AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1092650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 58 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTATAATTTGAATATTTAT+TGG 0.149686 7_3:+9846083 None:intergenic
AAATATAGATTTGGATTTAA+TGG 0.180402 7_3:-9845932 Msa1092650:CDS
AATGCAAAGGGTAGAGTATA+TGG 0.262241 7_3:-9846153 Msa1092650:CDS
GAGAGGTTGAGGCGCGTTTA+AGG 0.273052 7_3:-9846038 Msa1092650:CDS
GTGAACAGGAGGCAACTATT+AGG 0.318451 7_3:-9847223 Msa1092650:five_prime_UTR
TTAGTTGATTCTTAGATCCT+TGG 0.322858 7_3:+9847000 None:intergenic
TTTCTGAAATTATTGAAAAT+GGG 0.364065 7_3:+9847262 None:intergenic
CACAGCTTCAGTAATCCATT+TGG 0.367414 7_3:+9847124 None:intergenic
TAAACATGCAAATATAGATT+TGG 0.367686 7_3:-9845941 Msa1092650:CDS
CTACAAATGGATTGGTGAAC+AGG 0.367995 7_3:-9847237 Msa1092650:five_prime_UTR
ACAAACAATCAATTCCATTA+AGG 0.368818 7_3:-9845995 Msa1092650:CDS
TAGTTGATTCTTAGATCCTT+GGG 0.378840 7_3:+9847001 None:intergenic
AACTAAAGCATGAACTTGAA+TGG 0.410641 7_3:-9846983 Msa1092650:exon
TAGAGTATATGGGCTTGGTT+TGG 0.416967 7_3:-9846142 Msa1092650:CDS
ACAGCTTCAGTAATCCATTT+GGG 0.422196 7_3:+9847125 None:intergenic
TGAACAGGAGGCAACTATTA+GGG 0.425593 7_3:-9847222 Msa1092650:five_prime_UTR
GGATCTACTAAGAAAGATAA+TGG 0.435711 7_3:-9847177 Msa1092650:five_prime_UTR
ATTAGTGTATCATAATCAAT+AGG 0.448901 7_3:+9846198 None:intergenic
GGATTTAGACGTTGAGCCAC+GGG 0.479351 7_3:+9846104 None:intergenic
ACTAAAGCATGAACTTGAAT+GGG 0.485954 7_3:-9846982 Msa1092650:intron
CAACCTCATCCTTCTGAGGC+TGG 0.488334 7_3:-9846249 Msa1092650:CDS
AAGGGTAGAGTATATGGGCT+TGG 0.493623 7_3:-9846147 Msa1092650:CDS
GGCACAATTGCTTGCAATGT+GGG 0.504123 7_3:-9847099 Msa1092650:five_prime_UTR
TGTATCATAATCAATAGGCT+TGG 0.504722 7_3:+9846203 None:intergenic
GTATCATAATCAATAGGCTT+GGG 0.509867 7_3:+9846204 None:intergenic
TGGTATGAGTGGAGAGGTTG+AGG 0.514731 7_3:-9846049 Msa1092650:CDS
GTATATGGGCTTGGTTTGGA+TGG 0.514998 7_3:-9846138 Msa1092650:CDS
ATGCAAAGGGTAGAGTATAT+GGG 0.526831 7_3:-9846152 Msa1092650:CDS
ACACTAATGATTGAAGCTGT+TGG 0.537396 7_3:-9846183 Msa1092650:CDS
AGTAATTGTGATTCAGATGT+CGG 0.549162 7_3:-9847038 Msa1092650:five_prime_UTR
GATGGCAGCATGCGCACCCG+TGG 0.550034 7_3:-9846120 Msa1092650:CDS
CTAATGATTGAAGCTGTTGG+AGG 0.555236 7_3:-9846180 Msa1092650:CDS
TGCAAATGTTGGTGCTGATG+TGG 0.559498 7_3:-9845860 Msa1092650:CDS
TGGATTTAGACGTTGAGCCA+CGG 0.559998 7_3:+9846103 None:intergenic
ATTTGCATGTTTAGCGAATG+CGG 0.561458 7_3:+9845951 None:intergenic
AGGCAACTATTAGGGCCACA+TGG 0.561815 7_3:-9847214 Msa1092650:five_prime_UTR
GGATTTAATGGATTTAGATG+AGG 0.564700 7_3:-9845920 Msa1092650:CDS
CACATGGGAATCAAAAGCTA+AGG 0.571102 7_3:-9847198 Msa1092650:five_prime_UTR
GTCTCAACCTCATCCTTCTG+AGG 0.578340 7_3:-9846253 Msa1092650:CDS
TCATCATTACCAGCCTCAGA+AGG 0.597433 7_3:+9846240 None:intergenic
GGAGGTTAATTGCACACCCA+AGG 0.600168 7_3:-9847017 Msa1092650:five_prime_UTR
GGCAACTATTAGGGCCACAT+GGG 0.615938 7_3:-9847213 Msa1092650:five_prime_UTR
CGTGGAAGCAATGCAAATGT+TGG 0.616233 7_3:-9845871 Msa1092650:CDS
TTACCAGCCTCAGAAGGATG+AGG 0.625201 7_3:+9846246 None:intergenic
TGTTGGAGGAAGAAATGCAA+AGG 0.632509 7_3:-9846166 Msa1092650:CDS
GATATTGCACGTGGTATGAG+TGG 0.632896 7_3:-9846060 Msa1092650:CDS
ATGGATTACTGAAGCTGTGT+GGG 0.633622 7_3:-9847120 Msa1092650:five_prime_UTR
TCTGTTGATAATGCTACTCG+TGG 0.635589 7_3:-9845889 Msa1092650:CDS
GTTGGAGGAAGAAATGCAAA+GGG 0.639504 7_3:-9846165 Msa1092650:CDS
CAAATGGATTGGTGAACAGG+AGG 0.645056 7_3:-9847234 Msa1092650:five_prime_UTR
GGGCACAATTGCTTGCAATG+TGG 0.647113 7_3:-9847100 Msa1092650:five_prime_UTR
AATTGTGATTCAGATGTCGG+AGG 0.663046 7_3:-9847035 Msa1092650:five_prime_UTR
TTACATTACAAATAGATGTG+TGG 0.670020 7_3:-9847066 Msa1092650:five_prime_UTR
AATTATACTGATATTGCACG+TGG 0.677934 7_3:-9846069 Msa1092650:CDS
GCACAATTGCTTGCAATGTG+GGG 0.698795 7_3:-9847098 Msa1092650:five_prime_UTR
AATGGATTACTGAAGCTGTG+TGG 0.699938 7_3:-9847121 Msa1092650:five_prime_UTR
TGCACGTGGTATGAGTGGAG+AGG 0.729243 7_3:-9846055 Msa1092650:CDS
GAGGCTGGTAATGATGAGAG+TGG 0.748008 7_3:-9846234 Msa1092650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATAATTTGAATATTTAT+TGG + chr7_3:9847051-9847070 None:intergenic 10.0%
!! AGTATAATTTGAATATTTAT+TGG + chr7_3:9847051-9847070 None:intergenic 10.0%
!!! TTTCTGAAATTATTGAAAAT+GGG + chr7_3:9845872-9845891 None:intergenic 15.0%
!!! TTTTCTGAAATTATTGAAAA+TGG + chr7_3:9845873-9845892 None:intergenic 15.0%
!! AAATATAGATTTGGATTTAA+TGG - chr7_3:9847199-9847218 Msa1092650:five_prime_UTR 15.0%
!!! TTTCTGAAATTATTGAAAAT+GGG + chr7_3:9845872-9845891 None:intergenic 15.0%
!!! TTTTCTGAAATTATTGAAAA+TGG + chr7_3:9845873-9845892 None:intergenic 15.0%
!! AAATATAGATTTGGATTTAA+TGG - chr7_3:9847199-9847218 Msa1092650:five_prime_UTR 15.0%
!! AATTTCAGAAAAACTACAAA+TGG - chr7_3:9845881-9845900 Msa1092650:CDS 20.0%
!!! TTTGCTTCTTTAATTTTACT+TGG - chr7_3:9846375-9846394 Msa1092650:intron 20.0%
!! TTGTTTGACAGATATATTAT+CGG - chr7_3:9846531-9846550 Msa1092650:intron 20.0%
!! CAAAAACTAAAGTAGATAAA+AGG + chr7_3:9846566-9846585 None:intergenic 20.0%
!!! CTTTTATCTACTTTAGTTTT+TGG - chr7_3:9846564-9846583 Msa1092650:intron 20.0%
!! ATTAGTGTATCATAATCAAT+AGG + chr7_3:9846936-9846955 None:intergenic 20.0%
!! TAAACATGCAAATATAGATT+TGG - chr7_3:9847190-9847209 Msa1092650:five_prime_UTR 20.0%
!! AATTTCAGAAAAACTACAAA+TGG - chr7_3:9845881-9845900 Msa1092650:CDS 20.0%
!!! TTTGCTTCTTTAATTTTACT+TGG - chr7_3:9846375-9846394 Msa1092650:intron 20.0%
!! TTGTTTGACAGATATATTAT+CGG - chr7_3:9846531-9846550 Msa1092650:intron 20.0%
!! CAAAAACTAAAGTAGATAAA+AGG + chr7_3:9846566-9846585 None:intergenic 20.0%
!!! CTTTTATCTACTTTAGTTTT+TGG - chr7_3:9846564-9846583 Msa1092650:intron 20.0%
!! ATTAGTGTATCATAATCAAT+AGG + chr7_3:9846936-9846955 None:intergenic 20.0%
!! TAAACATGCAAATATAGATT+TGG - chr7_3:9847190-9847209 Msa1092650:five_prime_UTR 20.0%
! TTACATTACAAATAGATGTG+TGG - chr7_3:9846065-9846084 Msa1092650:CDS 25.0%
!! AGACTTGTAGTTTATCTTTT+GGG - chr7_3:9846422-9846441 Msa1092650:intron 25.0%
! TATGAATCTAGTAATGTATG+AGG - chr7_3:9846645-9846664 Msa1092650:intron 25.0%
!!! GTAATTGAATGACTTGTTAT+AGG - chr7_3:9846687-9846706 Msa1092650:intron 25.0%
! CATGTATTGCCTTTATAATT+TGG - chr7_3:9846713-9846732 Msa1092650:intron 25.0%
!!! CCTTTATAATTTGGTTTGTT+GGG - chr7_3:9846722-9846741 Msa1092650:intron 25.0%
! ACAAACAATCAATTCCATTA+AGG - chr7_3:9847136-9847155 Msa1092650:five_prime_UTR 25.0%
! TTACATTACAAATAGATGTG+TGG - chr7_3:9846065-9846084 Msa1092650:CDS 25.0%
!! AGACTTGTAGTTTATCTTTT+GGG - chr7_3:9846422-9846441 Msa1092650:intron 25.0%
! TATGAATCTAGTAATGTATG+AGG - chr7_3:9846645-9846664 Msa1092650:intron 25.0%
!!! GTAATTGAATGACTTGTTAT+AGG - chr7_3:9846687-9846706 Msa1092650:intron 25.0%
! CATGTATTGCCTTTATAATT+TGG - chr7_3:9846713-9846732 Msa1092650:intron 25.0%
!!! CCTTTATAATTTGGTTTGTT+GGG - chr7_3:9846722-9846741 Msa1092650:intron 25.0%
! ACAAACAATCAATTCCATTA+AGG - chr7_3:9847136-9847155 Msa1092650:five_prime_UTR 25.0%
CAGAAAAACTACAAATGGAT+TGG - chr7_3:9845886-9845905 Msa1092650:CDS 30.0%
GGATCTACTAAGAAAGATAA+TGG - chr7_3:9845954-9845973 Msa1092650:CDS 30.0%
AGTAATTGTGATTCAGATGT+CGG - chr7_3:9846093-9846112 Msa1092650:CDS 30.0%
! TAGTTGATTCTTAGATCCTT+GGG + chr7_3:9846133-9846152 None:intergenic 30.0%
! TTAGTTGATTCTTAGATCCT+TGG + chr7_3:9846134-9846153 None:intergenic 30.0%
AACTAAAGCATGAACTTGAA+TGG - chr7_3:9846148-9846167 Msa1092650:CDS 30.0%
ACTAAAGCATGAACTTGAAT+GGG - chr7_3:9846149-9846168 Msa1092650:CDS 30.0%
TGTTCAAAAAATGTCACACT+AGG - chr7_3:9846292-9846311 Msa1092650:CDS 30.0%
AAAAAATGTCACACTAGGAA+TGG - chr7_3:9846297-9846316 Msa1092650:CDS 30.0%
AAAAATGTCACACTAGGAAT+GGG - chr7_3:9846298-9846317 Msa1092650:CDS 30.0%
AGTTGATCTCTTATCAACAA+AGG + chr7_3:9846331-9846350 None:intergenic 30.0%
! GAGACTTGTAGTTTATCTTT+TGG - chr7_3:9846421-9846440 Msa1092650:intron 30.0%
!! TTTATCTTTTGGGTCTGTTT+TGG - chr7_3:9846432-9846451 Msa1092650:intron 30.0%
!!! TTTTGGCTTGCATTTATGTT+TGG - chr7_3:9846581-9846600 Msa1092650:intron 30.0%
!!! CTTTTTTGTTATTGCAGTAC+TGG - chr7_3:9846606-9846625 Msa1092650:intron 30.0%
!! GCCTTTATAATTTGGTTTGT+TGG - chr7_3:9846721-9846740 Msa1092650:intron 30.0%
CCCAACAAACCAAATTATAA+AGG + chr7_3:9846725-9846744 None:intergenic 30.0%
TTAAGAAGGCAAATTAAGGA+GGG + chr7_3:9846776-9846795 None:intergenic 30.0%
TTTAAGAAGGCAAATTAAGG+AGG + chr7_3:9846777-9846796 None:intergenic 30.0%
CAGTTTAAGAAGGCAAATTA+AGG + chr7_3:9846780-9846799 None:intergenic 30.0%
GTATCATAATCAATAGGCTT+GGG + chr7_3:9846930-9846949 None:intergenic 30.0%
TGTATCATAATCAATAGGCT+TGG + chr7_3:9846931-9846950 None:intergenic 30.0%
AATTATACTGATATTGCACG+TGG - chr7_3:9847062-9847081 Msa1092650:five_prime_UTR 30.0%
!! GGATTTAATGGATTTAGATG+AGG - chr7_3:9847211-9847230 Msa1092650:five_prime_UTR 30.0%
CAGAAAAACTACAAATGGAT+TGG - chr7_3:9845886-9845905 Msa1092650:CDS 30.0%
GGATCTACTAAGAAAGATAA+TGG - chr7_3:9845954-9845973 Msa1092650:CDS 30.0%
AGTAATTGTGATTCAGATGT+CGG - chr7_3:9846093-9846112 Msa1092650:CDS 30.0%
! TAGTTGATTCTTAGATCCTT+GGG + chr7_3:9846133-9846152 None:intergenic 30.0%
! TTAGTTGATTCTTAGATCCT+TGG + chr7_3:9846134-9846153 None:intergenic 30.0%
AACTAAAGCATGAACTTGAA+TGG - chr7_3:9846148-9846167 Msa1092650:CDS 30.0%
ACTAAAGCATGAACTTGAAT+GGG - chr7_3:9846149-9846168 Msa1092650:CDS 30.0%
TGTTCAAAAAATGTCACACT+AGG - chr7_3:9846292-9846311 Msa1092650:CDS 30.0%
AAAAAATGTCACACTAGGAA+TGG - chr7_3:9846297-9846316 Msa1092650:CDS 30.0%
AAAAATGTCACACTAGGAAT+GGG - chr7_3:9846298-9846317 Msa1092650:CDS 30.0%
AGTTGATCTCTTATCAACAA+AGG + chr7_3:9846331-9846350 None:intergenic 30.0%
! GAGACTTGTAGTTTATCTTT+TGG - chr7_3:9846421-9846440 Msa1092650:intron 30.0%
!! TTTATCTTTTGGGTCTGTTT+TGG - chr7_3:9846432-9846451 Msa1092650:intron 30.0%
!!! TTTTGGCTTGCATTTATGTT+TGG - chr7_3:9846581-9846600 Msa1092650:intron 30.0%
!!! CTTTTTTGTTATTGCAGTAC+TGG - chr7_3:9846606-9846625 Msa1092650:intron 30.0%
!! GCCTTTATAATTTGGTTTGT+TGG - chr7_3:9846721-9846740 Msa1092650:intron 30.0%
CCCAACAAACCAAATTATAA+AGG + chr7_3:9846725-9846744 None:intergenic 30.0%
TTAAGAAGGCAAATTAAGGA+GGG + chr7_3:9846776-9846795 None:intergenic 30.0%
TTTAAGAAGGCAAATTAAGG+AGG + chr7_3:9846777-9846796 None:intergenic 30.0%
CAGTTTAAGAAGGCAAATTA+AGG + chr7_3:9846780-9846799 None:intergenic 30.0%
GTATCATAATCAATAGGCTT+GGG + chr7_3:9846930-9846949 None:intergenic 30.0%
TGTATCATAATCAATAGGCT+TGG + chr7_3:9846931-9846950 None:intergenic 30.0%
AATTATACTGATATTGCACG+TGG - chr7_3:9847062-9847081 Msa1092650:five_prime_UTR 30.0%
!! GGATTTAATGGATTTAGATG+AGG - chr7_3:9847211-9847230 Msa1092650:five_prime_UTR 30.0%
ACAGCTTCAGTAATCCATTT+GGG + chr7_3:9846009-9846028 None:intergenic 35.0%
CTAAACAAGTGCAGAACAAA+AGG - chr7_3:9846241-9846260 Msa1092650:CDS 35.0%
TTAGGAAGAATTCCACACAA+GGG - chr7_3:9846264-9846283 Msa1092650:CDS 35.0%
TGATGCTCAAATCAGAATCA+CGG + chr7_3:9846502-9846521 None:intergenic 35.0%
AGATATATTATCGGCAACTG+TGG - chr7_3:9846540-9846559 Msa1092650:intron 35.0%
!!! TTTTGTTATTGCAGTACTGG+TGG - chr7_3:9846609-9846628 Msa1092650:intron 35.0%
TTTGTTGGGATGTTCTGTTT+AGG - chr7_3:9846736-9846755 Msa1092650:intron 35.0%
ACAAGCAACACAGTTTAAGA+AGG + chr7_3:9846790-9846809 None:intergenic 35.0%
ACACTAATGATTGAAGCTGT+TGG - chr7_3:9846948-9846967 Msa1092650:intron 35.0%
AATGCAAAGGGTAGAGTATA+TGG - chr7_3:9846978-9846997 Msa1092650:intron 35.0%
ATGCAAAGGGTAGAGTATAT+GGG - chr7_3:9846979-9846998 Msa1092650:intron 35.0%
ATTTGCATGTTTAGCGAATG+CGG + chr7_3:9847183-9847202 None:intergenic 35.0%
ACAGCTTCAGTAATCCATTT+GGG + chr7_3:9846009-9846028 None:intergenic 35.0%
CTAAACAAGTGCAGAACAAA+AGG - chr7_3:9846241-9846260 Msa1092650:CDS 35.0%
TTAGGAAGAATTCCACACAA+GGG - chr7_3:9846264-9846283 Msa1092650:CDS 35.0%
TGATGCTCAAATCAGAATCA+CGG + chr7_3:9846502-9846521 None:intergenic 35.0%
AGATATATTATCGGCAACTG+TGG - chr7_3:9846540-9846559 Msa1092650:intron 35.0%
!!! TTTTGTTATTGCAGTACTGG+TGG - chr7_3:9846609-9846628 Msa1092650:intron 35.0%
TTTGTTGGGATGTTCTGTTT+AGG - chr7_3:9846736-9846755 Msa1092650:intron 35.0%
ACAAGCAACACAGTTTAAGA+AGG + chr7_3:9846790-9846809 None:intergenic 35.0%
ACACTAATGATTGAAGCTGT+TGG - chr7_3:9846948-9846967 Msa1092650:intron 35.0%
AATGCAAAGGGTAGAGTATA+TGG - chr7_3:9846978-9846997 Msa1092650:intron 35.0%
ATGCAAAGGGTAGAGTATAT+GGG - chr7_3:9846979-9846998 Msa1092650:intron 35.0%
ATTTGCATGTTTAGCGAATG+CGG + chr7_3:9847183-9847202 None:intergenic 35.0%
!! CTACAAATGGATTGGTGAAC+AGG - chr7_3:9845894-9845913 Msa1092650:CDS 40.0%
TGAACAGGAGGCAACTATTA+GGG - chr7_3:9845909-9845928 Msa1092650:CDS 40.0%
!! CTTAGCTTTTGATTCCCATG+TGG + chr7_3:9845935-9845954 None:intergenic 40.0%
CACATGGGAATCAAAAGCTA+AGG - chr7_3:9845933-9845952 Msa1092650:CDS 40.0%
CAGTGTCAGAAAAACCCAAA+TGG - chr7_3:9845992-9846011 Msa1092650:CDS 40.0%
CACAGCTTCAGTAATCCATT+TGG + chr7_3:9846010-9846029 None:intergenic 40.0%
!! AATGGATTACTGAAGCTGTG+TGG - chr7_3:9846010-9846029 Msa1092650:CDS 40.0%
! ATGGATTACTGAAGCTGTGT+GGG - chr7_3:9846011-9846030 Msa1092650:CDS 40.0%
AATTGTGATTCAGATGTCGG+AGG - chr7_3:9846096-9846115 Msa1092650:CDS 40.0%
CAAGTGCAGAACAAAAGGTT+AGG - chr7_3:9846246-9846265 Msa1092650:CDS 40.0%
GTTAGGAAGAATTCCACACA+AGG - chr7_3:9846263-9846282 Msa1092650:CDS 40.0%
!! TTATTGCAGTACTGGTGGTT+TGG - chr7_3:9846614-9846633 Msa1092650:intron 40.0%
CTAATGATTGAAGCTGTTGG+AGG - chr7_3:9846951-9846970 Msa1092650:intron 40.0%
TGTTGGAGGAAGAAATGCAA+AGG - chr7_3:9846965-9846984 Msa1092650:intron 40.0%
GTTGGAGGAAGAAATGCAAA+GGG - chr7_3:9846966-9846985 Msa1092650:intron 40.0%
! TAGAGTATATGGGCTTGGTT+TGG - chr7_3:9846989-9847008 Msa1092650:five_prime_UTR 40.0%
!!! TCTGTTTTGACGAGCCTTAA+TGG + chr7_3:9847153-9847172 None:intergenic 40.0%
!! TCTGTTGATAATGCTACTCG+TGG - chr7_3:9847242-9847261 Msa1092650:five_prime_UTR 40.0%
!! CTACAAATGGATTGGTGAAC+AGG - chr7_3:9845894-9845913 Msa1092650:CDS 40.0%
TGAACAGGAGGCAACTATTA+GGG - chr7_3:9845909-9845928 Msa1092650:CDS 40.0%
!! CTTAGCTTTTGATTCCCATG+TGG + chr7_3:9845935-9845954 None:intergenic 40.0%
CACATGGGAATCAAAAGCTA+AGG - chr7_3:9845933-9845952 Msa1092650:CDS 40.0%
CAGTGTCAGAAAAACCCAAA+TGG - chr7_3:9845992-9846011 Msa1092650:CDS 40.0%
CACAGCTTCAGTAATCCATT+TGG + chr7_3:9846010-9846029 None:intergenic 40.0%
!! AATGGATTACTGAAGCTGTG+TGG - chr7_3:9846010-9846029 Msa1092650:CDS 40.0%
! ATGGATTACTGAAGCTGTGT+GGG - chr7_3:9846011-9846030 Msa1092650:CDS 40.0%
AATTGTGATTCAGATGTCGG+AGG - chr7_3:9846096-9846115 Msa1092650:CDS 40.0%
CAAGTGCAGAACAAAAGGTT+AGG - chr7_3:9846246-9846265 Msa1092650:CDS 40.0%
GTTAGGAAGAATTCCACACA+AGG - chr7_3:9846263-9846282 Msa1092650:CDS 40.0%
!! TTATTGCAGTACTGGTGGTT+TGG - chr7_3:9846614-9846633 Msa1092650:intron 40.0%
CTAATGATTGAAGCTGTTGG+AGG - chr7_3:9846951-9846970 Msa1092650:intron 40.0%
TGTTGGAGGAAGAAATGCAA+AGG - chr7_3:9846965-9846984 Msa1092650:intron 40.0%
GTTGGAGGAAGAAATGCAAA+GGG - chr7_3:9846966-9846985 Msa1092650:intron 40.0%
! TAGAGTATATGGGCTTGGTT+TGG - chr7_3:9846989-9847008 Msa1092650:five_prime_UTR 40.0%
!!! TCTGTTTTGACGAGCCTTAA+TGG + chr7_3:9847153-9847172 None:intergenic 40.0%
!! TCTGTTGATAATGCTACTCG+TGG - chr7_3:9847242-9847261 Msa1092650:five_prime_UTR 40.0%
!! CAAATGGATTGGTGAACAGG+AGG - chr7_3:9845897-9845916 Msa1092650:CDS 45.0%
GTGAACAGGAGGCAACTATT+AGG - chr7_3:9845908-9845927 Msa1092650:CDS 45.0%
GGCACAATTGCTTGCAATGT+GGG - chr7_3:9846032-9846051 Msa1092650:CDS 45.0%
GCACAATTGCTTGCAATGTG+GGG - chr7_3:9846033-9846052 Msa1092650:CDS 45.0%
TTGAACAGTTCTCCCTTGTG+TGG + chr7_3:9846279-9846298 None:intergenic 45.0%
TGGACTGCTGAAATGCACTA+TGG - chr7_3:9846452-9846471 Msa1092650:intron 45.0%
TCATCATTACCAGCCTCAGA+AGG + chr7_3:9846894-9846913 None:intergenic 45.0%
AAGGGTAGAGTATATGGGCT+TGG - chr7_3:9846984-9847003 Msa1092650:exon 45.0%
!! GTATATGGGCTTGGTTTGGA+TGG - chr7_3:9846993-9847012 Msa1092650:five_prime_UTR 45.0%
TGGATTTAGACGTTGAGCCA+CGG + chr7_3:9847031-9847050 None:intergenic 45.0%
GATATTGCACGTGGTATGAG+TGG - chr7_3:9847071-9847090 Msa1092650:five_prime_UTR 45.0%
CGTGGAAGCAATGCAAATGT+TGG - chr7_3:9847260-9847279 Msa1092650:five_prime_UTR 45.0%
!! TGCAAATGTTGGTGCTGATG+TGG - chr7_3:9847271-9847290 Msa1092650:five_prime_UTR 45.0%
!! CAAATGGATTGGTGAACAGG+AGG - chr7_3:9845897-9845916 Msa1092650:CDS 45.0%
GTGAACAGGAGGCAACTATT+AGG - chr7_3:9845908-9845927 Msa1092650:CDS 45.0%
GGCACAATTGCTTGCAATGT+GGG - chr7_3:9846032-9846051 Msa1092650:CDS 45.0%
GCACAATTGCTTGCAATGTG+GGG - chr7_3:9846033-9846052 Msa1092650:CDS 45.0%
TTGAACAGTTCTCCCTTGTG+TGG + chr7_3:9846279-9846298 None:intergenic 45.0%
TGGACTGCTGAAATGCACTA+TGG - chr7_3:9846452-9846471 Msa1092650:intron 45.0%
TCATCATTACCAGCCTCAGA+AGG + chr7_3:9846894-9846913 None:intergenic 45.0%
AAGGGTAGAGTATATGGGCT+TGG - chr7_3:9846984-9847003 Msa1092650:exon 45.0%
!! GTATATGGGCTTGGTTTGGA+TGG - chr7_3:9846993-9847012 Msa1092650:five_prime_UTR 45.0%
TGGATTTAGACGTTGAGCCA+CGG + chr7_3:9847031-9847050 None:intergenic 45.0%
GATATTGCACGTGGTATGAG+TGG - chr7_3:9847071-9847090 Msa1092650:five_prime_UTR 45.0%
CGTGGAAGCAATGCAAATGT+TGG - chr7_3:9847260-9847279 Msa1092650:five_prime_UTR 45.0%
!! TGCAAATGTTGGTGCTGATG+TGG - chr7_3:9847271-9847290 Msa1092650:five_prime_UTR 45.0%
AGGCAACTATTAGGGCCACA+TGG - chr7_3:9845917-9845936 Msa1092650:CDS 50.0%
GGCAACTATTAGGGCCACAT+GGG - chr7_3:9845918-9845937 Msa1092650:CDS 50.0%
GGGCACAATTGCTTGCAATG+TGG - chr7_3:9846031-9846050 Msa1092650:CDS 50.0%
GGAGGTTAATTGCACACCCA+AGG - chr7_3:9846114-9846133 Msa1092650:CDS 50.0%
GTCTCAACCTCATCCTTCTG+AGG - chr7_3:9846878-9846897 Msa1092650:intron 50.0%
TTACCAGCCTCAGAAGGATG+AGG + chr7_3:9846888-9846907 None:intergenic 50.0%
! GAGGCTGGTAATGATGAGAG+TGG - chr7_3:9846897-9846916 Msa1092650:intron 50.0%
GGATTTAGACGTTGAGCCAC+GGG + chr7_3:9847030-9847049 None:intergenic 50.0%
TGGTATGAGTGGAGAGGTTG+AGG - chr7_3:9847082-9847101 Msa1092650:five_prime_UTR 50.0%
AGGCAACTATTAGGGCCACA+TGG - chr7_3:9845917-9845936 Msa1092650:CDS 50.0%
GGCAACTATTAGGGCCACAT+GGG - chr7_3:9845918-9845937 Msa1092650:CDS 50.0%
GGGCACAATTGCTTGCAATG+TGG - chr7_3:9846031-9846050 Msa1092650:CDS 50.0%
GGAGGTTAATTGCACACCCA+AGG - chr7_3:9846114-9846133 Msa1092650:CDS 50.0%
GTCTCAACCTCATCCTTCTG+AGG - chr7_3:9846878-9846897 Msa1092650:intron 50.0%
TTACCAGCCTCAGAAGGATG+AGG + chr7_3:9846888-9846907 None:intergenic 50.0%
! GAGGCTGGTAATGATGAGAG+TGG - chr7_3:9846897-9846916 Msa1092650:intron 50.0%
GGATTTAGACGTTGAGCCAC+GGG + chr7_3:9847030-9847049 None:intergenic 50.0%
TGGTATGAGTGGAGAGGTTG+AGG - chr7_3:9847082-9847101 Msa1092650:five_prime_UTR 50.0%
!! CAACCTCATCCTTCTGAGGC+TGG - chr7_3:9846882-9846901 Msa1092650:intron 55.0%
TGCACGTGGTATGAGTGGAG+AGG - chr7_3:9847076-9847095 Msa1092650:five_prime_UTR 55.0%
GAGAGGTTGAGGCGCGTTTA+AGG - chr7_3:9847093-9847112 Msa1092650:five_prime_UTR 55.0%
!! CAACCTCATCCTTCTGAGGC+TGG - chr7_3:9846882-9846901 Msa1092650:intron 55.0%
TGCACGTGGTATGAGTGGAG+AGG - chr7_3:9847076-9847095 Msa1092650:five_prime_UTR 55.0%
GAGAGGTTGAGGCGCGTTTA+AGG - chr7_3:9847093-9847112 Msa1092650:five_prime_UTR 55.0%
GATGGCAGCATGCGCACCCG+TGG - chr7_3:9847011-9847030 Msa1092650:five_prime_UTR 70.0%
GATGGCAGCATGCGCACCCG+TGG - chr7_3:9847011-9847030 Msa1092650:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 9845852 9847301 9845852 ID=Msa1092650;Name=Msa1092650
chr7_3 mRNA 9845852 9847301 9845852 ID=Msa1092650-mRNA-1;Parent=Msa1092650;Name=Msa1092650-mRNA-1;_AED=0.42;_eAED=0.77;_QI=315|0|0.33|1|1|1|3|0|160
chr7_3 exon 9845852 9846322 9845852 ID=Msa1092650-mRNA-1:exon:2697;Parent=Msa1092650-mRNA-1
chr7_3 exon 9846523 9846530 9846523 ID=Msa1092650-mRNA-1:exon:2696;Parent=Msa1092650-mRNA-1
chr7_3 exon 9846983 9847301 9846983 ID=Msa1092650-mRNA-1:exon:2695;Parent=Msa1092650-mRNA-1
chr7_3 five_prime_UTR 9846987 9847301 9846987 ID=Msa1092650-mRNA-1:five_prime_utr;Parent=Msa1092650-mRNA-1
chr7_3 CDS 9846983 9846986 9846983 ID=Msa1092650-mRNA-1:cds;Parent=Msa1092650-mRNA-1
chr7_3 CDS 9846523 9846530 9846523 ID=Msa1092650-mRNA-1:cds;Parent=Msa1092650-mRNA-1
chr7_3 CDS 9845852 9846322 9845852 ID=Msa1092650-mRNA-1:cds;Parent=Msa1092650-mRNA-1
Gene Sequence

>Msa1092650

ATGGTACTGGTGTTATTTATTTTTCAAAAAAACTTCGTAAATCTCTGTTCACAAGCTGAGTCTCAACCTCATCCTTCTGAGGCTGGTAATGATGAGAGTGGTACTCAACCCAAGCCTATTGATTATGATACACTAATGATTGAAGCTGTTGGAGGAAGAAATGCAAAGGGTAGAGTATATGGGCTTGGTTTGGATGGCAGCATGCGCACCCGTGGCTCAACGTCTAAATCCAATAAATATTCAAATTATACTGATATTGCACGTGGTATGAGTGGAGAGGTTGAGGCGCGTTTAAGGCAAAATATTGCAGAGAAACAACAAACAATCAATTCCATTAAGGCTCGTCAAAACAGAATGATTTCCGCATTCGCTAAACATGCAAATATAGATTTGGATTTAATGGATTTAGATGAGGATGATCACTCTGTTGATAATGCTACTCGTGGAAGCAATGCAAATGTTGGTGCTGATGTGGAAGAATAA
Protein sequence

>Msa1092650

MVLVLFIFQKNFVNLCSQAESQPHPSEAGNDESGTQPKPIDYDTLMIEAVGGRNAKGRVYGLGLDGSMRTRGSTSKSNKYSNYTDIARGMSGEVEARLRQNIAEKQQTINSIKARQNRMISAFAKHANIDLDLMDLDEDDHSVDNATRGSNANVGADVEE*