AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1100630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100630 MtrunA17_Chr4g0054891 60.847 590 160 7 2 532 85 662 0.0 683
Msa1100630 MtrunA17_Chr7g0217461 91.640 311 21 1 5 315 2 307 0.0 598
Msa1100630 MtrunA17_Chr7g0217461 96.137 233 9 0 298 530 351 583 3.28e-146 433
Msa1100630 MtrunA17_Chr5g0400371 54.315 591 201 10 2 531 87 669 0.0 590
Msa1100630 MtrunA17_Chr1g0213711 53.242 586 203 8 1 531 1 570 0.0 589
Msa1100630 MtrunA17_Chr7g0214461 54.482 569 192 6 21 535 72 627 0.0 585
Msa1100630 MtrunA17_Chr7g0218851 55.052 574 182 8 21 531 40 600 0.0 571
Msa1100630 MtrunA17_Chr4g0011041 43.652 575 256 6 4 516 11 579 4.41e-155 455
Msa1100630 MtrunA17_Chr7g0241741 41.958 572 268 6 8 523 3 566 2.81e-144 427
Msa1100630 MtrunA17_Chr3g0104011 40.592 574 277 10 7 523 2 568 3.80e-138 411
Msa1100630 MtrunA17_Chr8g0375291 40.675 563 273 7 6 512 19 576 1.27e-136 408
Msa1100630 MtrunA17_Chr4g0005901 40.559 572 274 9 5 519 10 572 3.76e-135 404
Msa1100630 MtrunA17_Chr8g0375311 37.895 570 293 7 6 519 19 583 6.07e-127 383
Msa1100630 MtrunA17_Chr3g0142101 35.445 584 300 9 6 533 12 574 2.36e-119 363
Msa1100630 MtrunA17_Chr8g0375361 38.957 575 282 8 5 519 17 582 2.27e-118 361
Msa1100630 MtrunA17_Chr7g0261771 33.560 587 329 7 2 536 6 583 1.44e-117 360
Msa1100630 MtrunA17_Chr7g0261811 34.286 560 313 6 10 517 10 566 4.07e-116 356
Msa1100630 MtrunA17_Chr1g0187241 34.146 574 323 6 10 531 9 579 7.60e-116 355
Msa1100630 MtrunA17_Chr3g0142091 35.035 568 303 6 3 516 2 557 7.13e-115 352
Msa1100630 MtrunA17_Chr7g0261791 34.851 571 316 7 13 530 15 582 8.28e-115 352
Msa1100630 MtrunA17_Chr7g0261881 33.214 557 317 6 13 517 13 566 4.49e-114 350
Msa1100630 MtrunA17_Chr1g0166791 34.111 557 312 5 13 517 10 563 1.21e-112 347
Msa1100630 MtrunA17_Chr8g0375351 36.250 560 296 8 13 516 26 580 2.35e-109 338
Msa1100630 MtrunA17_Chr8g0375341 35.524 563 302 8 13 519 26 583 8.25e-109 336
Msa1100630 MtrunA17_Chr7g0261851 33.684 570 323 7 13 530 14 580 2.23e-108 336
Msa1100630 MtrunA17_Chr1g0166711 33.094 556 318 5 13 517 11 563 1.06e-106 331
Msa1100630 MtrunA17_Chr1g0166741 32.528 538 301 5 13 498 13 540 3.85e-102 319
Msa1100630 MtrunA17_Chr3g0077151 35.624 553 298 8 8 519 9 544 1.38e-101 317
Msa1100630 MtrunA17_Chr3g0112671 32.069 580 322 7 8 532 14 576 1.44e-100 315
Msa1100630 MtrunA17_Chr5g0399071 34.636 563 306 5 13 517 11 569 5.64e-100 313
Msa1100630 MtrunA17_Chr8g0375321 33.217 572 320 10 1 516 12 577 1.36e-99 312
Msa1100630 MtrunA17_Chr7g0240381 31.729 561 313 6 15 521 17 561 2.99e-98 309
Msa1100630 MtrunA17_Chr3g0114501 32.628 567 316 8 10 519 5 562 7.46e-98 308
Msa1100630 MtrunA17_Chr1g0166771 33.267 505 275 5 48 500 12 506 2.38e-97 305
Msa1100630 MtrunA17_Chr4g0014841 35.009 557 307 9 3 517 5 548 6.09e-97 305
Msa1100630 MtrunA17_Chr4g0014871 34.358 553 297 10 14 517 17 552 6.10e-97 305
Msa1100630 MtrunA17_Chr8g0375331 33.393 563 314 8 13 519 10 567 8.32e-97 305
Msa1100630 MtrunA17_Chr4g0014791 34.470 557 310 8 3 517 5 548 6.44e-96 302
Msa1100630 MtrunA17_Chr5g0422881 32.394 568 324 8 26 536 19 583 1.40e-94 300
Msa1100630 MtrunA17_Chr4g0014801 34.039 567 301 10 3 517 5 550 1.34e-93 296
Msa1100630 MtrunA17_Chr4g0008651 32.149 563 318 7 15 523 22 574 1.50e-93 297
Msa1100630 MtrunA17_Chr4g0014781 34.281 563 305 11 3 517 5 550 9.31e-92 291
Msa1100630 MtrunA17_Chr5g0439381 33.686 567 310 8 15 530 16 567 1.68e-91 291
Msa1100630 MtrunA17_Chr3g0112611 29.443 574 345 6 15 535 20 586 1.09e-89 287
Msa1100630 MtrunA17_Chr4g0063591 34.669 574 306 11 1 519 1 560 1.51e-88 283
Msa1100630 MtrunA17_Chr2g0276751 32.240 549 316 8 14 517 25 562 1.85e-84 273
Msa1100630 MtrunA17_Chr4g0011471 50.360 278 133 1 41 318 30 302 7.05e-84 271
Msa1100630 MtrunA17_Chr4g0011471 45.161 279 131 6 242 518 301 559 2.74e-64 219
Msa1100630 MtrunA17_Chr7g0261661 31.858 452 253 6 118 517 4 452 4.57e-81 262
Msa1100630 MtrunA17_Chr7g0214731 30.458 568 332 6 29 533 63 630 6.10e-80 263
Msa1100630 MtrunA17_Chr1g0193391 28.169 568 340 7 15 528 3 556 5.51e-78 256
Msa1100630 MtrunA17_Chr1g0166731 32.527 455 253 5 114 517 9 460 3.72e-77 251
Msa1100630 MtrunA17_Chr4g0069581 31.429 525 296 7 45 517 4 516 3.48e-75 248
Msa1100630 MtrunA17_Chr7g0255621 28.822 569 336 10 27 535 20 579 9.37e-74 245
Msa1100630 MtrunA17_Chr4g0014861 36.211 417 219 8 146 517 13 427 1.50e-73 240
Msa1100630 MtrunA17_Chr7g0255611 28.546 557 331 11 18 515 22 570 5.58e-73 243
Msa1100630 MtrunA17_Chr3g0142111 39.535 301 175 4 3 298 20 318 2.22e-71 231
Msa1100630 MtrunA17_Chr4g0059971 28.750 560 334 9 19 517 28 583 6.63e-71 238
Msa1100630 MtrunA17_Chr7g0271221 27.500 560 332 8 27 534 17 554 2.69e-70 236
Msa1100630 MtrunA17_Chr7g0261731 38.007 271 166 1 13 281 17 287 4.12e-69 226
Msa1100630 MtrunA17_Chr6g0451841 31.970 538 288 11 37 515 15 533 2.90e-68 229
Msa1100630 MtrunA17_Chr8g0362781 27.986 561 332 9 23 517 26 580 6.38e-68 229
Msa1100630 MtrunA17_Chr7g0261751 37.324 284 174 2 13 292 17 300 1.69e-66 224
Msa1100630 MtrunA17_Chr7g0261751 36.735 98 59 2 300 396 391 486 4.68e-13 71.6
Msa1100630 MtrunA17_Chr3g0133341 28.697 568 330 11 23 530 10 562 3.63e-66 224
Msa1100630 MtrunA17_Chr4g0059981 27.798 554 339 8 33 526 37 589 1.21e-61 213
Msa1100630 MtrunA17_Chr7g0255601 28.378 592 353 14 1 531 3 584 3.20e-61 212
Msa1100630 MtrunA17_Chr8g0390331 27.860 542 334 7 26 514 14 551 4.09e-61 211
Msa1100630 MtrunA17_Chr1g0157601 28.386 539 320 10 39 519 27 557 6.37e-60 207
Msa1100630 MtrunA17_Chr8g0362801 28.817 465 264 8 115 517 1 460 2.58e-58 201
Msa1100630 MtrunA17_Chr1g0157611 27.551 588 349 9 1 530 1 569 2.83e-57 200
Msa1100630 MtrunA17_Chr1g0157621 26.703 543 333 9 48 533 1 535 2.47e-53 189
Msa1100630 MtrunA17_Chr4g0060001 27.211 588 354 12 2 527 3 578 7.38e-53 189
Msa1100630 MtrunA17_Chr5g0399061 35.211 284 179 2 19 298 19 301 6.06e-52 186
Msa1100630 MtrunA17_Chr5g0399061 37.984 258 155 3 261 517 318 571 9.23e-46 169
Msa1100630 MtrunA17_Chr7g0240271 25.000 576 357 9 25 535 22 587 8.43e-51 183
Msa1100630 MtrunA17_Chr4g0056431 35.161 310 187 5 13 315 11 313 6.72e-50 181
Msa1100630 MtrunA17_Chr4g0056431 33.110 299 191 5 237 531 295 588 1.58e-43 163
Msa1100630 MtrunA17_Chr1g0177591 26.903 565 329 15 2 509 21 558 1.71e-49 179
Msa1100630 MtrunA17_Chr2g0325951 26.316 570 330 13 14 517 1 546 3.07e-46 170
Msa1100630 MtrunA17_Chr3g0112631 35.950 242 149 4 298 536 54 292 1.28e-45 162
Msa1100630 MtrunA17_Chr2g0325961 26.095 571 331 12 14 517 1 547 1.50e-44 165
Msa1100630 MtrunA17_Chr3g0142121 34.201 269 157 5 266 533 27 276 1.89e-44 158
Msa1100630 MtrunA17_Chr7g0240281 25.868 576 349 14 25 530 22 589 8.61e-43 161
Msa1100630 MtrunA17_Chr2g0326211 26.860 551 318 12 28 517 20 546 1.11e-41 157
Msa1100630 MtrunA17_Chr1g0147631 25.709 564 354 15 27 533 25 580 1.02e-40 155
Msa1100630 MtrunA17_Chr7g0234151 30.414 411 230 9 144 515 25 418 9.51e-40 149
Msa1100630 MtrunA17_Chr7g0235521 24.788 472 280 9 127 533 13 474 1.04e-39 150
Msa1100630 MtrunA17_Chr1g0177611 27.187 423 243 8 141 509 18 429 1.17e-39 149
Msa1100630 MtrunA17_Chr7g0261721 37.500 200 122 2 318 517 4 200 1.74e-39 143
Msa1100630 MtrunA17_Chr8g0362711 37.557 221 135 3 298 517 352 570 2.18e-39 151
Msa1100630 MtrunA17_Chr8g0362711 35.081 248 160 1 16 263 13 259 9.02e-34 135
Msa1100630 MtrunA17_Chr7g0240131 25.442 452 262 9 127 513 13 454 4.43e-39 149
Msa1100630 MtrunA17_Chr8g0353031 34.615 234 147 4 299 531 333 561 1.24e-38 149
Msa1100630 MtrunA17_Chr8g0353031 34.926 272 153 3 29 295 20 272 1.85e-36 142
Msa1100630 MtrunA17_Chr7g0240181 24.576 472 281 9 127 533 13 474 2.13e-38 147
Msa1100630 MtrunA17_Chr7g0240211 24.576 472 281 9 127 533 13 474 2.32e-38 147
Msa1100630 MtrunA17_Chr5g0415961 34.363 259 166 2 8 263 2 259 6.06e-38 147
Msa1100630 MtrunA17_Chr5g0415961 38.428 229 130 6 298 523 356 576 6.49e-37 144
Msa1100630 MtrunA17_Chr2g0284701 33.058 242 157 5 295 533 363 602 9.27e-38 147
Msa1100630 MtrunA17_Chr2g0284701 32.143 280 186 3 8 283 12 291 6.55e-37 144
Msa1100630 MtrunA17_Chr5g0415791 30.469 256 171 2 19 271 25 276 2.55e-37 145
Msa1100630 MtrunA17_Chr5g0415791 36.889 225 133 4 297 517 357 576 5.47e-36 142
Msa1100630 MtrunA17_Chr7g0234381 29.880 415 239 10 138 515 19 418 5.64e-37 141
Msa1100630 MtrunA17_Chr3g0082631 35.426 223 140 3 299 519 240 460 1.99e-36 141
Msa1100630 MtrunA17_Chr3g0082631 41.803 122 71 0 149 270 30 151 3.49e-25 108
Msa1100630 MtrunA17_Chr4g0060071 34.978 223 137 4 298 517 80 297 2.16e-36 137
Msa1100630 MtrunA17_Chr1g0177631 26.603 421 244 9 143 509 20 429 4.73e-36 139
Msa1100630 MtrunA17_Chr4g0059991 34.667 225 140 3 317 535 372 595 5.31e-36 142
Msa1100630 MtrunA17_Chr4g0059991 27.985 268 191 1 33 298 28 295 5.12e-29 121
Msa1100630 MtrunA17_Chr7g0234181 28.537 417 242 9 138 515 14 413 4.46e-35 136
Msa1100630 MtrunA17_Chr8g0379971 38.136 236 140 5 295 526 365 598 1.29e-34 137
Msa1100630 MtrunA17_Chr8g0379971 29.412 289 185 3 14 283 7 295 1.22e-31 129
Msa1100630 MtrunA17_Chr7g0240151 24.153 472 265 11 127 533 13 456 7.76e-33 130
Msa1100630 MtrunA17_Chr2g0331481 33.333 219 144 2 317 535 370 586 4.16e-30 124
Msa1100630 MtrunA17_Chr2g0331481 27.473 273 188 6 5 271 1 269 8.13e-23 102
Msa1100630 MtrunA17_Chr2g0331471 33.333 219 144 2 317 535 433 649 6.14e-30 124
Msa1100630 MtrunA17_Chr2g0331471 28.261 276 185 7 3 271 63 332 5.73e-24 106
Msa1100630 MtrunA17_Chr2g0331511 31.441 229 154 3 308 535 356 582 3.49e-29 122
Msa1100630 MtrunA17_Chr2g0331511 26.119 268 194 3 5 271 1 265 8.93e-23 102
Msa1100630 MtrunA17_Chr8g0379991 36.864 236 143 5 295 526 338 571 4.03e-29 121
Msa1100630 MtrunA17_Chr8g0379991 30.000 270 155 4 45 283 1 267 1.55e-25 110
Msa1100630 MtrunA17_Chr5g0415841 30.088 226 144 4 300 520 245 461 1.37e-28 118
Msa1100630 MtrunA17_Chr5g0415841 26.667 165 118 1 115 276 1 165 5.50e-16 80.5
Msa1100630 MtrunA17_Chr2g0331521 33.990 203 131 3 308 509 357 557 1.66e-28 119
Msa1100630 MtrunA17_Chr2g0331521 27.863 262 183 4 9 265 1 261 2.39e-24 107
Msa1100630 MtrunA17_Chr3g0112651 32.973 185 120 2 114 298 21 201 4.92e-28 111
Msa1100630 MtrunA17_Chr4g0003761 31.527 203 136 3 308 509 363 563 1.20e-26 114
Msa1100630 MtrunA17_Chr4g0003761 31.646 237 154 5 39 271 42 274 1.23e-23 104
Msa1100630 MtrunA17_Chr2g0331461 31.050 219 149 2 317 535 370 586 9.45e-26 111
Msa1100630 MtrunA17_Chr2g0331461 26.909 275 187 6 5 271 1 269 6.02e-17 84.3
Msa1100630 MtrunA17_Chr4g0060061 37.500 120 75 0 133 252 2 121 6.26e-21 89.0
Msa1100630 MtrunA17_Chr7g0261671 36.364 110 70 0 2 111 7 116 4.63e-19 83.2
Msa1100630 MtrunA17_Chr4g0014851 38.000 100 62 0 14 113 17 116 2.21e-18 82.4
Msa1100630 MtrunA17_Chr1g0166721 34.653 101 66 0 13 113 11 111 6.48e-18 80.9
Msa1100630 MtrunA17_Chr3g0112661 40.230 87 52 0 15 101 19 105 7.91e-18 80.1
Msa1100630 MtrunA17_Chr2g0326221 28.571 217 122 5 302 517 38 222 4.29e-16 77.8
Msa1100630 MtrunA17_Chr3g0082621 43.077 65 37 0 49 113 8 72 4.46e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1100630 AT1G32450.1 53.613 595 200 10 6 533 14 599 0.0 594
Msa1100630 AT5G19640.1 55.978 552 169 5 30 526 60 592 0.0 586
Msa1100630 AT3G54140.1 40.663 573 276 8 7 522 2 567 2.44e-143 425
Msa1100630 AT3G54140.2 40.663 573 276 8 7 522 2 567 2.44e-143 425
Msa1100630 AT4G21680.1 68.792 298 91 2 1 298 1 296 2.46e-142 423
Msa1100630 AT4G21680.1 71.053 228 61 3 298 523 354 578 1.04e-96 305
Msa1100630 AT2G02020.2 39.615 520 301 6 2 519 15 523 6.46e-131 392
Msa1100630 AT2G02020.1 38.590 539 301 7 2 519 15 544 1.25e-128 387
Msa1100630 AT5G01180.2 37.326 576 296 9 5 523 1 568 1.83e-128 387
Msa1100630 AT5G01180.3 37.326 576 296 9 5 523 1 568 1.83e-128 387
Msa1100630 AT5G01180.1 37.326 576 296 9 5 523 1 568 1.83e-128 387
Msa1100630 AT1G62200.1 36.861 567 287 8 2 508 22 577 1.21e-119 365
Msa1100630 AT2G02040.1 36.760 574 302 9 2 519 14 582 4.95e-117 358
Msa1100630 AT5G46050.1 32.914 556 319 7 13 517 11 563 1.14e-100 315
Msa1100630 AT5G46040.1 32.343 572 330 8 13 530 11 579 8.90e-100 313
Msa1100630 AT2G26690.1 34.904 573 305 10 13 529 8 568 1.20e-98 310
Msa1100630 AT1G22540.1 35.688 538 301 7 17 515 18 549 2.39e-97 306
Msa1100630 AT2G37900.1 30.961 562 319 7 14 521 23 569 5.55e-94 298
Msa1100630 AT3G54450.1 31.272 566 307 9 26 529 8 553 4.79e-93 295
Msa1100630 AT1G72140.1 33.582 536 315 8 17 517 22 551 2.69e-92 293
Msa1100630 AT2G26690.2 35.130 538 281 10 48 529 10 535 2.59e-91 290
Msa1100630 AT2G26690.3 35.206 534 278 10 52 529 2 523 4.79e-91 289
Msa1100630 AT1G22550.1 35.368 557 300 10 13 519 14 560 5.08e-91 290
Msa1100630 AT2G40460.1 32.379 559 318 9 10 517 5 554 8.85e-91 290
Msa1100630 AT1G12110.1 31.359 574 327 6 19 532 17 583 4.72e-89 285
Msa1100630 AT1G68570.1 32.812 576 321 10 21 536 17 586 1.31e-88 285
Msa1100630 AT1G68570.2 33.153 555 307 9 42 536 6 556 5.17e-88 282
Msa1100630 AT3G21670.1 32.933 583 313 10 15 533 12 580 2.31e-87 281
Msa1100630 AT1G72130.1 36.096 543 279 9 21 519 16 534 6.97e-87 278
Msa1100630 AT1G72120.1 33.700 546 310 9 17 519 17 553 6.01e-85 274
Msa1100630 AT1G72125.1 33.818 550 308 9 17 519 17 557 2.66e-84 272
Msa1100630 AT5G13400.1 31.088 579 333 8 18 536 52 624 6.89e-84 273
Msa1100630 AT1G69870.1 30.662 574 327 11 26 536 48 613 1.06e-82 270
Msa1100630 AT1G22570.1 32.661 545 300 11 8 496 5 538 1.51e-82 268
Msa1100630 AT2G37900.2 29.980 507 286 7 72 524 2 493 6.26e-78 254
Msa1100630 AT1G22570.2 33.200 500 271 10 49 496 13 501 3.38e-77 253
Msa1100630 AT1G59740.1 29.145 573 340 8 15 530 27 590 2.80e-76 252
Msa1100630 AT5G14940.1 30.686 554 301 12 27 516 5 539 5.90e-75 248
Msa1100630 AT5G46050.2 32.599 454 252 7 115 517 1 451 1.15e-74 244
Msa1100630 AT1G33440.1 32.258 558 307 9 15 515 24 567 2.10e-72 242
Msa1100630 AT5G62730.1 29.167 576 336 8 3 522 30 589 2.53e-72 241
Msa1100630 AT1G62200.2 39.032 310 183 3 2 305 22 331 1.15e-69 235
Msa1100630 AT1G62200.2 43.602 211 108 2 298 508 407 606 3.67e-50 182
Msa1100630 AT1G27040.1 29.485 563 346 7 4 518 2 561 1.35e-69 234
Msa1100630 AT1G62200.3 39.032 310 183 3 2 305 36 345 1.38e-69 235
Msa1100630 AT1G62200.3 43.602 211 108 2 298 508 421 620 4.73e-50 182
Msa1100630 AT1G27040.2 29.623 557 341 7 10 518 4 557 1.57e-69 233
Msa1100630 AT5G62730.2 29.412 544 312 8 35 522 3 530 1.65e-66 224
Msa1100630 AT1G72130.2 35.782 422 219 7 141 519 4 416 2.02e-66 221
Msa1100630 AT1G72130.3 35.782 422 219 7 141 519 4 416 2.02e-66 221
Msa1100630 AT3G01350.1 29.558 565 311 9 38 532 16 563 2.73e-66 225
Msa1100630 AT1G27040.3 29.885 522 315 7 45 518 11 529 3.25e-65 221
Msa1100630 AT1G69850.1 30.427 585 322 14 8 517 4 578 5.64e-62 214
Msa1100630 AT5G62680.1 26.855 566 347 11 33 536 47 607 1.74e-61 213
Msa1100630 AT1G69860.1 27.491 542 327 9 33 520 22 551 8.65e-61 210
Msa1100630 AT1G27080.2 28.918 536 304 13 58 533 1 519 8.86e-58 201
Msa1100630 AT1G18880.1 26.727 550 331 9 33 517 23 565 2.76e-57 201
Msa1100630 AT1G52190.1 25.752 532 332 8 39 509 31 560 3.61e-57 201
Msa1100630 AT3G25260.1 26.079 533 330 9 19 515 11 515 1.79e-56 197
Msa1100630 AT1G27080.1 27.065 569 334 11 27 533 12 561 5.97e-52 186
Msa1100630 AT3G47960.1 25.946 555 344 13 33 526 65 613 2.01e-51 186
Msa1100630 AT3G45650.1 23.675 566 368 8 13 530 6 555 3.47e-50 181
Msa1100630 AT3G45710.1 24.780 569 346 10 20 531 14 557 8.12e-50 180
Msa1100630 AT3G45660.1 24.624 532 337 8 47 530 39 554 1.01e-49 180
Msa1100630 AT3G45660.3 24.624 532 337 8 47 530 39 554 1.01e-49 180
Msa1100630 AT3G45660.2 24.624 532 337 8 47 530 60 575 1.16e-49 180
Msa1100630 AT5G11570.1 28.392 479 304 12 39 509 23 470 1.54e-48 175
Msa1100630 AT3G25280.1 26.032 557 334 15 1 515 1 521 4.05e-48 175
Msa1100630 AT3G45680.1 24.216 574 352 11 15 531 8 555 2.25e-47 174
Msa1100630 AT3G53960.1 31.148 305 201 2 14 318 22 317 5.55e-47 173
Msa1100630 AT3G53960.1 34.146 246 145 4 299 533 358 597 9.41e-40 153
Msa1100630 AT3G45700.1 23.227 564 356 10 19 531 8 545 5.69e-46 169
Msa1100630 AT3G45650.2 22.804 592 367 9 13 530 6 581 1.15e-45 169
Msa1100630 AT3G45720.1 23.006 539 335 10 51 533 41 555 5.56e-45 167
Msa1100630 AT3G45690.1 22.346 537 308 11 47 533 36 513 1.87e-36 142
Msa1100630 AT3G16180.1 28.205 273 183 5 263 532 314 576 9.36e-30 124
Msa1100630 AT3G16180.1 29.183 257 179 3 23 276 16 272 4.04e-27 115
Msa1100630 AT5G28470.2 27.823 248 179 0 23 270 11 258 1.93e-26 113
Msa1100630 AT5G28470.2 27.184 206 143 2 318 523 363 561 3.32e-19 91.3
Msa1100630 AT5G28470.1 27.823 248 179 0 23 270 11 258 2.01e-26 113
Msa1100630 AT5G28470.1 26.699 206 142 3 318 523 363 559 9.55e-17 84.0
Msa1100630 AT2G38100.2 25.328 229 151 4 57 284 2 211 2.37e-11 66.6
Msa1100630 AT2G38100.1 25.523 239 157 5 47 284 9 227 2.62e-11 66.6
Msa1100630 AT2G38100.3 25.523 239 157 5 47 284 15 233 2.69e-11 66.6

Find 106 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTACATCTTCTCTCTTCT+TGG 0.208407 7_3:+30785306 Msa1100630:CDS
CTAGTTCATTGTCGATATTT+TGG 0.229657 7_3:+30787464 Msa1100630:CDS
CTTTCCTTAGTGACTCTTAT+TGG 0.253324 7_3:+30785331 Msa1100630:CDS
CACAAAGATGACTTGGAAAA+TGG 0.258789 7_3:-30785373 None:intergenic
TTTCCTTAGTGACTCTTATT+GGG 0.266964 7_3:+30785332 Msa1100630:CDS
TGTACCACACACAAGGATTT+AGG 0.290459 7_3:+30786531 Msa1100630:CDS
TCCTAAGGCTACTAGATAAA+TGG 0.292386 7_3:-30786114 None:intergenic
ACATGCTTGCAGGAGGGATA+TGG 0.295948 7_3:-30787213 None:intergenic
GAACTTAAACATGGGACATT+TGG 0.326049 7_3:+30787705 Msa1100630:CDS
TGATCCACAAGGTAATTCTT+TGG 0.330246 7_3:-30786057 None:intergenic
GGCATGCTTGGTTGGATTCC+AGG 0.333777 7_3:+30787682 Msa1100630:CDS
AGAACTGGAACTTGGTTTGC+AGG 0.334798 7_3:+30784278 Msa1100630:CDS
TGCAGGAGGGATATGGAAAT+TGG 0.336511 7_3:-30787206 None:intergenic
TGTATGACTTCAATATCATT+AGG 0.345321 7_3:+30787601 Msa1100630:CDS
GTTGAAGAGTGTTTATCTAA+TGG 0.346259 7_3:+30786497 Msa1100630:CDS
CAACCTAACATTGCTACATT+TGG 0.350494 7_3:+30786149 Msa1100630:CDS
TATAAATATGTTAAATTTCA+AGG 0.350933 7_3:+30787799 Msa1100630:CDS
TTGAAGCTCCGTGATACCTT+TGG 0.354351 7_3:-30787323 None:intergenic
GTACCGCAATATGTACTAAT+AGG 0.359209 7_3:+30787490 Msa1100630:CDS
TCAAAGCTTGACATGCTTGC+AGG 0.361856 7_3:-30787223 None:intergenic
TTTCATGTATGTTGGTCAAT+TGG 0.368808 7_3:+30787525 Msa1100630:CDS
ACTCTTCTCAAACACCATAT+TGG 0.370740 7_3:+30786262 Msa1100630:CDS
CCTGATGGATTGAAGAGCTT+TGG 0.373551 7_3:+30787568 Msa1100630:CDS
ATCTTCAAAATAGTCCAATA+TGG 0.384719 7_3:-30786276 None:intergenic
TTGTTGCAGCAATAAGAAAA+TGG 0.394125 7_3:+30786435 Msa1100630:CDS
GATGAGGGACTATGGACTTT+GGG 0.398437 7_3:+30786296 Msa1100630:CDS
GCACCAAATGTAGCAATGTT+AGG 0.407357 7_3:-30786152 None:intergenic
CTCTGTGGTCTTCAGTCAAA+TGG 0.426560 7_3:+30787138 Msa1100630:intron
CACAACCATTTGGCTTCAAT+AGG 0.430672 7_3:-30786031 None:intergenic
TGTCCCATGTTTAAGTTCCC+TGG 0.431807 7_3:-30787700 None:intergenic
TCTTTGGACCCACAACCATT+TGG 0.432330 7_3:-30786041 None:intergenic
TTCGAGAGAGAACTGGAACT+TGG 0.433022 7_3:+30784270 Msa1100630:CDS
TATAGATACTTTAAACCTGC+TGG 0.434208 7_3:+30786383 Msa1100630:CDS
TATCTAGTAGCCTTAGGAAA+TGG 0.436717 7_3:+30786119 Msa1100630:CDS
ACTTGACAAAACCTAGGAAA+AGG 0.439460 7_3:-30786410 None:intergenic
CCTGCTGTTCGAGAGAGAAC+TGG 0.440510 7_3:+30784263 Msa1100630:CDS
CTCGAGGTTTGCACATTGGA+TGG 0.444437 7_3:+30784218 Msa1100630:CDS
TGGAAGGTCAAAATGTTAGA+AGG 0.446308 7_3:+30786455 Msa1100630:CDS
AGATGAGGGACTATGGACTT+TGG 0.448427 7_3:+30786295 Msa1100630:CDS
TCAAATGGCATCACTCTTTG+TGG 0.451020 7_3:+30787153 Msa1100630:CDS
CCAAAGCTCTTCAATCCATC+AGG 0.464327 7_3:-30787568 None:intergenic
TGGTTCTGCTGCCCTAGCAT+TGG 0.467038 7_3:+30786334 Msa1100630:CDS
AGGCGAAGATAAACTTTATG+AGG 0.468002 7_3:+30786475 Msa1100630:CDS
GAGCTTCAAAGGATGGGAAT+AGG 0.472418 7_3:+30787337 Msa1100630:CDS
CTATTGAAGCCAAATGGTTG+TGG 0.473171 7_3:+30786032 Msa1100630:CDS
CTGCAGTGAGTGCTGCTAAG+AGG 0.473539 7_3:-30787741 None:intergenic
CCAGTTCTCTCTCGAACAGC+AGG 0.474623 7_3:-30784263 None:intergenic
GAAGAGTGTTTATCTAATGG+AGG 0.475298 7_3:+30786500 Msa1100630:CDS
AAGATATCTACTAGAAATGA+AGG 0.478705 7_3:+30787661 Msa1100630:CDS
TTTCCTTCATCTTCATCTAT+CGG 0.483360 7_3:+30787260 Msa1100630:CDS
ATATTCCTATTGAAGCCAAA+TGG 0.485401 7_3:+30786026 Msa1100630:CDS
ATCATAGCAATGGTTTCAGC+AGG 0.485714 7_3:+30787373 Msa1100630:CDS
CTTGACAAAACCTAGGAAAA+GGG 0.486770 7_3:-30786409 None:intergenic
ATGCTAGAGTTGCCAACCCT+TGG 0.487154 7_3:-30785185 None:intergenic
TCCATTTATCTAGTAGCCTT+AGG 0.491646 7_3:+30786113 Msa1100630:CDS
ACTAGAAATGAAGGCATGCT+TGG 0.492691 7_3:+30787670 Msa1100630:CDS
AACAATGTGAGCAAGTGGAC+GGG 0.503343 7_3:+30785279 Msa1100630:CDS
GAAATGAAGGCATGCTTGGT+TGG 0.507707 7_3:+30787674 Msa1100630:CDS
GGCATTAGTGAACCAAGGGT+TGG 0.509768 7_3:+30785173 Msa1100630:intron
TATTGAAGCCAAATGGTTGT+GGG 0.515070 7_3:+30786033 Msa1100630:CDS
CTAGGAAAAGGGTTTCCAGC+AGG 0.518077 7_3:-30786398 None:intergenic
TTCTATGTGACAGGGTTTGG+TGG 0.518870 7_3:+30785983 Msa1100630:intron
AAGGTATCACGGAGCTTCAA+AGG 0.520249 7_3:+30787326 Msa1100630:CDS
TTCCCCAATAAGAGTCACTA+AGG 0.520883 7_3:-30785335 None:intergenic
ACACTCTACACATAAAGCTC+TGG 0.524331 7_3:-30787856 None:intergenic
TTGATATCCTCCATTTCCTA+AGG 0.525360 7_3:-30786129 None:intergenic
AAAGAAACAAAACCAATGCT+AGG 0.529942 7_3:-30786346 None:intergenic
GCATGCTTGGTTGGATTCCA+GGG 0.534078 7_3:+30787683 Msa1100630:CDS
GAACTGGAACTTGGTTTGCA+GGG 0.535045 7_3:+30784279 Msa1100630:CDS
TTCAATTCACAAGCACCTGA+TGG 0.536588 7_3:+30787553 Msa1100630:CDS
GGAGCTCGAGGTTTGCACAT+TGG 0.540921 7_3:+30784214 Msa1100630:CDS
CCATTGCAATATAGACTACA+AGG 0.541318 7_3:-30787768 None:intergenic
TAAACATGGGACATTTGGAT+AGG 0.549379 7_3:+30787710 Msa1100630:CDS
TTACAATCACAAAGATGACT+TGG 0.555708 7_3:-30785380 None:intergenic
TATCACGGAGCTTCAAAGGA+TGG 0.559645 7_3:+30787330 Msa1100630:CDS
AGTATTATCAATCATAGCAA+TGG 0.561419 7_3:+30787363 Msa1100630:CDS
GCATCACTCTTTGTGGAACA+AGG 0.563672 7_3:+30787160 Msa1100630:CDS
ATCACGGAGCTTCAAAGGAT+GGG 0.566161 7_3:+30787331 Msa1100630:CDS
TTCCTTAGTGACTCTTATTG+GGG 0.567551 7_3:+30785333 Msa1100630:CDS
TCTCCGATAGATGAAGATGA+AGG 0.574939 7_3:-30787263 None:intergenic
ATTCCAGGGAACTTAAACAT+GGG 0.577247 7_3:+30787697 Msa1100630:CDS
AATGAAATCCAAAGGTATCA+CGG 0.577592 7_3:+30787315 Msa1100630:CDS
AAGAGTGTTTATCTAATGGA+GGG 0.586747 7_3:+30786501 Msa1100630:CDS
ACAATGTGAGCAAGTGGACG+GGG 0.587255 7_3:+30785280 Msa1100630:CDS
AAAATTGTAGCCGTTGTGAA+GGG 0.587450 7_3:+30787440 Msa1100630:CDS
CTAGTAGCCTTAGGAAATGG+AGG 0.594221 7_3:+30786122 Msa1100630:CDS
TGTGGAACAAGGTGCTGCAA+TGG 0.595250 7_3:+30787171 Msa1100630:CDS
AAACAATGTGAGCAAGTGGA+CGG 0.595747 7_3:+30785278 Msa1100630:CDS
CCTTGTAGTCTATATTGCAA+TGG 0.597420 7_3:+30787768 Msa1100630:CDS
AAGCTTGACATGCTTGCAGG+AGG 0.599138 7_3:-30787220 None:intergenic
TGCAGCAATAAGAAAATGGA+AGG 0.599680 7_3:+30786439 Msa1100630:CDS
CTGCAAACAATGTGAGCAAG+TGG 0.601762 7_3:+30785274 Msa1100630:CDS
AGCTTGACATGCTTGCAGGA+GGG 0.603779 7_3:-30787219 None:intergenic
AAGAAACAAAACCAATGCTA+GGG 0.607762 7_3:-30786345 None:intergenic
GATTCCAGGGAACTTAAACA+TGG 0.610003 7_3:+30787696 Msa1100630:CDS
TAGTCTATATTGCAATGGCT+AGG 0.624517 7_3:+30787773 Msa1100630:CDS
ACAAGTGAACAAGGAGCTCG+AGG 0.633588 7_3:+30784202 Msa1100630:CDS
GGGTCCAAAGAATTACCTTG+TGG 0.636025 7_3:+30786053 Msa1100630:CDS
AGATTTAAAATGAAATCCAA+AGG 0.648112 7_3:+30787307 Msa1100630:CDS
AATGGAGAAACAAGTGAACA+AGG 0.649738 7_3:+30784193 None:intergenic
TCTATATTGCAATGGCTAGG+TGG 0.651956 7_3:+30787776 Msa1100630:CDS
GCTCCTATTAGTACATATTG+CGG 0.670504 7_3:-30787493 None:intergenic
CTTACCTAAATCCTTGTGTG+TGG 0.675525 7_3:-30786535 None:intergenic
TATGATGAATGTGATCCACA+AGG 0.710482 7_3:-30786068 None:intergenic
ATGAACTAGTCCCTTCACAA+CGG 0.715303 7_3:-30787450 None:intergenic
GATGGATCTATTGATAGACA+CGG 0.738265 7_3:+30784236 Msa1100630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAATTAATTAAAAA+CGG + chr7_3:30785554-30785573 Msa1100630:intron 0.0%
!!! GTTTATTTTAAATTTTAAGT+TGG + chr7_3:30784532-30784551 Msa1100630:intron 10.0%
!!! TTAAAACTTTTAAAACATAA+AGG - chr7_3:30784962-30784981 None:intergenic 10.0%
!! AAACAAAAAAAAAAACAATA+TGG + chr7_3:30784810-30784829 Msa1100630:intron 10.0%
!! AACAAAAAAAAAAACAATAT+GGG + chr7_3:30784811-30784830 Msa1100630:intron 10.0%
!!! TATTAATTAATGTTGAATTT+TGG + chr7_3:30785152-30785171 Msa1100630:intron 10.0%
!!! TTTCTTTTTTAAACAATATA+TGG - chr7_3:30785848-30785867 None:intergenic 10.0%
!!! ATTTTTTAGCTATTTTTATT+TGG + chr7_3:30786223-30786242 Msa1100630:CDS 10.0%
!! TATAAATATGTTAAATTTCA+AGG + chr7_3:30787799-30787818 Msa1100630:CDS 10.0%
!! TTTGATTGTTTAAACAATAT+GGG + chr7_3:30784658-30784677 Msa1100630:intron 15.0%
!! AATATATATTCATACAAACA+GGG - chr7_3:30784774-30784793 None:intergenic 15.0%
!!! ATGTTTTAAAAGTTTTAAGT+TGG - chr7_3:30784561-30784580 None:intergenic 15.0%
!!! CTTAAAACTTTTAAAACATA+AGG + chr7_3:30784961-30784980 Msa1100630:intron 15.0%
!!! TATGTTTTAAGTAATTTTGT+TGG + chr7_3:30785428-30785447 Msa1100630:intron 15.0%
!! TAGATACTAATTAGAAAAAA+TGG + chr7_3:30785487-30785506 Msa1100630:intron 15.0%
!! AGATACTAATTAGAAAAAAT+GGG + chr7_3:30785488-30785507 Msa1100630:intron 15.0%
!!! AAATATACCAAATTTTAGTT+TGG - chr7_3:30785624-30785643 None:intergenic 15.0%
!!! TTAAGTTTGACTTTAAAATA+AGG - chr7_3:30785670-30785689 None:intergenic 15.0%
!!! TTATTTTAAAGTCAAACTTA+AGG + chr7_3:30785669-30785688 Msa1100630:intron 15.0%
!! AAGTAAAATACAAACAAATA+TGG + chr7_3:30786620-30786639 Msa1100630:intron 15.0%
!! AAAATGATTAATTGCATGTT+TGG + chr7_3:30784501-30784520 Msa1100630:intron 20.0%
!! CTTTGATTGTTTAAACAATA+TGG + chr7_3:30784657-30784676 Msa1100630:intron 20.0%
!! CAAAATATTACAAAAACAAG+CGG - chr7_3:30784694-30784713 None:intergenic 20.0%
!! GAATATATATTCATACAAAC+AGG - chr7_3:30784775-30784794 None:intergenic 20.0%
!! TTTGTTTGAAGAAACAAAAT+TGG - chr7_3:30784797-30784816 None:intergenic 20.0%
!! TTTATAAAATTTGTATTCCC+AGG - chr7_3:30785126-30785145 None:intergenic 20.0%
!! TTTAAAAAAGAAAGACATGA+TGG + chr7_3:30785855-30785874 Msa1100630:intron 20.0%
!! TTAAAAAAGAAAGACATGAT+GGG + chr7_3:30785856-30785875 Msa1100630:intron 20.0%
!!! TCATATATAGTTTTAAATCG+AGG - chr7_3:30786717-30786736 None:intergenic 20.0%
!! ATATCATTGTGTTACATATA+CGG - chr7_3:30786747-30786766 None:intergenic 20.0%
!!! GAATTTAAACTAATTTTGCT+AGG + chr7_3:30786963-30786982 Msa1100630:intron 20.0%
!! TATTAAGATTACTTCCAATT+TGG + chr7_3:30787098-30787117 Msa1100630:intron 20.0%
!!! AGATTTAAAATGAAATCCAA+AGG + chr7_3:30787307-30787326 Msa1100630:CDS 20.0%
!!! ATGTTTTGACAATTTCAAGT+TGG + chr7_3:30784590-30784609 Msa1100630:intron 25.0%
! CAATCAAAGAAAATAAGAGA+CGG - chr7_3:30784646-30784665 None:intergenic 25.0%
!!! CGCTTGTTTTTGTAATATTT+TGG + chr7_3:30784692-30784711 Msa1100630:intron 25.0%
! AACAATTAAGTCACTATACA+AGG + chr7_3:30785094-30785113 Msa1100630:intron 25.0%
! ACAATTAAGTCACTATACAA+GGG + chr7_3:30785095-30785114 Msa1100630:intron 25.0%
!! ATTAAAAACGGGAAATTTTG+AGG + chr7_3:30785566-30785585 Msa1100630:intron 25.0%
! AAAAGGACCAAACTAAAATT+TGG + chr7_3:30785614-30785633 Msa1100630:intron 25.0%
! GTCTCAGTATTGTTTAAAAA+AGG + chr7_3:30785756-30785775 Msa1100630:intron 25.0%
!! TATTCTCTTTTTATATCCCT+CGG - chr7_3:30785890-30785909 None:intergenic 25.0%
! AGGGATATAAAAAGAGAATA+AGG + chr7_3:30785890-30785909 Msa1100630:intron 25.0%
! GGGATATAAAAAGAGAATAA+GGG + chr7_3:30785891-30785910 Msa1100630:intron 25.0%
! TTAATAATGTTCTATGTGAC+AGG + chr7_3:30785974-30785993 Msa1100630:intron 25.0%
! TAATAATGTTCTATGTGACA+GGG + chr7_3:30785975-30785994 Msa1100630:intron 25.0%
!!! TTTTATTTGGCTTTGAACAT+TGG + chr7_3:30786236-30786255 Msa1100630:CDS 25.0%
! ATCTTCAAAATAGTCCAATA+TGG - chr7_3:30786279-30786298 None:intergenic 25.0%
! GTATATATAGTCAAGATCAT+AGG + chr7_3:30786828-30786847 Msa1100630:intron 25.0%
!! TTGATCGTTATGTTTTGTAT+AGG + chr7_3:30786910-30786929 Msa1100630:intron 25.0%
! AGTATTATCAATCATAGCAA+TGG + chr7_3:30787363-30787382 Msa1100630:CDS 25.0%
! TGTATGACTTCAATATCATT+AGG + chr7_3:30787601-30787620 Msa1100630:CDS 25.0%
! AAGATATCTACTAGAAATGA+AGG + chr7_3:30787661-30787680 Msa1100630:CDS 25.0%
!!! TTTGCAGGGATTTTGATTTT+AGG + chr7_3:30784293-30784312 Msa1100630:CDS 30.0%
ACTTAATATTATGTCGCGTA+AGG + chr7_3:30784900-30784919 Msa1100630:intron 30.0%
CTTAATATTATGTCGCGTAA+GGG + chr7_3:30784901-30784920 Msa1100630:intron 30.0%
ACCAATTAAGTCACTATACA+AGG + chr7_3:30785016-30785035 Msa1100630:intron 30.0%
CCAATTAAGTCACTATACAA+GGG + chr7_3:30785017-30785036 Msa1100630:intron 30.0%
ACTATACAAGGGAAATATCT+TGG + chr7_3:30785028-30785047 Msa1100630:intron 30.0%
TTGATATCACTAGAGATGTA+TGG - chr7_3:30785074-30785093 None:intergenic 30.0%
!!! ACTATTTTTGACAAGAGTGA+TGG + chr7_3:30785233-30785252 Msa1100630:CDS 30.0%
!!! CTATTTTTGACAAGAGTGAT+GGG + chr7_3:30785234-30785253 Msa1100630:CDS 30.0%
TTTCCTTAGTGACTCTTATT+GGG + chr7_3:30785332-30785351 Msa1100630:CDS 30.0%
TTACAATCACAAAGATGACT+TGG - chr7_3:30785383-30785402 None:intergenic 30.0%
ACCATATAAAATATGGTCGA+TGG - chr7_3:30785782-30785801 None:intergenic 30.0%
CTCTCACACCATATAAAATA+TGG - chr7_3:30785789-30785808 None:intergenic 30.0%
! ATTTTATATGGTGTGAGAGT+AGG + chr7_3:30785790-30785809 Msa1100630:intron 30.0%
ATATTCCTATTGAAGCCAAA+TGG + chr7_3:30786026-30786045 Msa1100630:CDS 30.0%
!!! TTTTTGAGTGTTGTTCACTA+GGG - chr7_3:30786199-30786218 None:intergenic 30.0%
!!! ATTTTTGAGTGTTGTTCACT+AGG - chr7_3:30786200-30786219 None:intergenic 30.0%
!! ATTGGACTATTTTGAAGATG+AGG + chr7_3:30786280-30786299 Msa1100630:CDS 30.0%
!! TTGGACTATTTTGAAGATGA+GGG + chr7_3:30786281-30786300 Msa1100630:CDS 30.0%
AAGAAACAAAACCAATGCTA+GGG - chr7_3:30786348-30786367 None:intergenic 30.0%
AAAGAAACAAAACCAATGCT+AGG - chr7_3:30786349-30786368 None:intergenic 30.0%
TATAGATACTTTAAACCTGC+TGG + chr7_3:30786383-30786402 Msa1100630:CDS 30.0%
ACAAAAACTTGACAAAACCT+AGG - chr7_3:30786419-30786438 None:intergenic 30.0%
TTGTTGCAGCAATAAGAAAA+TGG + chr7_3:30786435-30786454 Msa1100630:CDS 30.0%
!! GTTGAAGAGTGTTTATCTAA+TGG + chr7_3:30786497-30786516 Msa1100630:CDS 30.0%
!! AAGAGTGTTTATCTAATGGA+GGG + chr7_3:30786501-30786520 Msa1100630:CDS 30.0%
! TGATGATGAAATGTCACTAA+TGG + chr7_3:30786941-30786960 Msa1100630:intron 30.0%
! ACCAAAAGATTTAAAGCAGA+TGG + chr7_3:30787012-30787031 Msa1100630:intron 30.0%
!! TCCATCTGCTTTAAATCTTT+TGG - chr7_3:30787016-30787035 None:intergenic 30.0%
AAGAAAATAAATGCAGTCCA+TGG + chr7_3:30787035-30787054 Msa1100630:intron 30.0%
AATATAGTGCATAGCCAAAT+TGG - chr7_3:30787115-30787134 None:intergenic 30.0%
ATGCACTATATTATTCTCTG+TGG + chr7_3:30787123-30787142 Msa1100630:intron 30.0%
TTTCCTTCATCTTCATCTAT+CGG + chr7_3:30787260-30787279 Msa1100630:CDS 30.0%
! TTTTAAATCTCGCAACAAGA+GGG - chr7_3:30787297-30787316 None:intergenic 30.0%
! ATTTTAAATCTCGCAACAAG+AGG - chr7_3:30787298-30787317 None:intergenic 30.0%
!! AATGAAATCCAAAGGTATCA+CGG + chr7_3:30787315-30787334 Msa1100630:CDS 30.0%
! CTAGTTCATTGTCGATATTT+TGG + chr7_3:30787464-30787483 Msa1100630:CDS 30.0%
! TCAGAAGTTTTCATGTATGT+TGG + chr7_3:30787517-30787536 Msa1100630:CDS 30.0%
TTTCATGTATGTTGGTCAAT+TGG + chr7_3:30787525-30787544 Msa1100630:CDS 30.0%
GATGGATCTATTGATAGACA+CGG + chr7_3:30784236-30784255 Msa1100630:CDS 35.0%
! TTCTAACGTGGATAACGTTT+TGG + chr7_3:30784933-30784952 Msa1100630:intron 35.0%
CCCTTGTATAGTGACTTAAT+TGG - chr7_3:30785020-30785039 None:intergenic 35.0%
ACTATACAAGGGAAATACCT+GGG + chr7_3:30785106-30785125 Msa1100630:intron 35.0%
!! ATTTTGGCATTAGTGAACCA+AGG + chr7_3:30785168-30785187 Msa1100630:intron 35.0%
! TTTTGGCATTAGTGAACCAA+GGG + chr7_3:30785169-30785188 Msa1100630:intron 35.0%
!!! TTGGCAACTCTAGCATTTTT+TGG + chr7_3:30785192-30785211 Msa1100630:CDS 35.0%
!!! AACTCTAGCATTTTTTGGTG+TGG + chr7_3:30785197-30785216 Msa1100630:CDS 35.0%
!!! ACTCTAGCATTTTTTGGTGT+GGG + chr7_3:30785198-30785217 Msa1100630:CDS 35.0%
GTTTACATCTTCTCTCTTCT+TGG + chr7_3:30785306-30785325 Msa1100630:CDS 35.0%
CTTTCCTTAGTGACTCTTAT+TGG + chr7_3:30785331-30785350 Msa1100630:CDS 35.0%
TTCCTTAGTGACTCTTATTG+GGG + chr7_3:30785333-30785352 Msa1100630:CDS 35.0%
! CACAAAGATGACTTGGAAAA+TGG - chr7_3:30785376-30785395 None:intergenic 35.0%
TAAACAATACTGAGACCCTT+CGG - chr7_3:30785752-30785771 None:intergenic 35.0%
! GCCATCGACCATATTTTATA+TGG + chr7_3:30785778-30785797 Msa1100630:intron 35.0%
! ATGATGGGAAATAAAACCGA+GGG + chr7_3:30785871-30785890 Msa1100630:intron 35.0%
! TTTTCACGAGCACAAAAAGA+TGG - chr7_3:30785954-30785973 None:intergenic 35.0%
TATTGAAGCCAAATGGTTGT+GGG + chr7_3:30786033-30786052 Msa1100630:CDS 35.0%
TGATCCACAAGGTAATTCTT+TGG - chr7_3:30786060-30786079 None:intergenic 35.0%
TATGATGAATGTGATCCACA+AGG - chr7_3:30786071-30786090 None:intergenic 35.0%
TCCATTTATCTAGTAGCCTT+AGG + chr7_3:30786113-30786132 Msa1100630:CDS 35.0%
TCCTAAGGCTACTAGATAAA+TGG - chr7_3:30786117-30786136 None:intergenic 35.0%
! TATCTAGTAGCCTTAGGAAA+TGG + chr7_3:30786119-30786138 Msa1100630:CDS 35.0%
TTGATATCCTCCATTTCCTA+AGG - chr7_3:30786132-30786151 None:intergenic 35.0%
CAACCTAACATTGCTACATT+TGG + chr7_3:30786149-30786168 Msa1100630:CDS 35.0%
ACTCTTCTCAAACACCATAT+TGG + chr7_3:30786262-30786281 Msa1100630:CDS 35.0%
!! ATTTTGAAGATGAGGGACTA+TGG + chr7_3:30786288-30786307 Msa1100630:CDS 35.0%
!!! GCATTGGTTTTGTTTCTTTG+TGG + chr7_3:30786350-30786369 Msa1100630:CDS 35.0%
CTTGACAAAACCTAGGAAAA+GGG - chr7_3:30786412-30786431 None:intergenic 35.0%
ACTTGACAAAACCTAGGAAA+AGG - chr7_3:30786413-30786432 None:intergenic 35.0%
TGCAGCAATAAGAAAATGGA+AGG + chr7_3:30786439-30786458 Msa1100630:CDS 35.0%
TGGAAGGTCAAAATGTTAGA+AGG + chr7_3:30786455-30786474 Msa1100630:CDS 35.0%
AGGCGAAGATAAACTTTATG+AGG + chr7_3:30786475-30786494 Msa1100630:CDS 35.0%
!! GAAGAGTGTTTATCTAATGG+AGG + chr7_3:30786500-30786519 Msa1100630:CDS 35.0%
AGAAAAATGTACCACACACA+AGG + chr7_3:30786524-30786543 Msa1100630:CDS 35.0%
AAACGCATCACAAATGCAAT+TGG - chr7_3:30786657-30786676 None:intergenic 35.0%
!! CAGGATTAGTAGAGATTTTC+CGG + chr7_3:30787392-30787411 Msa1100630:CDS 35.0%
! CTTTTATCGCATACTTTAGC+CGG - chr7_3:30787414-30787433 None:intergenic 35.0%
AAAAATTGTAGCCGTTGTGA+AGG + chr7_3:30787439-30787458 Msa1100630:CDS 35.0%
AAAATTGTAGCCGTTGTGAA+GGG + chr7_3:30787440-30787459 Msa1100630:CDS 35.0%
GTACCGCAATATGTACTAAT+AGG + chr7_3:30787490-30787509 Msa1100630:CDS 35.0%
GCTCCTATTAGTACATATTG+CGG - chr7_3:30787496-30787515 None:intergenic 35.0%
ATTCCAGGGAACTTAAACAT+GGG + chr7_3:30787697-30787716 Msa1100630:CDS 35.0%
GAACTTAAACATGGGACATT+TGG + chr7_3:30787705-30787724 Msa1100630:CDS 35.0%
TAAACATGGGACATTTGGAT+AGG + chr7_3:30787710-30787729 Msa1100630:CDS 35.0%
CCATTGCAATATAGACTACA+AGG - chr7_3:30787771-30787790 None:intergenic 35.0%
CCTTGTAGTCTATATTGCAA+TGG + chr7_3:30787768-30787787 Msa1100630:CDS 35.0%
TAGTCTATATTGCAATGGCT+AGG + chr7_3:30787773-30787792 Msa1100630:CDS 35.0%
GGGACTAACTTATTCTAACG+TGG + chr7_3:30784921-30784940 Msa1100630:intron 40.0%
CACTATACAAGGGAAATACC+TGG + chr7_3:30785105-30785124 Msa1100630:intron 40.0%
AAACAATGTGAGCAAGTGGA+CGG + chr7_3:30785278-30785297 Msa1100630:CDS 40.0%
TTCCCCAATAAGAGTCACTA+AGG - chr7_3:30785338-30785357 None:intergenic 40.0%
AGCGTATGAGTGAAAAAGAC+TGG + chr7_3:30785696-30785715 Msa1100630:intron 40.0%
ACCATCATACACAATCCGAA+GGG + chr7_3:30785734-30785753 Msa1100630:intron 40.0%
! CATGATGGGAAATAAAACCG+AGG + chr7_3:30785870-30785889 Msa1100630:intron 40.0%
ATGTTCTATGTGACAGGGTT+TGG + chr7_3:30785980-30785999 Msa1100630:intron 40.0%
! CACAACCATTTGGCTTCAAT+AGG - chr7_3:30786034-30786053 None:intergenic 40.0%
CTATTGAAGCCAAATGGTTG+TGG + chr7_3:30786032-30786051 Msa1100630:CDS 40.0%
GCACCAAATGTAGCAATGTT+AGG - chr7_3:30786155-30786174 None:intergenic 40.0%
! TTGGGATTTTGTGTATCAGC+TGG + chr7_3:30786314-30786333 Msa1100630:CDS 40.0%
TGTACCACACACAAGGATTT+AGG + chr7_3:30786531-30786550 Msa1100630:CDS 40.0%
CTTACCTAAATCCTTGTGTG+TGG - chr7_3:30786538-30786557 None:intergenic 40.0%
CTACTTGTGTCACAGTTGAT+AGG - chr7_3:30787063-30787082 None:intergenic 40.0%
TCAAATGGCATCACTCTTTG+TGG + chr7_3:30787153-30787172 Msa1100630:CDS 40.0%
TCTCCGATAGATGAAGATGA+AGG - chr7_3:30787266-30787285 None:intergenic 40.0%
ATCATAGCAATGGTTTCAGC+AGG + chr7_3:30787373-30787392 Msa1100630:CDS 40.0%
ATGAACTAGTCCCTTCACAA+CGG - chr7_3:30787453-30787472 None:intergenic 40.0%
TTCAATTCACAAGCACCTGA+TGG + chr7_3:30787553-30787572 Msa1100630:CDS 40.0%
! ACTAGAAATGAAGGCATGCT+TGG + chr7_3:30787670-30787689 Msa1100630:CDS 40.0%
GATTCCAGGGAACTTAAACA+TGG + chr7_3:30787696-30787715 Msa1100630:CDS 40.0%
TCTATATTGCAATGGCTAGG+TGG + chr7_3:30787776-30787795 Msa1100630:CDS 40.0%
TTCGAGAGAGAACTGGAACT+TGG + chr7_3:30784270-30784289 Msa1100630:CDS 45.0%
!! AGAACTGGAACTTGGTTTGC+AGG + chr7_3:30784278-30784297 Msa1100630:CDS 45.0%
!! GAACTGGAACTTGGTTTGCA+GGG + chr7_3:30784279-30784298 Msa1100630:CDS 45.0%
AGCACAAGGCATACCAAAGA+GGG - chr7_3:30784741-30784760 None:intergenic 45.0%
TAGCACAAGGCATACCAAAG+AGG - chr7_3:30784742-30784761 None:intergenic 45.0%
TGGTATGCCTTGTGCTAAAG+AGG + chr7_3:30784745-30784764 Msa1100630:intron 45.0%
!! TTTTGGTGTGGGAGTGAATC+TGG + chr7_3:30785209-30785228 Msa1100630:CDS 45.0%
CTGCAAACAATGTGAGCAAG+TGG + chr7_3:30785274-30785293 Msa1100630:CDS 45.0%
AACAATGTGAGCAAGTGGAC+GGG + chr7_3:30785279-30785298 Msa1100630:CDS 45.0%
GACCATCATACACAATCCGA+AGG + chr7_3:30785733-30785752 Msa1100630:intron 45.0%
ACCCTTCGGATTGTGTATGA+TGG - chr7_3:30785738-30785757 None:intergenic 45.0%
TTCTATGTGACAGGGTTTGG+TGG + chr7_3:30785983-30786002 Msa1100630:intron 45.0%
TCTTTGGACCCACAACCATT+TGG - chr7_3:30786044-30786063 None:intergenic 45.0%
GGGTCCAAAGAATTACCTTG+TGG + chr7_3:30786053-30786072 Msa1100630:CDS 45.0%
! CTAGTAGCCTTAGGAAATGG+AGG + chr7_3:30786122-30786141 Msa1100630:CDS 45.0%
AGATGAGGGACTATGGACTT+TGG + chr7_3:30786295-30786314 Msa1100630:CDS 45.0%
GATGAGGGACTATGGACTTT+GGG + chr7_3:30786296-30786315 Msa1100630:CDS 45.0%
!! GTCACAGTTGATAGGAACCA+TGG - chr7_3:30787055-30787074 None:intergenic 45.0%
CTCTGTGGTCTTCAGTCAAA+TGG + chr7_3:30787138-30787157 Msa1100630:intron 45.0%
GCATCACTCTTTGTGGAACA+AGG + chr7_3:30787160-30787179 Msa1100630:CDS 45.0%
TGCAGGAGGGATATGGAAAT+TGG - chr7_3:30787209-30787228 None:intergenic 45.0%
TCAAAGCTTGACATGCTTGC+AGG - chr7_3:30787226-30787245 None:intergenic 45.0%
TTGAAGCTCCGTGATACCTT+TGG - chr7_3:30787326-30787345 None:intergenic 45.0%
! AAGGTATCACGGAGCTTCAA+AGG + chr7_3:30787326-30787345 Msa1100630:CDS 45.0%
TATCACGGAGCTTCAAAGGA+TGG + chr7_3:30787330-30787349 Msa1100630:CDS 45.0%
ATCACGGAGCTTCAAAGGAT+GGG + chr7_3:30787331-30787350 Msa1100630:CDS 45.0%
GAGCTTCAAAGGATGGGAAT+AGG + chr7_3:30787337-30787356 Msa1100630:CDS 45.0%
CCAAAGCTCTTCAATCCATC+AGG - chr7_3:30787571-30787590 None:intergenic 45.0%
!! CCTGATGGATTGAAGAGCTT+TGG + chr7_3:30787568-30787587 Msa1100630:CDS 45.0%
! GAAATGAAGGCATGCTTGGT+TGG + chr7_3:30787674-30787693 Msa1100630:CDS 45.0%
! TGTCCCATGTTTAAGTTCCC+TGG - chr7_3:30787703-30787722 None:intergenic 45.0%
!! ATTAAAAATTAATTAAAAAC+GGG + chr7_3:30785555-30785574 Msa1100630:intron 5.0%
!! ATTTGAAAATATAATTTAAA+AGG + chr7_3:30785597-30785616 Msa1100630:intron 5.0%
ACAAGTGAACAAGGAGCTCG+AGG + chr7_3:30784202-30784221 Msa1100630:CDS 50.0%
CTCGAGGTTTGCACATTGGA+TGG + chr7_3:30784218-30784237 Msa1100630:CDS 50.0%
GTATTCTTGAGCGCCCTCTT+TGG + chr7_3:30784725-30784744 Msa1100630:intron 50.0%
GGCATTAGTGAACCAAGGGT+TGG + chr7_3:30785173-30785192 Msa1100630:intron 50.0%
ATGCTAGAGTTGCCAACCCT+TGG - chr7_3:30785188-30785207 None:intergenic 50.0%
ACAATGTGAGCAAGTGGACG+GGG + chr7_3:30785280-30785299 Msa1100630:CDS 50.0%
CTAGGAAAAGGGTTTCCAGC+AGG - chr7_3:30786401-30786420 None:intergenic 50.0%
! CTGCTGGAAACCCTTTTCCT+AGG + chr7_3:30786399-30786418 Msa1100630:CDS 50.0%
!! TGTGGAACAAGGTGCTGCAA+TGG + chr7_3:30787171-30787190 Msa1100630:CDS 50.0%
ACATGCTTGCAGGAGGGATA+TGG - chr7_3:30787216-30787235 None:intergenic 50.0%
AGCTTGACATGCTTGCAGGA+GGG - chr7_3:30787222-30787241 None:intergenic 50.0%
AAGCTTGACATGCTTGCAGG+AGG - chr7_3:30787223-30787242 None:intergenic 50.0%
GCATGCTTGGTTGGATTCCA+GGG + chr7_3:30787683-30787702 Msa1100630:CDS 50.0%
GGAGCTCGAGGTTTGCACAT+TGG + chr7_3:30784214-30784233 Msa1100630:CDS 55.0%
CCAGTTCTCTCTCGAACAGC+AGG - chr7_3:30784266-30784285 None:intergenic 55.0%
CCTGCTGTTCGAGAGAGAAC+TGG + chr7_3:30784263-30784282 Msa1100630:CDS 55.0%
AGGGACGCCTCTTTAGCACA+AGG - chr7_3:30784755-30784774 None:intergenic 55.0%
! TGGTTCTGCTGCCCTAGCAT+TGG + chr7_3:30786334-30786353 Msa1100630:CDS 55.0%
GGCATGCTTGGTTGGATTCC+AGG + chr7_3:30787682-30787701 Msa1100630:CDS 55.0%
! CTGCAGTGAGTGCTGCTAAG+AGG - chr7_3:30787744-30787763 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 30784194 30787873 30784194 ID=Msa1100630;Name=Msa1100630
chr7_3 mRNA 30784194 30787873 30784194 ID=Msa1100630-mRNA-1;Parent=Msa1100630;Name=Msa1100630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.25|1|1|1|4|0|538
chr7_3 exon 30784194 30784314 30784194 ID=Msa1100630-mRNA-1:exon:6493;Parent=Msa1100630-mRNA-1
chr7_3 exon 30785181 30785398 30785181 ID=Msa1100630-mRNA-1:exon:6494;Parent=Msa1100630-mRNA-1
chr7_3 exon 30785996 30786552 30785996 ID=Msa1100630-mRNA-1:exon:6495;Parent=Msa1100630-mRNA-1
chr7_3 exon 30787153 30787873 30787153 ID=Msa1100630-mRNA-1:exon:6496;Parent=Msa1100630-mRNA-1
chr7_3 CDS 30784194 30784314 30784194 ID=Msa1100630-mRNA-1:cds;Parent=Msa1100630-mRNA-1
chr7_3 CDS 30785181 30785398 30785181 ID=Msa1100630-mRNA-1:cds;Parent=Msa1100630-mRNA-1
chr7_3 CDS 30785996 30786552 30785996 ID=Msa1100630-mRNA-1:cds;Parent=Msa1100630-mRNA-1
chr7_3 CDS 30787153 30787873 30787153 ID=Msa1100630-mRNA-1:cds;Parent=Msa1100630-mRNA-1
Gene Sequence

>Msa1100630

ATGGAGAAACAAGTGAACAAGGAGCTCGAGGTTTGCACATTGGATGGATCTATTGATAGACACGGTCATCCTGCTGTTCGAGAGAGAACTGGAACTTGGTTTGCAGGGATTTTGATTTTAGTGAACCAAGGGTTGGCAACTCTAGCATTTTTTGGTGTGGGAGTGAATCTGGTACTATTTTTGACAAGAGTGATGGGTCAAGATAATGCTGATGCTGCAAACAATGTGAGCAAGTGGACGGGGACAGTTTACATCTTCTCTCTTCTTGGAGCTTTCCTTAGTGACTCTTATTGGGGAAGATACATCACTTGTGCCATTTTCCAAGTCATCTTTGTGATTGGTTTGGTGGCATTATCATTGACATCTTACATATTCCTATTGAAGCCAAATGGTTGTGGGTCCAAAGAATTACCTTGTGGATCACATTCATCATATGAAACAACTTTATTCTATGTATCCATTTATCTAGTAGCCTTAGGAAATGGAGGATATCAACCTAACATTGCTACATTTGGTGCTGATCAATTTGATGAAAGTGACCCTAGTGAACAACACTCAAAAATAGCATTTTTTAGCTATTTTTATTTGGCTTTGAACATTGGATCACTCTTCTCAAACACCATATTGGACTATTTTGAAGATGAGGGACTATGGACTTTGGGATTTTGTGTATCAGCTGGTTCTGCTGCCCTAGCATTGGTTTTGTTTCTTTGTGGCACATCAAAATATAGATACTTTAAACCTGCTGGAAACCCTTTTCCTAGGTTTTGTCAAGTTTTTGTTGCAGCAATAAGAAAATGGAAGGTCAAAATGTTAGAAGGCGAAGATAAACTTTATGAGGTTGAAGAGTGTTTATCTAATGGAGGGAGAAAAATGTACCACACACAAGGATTTAGTCAAATGGCATCACTCTTTGTGGAACAAGGTGCTGCAATGGAGACTAAAATTTCCAATTTCCATATCCCTCCTGCAAGCATGTCAAGCTTTGACATTCTCAGTGTAGTTTCCTTCATCTTCATCTATCGGAGAATTCTCGACCCTCTTGTTGCGAGATTTAAAATGAAATCCAAAGGTATCACGGAGCTTCAAAGGATGGGAATAGGTCTAGTATTATCAATCATAGCAATGGTTTCAGCAGGATTAGTAGAGATTTTCCGGCTAAAGTATGCGATAAAAGAAGAAAAAAATTGTAGCCGTTGTGAAGGGACTAGTTCATTGTCGATATTTTGGCAAGTACCGCAATATGTACTAATAGGAGCATCAGAAGTTTTCATGTATGTTGGTCAATTGGAGTTTTTCAATTCACAAGCACCTGATGGATTGAAGAGCTTTGGAAGTGCACTTTGTATGACTTCAATATCATTAGGAAACTATGTTAGTAGCTTGCTTGTTGCAATTGTGATGAAGATATCTACTAGAAATGAAGGCATGCTTGGTTGGATTCCAGGGAACTTAAACATGGGACATTTGGATAGGTTTTACTTCCTCTTAGCAGCACTCACTGCAGCTGACCTTGTAGTCTATATTGCAATGGCTAGGTGGTATAAATATGTTAAATTTCAAGGAAACAATATTGAAAAAGAAAACAATGATAAAAATCCAGAGCTTTATGTGTAG
Protein sequence

>Msa1100630

MEKQVNKELEVCTLDGSIDRHGHPAVRERTGTWFAGILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYITCAIFQVIFVIGLVALSLTSYIFLLKPNGCGSKELPCGSHSSYETTLFYVSIYLVALGNGGYQPNIATFGADQFDESDPSEQHSKIAFFSYFYLALNIGSLFSNTILDYFEDEGLWTLGFCVSAGSAALALVLFLCGTSKYRYFKPAGNPFPRFCQVFVAAIRKWKVKMLEGEDKLYEVEECLSNGGRKMYHTQGFSQMASLFVEQGAAMETKISNFHIPPASMSSFDILSVVSFIFIYRRILDPLVARFKMKSKGITELQRMGIGLVLSIIAMVSAGLVEIFRLKYAIKEEKNCSRCEGTSSLSIFWQVPQYVLIGASEVFMYVGQLEFFNSQAPDGLKSFGSALCMTSISLGNYVSSLLVAIVMKISTRNEGMLGWIPGNLNMGHLDRFYFLLAALTAADLVVYIAMARWYKYVKFQGNNIEKENNDKNPELYV*