Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051350 | XP_010270804.1 | 58.621 | 87 | 35 | 1 | 35 | 121 | 8 | 93 | 9.59e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051350 | sp|Q1SF86|ATG12_MEDTR | 80.702 | 57 | 11 | 0 | 65 | 121 | 20 | 76 | 9.48e-25 | 94.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051350 | A0A1U8AW25 | 58.621 | 87 | 35 | 1 | 35 | 121 | 8 | 93 | 4.58e-23 | 97.8 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045790 | Msa1051350 | 0.800806 | 1.212428e-48 | -8.615850e-47 |
| Msa0046160 | Msa1051350 | 0.802459 | 5.553331e-49 | -8.615850e-47 |
| Msa0667050 | Msa1051350 | 0.805519 | 1.283731e-49 | -8.615850e-47 |
| Msa0703780 | Msa1051350 | 0.804309 | 2.298484e-49 | -8.615850e-47 |
| Msa0121380 | Msa1051350 | 0.803093 | 4.108928e-49 | -8.615850e-47 |
| Msa0197660 | Msa1051350 | 0.833806 | 4.314897e-56 | -8.615850e-47 |
| Msa0223260 | Msa1051350 | 0.801656 | 8.123040e-49 | -8.615850e-47 |
| Msa1035480 | Msa1051350 | 0.805231 | 1.474900e-49 | -8.615850e-47 |
| Msa1051350 | Msa1074190 | 0.886010 | 4.959129e-72 | -8.615850e-47 |
| Msa1051350 | Msa1075540 | 0.823369 | 1.437388e-53 | -8.615850e-47 |
| Msa1051350 | Msa1082500 | 0.815000 | 1.156850e-51 | -8.615850e-47 |
| Msa1051350 | Msa1094150 | 0.842687 | 2.220735e-58 | -8.615850e-47 |
| Msa1051350 | Msa1174040 | 0.823555 | 1.300743e-53 | -8.615850e-47 |
| Msa1051350 | Msa1277660 | 0.813248 | 2.818479e-51 | -8.615850e-47 |
| Msa1051350 | Msa1412640 | 0.803104 | 4.087119e-49 | -8.615850e-47 |
| Msa1051350 | Msa1424750 | 0.804520 | 2.076709e-49 | -8.615850e-47 |
| Msa0239800 | Msa1051350 | 0.834315 | 3.218830e-56 | -8.615850e-47 |
| Msa0277820 | Msa1051350 | 0.813115 | 3.013158e-51 | -8.615850e-47 |
| Msa0317510 | Msa1051350 | 0.827252 | 1.734028e-54 | -8.615850e-47 |
| Msa0484780 | Msa1051350 | 0.803483 | 3.412629e-49 | -8.615850e-47 |
| Msa0512750 | Msa1051350 | 0.816147 | 6.423635e-52 | -8.615850e-47 |
| Msa0518380 | Msa1051350 | 0.810952 | 8.921734e-51 | -8.615850e-47 |
| Msa0567780 | Msa1051350 | 0.932656 | 6.136863e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051350 | MtrunA17_Chr8g0343841 | 80.702 | 57 | 11 | 0 | 65 | 121 | 20 | 76 | 6.98e-26 | 94.7 |
| Msa1051350 | MtrunA17_Chr7g0245921 | 97.959 | 49 | 1 | 0 | 16 | 64 | 21 | 69 | 3.74e-25 | 98.2 |
| Msa1051350 | MtrunA17_Chr8g0359191 | 93.878 | 49 | 3 | 0 | 16 | 64 | 21 | 69 | 8.16e-24 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1051350 | AT3G13970.4 | 76.471 | 51 | 12 | 0 | 76 | 126 | 30 | 80 | 6.56e-23 | 87.4 |
| Msa1051350 | AT1G54210.3 | 73.684 | 57 | 15 | 0 | 65 | 121 | 21 | 77 | 2.10e-22 | 86.3 |
| Msa1051350 | AT1G54210.1 | 73.684 | 57 | 15 | 0 | 65 | 121 | 21 | 77 | 2.10e-22 | 86.3 |
| Msa1051350 | AT3G13970.1 | 80.435 | 46 | 9 | 0 | 76 | 121 | 30 | 75 | 4.27e-21 | 82.8 |
Find 38 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAAAGGTACCTTGAATT+TGG | 0.170309 | 7_2:+18226840 | None:intergenic |
| TCTTGGACAAATTAATGATT+TGG | 0.226536 | 7_2:-18229945 | Msa1051350:CDS |
| AAACCCGACAGTCAGAAAAT+TGG | 0.284830 | 7_2:-18230154 | Msa1051350:CDS |
| AAAAGACCCATTAATTAAAA+AGG | 0.285555 | 7_2:+18226821 | None:intergenic |
| CTTGGACAAATTAATGATTT+GGG | 0.305998 | 7_2:-18229944 | Msa1051350:CDS |
| CTTCAGAAGCTGAATGTTGT+AGG | 0.309440 | 7_2:-18226726 | Msa1051350:three_prime_UTR |
| ACTGAAAATGATAAGCTTCT+TGG | 0.322097 | 7_2:-18229962 | Msa1051350:CDS |
| CTTGTTAACATCTTCCAATT+CGG | 0.367665 | 7_2:+18230126 | None:intergenic |
| AAATCAATGACCAGTTCATC+AGG | 0.379567 | 7_2:+18228655 | None:intergenic |
| TTCACCGAACCCTGATGAAC+TGG | 0.404937 | 7_2:-18228665 | Msa1051350:CDS |
| GCATTCGGGAAATAGATTTC+GGG | 0.407195 | 7_2:-18228896 | Msa1051350:intron |
| AATTTGGATTGTTTGAGAAT+AGG | 0.414865 | 7_2:+18226856 | None:intergenic |
| GAAAATTGGGAACTCCGAAT+TGG | 0.427639 | 7_2:-18230140 | Msa1051350:CDS |
| TTCATCAGGGTTCGGTGAAA+AGG | 0.435819 | 7_2:+18228669 | None:intergenic |
| TCTCAAACAATCCAAATTCA+AGG | 0.437260 | 7_2:-18226851 | Msa1051350:CDS |
| ACAGCTCCACAGGGAGTCAT+TGG | 0.444257 | 7_2:-18228792 | Msa1051350:intron |
| TTCTTCGCAGACAGCTCCAC+AGG | 0.454460 | 7_2:-18228802 | Msa1051350:CDS |
| AACCCGACAGTCAGAAAATT+GGG | 0.455322 | 7_2:-18230153 | Msa1051350:CDS |
| TATTTGACATGGCAGATAGC+TGG | 0.477191 | 7_2:-18228854 | Msa1051350:CDS |
| AAATTCCTCAAATTCGTCTC+TGG | 0.492306 | 7_2:-18230091 | Msa1051350:intron |
| ATGACCAGTTCATCAGGGTT+CGG | 0.516263 | 7_2:+18228661 | None:intergenic |
| TGGTACCAGAGACGAATTTG+AGG | 0.519605 | 7_2:+18230086 | None:intergenic |
| CTACTCACTTCTGTTCGTAA+AGG | 0.525264 | 7_2:-18227005 | Msa1051350:intron |
| TTGTAGGATTAAATTTGAGA+AGG | 0.551555 | 7_2:-18226710 | Msa1051350:three_prime_UTR |
| CTGTTTCCGGATCATGGAGA+AGG | 0.561000 | 7_2:-18230185 | None:intergenic |
| TTTGAGAATAGGAGCATCAC+CGG | 0.562343 | 7_2:+18226867 | None:intergenic |
| GCGAAGAAAGTCTATCACTT+TGG | 0.564644 | 7_2:+18228817 | None:intergenic |
| CTACAACATTCAGCTTCTGA+AGG | 0.573843 | 7_2:+18226727 | None:intergenic |
| CTTTACGAACAGAAGTGAGT+AGG | 0.580826 | 7_2:+18227006 | None:intergenic |
| GTTGTTCATCTCAGAGCCAC+CGG | 0.582178 | 7_2:-18226886 | Msa1051350:CDS |
| TTTACGAACAGAAGTGAGTA+GGG | 0.589690 | 7_2:+18227007 | None:intergenic |
| CACATCTCATATATTTGACA+TGG | 0.605607 | 7_2:-18228865 | Msa1051350:CDS |
| AAGAAGTGATAGATCACTTG+AGG | 0.612613 | 7_2:-18229985 | Msa1051350:CDS |
| CGAATTGGAAGATGTTAACA+AGG | 0.626051 | 7_2:-18230125 | Msa1051350:CDS |
| AATCAATGACCAGTTCATCA+GGG | 0.626890 | 7_2:+18228656 | None:intergenic |
| TGTTTACCAATGACTCCCTG+TGG | 0.636209 | 7_2:+18228786 | None:intergenic |
| TCTTCGCAGACAGCTCCACA+GGG | 0.645509 | 7_2:-18228801 | Msa1051350:CDS |
| GAGAATAGGAGCATCACCGG+TGG | 0.697312 | 7_2:+18226870 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCTACAAAATAAAAAAA+GGG | + | chr7_2:18226998-18227017 | None:intergenic | 10.0% |
| !! | AAAATCTACAAAATAAAAAA+AGG | + | chr7_2:18226999-18227018 | None:intergenic | 10.0% |
| !!! | AATTGATATATTTTTTTCTT+TGG | + | chr7_2:18227279-18227298 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTGTTTATTTG+TGG | - | chr7_2:18227351-18227370 | Msa1051350:intron | 10.0% |
| !! | AAAAATCTTACATATATATT+TGG | - | chr7_2:18227799-18227818 | Msa1051350:intron | 10.0% |
| !!! | CATTAAAAATTTTAAGATTT+TGG | - | chr7_2:18230091-18230110 | Msa1051350:intron | 10.0% |
| !! | AATCTACAAAATAAAAAAAG+GGG | + | chr7_2:18226997-18227016 | None:intergenic | 15.0% |
| !!! | GATTTTTTTATGTTGAAAAA+AGG | - | chr7_2:18227013-18227032 | Msa1051350:CDS | 15.0% |
| !!! | ATATCAATTTTAAATAGCTT+TGG | - | chr7_2:18227290-18227309 | Msa1051350:intron | 15.0% |
| !! | TGTATAATGTAAGAAATTAT+TGG | - | chr7_2:18228238-18228257 | Msa1051350:intron | 15.0% |
| !!! | TTATGACATTTTATTTTTTG+AGG | - | chr7_2:18228537-18228556 | Msa1051350:intron | 15.0% |
| !! | TAAGATACACAATATAAAAA+GGG | + | chr7_2:18229288-18229307 | None:intergenic | 15.0% |
| !!! | AACAATATATATTCACATTT+TGG | + | chr7_2:18229504-18229523 | None:intergenic | 15.0% |
| !! | TAATATATTCCAAAAACATA+AGG | + | chr7_2:18229732-18229751 | None:intergenic | 15.0% |
| !! | ATATTATGTCAATTTAGTTA+TGG | - | chr7_2:18229746-18229765 | Msa1051350:intron | 15.0% |
| !! | ATCTACAAAATAAAAAAAGG+GGG | + | chr7_2:18226996-18227015 | None:intergenic | 20.0% |
| !!! | ATGAATGATTGTTTTTTACT+TGG | - | chr7_2:18227564-18227583 | Msa1051350:intron | 20.0% |
| !! | TATAATTAACAAGAAGCAAA+AGG | + | chr7_2:18228496-18228515 | None:intergenic | 20.0% |
| !! | AATTAATATGTGTAGTTAGT+AGG | - | chr7_2:18228606-18228625 | Msa1051350:intron | 20.0% |
| !! | TATAAAAAGGGACAAAAATA+TGG | + | chr7_2:18229276-18229295 | None:intergenic | 20.0% |
| !! | CTAAGATACACAATATAAAA+AGG | + | chr7_2:18229289-18229308 | None:intergenic | 20.0% |
| !! | TAAGAGAAAATGAAAACATA+AGG | + | chr7_2:18229360-18229379 | None:intergenic | 20.0% |
| !!! | TATGTTTTCATTTTCTCTTA+TGG | - | chr7_2:18229360-18229379 | Msa1051350:intron | 20.0% |
| !!! | ATGTTTTCATTTTCTCTTAT+GGG | - | chr7_2:18229361-18229380 | Msa1051350:intron | 20.0% |
| !!! | AAAATTCTGAAAAATCAAAG+TGG | + | chr7_2:18229387-18229406 | None:intergenic | 20.0% |
| !!! | ACTTTGATTTTTCAGAATTT+TGG | - | chr7_2:18229386-18229405 | Msa1051350:intron | 20.0% |
| !! | GTACAATTCAATACAATTAT+TGG | + | chr7_2:18229806-18229825 | None:intergenic | 20.0% |
| !!! | TACCTTTCCTTTTTAATTAA+TGG | - | chr7_2:18230043-18230062 | Msa1051350:intron | 20.0% |
| !!! | ACCTTTCCTTTTTAATTAAT+GGG | - | chr7_2:18230044-18230063 | Msa1051350:intron | 20.0% |
| !! | AAAAGACCCATTAATTAAAA+AGG | + | chr7_2:18230053-18230072 | None:intergenic | 20.0% |
| ! | TCTTGGACAAATTAATGATT+TGG | - | chr7_2:18226926-18226945 | Msa1051350:intron | 25.0% |
| ! | CTTGGACAAATTAATGATTT+GGG | - | chr7_2:18226927-18226946 | Msa1051350:intron | 25.0% |
| !! | ATTATGATTCAATTTTGTCC+CGG | - | chr7_2:18227074-18227093 | Msa1051350:intron | 25.0% |
| !!! | TTTTCTTTGGAAATAGTATC+CGG | + | chr7_2:18227266-18227285 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTATTTGTGGTGA+TGG | - | chr7_2:18227357-18227376 | Msa1051350:intron | 25.0% |
| !! | TTAAAATTGTTTTCTCATCC+AGG | - | chr7_2:18227412-18227431 | Msa1051350:intron | 25.0% |
| !! | TAAAATTGTTTTCTCATCCA+GGG | - | chr7_2:18227413-18227432 | Msa1051350:intron | 25.0% |
| ! | CTTACAAGATCTTAGTTTAT+TGG | - | chr7_2:18227595-18227614 | Msa1051350:intron | 25.0% |
| ! | ATATTAATAACTCCAAAACC+AGG | + | chr7_2:18228322-18228341 | None:intergenic | 25.0% |
| ! | TTGTTGTGTAAAAACTATAG+AGG | - | chr7_2:18228372-18228391 | Msa1051350:intron | 25.0% |
| ! | AACTATAGAGGAAAAATTGT+AGG | - | chr7_2:18228384-18228403 | Msa1051350:intron | 25.0% |
| ! | GGTAAAAACATAAAATTGCT+TGG | - | chr7_2:18228438-18228457 | Msa1051350:intron | 25.0% |
| !!! | TGACATTTTATTTTTTGAGG+CGG | - | chr7_2:18228540-18228559 | Msa1051350:intron | 25.0% |
| ! | TGATAGGAATTTGAGTATTA+TGG | + | chr7_2:18228722-18228741 | None:intergenic | 25.0% |
| ! | TTATCAATTGGTATTATTGC+TGG | + | chr7_2:18228818-18228837 | None:intergenic | 25.0% |
| ! | GTGTTTGGATAATTATCAAT+TGG | + | chr7_2:18228830-18228849 | None:intergenic | 25.0% |
| ! | ATTAAGCAGTATGAAATGAT+TGG | + | chr7_2:18228918-18228937 | None:intergenic | 25.0% |
| ! | AATCATTTCATACTGCTTAA+TGG | - | chr7_2:18228917-18228936 | Msa1051350:intron | 25.0% |
| ! | ATCATTTCATACTGCTTAAT+GGG | - | chr7_2:18228918-18228937 | Msa1051350:intron | 25.0% |
| ! | TTTACATGAAATAAATCTGC+TGG | + | chr7_2:18228987-18229006 | None:intergenic | 25.0% |
| ! | GCAGATTTATTTCATGTAAA+TGG | - | chr7_2:18228987-18229006 | Msa1051350:intron | 25.0% |
| !!! | TACTACTGTTTCTGAAATTT+AGG | + | chr7_2:18229133-18229152 | None:intergenic | 25.0% |
| ! | AAATGGAACAAGAATTAACA+CGG | - | chr7_2:18229620-18229639 | Msa1051350:intron | 25.0% |
| !! | TTATTCATGCCTTATGTTTT+TGG | - | chr7_2:18229720-18229739 | Msa1051350:intron | 25.0% |
| ! | AATTTGGATTGTTTGAGAAT+AGG | + | chr7_2:18230018-18230037 | None:intergenic | 25.0% |
| ! | ACCCATTAATTAAAAAGGAA+AGG | + | chr7_2:18230048-18230067 | None:intergenic | 25.0% |
| ! | TTGTAGGATTAAATTTGAGA+AGG | - | chr7_2:18230161-18230180 | Msa1051350:CDS | 25.0% |
| CTTGTTAACATCTTCCAATT+CGG | + | chr7_2:18226748-18226767 | None:intergenic | 30.0% | |
| !! | ATTAATTTGTGTTACAGCTG+CGG | - | chr7_2:18226863-18226882 | Msa1051350:CDS | 30.0% |
| ACTGAAAATGATAAGCTTCT+TGG | - | chr7_2:18226909-18226928 | Msa1051350:intron | 30.0% | |
| ! | GAAATGAATTGACTTCAGTT+AGG | - | chr7_2:18226949-18226968 | Msa1051350:intron | 30.0% |
| TTGAACTTAAGATCTTAGAG+AGG | + | chr7_2:18227131-18227150 | None:intergenic | 30.0% | |
| !! | TTTGGTGTAACTGAATGTTT+TGG | - | chr7_2:18227308-18227327 | Msa1051350:intron | 30.0% |
| ! | TTGGTGTAACTGAATGTTTT+GGG | - | chr7_2:18227309-18227328 | Msa1051350:intron | 30.0% |
| TTCAACCAATTCATTGTCTT+TGG | + | chr7_2:18227442-18227461 | None:intergenic | 30.0% | |
| AAGATCTTAGTTTATTGGCA+TGG | - | chr7_2:18227600-18227619 | Msa1051350:intron | 30.0% | |
| !!! | TATTTTGGCAAGGCTATTTT+CGG | - | chr7_2:18227873-18227892 | Msa1051350:intron | 30.0% |
| CACATCTCATATATTTGACA+TGG | - | chr7_2:18228006-18228025 | Msa1051350:intron | 30.0% | |
| ! | AGAGGAAAAATTGTAGGTTT+TGG | - | chr7_2:18228390-18228409 | Msa1051350:intron | 30.0% |
| !!! | GACATTTTATTTTTTGAGGC+GGG | - | chr7_2:18228541-18228560 | Msa1051350:intron | 30.0% |
| !!! | ACATTTTATTTTTTGAGGCG+GGG | - | chr7_2:18228542-18228561 | Msa1051350:intron | 30.0% |
| ! | GTAGTATGAGATGCTTTTAA+GGG | + | chr7_2:18228678-18228697 | None:intergenic | 30.0% |
| ! | AGTAGTATGAGATGCTTTTA+AGG | + | chr7_2:18228679-18228698 | None:intergenic | 30.0% |
| GATAATTATCCAAACACTTG+AGG | - | chr7_2:18228833-18228852 | Msa1051350:CDS | 30.0% | |
| !!! | GATATCTAGCTTTTAATGGA+GGG | + | chr7_2:18228861-18228880 | None:intergenic | 30.0% |
| !!! | TGATATCTAGCTTTTAATGG+AGG | + | chr7_2:18228862-18228881 | None:intergenic | 30.0% |
| TCCATTAAAAGCTAGATATC+AGG | - | chr7_2:18228861-18228880 | Msa1051350:CDS | 30.0% | |
| CCATTAAAAGCTAGATATCA+GGG | - | chr7_2:18228862-18228881 | Msa1051350:CDS | 30.0% | |
| CATTAAAAGCTAGATATCAG+GGG | - | chr7_2:18228863-18228882 | Msa1051350:CDS | 30.0% | |
| ATTAAAAGCTAGATATCAGG+GGG | - | chr7_2:18228864-18228883 | Msa1051350:CDS | 30.0% | |
| TCATTTCATACTGCTTAATG+GGG | - | chr7_2:18228919-18228938 | Msa1051350:intron | 30.0% | |
| !!! | TTTCAGAATTTTGGCTTTGA+TGG | - | chr7_2:18229395-18229414 | Msa1051350:intron | 30.0% |
| !!! | ATTCACATTTTGGAATTAGC+AGG | + | chr7_2:18229494-18229513 | None:intergenic | 30.0% |
| TGAACTTAAAGATTCTTGCA+AGG | - | chr7_2:18229594-18229613 | Msa1051350:intron | 30.0% | |
| !! | GTTTGAAATGCCTTCATTTT+AGG | - | chr7_2:18229662-18229681 | Msa1051350:intron | 30.0% |
| TAAAGACACTCCTAAAATGA+AGG | + | chr7_2:18229675-18229694 | None:intergenic | 30.0% | |
| !! | TTAGGAGTGTCTTTACATAT+TGG | - | chr7_2:18229680-18229699 | Msa1051350:intron | 30.0% |
| GTCAATTTAGTTATGGATCA+TGG | - | chr7_2:18229753-18229772 | Msa1051350:intron | 30.0% | |
| AATTTAGTTATGGATCATGG+TGG | - | chr7_2:18229756-18229775 | Msa1051350:intron | 30.0% | |
| ! | TTTTCATCTTTTTGTGACAG+TGG | - | chr7_2:18229963-18229982 | Msa1051350:CDS | 30.0% |
| TCTCAAACAATCCAAATTCA+AGG | - | chr7_2:18230020-18230039 | Msa1051350:intron | 30.0% | |
| !!! | ATTTTAAGATTTTGGGTGTG+AGG | - | chr7_2:18230099-18230118 | Msa1051350:CDS | 30.0% |
| CGAATTGGAAGATGTTAACA+AGG | - | chr7_2:18226746-18226765 | Msa1051350:three_prime_UTR | 35.0% | |
| AAATTCCTCAAATTCGTCTC+TGG | - | chr7_2:18226780-18226799 | Msa1051350:exon | 35.0% | |
| CAAGCGTGTAAAATGAAGAA+TGG | + | chr7_2:18226808-18226827 | None:intergenic | 35.0% | |
| AAGAAGTGATAGATCACTTG+AGG | - | chr7_2:18226886-18226905 | Msa1051350:CDS | 35.0% | |
| ATGAATTGGTTGAACATCGA+AGG | - | chr7_2:18227448-18227467 | Msa1051350:intron | 35.0% | |
| ! | TGAACATCGAAGGCTTTTAT+TGG | - | chr7_2:18227458-18227477 | Msa1051350:intron | 35.0% |
| !!! | GAGACTCTCAATCTTTTTTG+TGG | - | chr7_2:18227498-18227517 | Msa1051350:intron | 35.0% |
| CTTATCCCGAAAAGTAGTTT+CGG | - | chr7_2:18227832-18227851 | Msa1051350:intron | 35.0% | |
| TTATCCCGAAAAGTAGTTTC+GGG | - | chr7_2:18227833-18227852 | Msa1051350:intron | 35.0% | |
| !! | ATTTTGGCAAGGCTATTTTC+GGG | - | chr7_2:18227874-18227893 | Msa1051350:intron | 35.0% |
| TGCATTCGGGAAATAGATTT+CGG | - | chr7_2:18227974-18227993 | Msa1051350:intron | 35.0% | |
| AATCAATGACCAGTTCATCA+GGG | + | chr7_2:18228218-18228237 | None:intergenic | 35.0% | |
| AAATCAATGACCAGTTCATC+AGG | + | chr7_2:18228219-18228238 | None:intergenic | 35.0% | |
| ! | ATGATGCATATTTCTGATCC+TGG | - | chr7_2:18228301-18228320 | Msa1051350:intron | 35.0% |
| !! | CATATTTCTGATCCTGGTTT+TGG | - | chr7_2:18228307-18228326 | Msa1051350:intron | 35.0% |
| ACAAAGAGATAGCCACAAAA+AGG | + | chr7_2:18228416-18228435 | None:intergenic | 35.0% | |
| TTTGTGGCTATCTCTTTGTT+TGG | - | chr7_2:18228417-18228436 | Msa1051350:intron | 35.0% | |
| !! | TGTCTAGATAGAAGTACTAC+TGG | - | chr7_2:18228629-18228648 | Msa1051350:intron | 35.0% |
| !! | TATGAGATGCTTTTAAGGGA+GGG | + | chr7_2:18228674-18228693 | None:intergenic | 35.0% |
| ATACTACTCAATGTGAGACT+TGG | - | chr7_2:18228691-18228710 | Msa1051350:CDS | 35.0% | |
| TACTACTCAATGTGAGACTT+GGG | - | chr7_2:18228692-18228711 | Msa1051350:intron | 35.0% | |
| GCTTTACCTATTTGAGCTAT+CGG | - | chr7_2:18228789-18228808 | Msa1051350:intron | 35.0% | |
| !!! | CCCTGATATCTAGCTTTTAA+TGG | + | chr7_2:18228865-18228884 | None:intergenic | 35.0% |
| TTAAAAGCTAGATATCAGGG+GGG | - | chr7_2:18228865-18228884 | Msa1051350:CDS | 35.0% | |
| AAGCAGTATGAAATGATTGG+TGG | + | chr7_2:18228915-18228934 | None:intergenic | 35.0% | |
| CATTTCATACTGCTTAATGG+GGG | - | chr7_2:18228920-18228939 | Msa1051350:intron | 35.0% | |
| ! | CAAGTTTTCATGCTTGATGA+GGG | + | chr7_2:18229192-18229211 | None:intergenic | 35.0% |
| !!! | GAAAACTTGCTGGTTTTGTA+AGG | - | chr7_2:18229203-18229222 | Msa1051350:intron | 35.0% |
| !!! | TTTTGGCTTTGATGGAAAAC+TGG | - | chr7_2:18229403-18229422 | Msa1051350:intron | 35.0% |
| AACACTAAAATGACAGTTGC+TGG | - | chr7_2:18229459-18229478 | Msa1051350:intron | 35.0% | |
| AGATTCTTGCAAGGTAGAAA+TGG | - | chr7_2:18229603-18229622 | Msa1051350:intron | 35.0% | |
| TTTACGAACAGAAGTGAGTA+GGG | + | chr7_2:18229867-18229886 | None:intergenic | 35.0% | |
| !! | AAGGAAAGGTACCTTGAATT+TGG | + | chr7_2:18230034-18230053 | None:intergenic | 35.0% |
| AAACCCGACAGTCAGAAAAT+TGG | - | chr7_2:18226717-18226736 | Msa1051350:three_prime_UTR | 40.0% | |
| AACCCGACAGTCAGAAAATT+GGG | - | chr7_2:18226718-18226737 | Msa1051350:three_prime_UTR | 40.0% | |
| ! | TTCCCAATTTTCTGACTGTC+GGG | + | chr7_2:18226723-18226742 | None:intergenic | 40.0% |
| ! | GTTCCCAATTTTCTGACTGT+CGG | + | chr7_2:18226724-18226743 | None:intergenic | 40.0% |
| GAAAATTGGGAACTCCGAAT+TGG | - | chr7_2:18226731-18226750 | Msa1051350:three_prime_UTR | 40.0% | |
| ! | ATGATTCAATTTTGTCCCGG+TGG | - | chr7_2:18227077-18227096 | Msa1051350:intron | 40.0% |
| GGTTGCCAAAGACAATGAAT+TGG | - | chr7_2:18227434-18227453 | Msa1051350:intron | 40.0% | |
| ! | ACATCGAAGGCTTTTATTGG+AGG | - | chr7_2:18227461-18227480 | Msa1051350:intron | 40.0% |
| !! | TGCATCCCGAAACTACTTTT+CGG | + | chr7_2:18227841-18227860 | None:intergenic | 40.0% |
| CTTGCCAAAATACACATGTC+GGG | + | chr7_2:18227865-18227884 | None:intergenic | 40.0% | |
| CCTTGCCAAAATACACATGT+CGG | + | chr7_2:18227866-18227885 | None:intergenic | 40.0% | |
| GGGTGCTTTGTATGGAAATA+TGG | + | chr7_2:18227904-18227923 | None:intergenic | 40.0% | |
| ! | AATTCATGGGGTGCTTTGTA+TGG | + | chr7_2:18227912-18227931 | None:intergenic | 40.0% |
| !! | TGATGGGTGGATTGTTGTTT+CGG | - | chr7_2:18227949-18227968 | Msa1051350:intron | 40.0% |
| !! | TTGTTGTTTCGGGATGCATT+CGG | - | chr7_2:18227960-18227979 | Msa1051350:intron | 40.0% |
| GCATTCGGGAAATAGATTTC+GGG | - | chr7_2:18227975-18227994 | Msa1051350:intron | 40.0% | |
| TATTTGACATGGCAGATAGC+TGG | - | chr7_2:18228017-18228036 | Msa1051350:intron | 40.0% | |
| GCGAAGAAAGTCTATCACTT+TGG | + | chr7_2:18228057-18228076 | None:intergenic | 40.0% | |
| CTATTTACTCTACCCTCATC+TGG | - | chr7_2:18228112-18228131 | Msa1051350:intron | 40.0% | |
| !! | TGTAGGTTTTGGCCTTTTTG+TGG | - | chr7_2:18228401-18228420 | Msa1051350:intron | 40.0% |
| !!! | TTATTTTTTGAGGCGGGGAT+TGG | - | chr7_2:18228547-18228566 | Msa1051350:intron | 40.0% |
| !! | GTATGAGATGCTTTTAAGGG+AGG | + | chr7_2:18228675-18228694 | None:intergenic | 40.0% |
| TAAAAGCTAGATATCAGGGG+GGG | - | chr7_2:18228866-18228885 | Msa1051350:CDS | 40.0% | |
| ATACTGCTTAATGGGGGAAT+TGG | - | chr7_2:18228926-18228945 | Msa1051350:intron | 40.0% | |
| TTGGACAACCTATAACACCA+AGG | - | chr7_2:18228945-18228964 | Msa1051350:intron | 40.0% | |
| ACAGTAGTAGAACTGAACCA+CGG | - | chr7_2:18229144-18229163 | Msa1051350:intron | 40.0% | |
| TCATGCTTGATGAGGGAAAT+TGG | + | chr7_2:18229185-18229204 | None:intergenic | 40.0% | |
| ! | GCAAGTTTTCATGCTTGATG+AGG | + | chr7_2:18229193-18229212 | None:intergenic | 40.0% |
| CATCAAGCATGAAAACTTGC+TGG | - | chr7_2:18229193-18229212 | Msa1051350:intron | 40.0% | |
| ACATCAGGCTTGTCACATAT+GGG | + | chr7_2:18229253-18229272 | None:intergenic | 40.0% | |
| GGGACAAAAATATGGACATC+AGG | + | chr7_2:18229268-18229287 | None:intergenic | 40.0% | |
| TGTCAACTACGCTTGTTCTA+TGG | - | chr7_2:18229427-18229446 | Msa1051350:intron | 40.0% | |
| CTTTACGAACAGAAGTGAGT+AGG | + | chr7_2:18229868-18229887 | None:intergenic | 40.0% | |
| CTACTCACTTCTGTTCGTAA+AGG | - | chr7_2:18229866-18229885 | Msa1051350:intron | 40.0% | |
| !! | TTTGAGAATAGGAGCATCAC+CGG | + | chr7_2:18230007-18230026 | None:intergenic | 40.0% |
| CTACAACATTCAGCTTCTGA+AGG | + | chr7_2:18230147-18230166 | None:intergenic | 40.0% | |
| CTTCAGAAGCTGAATGTTGT+AGG | - | chr7_2:18230145-18230164 | Msa1051350:CDS | 40.0% | |
| TGGTACCAGAGACGAATTTG+AGG | + | chr7_2:18226788-18226807 | None:intergenic | 45.0% | |
| CGTGCTAACAATGCTTGTGT+TGG | - | chr7_2:18227151-18227170 | Msa1051350:intron | 45.0% | |
| !! | AGCTTTACGCCGACTTCAAT+TGG | - | chr7_2:18227188-18227207 | Msa1051350:intron | 45.0% |
| AATCCCACCATCTACTAGCA+GGG | + | chr7_2:18227216-18227235 | None:intergenic | 45.0% | |
| TTCATTGTCTTTGGCAACCC+TGG | + | chr7_2:18227433-18227452 | None:intergenic | 45.0% | |
| !! | GCATCCCGAAACTACTTTTC+GGG | + | chr7_2:18227840-18227859 | None:intergenic | 45.0% |
| ! | GCATCCCGACATGTGTATTT+TGG | - | chr7_2:18227858-18227877 | Msa1051350:intron | 45.0% |
| !!! | CCGACATGTGTATTTTGGCA+AGG | - | chr7_2:18227863-18227882 | Msa1051350:intron | 45.0% |
| CAATCCACCCATCAAAAAGC+TGG | + | chr7_2:18227943-18227962 | None:intergenic | 45.0% | |
| !! | GATGGGTGGATTGTTGTTTC+GGG | - | chr7_2:18227950-18227969 | Msa1051350:intron | 45.0% |
| !! | TGTTGTTTCGGGATGCATTC+GGG | - | chr7_2:18227961-18227980 | Msa1051350:intron | 45.0% |
| TGTTTACCAATGACTCCCTG+TGG | + | chr7_2:18228088-18228107 | None:intergenic | 45.0% | |
| !! | ACCCTCATCTGGCTCTTTAA+AGG | - | chr7_2:18228123-18228142 | Msa1051350:intron | 45.0% |
| ! | GCCTTTAAAGAGCCAGATGA+GGG | + | chr7_2:18228127-18228146 | None:intergenic | 45.0% |
| ! | AGCCTTTAAAGAGCCAGATG+AGG | + | chr7_2:18228128-18228147 | None:intergenic | 45.0% |
| !! | TTCATCAGGGTTCGGTGAAA+AGG | + | chr7_2:18228205-18228224 | None:intergenic | 45.0% |
| ATGACCAGTTCATCAGGGTT+CGG | + | chr7_2:18228213-18228232 | None:intergenic | 45.0% | |
| GGAGGGTTCATATGAGCTAA+TGG | + | chr7_2:18228657-18228676 | None:intergenic | 45.0% | |
| TGGTTGCCGATAGCTCAAAT+AGG | + | chr7_2:18228798-18228817 | None:intergenic | 45.0% | |
| TATCAGGGGGGGAATAACTA+AGG | - | chr7_2:18228877-18228896 | Msa1051350:CDS | 45.0% | |
| !! | GATAGGGACCTTGGTGTTAT+AGG | + | chr7_2:18228956-18228975 | None:intergenic | 45.0% |
| !! | TCTGCTGGAGCATTGTGATA+GGG | + | chr7_2:18228972-18228991 | None:intergenic | 45.0% |
| !! | ATCTGCTGGAGCATTGTGAT+AGG | + | chr7_2:18228973-18228992 | None:intergenic | 45.0% |
| GGATAGACAAAAAGCAACCG+TGG | + | chr7_2:18229164-18229183 | None:intergenic | 45.0% | |
| GACATCAGGCTTGTCACATA+TGG | + | chr7_2:18229254-18229273 | None:intergenic | 45.0% | |
| ACTACGCTTGTTCTATGGCA+TGG | - | chr7_2:18229432-18229451 | Msa1051350:intron | 45.0% | |
| CTACGCTTGTTCTATGGCAT+GGG | - | chr7_2:18229433-18229452 | Msa1051350:intron | 45.0% | |
| TACGCTTGTTCTATGGCATG+GGG | - | chr7_2:18229434-18229453 | Msa1051350:intron | 45.0% | |
| CGGTGTTCTTCACAATCTGT+TGG | - | chr7_2:18229640-18229659 | Msa1051350:intron | 45.0% | |
| !!! | ATTAAAAATTTTAAGATTTT+GGG | - | chr7_2:18230092-18230111 | Msa1051350:CDS | 5.0% |
| AGTCCCAAGTCATACACCAC+CGG | + | chr7_2:18227096-18227115 | None:intergenic | 50.0% | |
| AGCAGGGGACCAATTGAAGT+CGG | + | chr7_2:18227200-18227219 | None:intergenic | 50.0% | |
| ATTGGTCCCCTGCTAGTAGA+TGG | - | chr7_2:18227206-18227225 | Msa1051350:intron | 50.0% | |
| ATCCCACCATCTACTAGCAG+GGG | + | chr7_2:18227215-18227234 | None:intergenic | 50.0% | |
| CAATCCCACCATCTACTAGC+AGG | + | chr7_2:18227217-18227236 | None:intergenic | 50.0% | |
| !! | CTGCTAGTAGATGGTGGGAT+TGG | - | chr7_2:18227215-18227234 | Msa1051350:intron | 50.0% |
| CCAAAGACCACCTAATCCGA+GGG | + | chr7_2:18227242-18227261 | None:intergenic | 50.0% | |
| ! | CCTCGGATTAGGTGGTCTTT+GGG | - | chr7_2:18227240-18227259 | Msa1051350:intron | 50.0% |
| TTCACCGAACCCTGATGAAC+TGG | - | chr7_2:18228206-18228225 | Msa1051350:intron | 50.0% | |
| !! | CTCAAGAGCGGTGCTATGAT+AGG | + | chr7_2:18228738-18228757 | None:intergenic | 50.0% |
| TGGAGGGTTCCTCAAGTGTT+TGG | + | chr7_2:18228845-18228864 | None:intergenic | 50.0% | |
| ! | GAGCATTGTGATAGGGACCT+TGG | + | chr7_2:18228965-18228984 | None:intergenic | 50.0% |
| CAGGCTTGTCACATATGGGA+TGG | + | chr7_2:18229249-18229268 | None:intergenic | 50.0% | |
| TGAGTTTGTGCTGAAGCGTG+TGG | + | chr7_2:18229542-18229561 | None:intergenic | 50.0% | |
| GTTGTTCATCTCAGAGCCAC+CGG | - | chr7_2:18229985-18230004 | Msa1051350:CDS | 50.0% | |
| TGTCCCGGTGGTGTATGACT+TGG | - | chr7_2:18227089-18227108 | Msa1051350:intron | 55.0% | |
| GTCCCGGTGGTGTATGACTT+GGG | - | chr7_2:18227090-18227109 | Msa1051350:intron | 55.0% | |
| GTCCCAAGTCATACACCACC+GGG | + | chr7_2:18227095-18227114 | None:intergenic | 55.0% | |
| GTCCCCTGCTAGTAGATGGT+GGG | - | chr7_2:18227210-18227229 | Msa1051350:intron | 55.0% | |
| !! | AGATGGTGGGATTGGTCCCT+CGG | - | chr7_2:18227223-18227242 | Msa1051350:intron | 55.0% |
| !! | TGGGATTGGTCCCTCGGATT+AGG | - | chr7_2:18227229-18227248 | Msa1051350:intron | 55.0% |
| ! | GATTGGTCCCTCGGATTAGG+TGG | - | chr7_2:18227232-18227251 | Msa1051350:intron | 55.0% |
| ! | CCCTCGGATTAGGTGGTCTT+TGG | - | chr7_2:18227239-18227258 | Msa1051350:intron | 55.0% |
| CCCAAAGACCACCTAATCCG+AGG | + | chr7_2:18227243-18227262 | None:intergenic | 55.0% | |
| GGATTAGGTGGTCTTTGGGC+CGG | - | chr7_2:18227244-18227263 | Msa1051350:intron | 55.0% | |
| CATAGCCCAACACGCACACA+CGG | + | chr7_2:18227386-18227405 | None:intergenic | 55.0% | |
| AAGCACCCCATGAATTCCGC+TGG | - | chr7_2:18227916-18227935 | Msa1051350:intron | 55.0% | |
| AGCACCCCATGAATTCCGCT+GGG | - | chr7_2:18227917-18227936 | Msa1051350:intron | 55.0% | |
| CCATCAAAAAGCTGGCCCAG+CGG | + | chr7_2:18227935-18227954 | None:intergenic | 55.0% | |
| ! | CGCTGGGCCAGCTTTTTGAT+GGG | - | chr7_2:18227933-18227952 | Msa1051350:intron | 55.0% |
| ! | TGGGCCAGCTTTTTGATGGG+TGG | - | chr7_2:18227936-18227955 | Msa1051350:intron | 55.0% |
| TTCTTCGCAGACAGCTCCAC+AGG | - | chr7_2:18228069-18228088 | Msa1051350:intron | 55.0% | |
| TCTTCGCAGACAGCTCCACA+GGG | - | chr7_2:18228070-18228089 | Msa1051350:intron | 55.0% | |
| ACAGCTCCACAGGGAGTCAT+TGG | - | chr7_2:18228079-18228098 | Msa1051350:intron | 55.0% | |
| ! | CGGGGATTGGTAGAGTCGTA+TGG | - | chr7_2:18228560-18228579 | Msa1051350:intron | 55.0% |
| GGGATGTCAGCTCTCAAGAG+CGG | + | chr7_2:18228750-18228769 | None:intergenic | 55.0% | |
| GCTCTTGAGAGCTGACATCC+CGG | - | chr7_2:18228749-18228768 | Msa1051350:intron | 55.0% | |
| !! | GAGAATAGGAGCATCACCGG+TGG | + | chr7_2:18230004-18230023 | None:intergenic | 55.0% |
| GGTCCCCTGCTAGTAGATGG+TGG | - | chr7_2:18227209-18227228 | Msa1051350:intron | 60.0% | |
| TGGTTGCCGTGTGTGCGTGT+TGG | - | chr7_2:18227377-18227396 | Msa1051350:intron | 60.0% | |
| GGTTGCCGTGTGTGCGTGTT+GGG | - | chr7_2:18227378-18227397 | Msa1051350:intron | 60.0% | |
| CGTGTGTGCGTGTTGGGCTA+TGG | - | chr7_2:18227384-18227403 | Msa1051350:intron | 60.0% | |
| CTGGCCCAGCGGAATTCATG+GGG | + | chr7_2:18227924-18227943 | None:intergenic | 60.0% | |
| GCTGGCCCAGCGGAATTCAT+GGG | + | chr7_2:18227925-18227944 | None:intergenic | 60.0% | |
| AGCTGGCCCAGCGGAATTCA+TGG | + | chr7_2:18227926-18227945 | None:intergenic | 60.0% | |
| ! | CCGCTGGGCCAGCTTTTTGA+TGG | - | chr7_2:18227932-18227951 | Msa1051350:intron | 60.0% |
| CTTGAGAGCTGACATCCCGG+TGG | - | chr7_2:18228752-18228771 | Msa1051350:intron | 60.0% | |
| CGCTGTAGTGTGCAACCACC+GGG | + | chr7_2:18228770-18228789 | None:intergenic | 60.0% | |
| GCGCTGTAGTGTGCAACCAC+CGG | + | chr7_2:18228771-18228790 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 18226699 | 18230194 | 18226699 | ID=Msa1051350;Name=Msa1051350 |
| chr7_2 | mRNA | 18226699 | 18230194 | 18226699 | ID=Msa1051350-mRNA-1;Parent=Msa1051350;Name=Msa1051350-mRNA-1;_AED=0.44;_eAED=0.46;_QI=0|0.2|0.16|0.66|0.4|0.5|6|98|171 |
| chr7_2 | exon | 18226699 | 18226910 | 18226699 | ID=Msa1051350-mRNA-1:exon:4096;Parent=Msa1051350-mRNA-1 |
| chr7_2 | exon | 18227006 | 18227044 | 18227006 | ID=Msa1051350-mRNA-1:exon:4095;Parent=Msa1051350-mRNA-1 |
| chr7_2 | exon | 18228648 | 18228710 | 18228648 | ID=Msa1051350-mRNA-1:exon:4094;Parent=Msa1051350-mRNA-1 |
| chr7_2 | exon | 18228793 | 18228903 | 18228793 | ID=Msa1051350-mRNA-1:exon:4093;Parent=Msa1051350-mRNA-1 |
| chr7_2 | exon | 18229928 | 18230013 | 18229928 | ID=Msa1051350-mRNA-1:exon:4092;Parent=Msa1051350-mRNA-1 |
| chr7_2 | exon | 18230092 | 18230194 | 18230092 | ID=Msa1051350-mRNA-1:exon:4091;Parent=Msa1051350-mRNA-1 |
| chr7_2 | CDS | 18230092 | 18230194 | 18230092 | ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1 |
| chr7_2 | CDS | 18229928 | 18230013 | 18229928 | ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1 |
| chr7_2 | CDS | 18228793 | 18228903 | 18228793 | ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1 |
| chr7_2 | CDS | 18228648 | 18228710 | 18228648 | ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1 |
| chr7_2 | CDS | 18227006 | 18227044 | 18227006 | ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1 |
| chr7_2 | CDS | 18226797 | 18226910 | 18226797 | ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1 |
| chr7_2 | three_prime_UTR | 18226699 | 18226796 | 18226699 | ID=Msa1051350-mRNA-1:three_prime_utr;Parent=Msa1051350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
