Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094150 | XP_039683716.1 | 98.039 | 51 | 1 | 0 | 16 | 66 | 21 | 71 | 1.57e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094150 | sp|Q1SF86|ATG12_MEDTR | 71.014 | 69 | 10 | 1 | 62 | 120 | 8 | 76 | 4.99e-25 | 96.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094150 | A0A6A4MT11 | 79.310 | 58 | 12 | 0 | 63 | 120 | 4 | 61 | 9.15e-23 | 97.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1051350 | Msa1094150 | 0.842687 | 2.220735e-58 | -8.615850e-47 |
| Msa0567780 | Msa1094150 | 0.827591 | 1.437899e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094150 | MtrunA17_Chr8g0343841 | 71.014 | 69 | 10 | 1 | 62 | 120 | 8 | 76 | 3.67e-26 | 96.7 |
| Msa1094150 | MtrunA17_Chr7g0245921 | 98.039 | 51 | 1 | 0 | 16 | 66 | 21 | 71 | 8.47e-26 | 100 |
| Msa1094150 | MtrunA17_Chr8g0359191 | 94.118 | 51 | 3 | 0 | 16 | 66 | 21 | 71 | 1.81e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1094150 | AT1G54210.3 | 86.957 | 46 | 6 | 0 | 75 | 120 | 32 | 77 | 2.55e-22 | 87.0 |
| Msa1094150 | AT1G54210.1 | 86.957 | 46 | 6 | 0 | 75 | 120 | 32 | 77 | 2.55e-22 | 87.0 |
| Msa1094150 | AT3G13970.4 | 80.435 | 46 | 9 | 0 | 75 | 120 | 30 | 75 | 1.88e-21 | 84.7 |
| Msa1094150 | AT3G13970.1 | 80.435 | 46 | 9 | 0 | 75 | 120 | 30 | 75 | 5.41e-21 | 83.6 |
Find 40 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAGGTACCTTGAATT+TGG | 0.170309 | 7_3:-15260642 | None:intergenic |
| TCTTGGACAAATTAATGATT+TGG | 0.226536 | 7_3:+15257729 | Msa1094150:CDS |
| AAACCCGACAGTCAGAAAAT+TGG | 0.284830 | 7_3:+15257520 | Msa1094150:CDS |
| AAAAGACCCATTAATTAAAA+AGG | 0.285555 | 7_3:-15260661 | None:intergenic |
| CTTGGACAAATTAATGATTT+GGG | 0.305998 | 7_3:+15257730 | Msa1094150:CDS |
| CTTCAGAAGCTGAATGTTGT+AGG | 0.309440 | 7_3:+15260756 | Msa1094150:three_prime_UTR |
| ACTGAAAATGATAAGCTTCT+TGG | 0.322097 | 7_3:+15257712 | Msa1094150:CDS |
| CTTGTTAACATCTTCCAATT+CGG | 0.367665 | 7_3:-15257548 | None:intergenic |
| AAATCAATGACCAGTTCATC+AGG | 0.379567 | 7_3:-15258818 | None:intergenic |
| TTCACCGAACCCTGATGAAC+TGG | 0.404937 | 7_3:+15258808 | Msa1094150:CDS |
| AATTTGGATTGTTTGAGAAT+AGG | 0.414865 | 7_3:-15260626 | None:intergenic |
| GAAAATTGGGAACTCCGAAT+TGG | 0.427639 | 7_3:+15257534 | Msa1094150:CDS |
| TTCATCAGGGTTCGGTGAAA+AGG | 0.435819 | 7_3:-15258804 | None:intergenic |
| GAAATGAATTGACTTCAGTT+AGG | 0.436943 | 7_3:+15257752 | Msa1094150:CDS |
| TCTCAAACAATCCAAATTCA+AGG | 0.437260 | 7_3:+15260631 | Msa1094150:CDS |
| ACAGCTCCACAGGGAGTCAT+TGG | 0.444257 | 7_3:+15258681 | Msa1094150:CDS |
| TTCTTCGCAGACAGCTCCAC+AGG | 0.454460 | 7_3:+15258671 | Msa1094150:CDS |
| AACCCGACAGTCAGAAAATT+GGG | 0.455322 | 7_3:+15257521 | Msa1094150:CDS |
| TATTTGACATGGCAGATAGC+TGG | 0.477191 | 7_3:+15258619 | Msa1094150:CDS |
| AAATTCCTCAAATTCGTCTC+TGG | 0.492306 | 7_3:+15257583 | Msa1094150:CDS |
| ATGACCAGTTCATCAGGGTT+CGG | 0.516263 | 7_3:-15258812 | None:intergenic |
| TGGTACCAGAGACGAATTTG+AGG | 0.519605 | 7_3:-15257588 | None:intergenic |
| CTACTCACTTCTGTTCGTAA+AGG | 0.525264 | 7_3:+15260477 | Msa1094150:CDS |
| TTGTAGGATTAAATTTGAGA+AGG | 0.551555 | 7_3:+15260772 | Msa1094150:three_prime_UTR |
| CTGTTTCCGGATCATGGAGA+AGG | 0.561000 | 7_3:+15257489 | None:intergenic |
| TTTGAGAATAGGAGCATCAC+CGG | 0.562343 | 7_3:-15260615 | None:intergenic |
| GCGAAGAAAGTCTATCACTT+TGG | 0.564644 | 7_3:-15258656 | None:intergenic |
| CTACAACATTCAGCTTCTGA+AGG | 0.573843 | 7_3:-15260755 | None:intergenic |
| CTTTACGAACAGAAGTGAGT+AGG | 0.580826 | 7_3:-15260476 | None:intergenic |
| GTTGTTCATCTCAGAGCCAC+CGG | 0.582178 | 7_3:+15260596 | Msa1094150:CDS |
| TTTACGAACAGAAGTGAGTA+GGG | 0.589690 | 7_3:-15260475 | None:intergenic |
| AAGAAGTGATAGATCACTTG+AGG | 0.612613 | 7_3:+15257689 | Msa1094150:CDS |
| TGAACTTAAAGATTCTTGCA+AGG | 0.614557 | 7_3:+15260205 | Msa1094150:CDS |
| CGAATTGGAAGATGTTAACA+AGG | 0.626051 | 7_3:+15257549 | Msa1094150:CDS |
| AATCAATGACCAGTTCATCA+GGG | 0.626890 | 7_3:-15258817 | None:intergenic |
| TGTTTACCAATGACTCCCTG+TGG | 0.636209 | 7_3:-15258687 | None:intergenic |
| TCTTACATATATATTTGACA+TGG | 0.643855 | 7_3:+15258608 | Msa1094150:CDS |
| TCTTCGCAGACAGCTCCACA+GGG | 0.645509 | 7_3:+15258672 | Msa1094150:CDS |
| GAGAATAGGAGCATCACCGG+TGG | 0.697312 | 7_3:-15260612 | None:intergenic |
| TGAGTTTGTGCTGAAGCGTG+TGG | 0.706230 | 7_3:-15260150 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTACAAAATAAAAAAA+GGG | - | chr7_3:15257801-15257820 | None:intergenic | 10.0% |
| !! | AAAATCTACAAAATAAAAAA+AGG | - | chr7_3:15257802-15257821 | None:intergenic | 10.0% |
| !!! | AATTGATATATTTTTTTCTT+TGG | - | chr7_3:15258082-15258101 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTTTATTTG+TGG | + | chr7_3:15258154-15258173 | Msa1094150:intron | 10.0% |
| !!! | CATTAAAAATTTTAAGATTT+TGG | + | chr7_3:15260702-15260721 | Msa1094150:exon | 10.0% |
| !! | AATCTACAAAATAAAAAAAG+GGG | - | chr7_3:15257800-15257819 | None:intergenic | 15.0% |
| !!! | GATTTTTTTATGTTGAAAAA+AGG | + | chr7_3:15257816-15257835 | Msa1094150:intron | 15.0% |
| !! | TGAAAAATTTATATGAACAA+CGG | + | chr7_3:15257844-15257863 | Msa1094150:intron | 15.0% |
| !!! | ATATCAATTTTAAATAGCTT+TGG | + | chr7_3:15258093-15258112 | Msa1094150:intron | 15.0% |
| !! | TATAATTAACAAGAAGAAAA+AGG | - | chr7_3:15259098-15259117 | None:intergenic | 15.0% |
| !!! | TTATGACATTTTATTTTTTG+AGG | + | chr7_3:15259139-15259158 | Msa1094150:intron | 15.0% |
| !! | TAAGATACACAATATAAAAA+GGG | - | chr7_3:15259899-15259918 | None:intergenic | 15.0% |
| !!! | AACAATATATATTCACATTT+TGG | - | chr7_3:15260115-15260134 | None:intergenic | 15.0% |
| !! | TAATATATTCCAAAAACATA+AGG | - | chr7_3:15260343-15260362 | None:intergenic | 15.0% |
| !! | ATATTATGTCAATTTAGTTA+TGG | + | chr7_3:15260357-15260376 | Msa1094150:intron | 15.0% |
| !! | ATCTACAAAATAAAAAAAGG+GGG | - | chr7_3:15257799-15257818 | None:intergenic | 20.0% |
| !!! | TGAATGATTGTTTTTTTACT+TGG | + | chr7_3:15258368-15258387 | Msa1094150:intron | 20.0% |
| !! | TCTTACATATATATTTGACA+TGG | + | chr7_3:15258608-15258627 | Msa1094150:CDS | 20.0% |
| !! | TGTATAATGTAAGAAATGAT+TGG | + | chr7_3:15258840-15258859 | Msa1094150:intron | 20.0% |
| !! | AATTAATATCTGTAGTTAGA+AGG | + | chr7_3:15259208-15259227 | Msa1094150:intron | 20.0% |
| !! | TATAAAAAGGGACAAAAATA+TGG | - | chr7_3:15259887-15259906 | None:intergenic | 20.0% |
| !! | CTAAGATACACAATATAAAA+AGG | - | chr7_3:15259900-15259919 | None:intergenic | 20.0% |
| !! | TAAGAGAAAATGAAAACATA+AGG | - | chr7_3:15259971-15259990 | None:intergenic | 20.0% |
| !!! | TATGTTTTCATTTTCTCTTA+TGG | + | chr7_3:15259971-15259990 | Msa1094150:intron | 20.0% |
| !!! | ATGTTTTCATTTTCTCTTAT+GGG | + | chr7_3:15259972-15259991 | Msa1094150:intron | 20.0% |
| !!! | AAAATTCTGAAAAATCAAAG+TGG | - | chr7_3:15259998-15260017 | None:intergenic | 20.0% |
| !!! | ACTTTGATTTTTCAGAATTT+TGG | + | chr7_3:15259997-15260016 | Msa1094150:intron | 20.0% |
| !! | GTACAATTCAATACAATTAT+TGG | - | chr7_3:15260417-15260436 | None:intergenic | 20.0% |
| !!! | TACCTTTCCTTTTTAATTAA+TGG | + | chr7_3:15260654-15260673 | Msa1094150:CDS | 20.0% |
| !!! | ACCTTTCCTTTTTAATTAAT+GGG | + | chr7_3:15260655-15260674 | Msa1094150:CDS | 20.0% |
| !! | AAAAGACCCATTAATTAAAA+AGG | - | chr7_3:15260664-15260683 | None:intergenic | 20.0% |
| ! | TCTTGGACAAATTAATGATT+TGG | + | chr7_3:15257729-15257748 | Msa1094150:CDS | 25.0% |
| ! | CTTGGACAAATTAATGATTT+GGG | + | chr7_3:15257730-15257749 | Msa1094150:CDS | 25.0% |
| !! | ATTATGATTCAATTTTGTCC+CGG | + | chr7_3:15257877-15257896 | Msa1094150:intron | 25.0% |
| !!! | TTTTCTTTGGAAATAGTATC+CGG | - | chr7_3:15258069-15258088 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTATTTGTGGTGA+TGG | + | chr7_3:15258160-15258179 | Msa1094150:intron | 25.0% |
| !! | TTAAAATTGTTTTCTCATCC+AGG | + | chr7_3:15258215-15258234 | Msa1094150:intron | 25.0% |
| !! | TAAAATTGTTTTCTCATCCA+GGG | + | chr7_3:15258216-15258235 | Msa1094150:intron | 25.0% |
| ! | CTTACAAGATCTTAGTTTAT+TGG | + | chr7_3:15258399-15258418 | Msa1094150:intron | 25.0% |
| ! | ATATTAATAACTCCAAAACC+AGG | - | chr7_3:15258924-15258943 | None:intergenic | 25.0% |
| ! | TTGTTGTGTAAAAACTATAG+AGG | + | chr7_3:15258974-15258993 | Msa1094150:intron | 25.0% |
| ! | AACTATAGAGGAAAAATTGT+AGG | + | chr7_3:15258986-15259005 | Msa1094150:intron | 25.0% |
| ! | GGTAAAAACATAAAATTGCT+TGG | + | chr7_3:15259040-15259059 | Msa1094150:intron | 25.0% |
| !!! | TGACATTTTATTTTTTGAGG+CGG | + | chr7_3:15259142-15259161 | Msa1094150:intron | 25.0% |
| ! | TGATAGGAATTTGAGTATTA+TGG | - | chr7_3:15259324-15259343 | None:intergenic | 25.0% |
| ! | TTATCAATTGGTATTATTGC+TGG | - | chr7_3:15259420-15259439 | None:intergenic | 25.0% |
| ! | GTGTTTGGATAATTATCAAT+TGG | - | chr7_3:15259432-15259451 | None:intergenic | 25.0% |
| ! | ATTAAGCAGTATGAAATGAT+TGG | - | chr7_3:15259529-15259548 | None:intergenic | 25.0% |
| ! | AATCATTTCATACTGCTTAA+TGG | + | chr7_3:15259528-15259547 | Msa1094150:intron | 25.0% |
| ! | ATCATTTCATACTGCTTAAT+GGG | + | chr7_3:15259529-15259548 | Msa1094150:intron | 25.0% |
| ! | TTTACATGAAATAAATCTGC+TGG | - | chr7_3:15259598-15259617 | None:intergenic | 25.0% |
| ! | GCAGATTTATTTCATGTAAA+TGG | + | chr7_3:15259598-15259617 | Msa1094150:intron | 25.0% |
| !!! | TACTACTGTTTCTGAAATTT+AGG | - | chr7_3:15259744-15259763 | None:intergenic | 25.0% |
| ! | AAATGGAACAAGAATTAACA+CGG | + | chr7_3:15260231-15260250 | Msa1094150:intron | 25.0% |
| !! | TTATTCATGCCTTATGTTTT+TGG | + | chr7_3:15260331-15260350 | Msa1094150:intron | 25.0% |
| ! | AATTTGGATTGTTTGAGAAT+AGG | - | chr7_3:15260629-15260648 | None:intergenic | 25.0% |
| ! | ACCCATTAATTAAAAAGGAA+AGG | - | chr7_3:15260659-15260678 | None:intergenic | 25.0% |
| ! | TTGTAGGATTAAATTTGAGA+AGG | + | chr7_3:15260772-15260791 | Msa1094150:three_prime_UTR | 25.0% |
| CTTGTTAACATCTTCCAATT+CGG | - | chr7_3:15257551-15257570 | None:intergenic | 30.0% | |
| !! | ATTAATTTGTGTTACAGCTG+CGG | + | chr7_3:15257666-15257685 | Msa1094150:intron | 30.0% |
| ACTGAAAATGATAAGCTTCT+TGG | + | chr7_3:15257712-15257731 | Msa1094150:CDS | 30.0% | |
| ! | GAAATGAATTGACTTCAGTT+AGG | + | chr7_3:15257752-15257771 | Msa1094150:CDS | 30.0% |
| TTGAACTTAAGATCTTAGAG+AGG | - | chr7_3:15257934-15257953 | None:intergenic | 30.0% | |
| !! | TTTGGTGTAACTGAATGTTT+TGG | + | chr7_3:15258111-15258130 | Msa1094150:intron | 30.0% |
| ! | TTGGTGTAACTGAATGTTTT+GGG | + | chr7_3:15258112-15258131 | Msa1094150:intron | 30.0% |
| TTCAACCAATTCATTGTCTT+TGG | - | chr7_3:15258245-15258264 | None:intergenic | 30.0% | |
| AAGATCTTAGTTTATTGGCA+TGG | + | chr7_3:15258404-15258423 | Msa1094150:intron | 30.0% | |
| ! | AGAGGAAAAATTGTAGGTTT+TGG | + | chr7_3:15258992-15259011 | Msa1094150:intron | 30.0% |
| !!! | GACATTTTATTTTTTGAGGC+GGG | + | chr7_3:15259143-15259162 | Msa1094150:intron | 30.0% |
| !!! | ACATTTTATTTTTTGAGGCG+GGG | + | chr7_3:15259144-15259163 | Msa1094150:intron | 30.0% |
| ! | GTAGTATGAGATGCTTTTAA+GGG | - | chr7_3:15259280-15259299 | None:intergenic | 30.0% |
| ! | AGTAGTATGAGATGCTTTTA+AGG | - | chr7_3:15259281-15259300 | None:intergenic | 30.0% |
| GATAATTATCCAAACACTTG+AGG | + | chr7_3:15259435-15259454 | Msa1094150:intron | 30.0% | |
| !!! | GATATCTAGCTTTTAATGGA+GGG | - | chr7_3:15259463-15259482 | None:intergenic | 30.0% |
| !!! | TGATATCTAGCTTTTAATGG+AGG | - | chr7_3:15259464-15259483 | None:intergenic | 30.0% |
| TCCATTAAAAGCTAGATATC+AGG | + | chr7_3:15259463-15259482 | Msa1094150:intron | 30.0% | |
| CCATTAAAAGCTAGATATCA+GGG | + | chr7_3:15259464-15259483 | Msa1094150:intron | 30.0% | |
| CATTAAAAGCTAGATATCAG+GGG | + | chr7_3:15259465-15259484 | Msa1094150:intron | 30.0% | |
| ATTAAAAGCTAGATATCAGG+GGG | + | chr7_3:15259466-15259485 | Msa1094150:intron | 30.0% | |
| TCATTTCATACTGCTTAATG+GGG | + | chr7_3:15259530-15259549 | Msa1094150:intron | 30.0% | |
| !!! | TTTCAGAATTTTGGCTTTGA+TGG | + | chr7_3:15260006-15260025 | Msa1094150:intron | 30.0% |
| !!! | ATTCACATTTTGGAATTAGC+AGG | - | chr7_3:15260105-15260124 | None:intergenic | 30.0% |
| TGAACTTAAAGATTCTTGCA+AGG | + | chr7_3:15260205-15260224 | Msa1094150:CDS | 30.0% | |
| !! | GTTTGAAATGCCTTCATTTT+AGG | + | chr7_3:15260273-15260292 | Msa1094150:intron | 30.0% |
| TAAAGACACTCCTAAAATGA+AGG | - | chr7_3:15260286-15260305 | None:intergenic | 30.0% | |
| !! | TTAGGAGTGTCTTTACATAT+TGG | + | chr7_3:15260291-15260310 | Msa1094150:intron | 30.0% |
| GTCAATTTAGTTATGGATCA+TGG | + | chr7_3:15260364-15260383 | Msa1094150:intron | 30.0% | |
| AATTTAGTTATGGATCATGG+TGG | + | chr7_3:15260367-15260386 | Msa1094150:intron | 30.0% | |
| ! | TTTTCATCTTTTTGTGACAG+TGG | + | chr7_3:15260574-15260593 | Msa1094150:intron | 30.0% |
| TCTCAAACAATCCAAATTCA+AGG | + | chr7_3:15260631-15260650 | Msa1094150:CDS | 30.0% | |
| !!! | ATTTTAAGATTTTGGGTGTG+AGG | + | chr7_3:15260710-15260729 | Msa1094150:three_prime_UTR | 30.0% |
| CGAATTGGAAGATGTTAACA+AGG | + | chr7_3:15257549-15257568 | Msa1094150:CDS | 35.0% | |
| AAATTCCTCAAATTCGTCTC+TGG | + | chr7_3:15257583-15257602 | Msa1094150:CDS | 35.0% | |
| CAAGCGTGTAAAATGAAGAA+TGG | - | chr7_3:15257611-15257630 | None:intergenic | 35.0% | |
| AAGAAGTGATAGATCACTTG+AGG | + | chr7_3:15257689-15257708 | Msa1094150:CDS | 35.0% | |
| ATGAATTGGTTGAACATCGA+AGG | + | chr7_3:15258251-15258270 | Msa1094150:intron | 35.0% | |
| ! | TGAACATCGAAGGCTTTTAT+TGG | + | chr7_3:15258261-15258280 | Msa1094150:intron | 35.0% |
| !!! | GAGACTCTCAATCTTTTTTG+TGG | + | chr7_3:15258301-15258320 | Msa1094150:intron | 35.0% |
| AATCAATGACCAGTTCATCA+GGG | - | chr7_3:15258820-15258839 | None:intergenic | 35.0% | |
| AAATCAATGACCAGTTCATC+AGG | - | chr7_3:15258821-15258840 | None:intergenic | 35.0% | |
| ! | ATGATGCATATTTCTGATCC+TGG | + | chr7_3:15258903-15258922 | Msa1094150:intron | 35.0% |
| !! | CATATTTCTGATCCTGGTTT+TGG | + | chr7_3:15258909-15258928 | Msa1094150:intron | 35.0% |
| ACAAAGAGATAGCCACAAAA+AGG | - | chr7_3:15259018-15259037 | None:intergenic | 35.0% | |
| TTTGTGGCTATCTCTTTGTT+TGG | + | chr7_3:15259019-15259038 | Msa1094150:intron | 35.0% | |
| !! | TGTCTAGATAGAAGTACTAC+TGG | + | chr7_3:15259231-15259250 | Msa1094150:intron | 35.0% |
| !! | TATGAGATGCTTTTAAGGGA+GGG | - | chr7_3:15259276-15259295 | None:intergenic | 35.0% |
| ATACTACTCAATGTGAGACT+TGG | + | chr7_3:15259293-15259312 | Msa1094150:intron | 35.0% | |
| TACTACTCAATGTGAGACTT+GGG | + | chr7_3:15259294-15259313 | Msa1094150:intron | 35.0% | |
| GCTTTACCTATTTGAGCTAT+CGG | + | chr7_3:15259391-15259410 | Msa1094150:intron | 35.0% | |
| !!! | CCCTGATATCTAGCTTTTAA+TGG | - | chr7_3:15259467-15259486 | None:intergenic | 35.0% |
| TTAAAAGCTAGATATCAGGG+GGG | + | chr7_3:15259467-15259486 | Msa1094150:intron | 35.0% | |
| AAGCAGTATGAAATGATTGG+TGG | - | chr7_3:15259526-15259545 | None:intergenic | 35.0% | |
| CATTTCATACTGCTTAATGG+GGG | + | chr7_3:15259531-15259550 | Msa1094150:intron | 35.0% | |
| ! | CAAGTTTTCATGCTTGATGA+GGG | - | chr7_3:15259803-15259822 | None:intergenic | 35.0% |
| !!! | GAAAACTTGCTGGTTTTGTA+AGG | + | chr7_3:15259814-15259833 | Msa1094150:intron | 35.0% |
| !!! | TTTTGGCTTTGATGGAAAAC+TGG | + | chr7_3:15260014-15260033 | Msa1094150:intron | 35.0% |
| AACACTAAAATGACAGTTGC+TGG | + | chr7_3:15260070-15260089 | Msa1094150:intron | 35.0% | |
| AGATTCTTGCAAGGTAGAAA+TGG | + | chr7_3:15260214-15260233 | Msa1094150:intron | 35.0% | |
| TTTACGAACAGAAGTGAGTA+GGG | - | chr7_3:15260478-15260497 | None:intergenic | 35.0% | |
| !! | AAGGAAAGGTACCTTGAATT+TGG | - | chr7_3:15260645-15260664 | None:intergenic | 35.0% |
| AAACCCGACAGTCAGAAAAT+TGG | + | chr7_3:15257520-15257539 | Msa1094150:CDS | 40.0% | |
| AACCCGACAGTCAGAAAATT+GGG | + | chr7_3:15257521-15257540 | Msa1094150:CDS | 40.0% | |
| ! | TTCCCAATTTTCTGACTGTC+GGG | - | chr7_3:15257526-15257545 | None:intergenic | 40.0% |
| ! | GTTCCCAATTTTCTGACTGT+CGG | - | chr7_3:15257527-15257546 | None:intergenic | 40.0% |
| GAAAATTGGGAACTCCGAAT+TGG | + | chr7_3:15257534-15257553 | Msa1094150:CDS | 40.0% | |
| ! | ATGATTCAATTTTGTCCCGG+TGG | + | chr7_3:15257880-15257899 | Msa1094150:intron | 40.0% |
| GGTTGCCAAAGACAATGAAT+TGG | + | chr7_3:15258237-15258256 | Msa1094150:intron | 40.0% | |
| ! | ACATCGAAGGCTTTTATTGG+AGG | + | chr7_3:15258264-15258283 | Msa1094150:intron | 40.0% |
| GTTTATTGGCATGGTGATCA+CGG | + | chr7_3:15258413-15258432 | Msa1094150:intron | 40.0% | |
| TTTATTGGCATGGTGATCAC+GGG | + | chr7_3:15258414-15258433 | Msa1094150:intron | 40.0% | |
| TATTTGACATGGCAGATAGC+TGG | + | chr7_3:15258619-15258638 | Msa1094150:CDS | 40.0% | |
| GCGAAGAAAGTCTATCACTT+TGG | - | chr7_3:15258659-15258678 | None:intergenic | 40.0% | |
| CTATTTACTCTACCCTCATC+TGG | + | chr7_3:15258714-15258733 | Msa1094150:intron | 40.0% | |
| !! | TGTAGGTTTTGGCCTTTTTG+TGG | + | chr7_3:15259003-15259022 | Msa1094150:intron | 40.0% |
| !!! | TTATTTTTTGAGGCGGGGAT+TGG | + | chr7_3:15259149-15259168 | Msa1094150:intron | 40.0% |
| GAAGCTCAACAACTACCATA+CGG | - | chr7_3:15259180-15259199 | None:intergenic | 40.0% | |
| !! | GTATGAGATGCTTTTAAGGG+AGG | - | chr7_3:15259277-15259296 | None:intergenic | 40.0% |
| TAAAAGCTAGATATCAGGGG+GGG | + | chr7_3:15259468-15259487 | Msa1094150:intron | 40.0% | |
| ATACTGCTTAATGGGGGAAT+TGG | + | chr7_3:15259537-15259556 | Msa1094150:intron | 40.0% | |
| TTGGACAACCTATAACACCA+AGG | + | chr7_3:15259556-15259575 | Msa1094150:intron | 40.0% | |
| ACAGTAGTAGAACTGAACCA+CGG | + | chr7_3:15259755-15259774 | Msa1094150:intron | 40.0% | |
| TCATGCTTGATGAGGGAAAT+TGG | - | chr7_3:15259796-15259815 | None:intergenic | 40.0% | |
| ! | GCAAGTTTTCATGCTTGATG+AGG | - | chr7_3:15259804-15259823 | None:intergenic | 40.0% |
| CATCAAGCATGAAAACTTGC+TGG | + | chr7_3:15259804-15259823 | Msa1094150:intron | 40.0% | |
| ACATCAGGCTTGTCACATAT+GGG | - | chr7_3:15259864-15259883 | None:intergenic | 40.0% | |
| GGGACAAAAATATGGACATC+AGG | - | chr7_3:15259879-15259898 | None:intergenic | 40.0% | |
| TGTCAACTACGCTTGTTCTA+TGG | + | chr7_3:15260038-15260057 | Msa1094150:intron | 40.0% | |
| CTTTACGAACAGAAGTGAGT+AGG | - | chr7_3:15260479-15260498 | None:intergenic | 40.0% | |
| CTACTCACTTCTGTTCGTAA+AGG | + | chr7_3:15260477-15260496 | Msa1094150:CDS | 40.0% | |
| !! | TTTGAGAATAGGAGCATCAC+CGG | - | chr7_3:15260618-15260637 | None:intergenic | 40.0% |
| CTACAACATTCAGCTTCTGA+AGG | - | chr7_3:15260758-15260777 | None:intergenic | 40.0% | |
| CTTCAGAAGCTGAATGTTGT+AGG | + | chr7_3:15260756-15260775 | Msa1094150:three_prime_UTR | 40.0% | |
| TGGTACCAGAGACGAATTTG+AGG | - | chr7_3:15257591-15257610 | None:intergenic | 45.0% | |
| CGTGCTAACAATGCTTGTGT+TGG | + | chr7_3:15257954-15257973 | Msa1094150:intron | 45.0% | |
| !! | AGCTTTACGCCGACTTCAAT+TGG | + | chr7_3:15257991-15258010 | Msa1094150:intron | 45.0% |
| AATCCCACCATCTACTAGCA+GGG | - | chr7_3:15258019-15258038 | None:intergenic | 45.0% | |
| TTCATTGTCTTTGGCAACCC+TGG | - | chr7_3:15258236-15258255 | None:intergenic | 45.0% | |
| TGTTTACCAATGACTCCCTG+TGG | - | chr7_3:15258690-15258709 | None:intergenic | 45.0% | |
| !! | ACCCTCATCTGGCTCTTTAA+AGG | + | chr7_3:15258725-15258744 | Msa1094150:intron | 45.0% |
| ! | GCCTTTAAAGAGCCAGATGA+GGG | - | chr7_3:15258729-15258748 | None:intergenic | 45.0% |
| ! | AGCCTTTAAAGAGCCAGATG+AGG | - | chr7_3:15258730-15258749 | None:intergenic | 45.0% |
| !! | TTCATCAGGGTTCGGTGAAA+AGG | - | chr7_3:15258807-15258826 | None:intergenic | 45.0% |
| ATGACCAGTTCATCAGGGTT+CGG | - | chr7_3:15258815-15258834 | None:intergenic | 45.0% | |
| GGAGGGTTCATATGAGCTAA+TGG | - | chr7_3:15259259-15259278 | None:intergenic | 45.0% | |
| TGGTTGCCGATAGCTCAAAT+AGG | - | chr7_3:15259400-15259419 | None:intergenic | 45.0% | |
| AAAAGCTAGATATCAGGGGG+GGG | + | chr7_3:15259469-15259488 | Msa1094150:intron | 45.0% | |
| !! | GATAGGGACCTTGGTGTTAT+AGG | - | chr7_3:15259567-15259586 | None:intergenic | 45.0% |
| !! | TCTGCTGGAGCATTGTGATA+GGG | - | chr7_3:15259583-15259602 | None:intergenic | 45.0% |
| !! | ATCTGCTGGAGCATTGTGAT+AGG | - | chr7_3:15259584-15259603 | None:intergenic | 45.0% |
| GGATAGACAAAAAGCAACCG+TGG | - | chr7_3:15259775-15259794 | None:intergenic | 45.0% | |
| GACATCAGGCTTGTCACATA+TGG | - | chr7_3:15259865-15259884 | None:intergenic | 45.0% | |
| ACTACGCTTGTTCTATGGCA+TGG | + | chr7_3:15260043-15260062 | Msa1094150:intron | 45.0% | |
| CTACGCTTGTTCTATGGCAT+GGG | + | chr7_3:15260044-15260063 | Msa1094150:intron | 45.0% | |
| TACGCTTGTTCTATGGCATG+GGG | + | chr7_3:15260045-15260064 | Msa1094150:intron | 45.0% | |
| CGGTGTTCTTCACAATCTGT+TGG | + | chr7_3:15260251-15260270 | Msa1094150:intron | 45.0% | |
| !!! | ATTAAAAATTTTAAGATTTT+GGG | + | chr7_3:15260703-15260722 | Msa1094150:exon | 5.0% |
| AGTCCCAAGTCATACACCAC+CGG | - | chr7_3:15257899-15257918 | None:intergenic | 50.0% | |
| AGCAGGGGACCAATTGAAGT+CGG | - | chr7_3:15258003-15258022 | None:intergenic | 50.0% | |
| ATTGGTCCCCTGCTAGTAGA+TGG | + | chr7_3:15258009-15258028 | Msa1094150:intron | 50.0% | |
| ATCCCACCATCTACTAGCAG+GGG | - | chr7_3:15258018-15258037 | None:intergenic | 50.0% | |
| CAATCCCACCATCTACTAGC+AGG | - | chr7_3:15258020-15258039 | None:intergenic | 50.0% | |
| !! | CTGCTAGTAGATGGTGGGAT+TGG | + | chr7_3:15258018-15258037 | Msa1094150:intron | 50.0% |
| CCAAAGACCACCTAATCCGA+GGG | - | chr7_3:15258045-15258064 | None:intergenic | 50.0% | |
| ! | CCTCGGATTAGGTGGTCTTT+GGG | + | chr7_3:15258043-15258062 | Msa1094150:intron | 50.0% |
| TTCACCGAACCCTGATGAAC+TGG | + | chr7_3:15258808-15258827 | Msa1094150:CDS | 50.0% | |
| !! | CTCAAGAGCGGTGCTATGAT+AGG | - | chr7_3:15259340-15259359 | None:intergenic | 50.0% |
| TGGAGGGTTCCTCAAGTGTT+TGG | - | chr7_3:15259447-15259466 | None:intergenic | 50.0% | |
| AAAGCTAGATATCAGGGGGG+GGG | + | chr7_3:15259470-15259489 | Msa1094150:intron | 50.0% | |
| ! | GAGCATTGTGATAGGGACCT+TGG | - | chr7_3:15259576-15259595 | None:intergenic | 50.0% |
| CAGGCTTGTCACATATGGGA+TGG | - | chr7_3:15259860-15259879 | None:intergenic | 50.0% | |
| TGAGTTTGTGCTGAAGCGTG+TGG | - | chr7_3:15260153-15260172 | None:intergenic | 50.0% | |
| GTTGTTCATCTCAGAGCCAC+CGG | + | chr7_3:15260596-15260615 | Msa1094150:CDS | 50.0% | |
| TGTCCCGGTGGTGTATGACT+TGG | + | chr7_3:15257892-15257911 | Msa1094150:intron | 55.0% | |
| GTCCCGGTGGTGTATGACTT+GGG | + | chr7_3:15257893-15257912 | Msa1094150:intron | 55.0% | |
| GTCCCAAGTCATACACCACC+GGG | - | chr7_3:15257898-15257917 | None:intergenic | 55.0% | |
| GTCCCCTGCTAGTAGATGGT+GGG | + | chr7_3:15258013-15258032 | Msa1094150:intron | 55.0% | |
| !! | AGATGGTGGGATTGGTCCCT+CGG | + | chr7_3:15258026-15258045 | Msa1094150:intron | 55.0% |
| !! | TGGGATTGGTCCCTCGGATT+AGG | + | chr7_3:15258032-15258051 | Msa1094150:intron | 55.0% |
| ! | GATTGGTCCCTCGGATTAGG+TGG | + | chr7_3:15258035-15258054 | Msa1094150:intron | 55.0% |
| ! | CCCTCGGATTAGGTGGTCTT+TGG | + | chr7_3:15258042-15258061 | Msa1094150:intron | 55.0% |
| CCCAAAGACCACCTAATCCG+AGG | - | chr7_3:15258046-15258065 | None:intergenic | 55.0% | |
| GGATTAGGTGGTCTTTGGGC+CGG | + | chr7_3:15258047-15258066 | Msa1094150:intron | 55.0% | |
| CATAGCCCAACACGCACACA+CGG | - | chr7_3:15258189-15258208 | None:intergenic | 55.0% | |
| TTCTTCGCAGACAGCTCCAC+AGG | + | chr7_3:15258671-15258690 | Msa1094150:CDS | 55.0% | |
| TCTTCGCAGACAGCTCCACA+GGG | + | chr7_3:15258672-15258691 | Msa1094150:CDS | 55.0% | |
| ACAGCTCCACAGGGAGTCAT+TGG | + | chr7_3:15258681-15258700 | Msa1094150:CDS | 55.0% | |
| GGGATGTCAGCTCTCAAGAG+CGG | - | chr7_3:15259352-15259371 | None:intergenic | 55.0% | |
| GCTCTTGAGAGCTGACATCC+CGG | + | chr7_3:15259351-15259370 | Msa1094150:intron | 55.0% | |
| AAGCTAGATATCAGGGGGGG+GGG | + | chr7_3:15259471-15259490 | Msa1094150:intron | 55.0% | |
| !! | GAGAATAGGAGCATCACCGG+TGG | - | chr7_3:15260615-15260634 | None:intergenic | 55.0% |
| GGTCCCCTGCTAGTAGATGG+TGG | + | chr7_3:15258012-15258031 | Msa1094150:intron | 60.0% | |
| TGGTTGCCGTGTGTGCGTGT+TGG | + | chr7_3:15258180-15258199 | Msa1094150:intron | 60.0% | |
| GGTTGCCGTGTGTGCGTGTT+GGG | + | chr7_3:15258181-15258200 | Msa1094150:intron | 60.0% | |
| CGTGTGTGCGTGTTGGGCTA+TGG | + | chr7_3:15258187-15258206 | Msa1094150:intron | 60.0% | |
| ! | CGGGGATTGGTAGAGCCGTA+TGG | + | chr7_3:15259162-15259181 | Msa1094150:intron | 60.0% |
| CTTGAGAGCTGACATCCCGG+TGG | + | chr7_3:15259354-15259373 | Msa1094150:intron | 60.0% | |
| CGCTGTAGTGTGCAACCACC+GGG | - | chr7_3:15259372-15259391 | None:intergenic | 60.0% | |
| GCGCTGTAGTGTGCAACCAC+CGG | - | chr7_3:15259373-15259392 | None:intergenic | 60.0% | |
| AGCTAGATATCAGGGGGGGG+GGG | + | chr7_3:15259472-15259491 | Msa1094150:intron | 60.0% | |
| GCTAGATATCAGGGGGGGGG+GGG | + | chr7_3:15259473-15259492 | Msa1094150:intron | 65.0% | |
| CTAGATATCAGGGGGGGGGG+GGG | + | chr7_3:15259474-15259493 | Msa1094150:intron | 65.0% | |
| TAGATATCAGGGGGGGGGGG+GGG | + | chr7_3:15259475-15259494 | Msa1094150:intron | 65.0% | |
| GGGGGGGGGGGGAATAACTA+AGG | + | chr7_3:15259488-15259507 | Msa1094150:intron | 65.0% | |
| AGATATCAGGGGGGGGGGGG+GGG | + | chr7_3:15259476-15259495 | Msa1094150:intron | 70.0% | |
| GATATCAGGGGGGGGGGGGG+GGG | + | chr7_3:15259477-15259496 | Msa1094150:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 15257502 | 15260805 | 15257502 | ID=Msa1094150;Name=Msa1094150 |
| chr7_3 | mRNA | 15257502 | 15260805 | 15257502 | ID=Msa1094150-mRNA-1;Parent=Msa1094150;Name=Msa1094150-mRNA-1;_AED=0.36;_eAED=0.51;_QI=0|0.33|0.28|0.71|0.5|0.71|7|98|203 |
| chr7_3 | exon | 15257502 | 15257604 | 15257502 | ID=Msa1094150-mRNA-1:exon:3493;Parent=Msa1094150-mRNA-1 |
| chr7_3 | exon | 15257683 | 15257773 | 15257683 | ID=Msa1094150-mRNA-1:exon:3494;Parent=Msa1094150-mRNA-1 |
| chr7_3 | exon | 15258600 | 15258702 | 15258600 | ID=Msa1094150-mRNA-1:exon:3495;Parent=Msa1094150-mRNA-1 |
| chr7_3 | exon | 15258785 | 15258847 | 15258785 | ID=Msa1094150-mRNA-1:exon:3496;Parent=Msa1094150-mRNA-1 |
| chr7_3 | exon | 15260144 | 15260226 | 15260144 | ID=Msa1094150-mRNA-1:exon:3497;Parent=Msa1094150-mRNA-1 |
| chr7_3 | exon | 15260444 | 15260498 | 15260444 | ID=Msa1094150-mRNA-1:exon:3498;Parent=Msa1094150-mRNA-1 |
| chr7_3 | exon | 15260594 | 15260805 | 15260594 | ID=Msa1094150-mRNA-1:exon:3499;Parent=Msa1094150-mRNA-1 |
| chr7_3 | CDS | 15257502 | 15257604 | 15257502 | ID=Msa1094150-mRNA-1:cds;Parent=Msa1094150-mRNA-1 |
| chr7_3 | CDS | 15257683 | 15257773 | 15257683 | ID=Msa1094150-mRNA-1:cds;Parent=Msa1094150-mRNA-1 |
| chr7_3 | CDS | 15258600 | 15258702 | 15258600 | ID=Msa1094150-mRNA-1:cds;Parent=Msa1094150-mRNA-1 |
| chr7_3 | CDS | 15258785 | 15258847 | 15258785 | ID=Msa1094150-mRNA-1:cds;Parent=Msa1094150-mRNA-1 |
| chr7_3 | CDS | 15260144 | 15260226 | 15260144 | ID=Msa1094150-mRNA-1:cds;Parent=Msa1094150-mRNA-1 |
| chr7_3 | CDS | 15260444 | 15260498 | 15260444 | ID=Msa1094150-mRNA-1:cds;Parent=Msa1094150-mRNA-1 |
| chr7_3 | CDS | 15260594 | 15260707 | 15260594 | ID=Msa1094150-mRNA-1:cds;Parent=Msa1094150-mRNA-1 |
| chr7_3 | three_prime_UTR | 15260708 | 15260805 | 15260708 | ID=Msa1094150-mRNA-1:three_prime_utr;Parent=Msa1094150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
