AlfalfaGEDB | Msa1051350

M. sativa cultivar zhongmu-4 / Msa1051350

KEGG: K08336
GO: GO:0000045 GO:0000407 GO:0000422 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006497 GO:0006501 GO:0006807 GO:0006914 GO:0006996 GO:0007005 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009059 GO:0009987 GO:0016020 GO:0016043 GO:0016236 GO:0016740 GO:0018410 GO:0019538 GO:0019776 GO:0022411 GO:0022607 GO:0032991 GO:0034045 GO:0034274 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043412 GO:0043687 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044804 GO:0061726 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0098805 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1903008 GO:1905037 GO:1990234
PFAM: PF04110.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051350	XP_010270804.1	58.621	87	35	1	35	121	8	93	9.59e-23	97.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051350	sp\|Q1SF86\|ATG12_MEDTR	80.702	57	11	0	65	121	20	76	9.48e-25	94.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051350	A0A1U8AW25	58.621	87	35	1	35	121	8	93	4.58e-23	97.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0045790	Msa1051350	0.800806	1.212428e-48	-8.615850e-47
Msa0046160	Msa1051350	0.802459	5.553331e-49	-8.615850e-47
Msa0121380	Msa1051350	0.803093	4.108928e-49	-8.615850e-47
Msa0197660	Msa1051350	0.833806	4.314897e-56	-8.615850e-47
Msa0223260	Msa1051350	0.801656	8.123040e-49	-8.615850e-47
Msa0239800	Msa1051350	0.834315	3.218830e-56	-8.615850e-47
Msa0277820	Msa1051350	0.813115	3.013158e-51	-8.615850e-47
Msa0317510	Msa1051350	0.827252	1.734028e-54	-8.615850e-47
Msa0484780	Msa1051350	0.803483	3.412629e-49	-8.615850e-47
Msa0512750	Msa1051350	0.816147	6.423635e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051350	MtrunA17_Chr8g0343841	80.702	57	11	65	121	20	76	6.98e-26	94.7
Msa1051350	MtrunA17_Chr7g0245921	97.959	49	1	16	64	21	69	3.74e-25	98.2
Msa1051350	MtrunA17_Chr8g0359191	93.878	49	3	16	64	21	69	8.16e-24	94.7

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051350	AT3G13970.4	76.471	51	12	76	126	30	80	6.56e-23	87.4
Msa1051350	AT1G54210.3	73.684	57	15	65	121	21	77	2.10e-22	86.3
Msa1051350	AT1G54210.1	73.684	57	15	65	121	21	77	2.10e-22	86.3
Msa1051350	AT3G13970.1	80.435	46	9	76	121	30	75	4.27e-21	82.8

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Find 38 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACCCATTAATTAAAA+AGG	0.285555	7_2:+18226821	None:intergenic
AAACCCGACAGTCAGAAAAT+TGG	0.284830	7_2:-18230154	Msa1051350:CDS
AAATCAATGACCAGTTCATC+AGG	0.379567	7_2:+18228655	None:intergenic
AAATTCCTCAAATTCGTCTC+TGG	0.492306	7_2:-18230091	Msa1051350:intron
AACCCGACAGTCAGAAAATT+GGG	0.455322	7_2:-18230153	Msa1051350:CDS
AAGAAGTGATAGATCACTTG+AGG	0.612613	7_2:-18229985	Msa1051350:CDS
AAGGAAAGGTACCTTGAATT+TGG	0.170309	7_2:+18226840	None:intergenic
AATCAATGACCAGTTCATCA+GGG	0.626890	7_2:+18228656	None:intergenic
AATTTGGATTGTTTGAGAAT+AGG	0.414865	7_2:+18226856	None:intergenic
ACAGCTCCACAGGGAGTCAT+TGG	0.444257	7_2:-18228792	Msa1051350:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTGTTAACATCTTCCAATT+CGG	+	chr7_2:18226748-18226767	None:intergenic	30.0%
ACTGAAAATGATAAGCTTCT+TGG	-	chr7_2:18226909-18226928	Msa1051350:intron	30.0%
TTGAACTTAAGATCTTAGAG+AGG	+	chr7_2:18227131-18227150	None:intergenic	30.0%
TTCAACCAATTCATTGTCTT+TGG	+	chr7_2:18227442-18227461	None:intergenic	30.0%
AAGATCTTAGTTTATTGGCA+TGG	-	chr7_2:18227600-18227619	Msa1051350:intron	30.0%
CACATCTCATATATTTGACA+TGG	-	chr7_2:18228006-18228025	Msa1051350:intron	30.0%
GATAATTATCCAAACACTTG+AGG	-	chr7_2:18228833-18228852	Msa1051350:CDS	30.0%
TCCATTAAAAGCTAGATATC+AGG	-	chr7_2:18228861-18228880	Msa1051350:CDS	30.0%
CCATTAAAAGCTAGATATCA+GGG	-	chr7_2:18228862-18228881	Msa1051350:CDS	30.0%
CATTAAAAGCTAGATATCAG+GGG	-	chr7_2:18228863-18228882	Msa1051350:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	18226699	18230194	18226699	ID=Msa1051350;Name=Msa1051350
chr7_2	mRNA	18226699	18230194	18226699	ID=Msa1051350-mRNA-1;Parent=Msa1051350;Name=Msa1051350-mRNA-1;_AED=0.44;_eAED=0.46;_QI=0\|0.2\|0.16\|0.66\|0.4\|0.5\|6\|98\|171
chr7_2	exon	18226699	18226910	18226699	ID=Msa1051350-mRNA-1:exon:4096;Parent=Msa1051350-mRNA-1
chr7_2	exon	18227006	18227044	18227006	ID=Msa1051350-mRNA-1:exon:4095;Parent=Msa1051350-mRNA-1
chr7_2	exon	18228648	18228710	18228648	ID=Msa1051350-mRNA-1:exon:4094;Parent=Msa1051350-mRNA-1
chr7_2	exon	18228793	18228903	18228793	ID=Msa1051350-mRNA-1:exon:4093;Parent=Msa1051350-mRNA-1
chr7_2	exon	18229928	18230013	18229928	ID=Msa1051350-mRNA-1:exon:4092;Parent=Msa1051350-mRNA-1
chr7_2	exon	18230092	18230194	18230092	ID=Msa1051350-mRNA-1:exon:4091;Parent=Msa1051350-mRNA-1
chr7_2	CDS	18230092	18230194	18230092	ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1
chr7_2	CDS	18229928	18230013	18229928	ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1
chr7_2	CDS	18228793	18228903	18228793	ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1
chr7_2	CDS	18228648	18228710	18228648	ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1
chr7_2	CDS	18227006	18227044	18227006	ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1
chr7_2	CDS	18226797	18226910	18226797	ID=Msa1051350-mRNA-1:cds;Parent=Msa1051350-mRNA-1
chr7_2	three_prime_UTR	18226699	18226796	18226699	ID=Msa1051350-mRNA-1:three_prime_utr;Parent=Msa1051350-mRNA-1

Gene Sequence

>Msa1051350

ATGGAGAAGGAAGAGAACAAACCCGACAGTCAGAAAATTGGGAACTCCGAATTGGAAGATGTTAACAAGGAACAAGAACTCAAATTCCTCAAATTCGTCTCTGCTGCGGAAGAAGTGATAGATCACTTGAGGACTGAAAATGATAAGCTTCTTGGACAAATTAATGATTTGGGAAATGAATTGACTTCAATTTCGGGAAATATAGCACATCTCATATATTTGACATGGCAGATAGCTGGAACTGATAAATTTGCCAAAGTGATAGACTTTCTTCGCAGACAGCTCCACAGGGAGTCATTGTTTGTATATGTCAACAGTGCCTTTTCACCGAACCCTGATGAACTGGTCATTGATTTGTATAATCTTGATATATTTGTGCCCTACTCACTTCTGTTCGTAAAGTGGTTGTTCATCTCAGAGCCACCGGTGATGCTCCTATTCTCAAACAATCCAAATTCAAGGTACCTTTCCTTTTTAATTAATGGGTCTTTTTTATTTCTTCACAATTCGCATTAA

Protein sequence

>Msa1051350

MEKEENKPDSQKIGNSELEDVNKEQELKFLKFVSAAEEVIDHLRTENDKLLGQINDLGNELTSISGNIAHLIYLTWQIAGTDKFAKVIDFLRRQLHRESLFVYVNSAFSPNPDELVIDLYNLDIFVPYSLLFVKWLFISEPPVMLLFSNNPNSRYLSFLINGSFLFLHNSH*