Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567780 | XP_009594757.1 | 71.212 | 66 | 19 | 0 | 76 | 141 | 27 | 92 | 1.11e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567780 | sp|Q1SF86|ATG12_MEDTR | 71.014 | 69 | 10 | 1 | 62 | 120 | 8 | 76 | 3.66e-25 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567780 | A0A1S3YZ11 | 71.212 | 66 | 19 | 0 | 76 | 141 | 27 | 92 | 5.28e-23 | 97.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0567780 | 0.801534 | 8.605798e-49 | -8.615850e-47 |
| Msa0043980 | Msa0567780 | 0.806209 | 9.192713e-50 | -8.615850e-47 |
| Msa0045790 | Msa0567780 | 0.815848 | 7.490147e-52 | -8.615850e-47 |
| Msa0046160 | Msa0567780 | 0.817394 | 3.373723e-52 | -8.615850e-47 |
| Msa0157310 | Msa0567780 | 0.800499 | 1.400758e-48 | -8.615850e-47 |
| Msa0173990 | Msa0567780 | 0.810362 | 1.196878e-50 | -8.615850e-47 |
| Msa0178930 | Msa0567780 | 0.802011 | 6.869739e-49 | -8.615850e-47 |
| Msa0197660 | Msa0567780 | 0.836401 | 9.562700e-57 | -8.615850e-47 |
| Msa0217680 | Msa0567780 | 0.800544 | 1.370967e-48 | -8.615850e-47 |
| Msa0220580 | Msa0567780 | 0.809070 | 2.269097e-50 | -8.615850e-47 |
| Msa0223010 | Msa0567780 | 0.808770 | 2.630255e-50 | -8.615850e-47 |
| Msa0379640 | Msa0567780 | 0.808266 | 3.369334e-50 | -8.615850e-47 |
| Msa0398380 | Msa0567780 | 0.806274 | 8.908149e-50 | -8.615850e-47 |
| Msa0479660 | Msa0567780 | 0.806012 | 1.011165e-49 | -8.615850e-47 |
| Msa0239800 | Msa0567780 | 0.837179 | 6.053880e-57 | -8.615850e-47 |
| Msa0277820 | Msa0567780 | 0.820309 | 7.343061e-53 | -8.615850e-47 |
| Msa0287410 | Msa0567780 | 0.802902 | 4.500465e-49 | -8.615850e-47 |
| Msa0317510 | Msa0567780 | 0.837442 | 5.185912e-57 | -8.615850e-47 |
| Msa0319170 | Msa0567780 | 0.810300 | 1.234344e-50 | -8.615850e-47 |
| Msa0339620 | Msa0567780 | 0.801493 | 8.772561e-49 | -8.615850e-47 |
| Msa0484780 | Msa0567780 | 0.817340 | 3.469376e-52 | -8.615850e-47 |
| Msa0512750 | Msa0567780 | 0.810410 | 1.168788e-50 | -8.615850e-47 |
| Msa0512900 | Msa0567780 | 0.808086 | 3.680762e-50 | -8.615850e-47 |
| Msa0518380 | Msa0567780 | 0.810176 | 1.312900e-50 | -8.615850e-47 |
| Msa0529890 | Msa0567780 | 0.800414 | 1.457790e-48 | -8.615850e-47 |
| Msa0536220 | Msa0567780 | 0.805383 | 1.370496e-49 | -8.615850e-47 |
| Msa0567780 | Msa0593650 | 0.805293 | 1.431300e-49 | -8.615850e-47 |
| Msa0567780 | Msa0667050 | 0.805042 | 1.616100e-49 | -8.615850e-47 |
| Msa0567780 | Msa0693380 | 0.810239 | 1.272323e-50 | -8.615850e-47 |
| Msa0567780 | Msa0806660 | 0.801480 | 8.825531e-49 | -8.615850e-47 |
| Msa0567780 | Msa0842650 | 0.807288 | 5.437846e-50 | -8.615850e-47 |
| Msa0567780 | Msa0857640 | 0.801135 | 1.038581e-48 | -8.615850e-47 |
| Msa0567780 | Msa0880950 | 0.802595 | 5.206280e-49 | -8.615850e-47 |
| Msa0567780 | Msa0907070 | 0.801616 | 8.279632e-49 | -8.615850e-47 |
| Msa0567780 | Msa0953550 | 0.805367 | 1.381231e-49 | -8.615850e-47 |
| Msa0567780 | Msa0954130 | 0.805835 | 1.102053e-49 | -8.615850e-47 |
| Msa0567780 | Msa0954550 | 0.809380 | 1.946930e-50 | -8.615850e-47 |
| Msa0567780 | Msa0972670 | 0.804154 | 2.475766e-49 | -8.615850e-47 |
| Msa0567780 | Msa0975220 | 0.817810 | 2.718555e-52 | -8.615850e-47 |
| Msa0567780 | Msa1014540 | 0.815341 | 9.717278e-52 | -8.615850e-47 |
| Msa0567780 | Msa1030970 | 0.802673 | 5.017272e-49 | -8.615850e-47 |
| Msa0567780 | Msa1051350 | 0.932656 | 6.136863e-95 | -8.615850e-47 |
| Msa0567780 | Msa1074190 | 0.912385 | 2.069281e-83 | -8.615850e-47 |
| Msa0567780 | Msa1075540 | 0.821208 | 4.561066e-53 | -8.615850e-47 |
| Msa0567780 | Msa1079590 | 0.800957 | 1.129274e-48 | -8.615850e-47 |
| Msa0567780 | Msa1082500 | 0.830133 | 3.486829e-55 | -8.615850e-47 |
| Msa0567780 | Msa1094150 | 0.827591 | 1.437899e-54 | -8.615850e-47 |
| Msa0567780 | Msa1131220 | 0.826769 | 2.261858e-54 | -8.615850e-47 |
| Msa0567780 | Msa1174040 | 0.823719 | 1.190237e-53 | -8.615850e-47 |
| Msa0567780 | Msa1233500 | 0.800293 | 1.542755e-48 | -8.615850e-47 |
| Msa0567780 | Msa1277660 | 0.816824 | 4.531828e-52 | -8.615850e-47 |
| Msa0567780 | Msa1284680 | 0.801383 | 9.240462e-49 | -8.615850e-47 |
| Msa0567780 | Msa1305190 | 0.810860 | 9.342965e-51 | -8.615850e-47 |
| Msa0567780 | Msa1305340 | 0.823170 | 1.599843e-53 | -8.615850e-47 |
| Msa0567780 | Msa1314340 | 0.817492 | 3.207087e-52 | -8.615850e-47 |
| Msa0567780 | Msa1343760 | 0.815276 | 1.004362e-51 | -8.615850e-47 |
| Msa0567780 | Msa1359040 | 0.813590 | 2.370522e-51 | -8.615850e-47 |
| Msa0567780 | Msa1409700 | 0.800844 | 1.190919e-48 | -8.615850e-47 |
| Msa0567780 | Msa1412640 | 0.811698 | 6.147855e-51 | -8.615850e-47 |
| Msa0567780 | Msa1424750 | 0.808929 | 2.432914e-50 | -8.615850e-47 |
| Msa0567780 | Msa1427230 | 0.815389 | 9.477426e-52 | -8.615850e-47 |
| Msa0567780 | Msa1436480 | 0.816083 | 6.640496e-52 | -8.615850e-47 |
| Msa0567780 | Msa1460830 | 0.819756 | 9.827813e-53 | -8.615850e-47 |
| Msa0567780 | Msa1466540 | 0.804496 | 2.100404e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567780 | MtrunA17_Chr8g0343841 | 71.014 | 69 | 10 | 1 | 62 | 120 | 8 | 76 | 2.69e-26 | 95.9 |
| Msa0567780 | MtrunA17_Chr7g0245921 | 98.039 | 51 | 1 | 0 | 16 | 66 | 21 | 71 | 6.30e-26 | 100 |
| Msa0567780 | MtrunA17_Chr8g0359191 | 94.118 | 51 | 3 | 0 | 16 | 66 | 21 | 71 | 1.38e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567780 | AT3G13970.4 | 76.471 | 51 | 12 | 0 | 75 | 125 | 30 | 80 | 5.30e-23 | 87.8 |
| Msa0567780 | AT1G54210.3 | 86.957 | 46 | 6 | 0 | 75 | 120 | 32 | 77 | 2.02e-22 | 86.3 |
| Msa0567780 | AT1G54210.1 | 86.957 | 46 | 6 | 0 | 75 | 120 | 32 | 77 | 2.02e-22 | 86.3 |
| Msa0567780 | AT3G13970.1 | 80.435 | 46 | 9 | 0 | 75 | 120 | 30 | 75 | 4.06e-21 | 83.2 |
Find 38 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAGGTACCTTGAATT+TGG | 0.170309 | 4_1:+69127321 | None:intergenic |
| TCTTGGACAAATTAATGATT+TGG | 0.226536 | 4_1:-69130223 | Msa0567780:CDS |
| AAACCCGACAGTCAGAAAAT+TGG | 0.284830 | 4_1:-69130432 | Msa0567780:CDS |
| AAAAGACCCATTAATTAAAA+AGG | 0.285555 | 4_1:+69127302 | None:intergenic |
| CTTGGACAAATTAATGATTT+GGG | 0.305998 | 4_1:-69130222 | Msa0567780:CDS |
| CTTCAGAAGCTGAATGTTGT+AGG | 0.309440 | 4_1:-69127207 | Msa0567780:three_prime_UTR |
| ACTGAAAATGATAAGCTTCT+TGG | 0.322097 | 4_1:-69130240 | Msa0567780:CDS |
| CTTGTTAACATCTTCCAATT+CGG | 0.367665 | 4_1:+69130404 | None:intergenic |
| AAATCAATGACCAGTTCATC+AGG | 0.379567 | 4_1:+69129136 | None:intergenic |
| TTCACCGAACCCTGATGAAC+TGG | 0.404937 | 4_1:-69129146 | Msa0567780:CDS |
| AATTTGGATTGTTTGAGAAT+AGG | 0.414865 | 4_1:+69127337 | None:intergenic |
| GAAAATTGGGAACTCCGAAT+TGG | 0.427639 | 4_1:-69130418 | Msa0567780:CDS |
| TTCATCAGGGTTCGGTGAAA+AGG | 0.435819 | 4_1:+69129150 | None:intergenic |
| GAAATGAATTGACTTCAGTT+AGG | 0.436943 | 4_1:-69130200 | Msa0567780:intron |
| TCTCAAACAATCCAAATTCA+AGG | 0.437260 | 4_1:-69127332 | Msa0567780:CDS |
| ACAGCTCCACAGGGAGTCAT+TGG | 0.444257 | 4_1:-69129273 | Msa0567780:intron |
| TTCTTCGCAGACAGCTCCAC+AGG | 0.454460 | 4_1:-69129283 | Msa0567780:CDS |
| AACCCGACAGTCAGAAAATT+GGG | 0.455322 | 4_1:-69130431 | Msa0567780:CDS |
| TATTTGACATGGCAGATAGC+TGG | 0.477191 | 4_1:-69129335 | Msa0567780:CDS |
| AAATTCCTCAAATTCGTCTC+TGG | 0.492306 | 4_1:-69130369 | Msa0567780:intron |
| ATGACCAGTTCATCAGGGTT+CGG | 0.516263 | 4_1:+69129142 | None:intergenic |
| TGGTACCAGAGACGAATTTG+AGG | 0.519605 | 4_1:+69130364 | None:intergenic |
| CTACTCACTTCTGTTCGTAA+AGG | 0.525264 | 4_1:-69127486 | Msa0567780:intron |
| TTGTAGGATTAAATTTGAGA+AGG | 0.551555 | 4_1:-69127191 | Msa0567780:three_prime_UTR |
| CTGTTTCCGGATCATGGAGA+AGG | 0.561000 | 4_1:-69130463 | None:intergenic |
| TTTGAGAATAGGAGCATCAC+CGG | 0.562343 | 4_1:+69127348 | None:intergenic |
| GCGAAGAAAGTCTATCACTT+TGG | 0.564644 | 4_1:+69129298 | None:intergenic |
| CTACAACATTCAGCTTCTGA+AGG | 0.573843 | 4_1:+69127208 | None:intergenic |
| CTTTACGAACAGAAGTGAGT+AGG | 0.580826 | 4_1:+69127487 | None:intergenic |
| GTTGTTCATCTCAGAGCCAC+CGG | 0.582178 | 4_1:-69127367 | Msa0567780:CDS |
| TTTACGAACAGAAGTGAGTA+GGG | 0.589690 | 4_1:+69127488 | None:intergenic |
| AAGAAGTGATAGATCACTTG+AGG | 0.612613 | 4_1:-69130263 | Msa0567780:CDS |
| CGAATTGGAAGATGTTAACA+AGG | 0.626051 | 4_1:-69130403 | Msa0567780:CDS |
| AATCAATGACCAGTTCATCA+GGG | 0.626890 | 4_1:+69129137 | None:intergenic |
| TGTTTACCAATGACTCCCTG+TGG | 0.636209 | 4_1:+69129267 | None:intergenic |
| TCTTACATATATATTTGACA+TGG | 0.643855 | 4_1:-69129346 | Msa0567780:CDS |
| TCTTCGCAGACAGCTCCACA+GGG | 0.645509 | 4_1:-69129282 | Msa0567780:CDS |
| GAGAATAGGAGCATCACCGG+TGG | 0.697312 | 4_1:+69127351 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTACAAAATAAAAAAA+GGG | + | chr4_1:69127479-69127498 | None:intergenic | 10.0% |
| !! | AAAATCTACAAAATAAAAAA+AGG | + | chr4_1:69127480-69127499 | None:intergenic | 10.0% |
| !!! | AATTGATATATTTTTTTCTT+TGG | + | chr4_1:69127760-69127779 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTGTTTATTTG+TGG | - | chr4_1:69127831-69127850 | Msa0567780:intron | 10.0% |
| !!! | CATTAAAAATTTTAAGATTT+TGG | - | chr4_1:69130369-69130388 | Msa0567780:intron | 10.0% |
| !! | AATCTACAAAATAAAAAAAG+GGG | + | chr4_1:69127478-69127497 | None:intergenic | 15.0% |
| !!! | GATTTTTTTATGTTGAAAAA+AGG | - | chr4_1:69127494-69127513 | Msa0567780:CDS | 15.0% |
| !! | TGAAAAATTTATATGAACAA+CGG | - | chr4_1:69127522-69127541 | Msa0567780:intron | 15.0% |
| !!! | ATATCAATTTTAAATAGCTT+TGG | - | chr4_1:69127771-69127790 | Msa0567780:intron | 15.0% |
| !! | TGTATAATGTAAGAAATTAT+TGG | - | chr4_1:69128516-69128535 | Msa0567780:intron | 15.0% |
| !!! | TTATGACATTTTATTTTTTG+AGG | - | chr4_1:69128815-69128834 | Msa0567780:intron | 15.0% |
| !! | TAAGATACACAATATAAAAA+GGG | + | chr4_1:69129566-69129585 | None:intergenic | 15.0% |
| !!! | AACAATATATATTCACATTT+TGG | + | chr4_1:69129782-69129801 | None:intergenic | 15.0% |
| !! | TAATATATTCCAAAAACATA+AGG | + | chr4_1:69130010-69130029 | None:intergenic | 15.0% |
| !! | ATATTATGTCAATTTAGTTA+TGG | - | chr4_1:69130024-69130043 | Msa0567780:intron | 15.0% |
| !! | ATCTACAAAATAAAAAAAGG+GGG | + | chr4_1:69127477-69127496 | None:intergenic | 20.0% |
| !!! | TGAATGATTGTTTTTTTACT+TGG | - | chr4_1:69128045-69128064 | Msa0567780:intron | 20.0% |
| !! | TCTTACATATATATTTGACA+TGG | - | chr4_1:69128284-69128303 | Msa0567780:intron | 20.0% |
| !! | TATAATTAACAAGAAGCAAA+AGG | + | chr4_1:69128774-69128793 | None:intergenic | 20.0% |
| !! | AATTAATATGTGTAGTTAGA+AGG | - | chr4_1:69128884-69128903 | Msa0567780:intron | 20.0% |
| !! | TATAAAAAGGGACAAAAATA+TGG | + | chr4_1:69129554-69129573 | None:intergenic | 20.0% |
| !! | CTAAGATACACAATATAAAA+AGG | + | chr4_1:69129567-69129586 | None:intergenic | 20.0% |
| !! | TAAGAGAAAATGAAAACATA+AGG | + | chr4_1:69129638-69129657 | None:intergenic | 20.0% |
| !!! | TATGTTTTCATTTTCTCTTA+TGG | - | chr4_1:69129638-69129657 | Msa0567780:intron | 20.0% |
| !!! | ATGTTTTCATTTTCTCTTAT+GGG | - | chr4_1:69129639-69129658 | Msa0567780:intron | 20.0% |
| !!! | AAAATTCTGAAAAATCAAAG+TGG | + | chr4_1:69129665-69129684 | None:intergenic | 20.0% |
| !!! | ACTTTGATTTTTCAGAATTT+TGG | - | chr4_1:69129664-69129683 | Msa0567780:intron | 20.0% |
| !! | GTACAATTCAATACAATTAT+TGG | + | chr4_1:69130084-69130103 | None:intergenic | 20.0% |
| !!! | TACCTTTCCTTTTTAATTAA+TGG | - | chr4_1:69130321-69130340 | Msa0567780:intron | 20.0% |
| !!! | ACCTTTCCTTTTTAATTAAT+GGG | - | chr4_1:69130322-69130341 | Msa0567780:intron | 20.0% |
| !! | AAAAGACCCATTAATTAAAA+AGG | + | chr4_1:69130331-69130350 | None:intergenic | 20.0% |
| ! | TCTTGGACAAATTAATGATT+TGG | - | chr4_1:69127407-69127426 | Msa0567780:intron | 25.0% |
| ! | CTTGGACAAATTAATGATTT+GGG | - | chr4_1:69127408-69127427 | Msa0567780:intron | 25.0% |
| !! | ATTATGATTCAATTTTGTCC+CGG | - | chr4_1:69127555-69127574 | Msa0567780:intron | 25.0% |
| !!! | TTTTCTTTGGAAATAGTATC+CGG | + | chr4_1:69127747-69127766 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTATTTGTGGTGA+TGG | - | chr4_1:69127837-69127856 | Msa0567780:intron | 25.0% |
| !! | TTAAAATTGTTTTCTCATCC+AGG | - | chr4_1:69127892-69127911 | Msa0567780:intron | 25.0% |
| !! | TAAAATTGTTTTCTCATCCA+GGG | - | chr4_1:69127893-69127912 | Msa0567780:intron | 25.0% |
| ! | CTTACAAGATCTTAGTTTAT+TGG | - | chr4_1:69128076-69128095 | Msa0567780:intron | 25.0% |
| ! | ATATTAATAACTCCAAAACC+AGG | + | chr4_1:69128600-69128619 | None:intergenic | 25.0% |
| ! | TTGTTGTGTAAAAACAATAG+AGG | - | chr4_1:69128650-69128669 | Msa0567780:intron | 25.0% |
| ! | AACAATAGAGGAAAAATTGT+AGG | - | chr4_1:69128662-69128681 | Msa0567780:intron | 25.0% |
| ! | GGTAAAAACATAAAATTGCT+TGG | - | chr4_1:69128716-69128735 | Msa0567780:intron | 25.0% |
| !!! | TGACATTTTATTTTTTGAGG+CGG | - | chr4_1:69128818-69128837 | Msa0567780:intron | 25.0% |
| ! | TGATAGGAATTTGAGTATTA+TGG | + | chr4_1:69129000-69129019 | None:intergenic | 25.0% |
| ! | TTATCAATTGGTATTATTGC+TGG | + | chr4_1:69129096-69129115 | None:intergenic | 25.0% |
| ! | GTGTTTGGATAATTATCAAT+TGG | + | chr4_1:69129108-69129127 | None:intergenic | 25.0% |
| ! | ATTAAGCAGTATGAAATGAT+TGG | + | chr4_1:69129196-69129215 | None:intergenic | 25.0% |
| ! | AATCATTTCATACTGCTTAA+TGG | - | chr4_1:69129195-69129214 | Msa0567780:intron | 25.0% |
| ! | ATCATTTCATACTGCTTAAT+GGG | - | chr4_1:69129196-69129215 | Msa0567780:intron | 25.0% |
| ! | TTTACATGAAATAAATCTGC+TGG | + | chr4_1:69129265-69129284 | None:intergenic | 25.0% |
| ! | GCAGATTTATTTCATGTAAA+TGG | - | chr4_1:69129265-69129284 | Msa0567780:intron | 25.0% |
| ! | TACTACTGTTTGTGAAATTT+AGG | + | chr4_1:69129411-69129430 | None:intergenic | 25.0% |
| ! | AAATGGAACAAGAATTAACA+CGG | - | chr4_1:69129898-69129917 | Msa0567780:intron | 25.0% |
| !! | TTATTCATGCCTTATGTTTT+TGG | - | chr4_1:69129998-69130017 | Msa0567780:intron | 25.0% |
| ! | AATTTGGATTGTTTGAGAAT+AGG | + | chr4_1:69130296-69130315 | None:intergenic | 25.0% |
| ! | ACCCATTAATTAAAAAGGAA+AGG | + | chr4_1:69130326-69130345 | None:intergenic | 25.0% |
| ! | TTGTAGGATTAAATTTGAGA+AGG | - | chr4_1:69130439-69130458 | Msa0567780:CDS | 25.0% |
| CTTGTTAACATCTTCCAATT+CGG | + | chr4_1:69127229-69127248 | None:intergenic | 30.0% | |
| !! | ATTAATTTGTGTTACAGCTG+CGG | - | chr4_1:69127344-69127363 | Msa0567780:CDS | 30.0% |
| ACTGAAAATGATAAGCTTCT+TGG | - | chr4_1:69127390-69127409 | Msa0567780:intron | 30.0% | |
| ! | GAAATGAATTGACTTCAGTT+AGG | - | chr4_1:69127430-69127449 | Msa0567780:intron | 30.0% |
| TTGAACTTAAGATCTTAGAG+AGG | + | chr4_1:69127612-69127631 | None:intergenic | 30.0% | |
| !! | TTTGGTGTAACTGAATGTTT+TGG | - | chr4_1:69127789-69127808 | Msa0567780:intron | 30.0% |
| ! | TTGGTGTAACTGAATGTTTT+GGG | - | chr4_1:69127790-69127809 | Msa0567780:intron | 30.0% |
| TTCAACCAATTCATTGTCTT+TGG | + | chr4_1:69127922-69127941 | None:intergenic | 30.0% | |
| AAGATCTTAGTTTATTGGCA+TGG | - | chr4_1:69128081-69128100 | Msa0567780:intron | 30.0% | |
| ! | AGAGGAAAAATTGTAGGTTT+TGG | - | chr4_1:69128668-69128687 | Msa0567780:intron | 30.0% |
| !!! | GACATTTTATTTTTTGAGGC+GGG | - | chr4_1:69128819-69128838 | Msa0567780:intron | 30.0% |
| !!! | ACATTTTATTTTTTGAGGCG+GGG | - | chr4_1:69128820-69128839 | Msa0567780:intron | 30.0% |
| ! | GTAGTATGAGATGCTTTTAA+GGG | + | chr4_1:69128956-69128975 | None:intergenic | 30.0% |
| ! | AGTAGTATGAGATGCTTTTA+AGG | + | chr4_1:69128957-69128976 | None:intergenic | 30.0% |
| GATAATTATCCAAACACTTG+AGG | - | chr4_1:69129111-69129130 | Msa0567780:intron | 30.0% | |
| !!! | GATATCTAGCTTTTAATGGA+GGG | + | chr4_1:69129139-69129158 | None:intergenic | 30.0% |
| !!! | TGATATCTAGCTTTTAATGG+AGG | + | chr4_1:69129140-69129159 | None:intergenic | 30.0% |
| TCCATTAAAAGCTAGATATC+AGG | - | chr4_1:69129139-69129158 | Msa0567780:CDS | 30.0% | |
| CCATTAAAAGCTAGATATCA+GGG | - | chr4_1:69129140-69129159 | Msa0567780:CDS | 30.0% | |
| CATTAAAAGCTAGATATCAG+GGG | - | chr4_1:69129141-69129160 | Msa0567780:CDS | 30.0% | |
| ATTAAAAGCTAGATATCAGG+GGG | - | chr4_1:69129142-69129161 | Msa0567780:CDS | 30.0% | |
| TCATTTCATACTGCTTAATG+GGG | - | chr4_1:69129197-69129216 | Msa0567780:intron | 30.0% | |
| !!! | TTTCAGAATTTTGGCTTTGA+TGG | - | chr4_1:69129673-69129692 | Msa0567780:intron | 30.0% |
| !!! | ATTCACATTTTGGAATTAGC+AGG | + | chr4_1:69129772-69129791 | None:intergenic | 30.0% |
| TGAACTTAAAGATTCTTGCA+AGG | - | chr4_1:69129872-69129891 | Msa0567780:intron | 30.0% | |
| !! | GTTTGAAATGCCTTCATTTT+AGG | - | chr4_1:69129940-69129959 | Msa0567780:intron | 30.0% |
| TAAAGACACTCCTAAAATGA+AGG | + | chr4_1:69129953-69129972 | None:intergenic | 30.0% | |
| !! | TTAGGAGTGTCTTTACATAT+TGG | - | chr4_1:69129958-69129977 | Msa0567780:intron | 30.0% |
| GTCAATTTAGTTATGGATCA+TGG | - | chr4_1:69130031-69130050 | Msa0567780:intron | 30.0% | |
| AATTTAGTTATGGATCATGG+TGG | - | chr4_1:69130034-69130053 | Msa0567780:intron | 30.0% | |
| ! | TTTTCATCTTTTTGTGACAG+TGG | - | chr4_1:69130241-69130260 | Msa0567780:CDS | 30.0% |
| TCTCAAACAATCCAAATTCA+AGG | - | chr4_1:69130298-69130317 | Msa0567780:intron | 30.0% | |
| !!! | ATTTTAAGATTTTGGGTGTG+AGG | - | chr4_1:69130377-69130396 | Msa0567780:CDS | 30.0% |
| CGAATTGGAAGATGTTAACA+AGG | - | chr4_1:69127227-69127246 | Msa0567780:three_prime_UTR | 35.0% | |
| AAATTCCTCAAATTCGTCTC+TGG | - | chr4_1:69127261-69127280 | Msa0567780:exon | 35.0% | |
| CAAGCGTGTAAAATGAAGAA+TGG | + | chr4_1:69127289-69127308 | None:intergenic | 35.0% | |
| AAGAAGTGATAGATCACTTG+AGG | - | chr4_1:69127367-69127386 | Msa0567780:CDS | 35.0% | |
| ATGAATTGGTTGAACATCGA+AGG | - | chr4_1:69127928-69127947 | Msa0567780:intron | 35.0% | |
| ! | TGAACATCGAAGGCTTTTAT+TGG | - | chr4_1:69127938-69127957 | Msa0567780:intron | 35.0% |
| !!! | GAGACTCTCAATCTTTTTTG+TGG | - | chr4_1:69127978-69127997 | Msa0567780:intron | 35.0% |
| AATCAATGACCAGTTCATCA+GGG | + | chr4_1:69128496-69128515 | None:intergenic | 35.0% | |
| AAATCAATGACCAGTTCATC+AGG | + | chr4_1:69128497-69128516 | None:intergenic | 35.0% | |
| ! | ATGATGCATATTTCTGATCC+TGG | - | chr4_1:69128579-69128598 | Msa0567780:intron | 35.0% |
| !! | CATATTTCTGATCCTGGTTT+TGG | - | chr4_1:69128585-69128604 | Msa0567780:intron | 35.0% |
| ACAAAGAGATAGCCACAAAA+AGG | + | chr4_1:69128694-69128713 | None:intergenic | 35.0% | |
| TTTGTGGCTATCTCTTTGTT+TGG | - | chr4_1:69128695-69128714 | Msa0567780:intron | 35.0% | |
| !! | TGTCTAGATAGAAGTACTAC+TGG | - | chr4_1:69128907-69128926 | Msa0567780:intron | 35.0% |
| !! | TATGAGATGCTTTTAAGGGA+GGG | + | chr4_1:69128952-69128971 | None:intergenic | 35.0% |
| ATACTACTCAATGTGAGACT+TGG | - | chr4_1:69128969-69128988 | Msa0567780:intron | 35.0% | |
| TACTACTCAATGTGAGACTT+GGG | - | chr4_1:69128970-69128989 | Msa0567780:intron | 35.0% | |
| GCTTTACCTATTTGAGCTAT+CGG | - | chr4_1:69129067-69129086 | Msa0567780:intron | 35.0% | |
| !!! | CCCTGATATCTAGCTTTTAA+TGG | + | chr4_1:69129143-69129162 | None:intergenic | 35.0% |
| TTAAAAGCTAGATATCAGGG+GGG | - | chr4_1:69129143-69129162 | Msa0567780:CDS | 35.0% | |
| AAGCAGTATGAAATGATTGG+TGG | + | chr4_1:69129193-69129212 | None:intergenic | 35.0% | |
| CATTTCATACTGCTTAATGG+GGG | - | chr4_1:69129198-69129217 | Msa0567780:intron | 35.0% | |
| ! | CAAGTTTTCATGCTTGATGA+GGG | + | chr4_1:69129470-69129489 | None:intergenic | 35.0% |
| !!! | GAAAACTTGCTGGTTTTGTA+AGG | - | chr4_1:69129481-69129500 | Msa0567780:intron | 35.0% |
| !!! | TTTTGGCTTTGATGGAAAAC+TGG | - | chr4_1:69129681-69129700 | Msa0567780:intron | 35.0% |
| AACACTAAAATGACAGTTGC+TGG | - | chr4_1:69129737-69129756 | Msa0567780:intron | 35.0% | |
| AGATTCTTGCAAGGTAGAAA+TGG | - | chr4_1:69129881-69129900 | Msa0567780:intron | 35.0% | |
| TTTACGAACAGAAGTGAGTA+GGG | + | chr4_1:69130145-69130164 | None:intergenic | 35.0% | |
| !! | AAGGAAAGGTACCTTGAATT+TGG | + | chr4_1:69130312-69130331 | None:intergenic | 35.0% |
| AAACCCGACAGTCAGAAAAT+TGG | - | chr4_1:69127198-69127217 | Msa0567780:three_prime_UTR | 40.0% | |
| AACCCGACAGTCAGAAAATT+GGG | - | chr4_1:69127199-69127218 | Msa0567780:three_prime_UTR | 40.0% | |
| ! | TTCCCAATTTTCTGACTGTC+GGG | + | chr4_1:69127204-69127223 | None:intergenic | 40.0% |
| ! | GTTCCCAATTTTCTGACTGT+CGG | + | chr4_1:69127205-69127224 | None:intergenic | 40.0% |
| GAAAATTGGGAACTCCGAAT+TGG | - | chr4_1:69127212-69127231 | Msa0567780:three_prime_UTR | 40.0% | |
| ! | ATGATTCAATTTTGTCCCGG+TGG | - | chr4_1:69127558-69127577 | Msa0567780:intron | 40.0% |
| GGTTGCCAAAGACAATGAAT+TGG | - | chr4_1:69127914-69127933 | Msa0567780:intron | 40.0% | |
| ! | ACATCGAAGGCTTTTATTGG+AGG | - | chr4_1:69127941-69127960 | Msa0567780:intron | 40.0% |
| GTTTATTGGCATGGTGATCA+CGG | - | chr4_1:69128090-69128109 | Msa0567780:intron | 40.0% | |
| TTTATTGGCATGGTGATCAC+GGG | - | chr4_1:69128091-69128110 | Msa0567780:intron | 40.0% | |
| TATTTGACATGGCAGATAGC+TGG | - | chr4_1:69128295-69128314 | Msa0567780:intron | 40.0% | |
| GCGAAGAAAGTCTATCACTT+TGG | + | chr4_1:69128335-69128354 | None:intergenic | 40.0% | |
| CTATTTACTCTACCCTCATC+TGG | - | chr4_1:69128390-69128409 | Msa0567780:intron | 40.0% | |
| !! | TGTAGGTTTTGGCCTTTTTG+TGG | - | chr4_1:69128679-69128698 | Msa0567780:intron | 40.0% |
| !!! | TTATTTTTTGAGGCGGGGAT+TGG | - | chr4_1:69128825-69128844 | Msa0567780:intron | 40.0% |
| GAAGCTCAACAACTACCATA+CGG | + | chr4_1:69128856-69128875 | None:intergenic | 40.0% | |
| !! | GTATGAGATGCTTTTAAGGG+AGG | + | chr4_1:69128953-69128972 | None:intergenic | 40.0% |
| TAAAAGCTAGATATCAGGGG+GGG | - | chr4_1:69129144-69129163 | Msa0567780:CDS | 40.0% | |
| ATACTGCTTAATGGGGGAAT+TGG | - | chr4_1:69129204-69129223 | Msa0567780:intron | 40.0% | |
| TTGGACAACCTATAACACCA+AGG | - | chr4_1:69129223-69129242 | Msa0567780:intron | 40.0% | |
| ACAGTAGTAGAACTGAACCA+CGG | - | chr4_1:69129422-69129441 | Msa0567780:intron | 40.0% | |
| TCATGCTTGATGAGGGAAAT+TGG | + | chr4_1:69129463-69129482 | None:intergenic | 40.0% | |
| ! | GCAAGTTTTCATGCTTGATG+AGG | + | chr4_1:69129471-69129490 | None:intergenic | 40.0% |
| CATCAAGCATGAAAACTTGC+TGG | - | chr4_1:69129471-69129490 | Msa0567780:intron | 40.0% | |
| ACATCAGGCTTGTCACATAT+GGG | + | chr4_1:69129531-69129550 | None:intergenic | 40.0% | |
| GGGACAAAAATATGGACATC+AGG | + | chr4_1:69129546-69129565 | None:intergenic | 40.0% | |
| TGTCAACTACGCTTGTTCTA+TGG | - | chr4_1:69129705-69129724 | Msa0567780:intron | 40.0% | |
| CTTTACGAACAGAAGTGAGT+AGG | + | chr4_1:69130146-69130165 | None:intergenic | 40.0% | |
| CTACTCACTTCTGTTCGTAA+AGG | - | chr4_1:69130144-69130163 | Msa0567780:intron | 40.0% | |
| !! | TTTGAGAATAGGAGCATCAC+CGG | + | chr4_1:69130285-69130304 | None:intergenic | 40.0% |
| CTACAACATTCAGCTTCTGA+AGG | + | chr4_1:69130425-69130444 | None:intergenic | 40.0% | |
| CTTCAGAAGCTGAATGTTGT+AGG | - | chr4_1:69130423-69130442 | Msa0567780:CDS | 40.0% | |
| TGGTACCAGAGACGAATTTG+AGG | + | chr4_1:69127269-69127288 | None:intergenic | 45.0% | |
| CGTGCTAACAATGCTTGTGT+TGG | - | chr4_1:69127632-69127651 | Msa0567780:intron | 45.0% | |
| !! | AGCTTTACGCCGACTTCAAT+TGG | - | chr4_1:69127669-69127688 | Msa0567780:intron | 45.0% |
| AATCCCACCATCTACTAGCA+GGG | + | chr4_1:69127697-69127716 | None:intergenic | 45.0% | |
| TTCATTGTCTTTGGCAACCC+TGG | + | chr4_1:69127913-69127932 | None:intergenic | 45.0% | |
| TGTTTACCAATGACTCCCTG+TGG | + | chr4_1:69128366-69128385 | None:intergenic | 45.0% | |
| !! | ACCCTCATCTGGCTCTTTAA+AGG | - | chr4_1:69128401-69128420 | Msa0567780:intron | 45.0% |
| ! | GCCTTTAAAGAGCCAGATGA+GGG | + | chr4_1:69128405-69128424 | None:intergenic | 45.0% |
| ! | AGCCTTTAAAGAGCCAGATG+AGG | + | chr4_1:69128406-69128425 | None:intergenic | 45.0% |
| !! | TTCATCAGGGTTCGGTGAAA+AGG | + | chr4_1:69128483-69128502 | None:intergenic | 45.0% |
| ATGACCAGTTCATCAGGGTT+CGG | + | chr4_1:69128491-69128510 | None:intergenic | 45.0% | |
| GGAGGGTTCATATGAGCTAA+TGG | + | chr4_1:69128935-69128954 | None:intergenic | 45.0% | |
| TGGTTGCCGATAGCTCAAAT+AGG | + | chr4_1:69129076-69129095 | None:intergenic | 45.0% | |
| TATCAGGGGGGGAATAACTA+AGG | - | chr4_1:69129155-69129174 | Msa0567780:CDS | 45.0% | |
| !! | GATAGGGACCTTGGTGTTAT+AGG | + | chr4_1:69129234-69129253 | None:intergenic | 45.0% |
| !! | TCTGCTGGAGCATTGTGATA+GGG | + | chr4_1:69129250-69129269 | None:intergenic | 45.0% |
| !! | ATCTGCTGGAGCATTGTGAT+AGG | + | chr4_1:69129251-69129270 | None:intergenic | 45.0% |
| GGATAGACAAAAAGCAACCG+TGG | + | chr4_1:69129442-69129461 | None:intergenic | 45.0% | |
| GACATCAGGCTTGTCACATA+TGG | + | chr4_1:69129532-69129551 | None:intergenic | 45.0% | |
| ACTACGCTTGTTCTATGGCA+TGG | - | chr4_1:69129710-69129729 | Msa0567780:intron | 45.0% | |
| CTACGCTTGTTCTATGGCAT+GGG | - | chr4_1:69129711-69129730 | Msa0567780:intron | 45.0% | |
| TACGCTTGTTCTATGGCATG+GGG | - | chr4_1:69129712-69129731 | Msa0567780:intron | 45.0% | |
| CGGTGTTCTTCACAATCTGT+TGG | - | chr4_1:69129918-69129937 | Msa0567780:intron | 45.0% | |
| !!! | ATTAAAAATTTTAAGATTTT+GGG | - | chr4_1:69130370-69130389 | Msa0567780:CDS | 5.0% |
| AGTCCCAAGTCATACACCAC+CGG | + | chr4_1:69127577-69127596 | None:intergenic | 50.0% | |
| AGCAGGGGACCAATTGAAGT+CGG | + | chr4_1:69127681-69127700 | None:intergenic | 50.0% | |
| ATTGGTCCCCTGCTAGTAGA+TGG | - | chr4_1:69127687-69127706 | Msa0567780:intron | 50.0% | |
| ATCCCACCATCTACTAGCAG+GGG | + | chr4_1:69127696-69127715 | None:intergenic | 50.0% | |
| CAATCCCACCATCTACTAGC+AGG | + | chr4_1:69127698-69127717 | None:intergenic | 50.0% | |
| !! | CTGCTAGTAGATGGTGGGAT+TGG | - | chr4_1:69127696-69127715 | Msa0567780:intron | 50.0% |
| CCAAAGACCACCTAATCCGA+GGG | + | chr4_1:69127723-69127742 | None:intergenic | 50.0% | |
| ! | CCTCGGATTAGGTGGTCTTT+GGG | - | chr4_1:69127721-69127740 | Msa0567780:intron | 50.0% |
| TTCACCGAACCCTGATGAAC+TGG | - | chr4_1:69128484-69128503 | Msa0567780:intron | 50.0% | |
| !! | CTCAAGAGCGGTGCTATGAT+AGG | + | chr4_1:69129016-69129035 | None:intergenic | 50.0% |
| TGGAGGGTTCCTCAAGTGTT+TGG | + | chr4_1:69129123-69129142 | None:intergenic | 50.0% | |
| ! | GAGCATTGTGATAGGGACCT+TGG | + | chr4_1:69129243-69129262 | None:intergenic | 50.0% |
| CAGGCTTGTCACATATGGGA+TGG | + | chr4_1:69129527-69129546 | None:intergenic | 50.0% | |
| TGAGTTTGTGCTGAAGCGTG+TGG | + | chr4_1:69129820-69129839 | None:intergenic | 50.0% | |
| GTTGTTCATCTCAGAGCCAC+CGG | - | chr4_1:69130263-69130282 | Msa0567780:CDS | 50.0% | |
| TGTCCCGGTGGTGTATGACT+TGG | - | chr4_1:69127570-69127589 | Msa0567780:intron | 55.0% | |
| GTCCCGGTGGTGTATGACTT+GGG | - | chr4_1:69127571-69127590 | Msa0567780:intron | 55.0% | |
| GTCCCAAGTCATACACCACC+GGG | + | chr4_1:69127576-69127595 | None:intergenic | 55.0% | |
| GTCCCCTGCTAGTAGATGGT+GGG | - | chr4_1:69127691-69127710 | Msa0567780:intron | 55.0% | |
| !! | AGATGGTGGGATTGGTCCCT+CGG | - | chr4_1:69127704-69127723 | Msa0567780:intron | 55.0% |
| !! | TGGGATTGGTCCCTCGGATT+AGG | - | chr4_1:69127710-69127729 | Msa0567780:intron | 55.0% |
| ! | GATTGGTCCCTCGGATTAGG+TGG | - | chr4_1:69127713-69127732 | Msa0567780:intron | 55.0% |
| ! | CCCTCGGATTAGGTGGTCTT+TGG | - | chr4_1:69127720-69127739 | Msa0567780:intron | 55.0% |
| CCCAAAGACCACCTAATCCG+AGG | + | chr4_1:69127724-69127743 | None:intergenic | 55.0% | |
| GGATTAGGTGGTCTTTGGGC+CGG | - | chr4_1:69127725-69127744 | Msa0567780:intron | 55.0% | |
| CATAGCCCAACACGCACACA+CGG | + | chr4_1:69127866-69127885 | None:intergenic | 55.0% | |
| TTCTTCGCAGACAGCTCCAC+AGG | - | chr4_1:69128347-69128366 | Msa0567780:intron | 55.0% | |
| TCTTCGCAGACAGCTCCACA+GGG | - | chr4_1:69128348-69128367 | Msa0567780:intron | 55.0% | |
| ACAGCTCCACAGGGAGTCAT+TGG | - | chr4_1:69128357-69128376 | Msa0567780:intron | 55.0% | |
| GGGATGTCAGCTCTCAAGAG+CGG | + | chr4_1:69129028-69129047 | None:intergenic | 55.0% | |
| GCTCTTGAGAGCTGACATCC+CGG | - | chr4_1:69129027-69129046 | Msa0567780:intron | 55.0% | |
| !! | GAGAATAGGAGCATCACCGG+TGG | + | chr4_1:69130282-69130301 | None:intergenic | 55.0% |
| GGTCCCCTGCTAGTAGATGG+TGG | - | chr4_1:69127690-69127709 | Msa0567780:intron | 60.0% | |
| TGGTTGCCGTGTGTGCGTGT+TGG | - | chr4_1:69127857-69127876 | Msa0567780:intron | 60.0% | |
| GGTTGCCGTGTGTGCGTGTT+GGG | - | chr4_1:69127858-69127877 | Msa0567780:intron | 60.0% | |
| CGTGTGTGCGTGTTGGGCTA+TGG | - | chr4_1:69127864-69127883 | Msa0567780:intron | 60.0% | |
| ! | CGGGGATTGGTAGAGCCGTA+TGG | - | chr4_1:69128838-69128857 | Msa0567780:intron | 60.0% |
| CTTGAGAGCTGACATCCCGG+TGG | - | chr4_1:69129030-69129049 | Msa0567780:intron | 60.0% | |
| CGCTGTAGTGTGCAACCACC+GGG | + | chr4_1:69129048-69129067 | None:intergenic | 60.0% | |
| GCGCTGTAGTGTGCAACCAC+CGG | + | chr4_1:69129049-69129068 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 69127180 | 69130472 | 69127180 | ID=Msa0567780;Name=Msa0567780 |
| chr4_1 | mRNA | 69127180 | 69130472 | 69127180 | ID=Msa0567780-mRNA-1;Parent=Msa0567780;Name=Msa0567780-mRNA-1;_AED=0.44;_eAED=0.47;_QI=0|0.4|0.33|0.66|0.4|0.66|6|98|170 |
| chr4_1 | exon | 69127180 | 69127391 | 69127180 | ID=Msa0567780-mRNA-1:exon:23108;Parent=Msa0567780-mRNA-1 |
| chr4_1 | exon | 69127487 | 69127525 | 69127487 | ID=Msa0567780-mRNA-1:exon:23107;Parent=Msa0567780-mRNA-1 |
| chr4_1 | exon | 69129129 | 69129191 | 69129129 | ID=Msa0567780-mRNA-1:exon:23106;Parent=Msa0567780-mRNA-1 |
| chr4_1 | exon | 69129274 | 69129376 | 69129274 | ID=Msa0567780-mRNA-1:exon:23105;Parent=Msa0567780-mRNA-1 |
| chr4_1 | exon | 69130201 | 69130291 | 69130201 | ID=Msa0567780-mRNA-1:exon:23104;Parent=Msa0567780-mRNA-1 |
| chr4_1 | exon | 69130370 | 69130472 | 69130370 | ID=Msa0567780-mRNA-1:exon:23103;Parent=Msa0567780-mRNA-1 |
| chr4_1 | CDS | 69130370 | 69130472 | 69130370 | ID=Msa0567780-mRNA-1:cds;Parent=Msa0567780-mRNA-1 |
| chr4_1 | CDS | 69130201 | 69130291 | 69130201 | ID=Msa0567780-mRNA-1:cds;Parent=Msa0567780-mRNA-1 |
| chr4_1 | CDS | 69129274 | 69129376 | 69129274 | ID=Msa0567780-mRNA-1:cds;Parent=Msa0567780-mRNA-1 |
| chr4_1 | CDS | 69129129 | 69129191 | 69129129 | ID=Msa0567780-mRNA-1:cds;Parent=Msa0567780-mRNA-1 |
| chr4_1 | CDS | 69127487 | 69127525 | 69127487 | ID=Msa0567780-mRNA-1:cds;Parent=Msa0567780-mRNA-1 |
| chr4_1 | CDS | 69127278 | 69127391 | 69127278 | ID=Msa0567780-mRNA-1:cds;Parent=Msa0567780-mRNA-1 |
| chr4_1 | three_prime_UTR | 69127180 | 69127277 | 69127180 | ID=Msa0567780-mRNA-1:three_prime_utr;Parent=Msa0567780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
