCAGCC+GGG | 0.543725 | 7_2:-7835829 | Msa1047130:intron |
| TGACATTCAGCCGGGCCCTA+GGG | 0.543799 | 7_2:-7835821 | Msa1047130:CDS |
| TCATGATCAAAATGTAATTG+AGG | 0.546813 | 7_2:-7837489 | Msa1047130:CDS |
| CTGTAGAAGTGACATTCAGC+CGG | 0.550833 | 7_2:-7835830 | Msa1047130:intron |
| TTATGCTGCTCAGAGTGCTA+AGG | 0.552668 | 7_2:-7835743 | Msa1047130:CDS |
| ATCTTTGCATCCTCAAGGTG+TGG | 0.556366 | 7_2:-7838411 | Msa1047130:CDS |
| TGGAAATTCTCCACACCTTG+AGG | 0.556562 | 7_2:+7838401 | None:intergenic |
| AAATAAATAAATATTATCCA+TGG | 0.558754 | 7_2:-7837283 | Msa1047130:CDS |
| AAGAACATACCCTTCTTCAC+AGG | 0.566772 | 7_2:-7837048 | Msa1047130:CDS |
| ATCTAATAGCCTGTGAAGAA+GGG | 0.568815 | 7_2:+7837039 | None:intergenic |
| TGGGTAACCGGAAGCCCCAC+CGG | 0.570792 | 7_2:+7835772 | None:intergenic |
| GATTGTAGAACAAAACATGT+TGG | 0.571196 | 7_2:-7838687 | Msa1047130:CDS |
| CATTTGGCTTAGGAACATGT+TGG | 0.573777 | 7_2:+7837597 | None:intergenic |
| GATCATGATCATGATCATGT+TGG | 0.574028 | 7_2:+7837504 | None:intergenic |
| TCTGAGCAGCATAAGCAACA+TGG | 0.578431 | 7_2:+7835752 | None:intergenic |
| ACCTTGAGGATGCAAAGATA+AGG | 0.588119 | 7_2:+7838415 | None:intergenic |
| GGAAAAGCATCTGGTGCGGG+TGG | 0.592677 | 7_2:-7835800 | Msa1047130:CDS |
| CACGAACAAGAGCTTGGTCA+TGG | 0.600356 | 7_2:+7838816 | None:intergenic |
| CTAGGGAAAAGCATCTGGTG+CGG | 0.602759 | 7_2:-7835804 | Msa1047130:CDS |
| AAATAAATATTATCCATGGA+AGG | 0.602987 | 7_2:-7837279 | Msa1047130:CDS |
| ATGTGAATGAGGAAAGAAGG+AGG | 0.624805 | 7_2:-7837451 | Msa1047130:CDS |
| CTGAGCAGCATAAGCAACAT+GGG | 0.628394 | 7_2:+7835753 | None:intergenic |
| TTCATCAAAACACCCCACAA+TGG | 0.631056 | 7_2:-7838171 | Msa1047130:CDS |
| CTATTAGATGGAATCCACAA+AGG | 0.677198 | 7_2:-7837025 | Msa1047130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAATTAGAATATTTTGA+TGG | + | chr7_2:7836470-7836489 | None:intergenic | 10.0% |
| !!! | AATAATTTAGCTTTATTTTA+TGG | + | chr7_2:7836764-7836783 | None:intergenic | 10.0% |
| !! | AAATAAATAAATATTATCCA+TGG | - | chr7_2:7837414-7837433 | Msa1047130:CDS | 10.0% |
| !! | TCAATAATATAATATATTCT+AGG | + | chr7_2:7838053-7838072 | None:intergenic | 10.0% |
| !!! | TGATGTTAAATTTTTCAATT+TGG | + | chr7_2:7835766-7835785 | None:intergenic | 15.0% |
| !! | TATATTGTTTATTTATCAAC+AGG | - | chr7_2:7835977-7835996 | Msa1047130:intron | 15.0% |
| !! | TTAGTTACTATTTCAAAAAT+AGG | - | chr7_2:7836224-7836243 | Msa1047130:intron | 15.0% |
| !! | TAGTTACTATTTCAAAAATA+GGG | - | chr7_2:7836225-7836244 | Msa1047130:intron | 15.0% |
| !!! | AGATTTTGACTTTAAAATTT+GGG | - | chr7_2:7836338-7836357 | Msa1047130:intron | 15.0% |
| !!! | TCAATAATATAGTTTCTTTT+TGG | + | chr7_2:7837368-7837387 | None:intergenic | 15.0% |
| !! | TATTGATCTTAAAGAAAAAT+TGG | - | chr7_2:7837382-7837401 | Msa1047130:CDS | 15.0% |
| !!! | AAATATTTTTACAAAACTTG+AGG | - | chr7_2:7838188-7838207 | Msa1047130:CDS | 15.0% |
| !! | TAATAGTCAAATTGTATATT+TGG | - | chr7_2:7838484-7838503 | Msa1047130:intron | 15.0% |
| !!! | AAATAAGTTATATTTGTTAC+CGG | + | chr7_2:7838625-7838644 | None:intergenic | 15.0% |
| !!! | GAGATTTTGACTTTAAAATT+TGG | - | chr7_2:7836337-7836356 | Msa1047130:intron | 20.0% |
| !! | GTATACTCTTGAAATAAATT+AGG | + | chr7_2:7836438-7836457 | None:intergenic | 20.0% |
| !! | AGAACATATTTCACTATATA+TGG | + | chr7_2:7836973-7836992 | None:intergenic | 20.0% |
| !! | TAATATATGTATACTATTGC+AGG | - | chr7_2:7836992-7837011 | Msa1047130:intron | 20.0% |
| !! | AAATAAATATTATCCATGGA+AGG | - | chr7_2:7837418-7837437 | Msa1047130:CDS | 20.0% |
| !! | ACAATTAAGTCAAAATCTAA+AGG | - | chr7_2:7837448-7837467 | Msa1047130:CDS | 20.0% |
| !! | ACCAATTAAACTATAACAAA+TGG | - | chr7_2:7837985-7838004 | Msa1047130:intron | 20.0% |
| !!! | ACCATTTGTTATAGTTTAAT+TGG | + | chr7_2:7837989-7838008 | None:intergenic | 20.0% |
| !! | CATAACATAATAAAACATGT+AGG | - | chr7_2:7838372-7838391 | Msa1047130:CDS | 20.0% |
| !!! | GTCAAATGCAATTTTAATAA+AGG | - | chr7_2:7838535-7838554 | Msa1047130:intron | 20.0% |
| !!! | AAATGCAATTTTAATAAAGG+CGG | - | chr7_2:7838538-7838557 | Msa1047130:intron | 20.0% |
| !! | TGTTATCATAACAGTATTTA+TGG | - | chr7_2:7838579-7838598 | Msa1047130:intron | 20.0% |
| !! | AAACTTTACTAAAGAATCAT+TGG | - | chr7_2:7838739-7838758 | Msa1047130:intron | 20.0% |
| ! | AAATAATGAAGTGAACTCTA+AGG | - | chr7_2:7836396-7836415 | Msa1047130:intron | 25.0% |
| !!! | TCTAAGGTATAGATTTTATG+AGG | - | chr7_2:7836412-7836431 | Msa1047130:intron | 25.0% |
| !! | TTACCTTATTTGTCAATGTA+GGG | + | chr7_2:7836619-7836638 | None:intergenic | 25.0% |
| !! | ATTACCTTATTTGTCAATGT+AGG | + | chr7_2:7836620-7836639 | None:intergenic | 25.0% |
| !!! | TTTCTACTTCATGTTGTTTT+TGG | + | chr7_2:7837034-7837053 | None:intergenic | 25.0% |
| ! | GTTTCTACTTCAATTACATT+TGG | + | chr7_2:7837119-7837138 | None:intergenic | 25.0% |
| !! | TTCAGCACTACTATAATTTT+TGG | + | chr7_2:7837141-7837160 | None:intergenic | 25.0% |
| ! | TCATGATCAAAATGTAATTG+AGG | - | chr7_2:7837208-7837227 | Msa1047130:CDS | 25.0% |
| ! | GATCTTAAAGAAAAATTGGA+AGG | - | chr7_2:7837386-7837405 | Msa1047130:CDS | 25.0% |
| !!! | GAATAGGTATTTTTGAAAAC+CGG | - | chr7_2:7837804-7837823 | Msa1047130:intron | 25.0% |
| !!! | TATTCATTTATTTTGTCACC+TGG | - | chr7_2:7837948-7837967 | Msa1047130:intron | 25.0% |
| ! | TTATGCAATTGAACTTAAGA+TGG | - | chr7_2:7838310-7838329 | Msa1047130:CDS | 25.0% |
| ! | CATAATAAAACATGTAGGTT+TGG | - | chr7_2:7838377-7838396 | Msa1047130:CDS | 25.0% |
| ! | TTAGATAACATTCTACATGA+AGG | + | chr7_2:7838467-7838486 | None:intergenic | 25.0% |
| ! | AAAAAACTTACCATCTTTAG+TGG | - | chr7_2:7838662-7838681 | Msa1047130:CDS | 25.0% |
| ! | GAATCATTGGAAAATAATGT+TGG | - | chr7_2:7838752-7838771 | Msa1047130:intron | 25.0% |
| ! | TTGGCTAGTAAAATAATCAT+TGG | - | chr7_2:7838771-7838790 | Msa1047130:intron | 25.0% |
| TAACATCACTTGCAATTTCT+AGG | - | chr7_2:7835778-7835797 | Msa1047130:CDS | 30.0% | |
| GATTGTAGAACAAAACATGT+TGG | - | chr7_2:7836010-7836029 | Msa1047130:intron | 30.0% | |
| !!! | TTCCTTTTGATTTCCATTGT+GGG | + | chr7_2:7836542-7836561 | None:intergenic | 30.0% |
| !!! | ATTCCTTTTGATTTCCATTG+TGG | + | chr7_2:7836543-7836562 | None:intergenic | 30.0% |
| AAGAAAATTGCTGCTGATAT+TGG | - | chr7_2:7836569-7836588 | Msa1047130:intron | 30.0% | |
| TTGTTCAAAGATGATCATAG+TGG | + | chr7_2:7836674-7836693 | None:intergenic | 30.0% | |
| GTTGTTTACATAAGCTATCA+TGG | - | chr7_2:7836802-7836821 | Msa1047130:intron | 30.0% | |
| CATGAAGTAGAAACCAAAAA+TGG | - | chr7_2:7837041-7837060 | Msa1047130:CDS | 30.0% | |
| ! | ATCAACACTACTACCATTTT+TGG | + | chr7_2:7837057-7837076 | None:intergenic | 30.0% |
| ! | ACTTCAATTACATTTGGCTT+AGG | + | chr7_2:7837113-7837132 | None:intergenic | 30.0% |
| GAATCTATTTGATGTGAATG+AGG | - | chr7_2:7837235-7837254 | Msa1047130:CDS | 30.0% | |
| ATACTCCAATCATAAGCAAA+AGG | - | chr7_2:7837331-7837350 | Msa1047130:CDS | 30.0% | |
| ! | TACATCCTTTTGCTTATGAT+TGG | + | chr7_2:7837339-7837358 | None:intergenic | 30.0% |
| TGCAACAAATATAGTTTCCA+AGG | - | chr7_2:7837493-7837512 | Msa1047130:CDS | 30.0% | |
| GCAACATGCTTGATAAATTA+AGG | - | chr7_2:7837546-7837565 | Msa1047130:CDS | 30.0% | |
| GGAAAATATGTTCTACTTGT+AGG | + | chr7_2:7837710-7837729 | None:intergenic | 30.0% | |
| ! | TGATGTGTATGCATTTTCTT+TGG | + | chr7_2:7837731-7837750 | None:intergenic | 30.0% |
| !! | AGAACTTGTTGAACTAATAG+CGG | + | chr7_2:7837905-7837924 | None:intergenic | 30.0% |
| ACTATAACAAATGGTCTCAT+TGG | - | chr7_2:7837994-7838013 | Msa1047130:intron | 30.0% | |
| ! | CATTGTTGATGAATAATCTC+CGG | - | chr7_2:7838603-7838622 | Msa1047130:intron | 30.0% |
| GTTTCTCAACTCTTGAAACT+TGG | - | chr7_2:7835855-7835874 | Msa1047130:intron | 35.0% | |
| ! | TTTATCAACAGGTTGAGCAT+TGG | - | chr7_2:7835988-7836007 | Msa1047130:intron | 35.0% |
| ! | GTACTTGAGCTCTTTCTTTT+AGG | + | chr7_2:7836070-7836089 | None:intergenic | 35.0% |
| !!! | TCCTTTTGATTTCCATTGTG+GGG | + | chr7_2:7836541-7836560 | None:intergenic | 35.0% |
| !! | AGTTACTTTGCCTTTTGAGA+AGG | - | chr7_2:7836592-7836611 | Msa1047130:intron | 35.0% |
| TGAGCTTAATAAGTCACATG+AGG | + | chr7_2:7836901-7836920 | None:intergenic | 35.0% | |
| GATCATGATCATGATCATGT+TGG | + | chr7_2:7837196-7837215 | None:intergenic | 35.0% | |
| TTGATGTGAATGAGGAAAGA+AGG | - | chr7_2:7837243-7837262 | Msa1047130:CDS | 35.0% | |
| AGTTTCCAAGGAAAAAGTGA+AGG | - | chr7_2:7837505-7837524 | Msa1047130:CDS | 35.0% | |
| !!! | ATTCTCCTTCACTTTTTCCT+TGG | + | chr7_2:7837513-7837532 | None:intergenic | 35.0% |
| ATCTAATAGCCTGTGAAGAA+GGG | + | chr7_2:7837661-7837680 | None:intergenic | 35.0% | |
| CTATTAGATGGAATCCACAA+AGG | - | chr7_2:7837672-7837691 | Msa1047130:CDS | 35.0% | |
| GCATACACATCATCAACATT+TGG | - | chr7_2:7837739-7837758 | Msa1047130:intron | 35.0% | |
| CACATCATCAACATTTGGAT+TGG | - | chr7_2:7837744-7837763 | Msa1047130:intron | 35.0% | |
| TATTCATTAGTGTGCTCATC+GGG | + | chr7_2:7837789-7837808 | None:intergenic | 35.0% | |
| CTATTCATTAGTGTGCTCAT+CGG | + | chr7_2:7837790-7837809 | None:intergenic | 35.0% | |
| !! | TTACGATTTCTAGTTCGATC+CGG | + | chr7_2:7837826-7837845 | None:intergenic | 35.0% |
| AAATCGTAAGGTTCGTCAAT+TGG | - | chr7_2:7837837-7837856 | Msa1047130:intron | 35.0% | |
| GTACCTTAGTTTAGTTGAAC+TGG | - | chr7_2:7837874-7837893 | Msa1047130:intron | 35.0% | |
| CAACCAGTTCAACTAAACTA+AGG | + | chr7_2:7837880-7837899 | None:intergenic | 35.0% | |
| CAATTCGACATGAATGGTTA+AGG | + | chr7_2:7838121-7838140 | None:intergenic | 35.0% | |
| TAAGCTCAATTCGACATGAA+TGG | + | chr7_2:7838127-7838146 | None:intergenic | 35.0% | |
| ! | TTGTTCACTATGCTTGCTAA+TGG | - | chr7_2:7838278-7838297 | Msa1047130:intron | 35.0% |
| ! | TCAAAAAGAGCACACATGCA+TGG | - | chr7_2:7836171-7836190 | Msa1047130:intron | 40.0% |
| ACCTTGAGGATGCAAAGATA+AGG | + | chr7_2:7836285-7836304 | None:intergenic | 40.0% | |
| TCTTGTATCTTGTGCAACTC+TGG | + | chr7_2:7836319-7836338 | None:intergenic | 40.0% | |
| TTCATCAAAACACCCCACAA+TGG | - | chr7_2:7836526-7836545 | Msa1047130:intron | 40.0% | |
| ACCCCACAATGGAAATCAAA+AGG | - | chr7_2:7836537-7836556 | Msa1047130:intron | 40.0% | |
| AATGTAGGGTCCTTCTCAAA+AGG | + | chr7_2:7836605-7836624 | None:intergenic | 40.0% | |
| GGACCCTACATTGACAAATA+AGG | - | chr7_2:7836613-7836632 | Msa1047130:intron | 40.0% | |
| AGTCACATGAGGCTATTTGT+GGG | + | chr7_2:7836890-7836909 | None:intergenic | 40.0% | |
| AAGTCACATGAGGCTATTTG+TGG | + | chr7_2:7836891-7836910 | None:intergenic | 40.0% | |
| ! | CATTTGGCTTAGGAACATGT+TGG | + | chr7_2:7837103-7837122 | None:intergenic | 40.0% |
| ATGTGAATGAGGAAAGAAGG+AGG | - | chr7_2:7837246-7837265 | Msa1047130:CDS | 40.0% | |
| AATTGTGACTCTTCCTTCCA+TGG | + | chr7_2:7837434-7837453 | None:intergenic | 40.0% | |
| AAGAACATACCCTTCTTCAC+AGG | - | chr7_2:7837649-7837668 | Msa1047130:CDS | 40.0% | |
| CATCTAATAGCCTGTGAAGA+AGG | + | chr7_2:7837662-7837681 | None:intergenic | 40.0% | |
| CTTCTTCACAGGCTATTAGA+TGG | - | chr7_2:7837660-7837679 | Msa1047130:CDS | 40.0% | |
| ! | GGATTTGTTTGAGACCTTTG+TGG | + | chr7_2:7837689-7837708 | None:intergenic | 40.0% |
| ATTGGAAGATGATGTCAGTC+AGG | - | chr7_2:7837762-7837781 | Msa1047130:intron | 40.0% | |
| CGATGAGCACACTAATGAAT+AGG | - | chr7_2:7837788-7837807 | Msa1047130:intron | 40.0% | |
| GGATCGAACTAGAAATCGTA+AGG | - | chr7_2:7837825-7837844 | Msa1047130:intron | 40.0% | |
| TGCAATTGACGTTTGAATCG+AGG | - | chr7_2:7838089-7838108 | Msa1047130:CDS | 40.0% | |
| GCAATTGACGTTTGAATCGA+GGG | - | chr7_2:7838090-7838109 | Msa1047130:CDS | 40.0% | |
| TGCTTACACGAACAAGAGCT+TGG | + | chr7_2:7835890-7835909 | None:intergenic | 45.0% | |
| GTTGCTTCCTTGAGCTCAAA+GGG | + | chr7_2:7836256-7836275 | None:intergenic | 45.0% | |
| ! | TGTTGCTTCCTTGAGCTCAA+AGG | + | chr7_2:7836257-7836276 | None:intergenic | 45.0% |
| GCCTTATCTTTGCATCCTCA+AGG | - | chr7_2:7836281-7836300 | Msa1047130:intron | 45.0% | |
| ATCTTTGCATCCTCAAGGTG+TGG | - | chr7_2:7836286-7836305 | Msa1047130:intron | 45.0% | |
| TGGAAATTCTCCACACCTTG+AGG | + | chr7_2:7836299-7836318 | None:intergenic | 45.0% | |
| TGCTGCTGTTCTACAAGCTT+TGG | - | chr7_2:7837283-7837302 | Msa1047130:CDS | 45.0% | |
| GAGAGAGACTCCACTAAAGA+TGG | + | chr7_2:7838675-7838694 | None:intergenic | 45.0% | |
| CTGTAGAAGTGACATTCAGC+CGG | - | chr7_2:7838867-7838886 | Msa1047130:CDS | 45.0% | |
| TGTAGAAGTGACATTCAGCC+GGG | - | chr7_2:7838868-7838887 | Msa1047130:CDS | 45.0% | |
| GCATAAGCAACATGGGTAAC+CGG | + | chr7_2:7838940-7838959 | None:intergenic | 45.0% | |
| CTGAGCAGCATAAGCAACAT+GGG | + | chr7_2:7838947-7838966 | None:intergenic | 45.0% | |
| TCTGAGCAGCATAAGCAACA+TGG | + | chr7_2:7838948-7838967 | None:intergenic | 45.0% | |
| ! | TTATGCTGCTCAGAGTGCTA+AGG | - | chr7_2:7838954-7838973 | Msa1047130:CDS | 45.0% |
| !! | TGTAAAATAAAAATAAAAAT+TGG | + | chr7_2:7835913-7835932 | None:intergenic | 5.0% |
| CACGAACAAGAGCTTGGTCA+TGG | + | chr7_2:7835884-7835903 | None:intergenic | 50.0% | |
| GTCACCTGGTTCAACAACGT+TGG | - | chr7_2:7837962-7837981 | Msa1047130:intron | 50.0% | |
| TGGTCCAACGTTGTTGAACC+AGG | + | chr7_2:7837969-7837988 | None:intergenic | 50.0% | |
| ! | GCACCAGATGCTTTTCCCTA+GGG | + | chr7_2:7838894-7838913 | None:intergenic | 50.0% |
| !! | CTAGGGAAAAGCATCTGGTG+CGG | - | chr7_2:7838893-7838912 | Msa1047130:CDS | 50.0% |
| !! | TAGGGAAAAGCATCTGGTGC+GGG | - | chr7_2:7838894-7838913 | Msa1047130:CDS | 50.0% |
| ! | GGAGTGTCCCTTTGAGCTCA+AGG | - | chr7_2:7836246-7836265 | Msa1047130:intron | 55.0% |
| ! | AGATGCTTTTCCCTAGGGCC+CGG | + | chr7_2:7838889-7838908 | None:intergenic | 55.0% |
| ! | CGCACCAGATGCTTTTCCCT+AGG | + | chr7_2:7838895-7838914 | None:intergenic | 55.0% |
| TGACATTCAGCCGGGCCCTA+GGG | - | chr7_2:7838876-7838895 | Msa1047130:CDS | 60.0% | |
| !! | GGGCCCTAGGGAAAAGCATC+TGG | - | chr7_2:7838888-7838907 | Msa1047130:CDS | 60.0% |
| !! | GGAAAAGCATCTGGTGCGGG+TGG | - | chr7_2:7838897-7838916 | Msa1047130:CDS | 60.0% |
| GTGACATTCAGCCGGGCCCT+AGG | - | chr7_2:7838875-7838894 | Msa1047130:CDS | 65.0% | |
| ! | TCTGGTGCGGGTGGACTTGC+CGG | - | chr7_2:7838906-7838925 | Msa1047130:CDS | 65.0% |
| TGGGTAACCGGAAGCCCCAC+CGG | + | chr7_2:7838928-7838947 | None:intergenic | 65.0% | |
| ! | GTGCGGGTGGACTTGCCGGT+GGG | - | chr7_2:7838910-7838929 | Msa1047130:CDS | 70.0% |
| ! | TGCGGGTGGACTTGCCGGTG+GGG | - | chr7_2:7838911-7838930 | Msa1047130:CDS | 70.0% |
| GGACTTGCCGGTGGGGCTTC+CGG | - | chr7_2:7838918-7838937 | Msa1047130:CDS | 70.0% | |
| ! | GGTGCGGGTGGACTTGCCGG+TGG | - | chr7_2:7838909-7838928 | Msa1047130:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 7835735 | 7838984 | 7835735 | ID=Msa1047130;Name=Msa1047130 |
| chr7_2 | mRNA | 7835735 | 7838984 | 7835735 | ID=Msa1047130-mRNA-1;Parent=Msa1047130;Name=Msa1047130-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.83|1|1|6|0|452 |
| chr7_2 | exon | 7838817 | 7838984 | 7838817 | ID=Msa1047130-mRNA-1:exon:2054;Parent=Msa1047130-mRNA-1 |
| chr7_2 | exon | 7838617 | 7838720 | 7838617 | ID=Msa1047130-mRNA-1:exon:2053;Parent=Msa1047130-mRNA-1 |
| chr7_2 | exon | 7838302 | 7838473 | 7838302 | ID=Msa1047130-mRNA-1:exon:2052;Parent=Msa1047130-mRNA-1 |
| chr7_2 | exon | 7838085 | 7838207 | 7838085 | ID=Msa1047130-mRNA-1:exon:2051;Parent=Msa1047130-mRNA-1 |
| chr7_2 | exon | 7837026 | 7837705 | 7837026 | ID=Msa1047130-mRNA-1:exon:2050;Parent=Msa1047130-mRNA-1 |
| chr7_2 | exon | 7835735 | 7835846 | 7835735 | ID=Msa1047130-mRNA-1:exon:2049;Parent=Msa1047130-mRNA-1 |
| chr7_2 | CDS | 7838817 | 7838984 | 7838817 | ID=Msa1047130-mRNA-1:cds;Parent=Msa1047130-mRNA-1 |
| chr7_2 | CDS | 7838617 | 7838720 | 7838617 | ID=Msa1047130-mRNA-1:cds;Parent=Msa1047130-mRNA-1 |
| chr7_2 | CDS | 7838302 | 7838473 | 7838302 | ID=Msa1047130-mRNA-1:cds;Parent=Msa1047130-mRNA-1 |
| chr7_2 | CDS | 7838085 | 7838207 | 7838085 | ID=Msa1047130-mRNA-1:cds;Parent=Msa1047130-mRNA-1 |
| chr7_2 | CDS | 7837026 | 7837705 | 7837026 | ID=Msa1047130-mRNA-1:cds;Parent=Msa1047130-mRNA-1 |
| chr7_2 | CDS | 7835735 | 7835846 | 7835735 | ID=Msa1047130-mRNA-1:cds;Parent=Msa1047130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
