AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1007090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007090 MtrunA17_Chr7g0217461 97.345 565 15 0 7 571 2 566 0.0 1136
Msa1007090 MtrunA17_Chr4g0054891 72.504 571 145 4 4 571 85 646 0.0 836
Msa1007090 MtrunA17_Chr5g0400371 69.459 573 168 4 2 571 85 653 0.0 801
Msa1007090 MtrunA17_Chr1g0213711 59.895 571 208 8 3 571 1 552 0.0 670
Msa1007090 MtrunA17_Chr7g0214461 60.254 551 204 5 23 571 72 609 0.0 660
Msa1007090 MtrunA17_Chr7g0218851 60.940 553 199 6 23 571 40 579 0.0 647
Msa1007090 MtrunA17_Chr4g0011471 53.571 532 237 4 43 571 30 554 0.0 548
Msa1007090 MtrunA17_Chr4g0011041 46.181 576 299 5 1 571 7 576 3.85e-178 515
Msa1007090 MtrunA17_Chr8g0375311 43.816 566 309 5 8 571 19 577 2.92e-169 493
Msa1007090 MtrunA17_Chr7g0241741 46.372 565 289 6 10 571 3 556 3.98e-168 489
Msa1007090 MtrunA17_Chr8g0375291 44.425 565 305 5 8 570 19 576 5.05e-166 484
Msa1007090 MtrunA17_Chr4g0005901 45.122 574 299 9 2 571 5 566 9.88e-165 481
Msa1007090 MtrunA17_Chr3g0104011 45.150 567 297 10 9 571 2 558 1.58e-164 480
Msa1007090 MtrunA17_Chr8g0375351 42.755 559 311 5 15 571 26 577 5.28e-157 461
Msa1007090 MtrunA17_Chr8g0375341 41.682 559 317 5 15 571 26 577 1.82e-154 455
Msa1007090 MtrunA17_Chr8g0375321 40.280 571 331 7 3 571 12 574 1.75e-150 444
Msa1007090 MtrunA17_Chr8g0375361 43.608 571 305 7 7 571 17 576 1.84e-146 434
Msa1007090 MtrunA17_Chr8g0375331 40.250 559 325 5 15 571 10 561 2.13e-146 434
Msa1007090 MtrunA17_Chr3g0142101 39.543 569 318 8 8 570 12 560 2.32e-143 426
Msa1007090 MtrunA17_Chr7g0261811 37.699 565 335 6 12 571 10 562 5.09e-139 416
Msa1007090 MtrunA17_Chr3g0142091 38.596 570 328 6 5 570 2 553 7.35e-139 415
Msa1007090 MtrunA17_Chr7g0261771 37.347 573 342 6 4 571 6 566 1.28e-138 415
Msa1007090 MtrunA17_Chr7g0261881 36.814 565 340 6 12 571 10 562 4.17e-137 411
Msa1007090 MtrunA17_Chr1g0187241 37.699 565 335 6 12 571 9 561 2.45e-135 406
Msa1007090 MtrunA17_Chr1g0166791 37.321 560 338 5 15 571 10 559 2.30e-133 401
Msa1007090 MtrunA17_Chr7g0261791 37.986 566 333 6 12 571 12 565 1.84e-132 399
Msa1007090 MtrunA17_Chr5g0399061 39.107 560 321 7 21 571 19 567 2.59e-128 388
Msa1007090 MtrunA17_Chr5g0399071 38.761 565 328 5 15 571 11 565 3.59e-127 385
Msa1007090 MtrunA17_Chr3g0112671 36.590 563 335 6 10 571 14 555 4.89e-125 379
Msa1007090 MtrunA17_Chr7g0240381 36.871 556 331 7 17 571 17 553 2.69e-124 377
Msa1007090 MtrunA17_Chr4g0056431 38.761 565 329 9 15 570 11 567 9.93e-124 376
Msa1007090 MtrunA17_Chr1g0166741 35.963 545 329 5 15 556 13 540 2.58e-123 375
Msa1007090 MtrunA17_Chr1g0166711 35.714 560 346 5 15 571 11 559 1.75e-121 370
Msa1007090 MtrunA17_Chr4g0008651 35.971 556 342 6 17 571 22 564 3.12e-121 370
Msa1007090 MtrunA17_Chr7g0261851 37.189 562 336 6 15 571 14 563 1.10e-120 369
Msa1007090 MtrunA17_Chr1g0166771 37.305 512 301 5 50 558 12 506 4.41e-119 363
Msa1007090 MtrunA17_Chr3g0114501 36.412 563 336 8 12 567 5 552 1.98e-117 360
Msa1007090 MtrunA17_Chr3g0077151 37.993 558 302 10 15 566 14 533 2.79e-117 358
Msa1007090 MtrunA17_Chr4g0014791 36.667 570 328 10 5 571 5 544 2.63e-114 351
Msa1007090 MtrunA17_Chr4g0014841 36.667 570 328 11 5 571 5 544 1.12e-113 349
Msa1007090 MtrunA17_Chr5g0439381 37.324 568 327 7 8 570 7 550 1.74e-113 350
Msa1007090 MtrunA17_Chr5g0422881 36.136 559 339 10 20 571 12 559 1.82e-113 350
Msa1007090 MtrunA17_Chr3g0112611 33.625 571 367 6 2 571 5 564 3.34e-113 349
Msa1007090 MtrunA17_Chr4g0014801 36.585 574 325 12 5 571 5 546 5.51e-113 347
Msa1007090 MtrunA17_Chr4g0014871 35.702 563 324 11 16 571 17 548 1.16e-112 347
Msa1007090 MtrunA17_Chr4g0063591 37.828 571 334 9 3 570 1 553 1.92e-112 347
Msa1007090 MtrunA17_Chr4g0014781 36.491 570 331 13 5 571 5 546 5.93e-110 340
Msa1007090 MtrunA17_Chr7g0214731 35.818 550 339 6 31 571 63 607 1.99e-104 328
Msa1007090 MtrunA17_Chr8g0353031 35.624 553 317 7 31 571 20 545 2.36e-103 323
Msa1007090 MtrunA17_Chr2g0284701 33.682 573 368 9 10 571 12 583 1.65e-102 322
Msa1007090 MtrunA17_Chr7g0261661 36.105 457 275 6 120 571 4 448 9.09e-102 317
Msa1007090 MtrunA17_Chr7g0255621 33.577 548 350 9 29 570 20 559 2.19e-101 319
Msa1007090 MtrunA17_Chr2g0276751 34.705 559 337 7 16 571 25 558 4.05e-101 318
Msa1007090 MtrunA17_Chr7g0261751 33.943 492 273 6 4 454 6 486 3.38e-98 308
Msa1007090 MtrunA17_Chr5g0415791 32.616 558 359 8 21 571 25 572 4.47e-97 308
Msa1007090 MtrunA17_Chr1g0193391 32.176 547 347 7 17 559 3 529 1.65e-96 306
Msa1007090 MtrunA17_Chr7g0255601 32.872 578 366 11 2 570 2 566 3.26e-96 305
Msa1007090 MtrunA17_Chr8g0362781 30.880 557 369 6 25 571 26 576 1.44e-95 303
Msa1007090 MtrunA17_Chr4g0059991 32.657 542 359 4 35 571 28 568 1.57e-95 303
Msa1007090 MtrunA17_Chr7g0255611 32.911 553 355 10 20 566 22 564 1.74e-95 303
Msa1007090 MtrunA17_Chr4g0059981 33.883 546 346 7 35 571 37 576 2.02e-95 303
Msa1007090 MtrunA17_Chr4g0069581 35.417 528 319 8 47 571 4 512 4.20e-95 301
Msa1007090 MtrunA17_Chr4g0059971 31.835 556 370 6 21 571 28 579 9.27e-95 301
Msa1007090 MtrunA17_Chr5g0415961 32.931 580 349 10 10 567 2 563 8.59e-93 296
Msa1007090 MtrunA17_Chr1g0166731 35.948 459 280 5 116 571 9 456 1.49e-92 292
Msa1007090 MtrunA17_Chr8g0379971 33.034 557 347 8 16 547 7 562 2.15e-92 295
Msa1007090 MtrunA17_Chr4g0014861 38.642 427 243 9 148 571 13 423 3.41e-92 290
Msa1007090 MtrunA17_Chr7g0271221 32.110 545 346 8 29 570 17 540 1.43e-91 293
Msa1007090 MtrunA17_Chr8g0362711 33.333 567 344 8 18 567 13 562 4.34e-91 291
Msa1007090 MtrunA17_Chr3g0082631 36.322 435 253 6 151 571 30 454 4.98e-89 283
Msa1007090 MtrunA17_Chr3g0133341 32.310 554 348 7 25 570 10 544 1.06e-88 285
Msa1007090 MtrunA17_Chr8g0390331 31.676 543 359 8 28 567 14 547 1.45e-82 269
Msa1007090 MtrunA17_Chr7g0261731 37.243 341 201 3 15 351 17 348 7.10e-82 260
Msa1007090 MtrunA17_Chr1g0157601 31.041 538 351 9 41 571 27 551 5.42e-80 262
Msa1007090 MtrunA17_Chr8g0379991 33.925 563 330 11 47 571 1 559 4.50e-79 259
Msa1007090 MtrunA17_Chr8g0362801 32.468 462 299 7 117 571 1 456 1.07e-77 253
Msa1007090 MtrunA17_Chr6g0451841 33.032 554 313 12 39 571 15 531 4.63e-77 253
Msa1007090 MtrunA17_Chr1g0157611 30.556 576 369 10 3 571 1 552 5.99e-75 248
Msa1007090 MtrunA17_Chr7g0240271 29.242 554 373 7 27 571 22 565 1.48e-73 245
Msa1007090 MtrunA17_Chr4g0060001 30.261 575 374 13 4 566 3 562 5.41e-73 244
Msa1007090 MtrunA17_Chr2g0331521 30.142 564 380 11 11 567 1 557 2.50e-72 242
Msa1007090 MtrunA17_Chr3g0142111 38.961 308 181 4 5 307 20 325 3.31e-72 234
Msa1007090 MtrunA17_Chr1g0157621 30.435 529 347 11 50 571 1 515 7.79e-72 240
Msa1007090 MtrunA17_Chr4g0003761 30.387 543 341 12 41 567 42 563 2.96e-71 239
Msa1007090 MtrunA17_Chr2g0331511 28.850 565 389 10 7 567 1 556 5.02e-70 237
Msa1007090 MtrunA17_Chr2g0331481 29.553 582 367 13 7 567 1 560 1.33e-69 236
Msa1007090 MtrunA17_Chr2g0331471 29.352 586 368 14 4 567 62 623 3.88e-69 236
Msa1007090 MtrunA17_Chr5g0415841 29.712 451 298 7 117 558 1 441 1.14e-68 229
Msa1007090 MtrunA17_Chr1g0177591 29.545 572 361 16 4 567 21 558 6.65e-67 227
Msa1007090 MtrunA17_Chr1g0147631 28.624 545 376 8 29 569 25 560 7.56e-66 225
Msa1007090 MtrunA17_Chr2g0325951 29.701 569 352 13 16 567 1 538 1.64e-65 223
Msa1007090 MtrunA17_Chr7g0240281 29.422 554 374 7 27 571 22 567 2.39e-64 221
Msa1007090 MtrunA17_Chr7g0235521 30.531 452 295 7 129 571 13 454 8.91e-64 216
Msa1007090 MtrunA17_Chr2g0325961 29.825 570 351 11 16 567 1 539 1.31e-63 218
Msa1007090 MtrunA17_Chr7g0240131 30.531 452 295 7 129 571 13 454 3.34e-63 215
Msa1007090 MtrunA17_Chr7g0240211 30.310 452 296 7 129 571 13 454 1.24e-62 213
Msa1007090 MtrunA17_Chr7g0240181 30.310 452 296 7 129 571 13 454 1.25e-62 213
Msa1007090 MtrunA17_Chr2g0326211 29.250 547 350 9 30 567 20 538 3.76e-61 211
Msa1007090 MtrunA17_Chr3g0112631 37.956 274 158 5 301 571 3 267 9.98e-59 197
Msa1007090 MtrunA17_Chr2g0331461 28.819 576 379 14 7 567 1 560 1.23e-57 204
Msa1007090 MtrunA17_Chr1g0177611 30.698 430 275 9 143 567 18 429 6.68e-57 197
Msa1007090 MtrunA17_Chr3g0142121 39.259 270 145 5 302 570 11 262 9.48e-57 192
Msa1007090 MtrunA17_Chr7g0240151 29.646 452 281 8 129 571 13 436 1.09e-56 197
Msa1007090 MtrunA17_Chr1g0177631 30.374 428 275 9 145 567 20 429 6.02e-54 189
Msa1007090 MtrunA17_Chr7g0234151 32.710 428 250 11 146 571 25 416 6.02e-50 177
Msa1007090 MtrunA17_Chr7g0234381 32.028 434 257 11 140 571 19 416 9.49e-48 172
Msa1007090 MtrunA17_Chr7g0234181 30.963 436 259 11 140 571 14 411 1.64e-46 168
Msa1007090 MtrunA17_Chr4g0060071 34.307 274 161 7 297 567 32 289 8.77e-44 158
Msa1007090 MtrunA17_Chr7g0261721 37.755 196 119 2 376 571 4 196 3.44e-38 140
Msa1007090 MtrunA17_Chr3g0112651 33.690 187 120 2 116 302 21 203 1.92e-29 115
Msa1007090 MtrunA17_Chr7g0261831 36.025 161 90 4 260 416 3 154 1.17e-25 105
Msa1007090 MtrunA17_Chr4g0060061 37.190 121 76 0 135 255 2 122 5.08e-21 89.4
Msa1007090 MtrunA17_Chr1g0147591 25.758 198 140 2 152 346 3 196 9.23e-21 90.5
Msa1007090 MtrunA17_Chr7g0261671 36.364 110 70 0 4 113 7 116 4.22e-19 83.2
Msa1007090 MtrunA17_Chr4g0014851 38.000 100 62 0 16 115 17 116 2.07e-18 82.8
Msa1007090 MtrunA17_Chr1g0166721 34.653 101 66 0 15 115 11 111 7.60e-18 80.9
Msa1007090 MtrunA17_Chr3g0112661 40.230 87 52 0 17 103 19 105 1.04e-17 80.1
Msa1007090 MtrunA17_Chr2g0326221 27.586 232 135 5 337 567 15 214 7.14e-16 77.0
Msa1007090 MtrunA17_Chr3g0082621 43.077 65 37 0 51 115 8 72 4.51e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1007090 AT1G32450.1 70.017 577 160 6 1 571 10 579 0.0 815
Msa1007090 AT4G21680.1 69.983 573 163 6 3 571 1 568 0.0 788
Msa1007090 AT5G19640.1 62.362 542 180 5 32 571 60 579 0.0 666
Msa1007090 AT3G54140.1 44.523 566 302 7 9 571 2 558 1.56e-171 498
Msa1007090 AT3G54140.2 44.523 566 302 7 9 571 2 558 1.56e-171 498
Msa1007090 AT2G02040.1 42.655 565 315 5 4 566 14 571 5.00e-163 477
Msa1007090 AT5G01180.2 42.606 568 313 7 7 571 1 558 1.23e-158 465
Msa1007090 AT5G01180.3 42.606 568 313 7 7 571 1 558 1.23e-158 465
Msa1007090 AT5G01180.1 42.606 568 313 7 7 571 1 558 1.23e-158 465
Msa1007090 AT1G62200.1 41.828 569 312 6 4 566 22 577 3.90e-156 460
Msa1007090 AT1G62200.2 39.967 598 311 7 4 566 22 606 3.57e-150 446
Msa1007090 AT1G62200.3 39.967 598 311 7 4 566 36 620 5.39e-150 446
Msa1007090 AT2G02020.1 39.753 566 293 6 4 567 15 534 1.21e-143 426
Msa1007090 AT2G02020.2 37.102 566 287 9 4 567 15 513 1.29e-123 374
Msa1007090 AT2G26690.1 39.286 560 321 8 15 570 8 552 2.79e-123 375
Msa1007090 AT2G37900.1 35.252 556 343 6 16 571 23 561 2.44e-121 370
Msa1007090 AT5G46050.1 36.447 546 331 7 15 556 11 544 6.28e-120 367
Msa1007090 AT3G54450.1 36.462 554 316 10 28 570 8 536 1.39e-119 365
Msa1007090 AT3G53960.1 35.009 557 349 5 16 570 22 567 3.23e-118 363
Msa1007090 AT5G46040.1 35.531 546 336 7 15 556 11 544 1.51e-116 358
Msa1007090 AT2G26690.2 39.810 525 297 8 50 570 10 519 9.06e-116 354
Msa1007090 AT2G26690.3 39.923 521 294 8 54 570 2 507 2.03e-115 353
Msa1007090 AT1G12110.1 36.738 558 336 6 21 571 17 564 3.35e-114 352
Msa1007090 AT3G21670.1 36.814 565 322 10 17 570 12 552 4.74e-110 341
Msa1007090 AT2G40460.1 35.512 566 337 10 12 570 5 549 1.26e-108 337
Msa1007090 AT5G13400.1 36.007 561 344 8 20 571 52 606 5.79e-108 337
Msa1007090 AT1G22540.1 37.230 556 320 9 19 571 18 547 1.97e-107 333
Msa1007090 AT1G68570.1 36.607 560 331 10 23 571 17 563 3.22e-107 334
Msa1007090 AT1G68570.2 37.106 539 317 9 44 571 6 533 1.21e-106 332
Msa1007090 AT2G37900.2 34.940 498 307 6 74 571 2 482 2.94e-105 326
Msa1007090 AT1G72140.1 34.164 562 325 9 19 571 22 547 3.42e-105 327
Msa1007090 AT1G69870.1 34.124 548 351 6 28 571 48 589 1.33e-103 325
Msa1007090 AT1G59740.1 33.846 585 357 10 2 571 3 572 3.09e-102 321
Msa1007090 AT1G72130.1 37.297 555 300 12 23 571 16 528 1.23e-99 313
Msa1007090 AT1G22550.1 35.325 569 328 12 15 571 14 554 3.08e-98 310
Msa1007090 AT1G72125.1 35.484 558 332 11 19 571 17 551 4.89e-97 306
Msa1007090 AT1G72120.1 34.588 558 333 10 19 571 17 547 2.31e-96 305
Msa1007090 AT5G46050.2 36.937 444 264 7 117 556 1 432 1.10e-93 295
Msa1007090 AT1G22570.1 33.034 557 338 10 10 554 5 538 2.19e-93 297
Msa1007090 AT1G33440.1 35.524 563 334 9 17 571 24 565 6.82e-93 297
Msa1007090 AT1G18880.1 32.418 546 353 9 35 571 23 561 1.83e-90 290
Msa1007090 AT1G22570.2 33.398 512 310 9 51 554 13 501 1.03e-87 281
Msa1007090 AT1G69850.1 32.168 572 369 7 10 567 4 570 1.19e-87 283
Msa1007090 AT5G62680.1 31.308 543 365 6 35 571 47 587 7.27e-87 281
Msa1007090 AT5G14940.1 32.092 564 330 11 29 571 5 536 1.75e-86 279
Msa1007090 AT1G27080.1 33.026 542 344 8 29 566 12 538 2.51e-85 276
Msa1007090 AT1G27040.2 31.851 562 368 5 12 571 4 552 5.38e-83 270
Msa1007090 AT1G27040.1 31.690 568 373 5 6 571 2 556 5.58e-83 270
Msa1007090 AT3G47960.1 30.387 543 368 7 35 571 65 603 2.67e-81 267
Msa1007090 AT5G62730.1 29.706 579 359 10 5 567 30 576 6.71e-81 265
Msa1007090 AT1G27080.2 32.877 511 324 8 60 566 1 496 3.02e-79 259
Msa1007090 AT1G72130.2 36.902 439 235 9 143 571 4 410 3.31e-79 256
Msa1007090 AT1G72130.3 36.902 439 235 9 143 571 4 410 3.31e-79 256
Msa1007090 AT1G27040.3 32.258 527 342 5 47 571 11 524 8.35e-79 258
Msa1007090 AT3G01350.1 30.755 556 336 8 40 571 16 546 6.95e-76 251
Msa1007090 AT5G62730.2 29.982 547 335 10 37 567 3 517 4.39e-75 248
Msa1007090 AT3G16180.1 29.295 553 372 11 25 567 16 559 2.69e-74 248
Msa1007090 AT1G52190.1 28.439 538 366 9 41 567 31 560 4.57e-74 248
Msa1007090 AT3G25260.1 28.261 552 346 9 21 571 11 513 9.78e-70 234
Msa1007090 AT3G45710.1 27.664 535 361 7 22 555 14 523 8.20e-67 227
Msa1007090 AT3G45650.1 28.154 547 357 10 15 555 6 522 9.47e-67 227
Msa1007090 AT1G69860.1 29.575 541 359 6 35 571 22 544 2.17e-66 226
Msa1007090 AT3G45680.1 27.860 542 360 9 17 555 8 521 1.53e-65 224
Msa1007090 AT5G28470.2 27.190 548 381 8 25 566 11 546 3.65e-65 223
Msa1007090 AT3G45720.1 27.723 505 337 9 53 555 41 519 8.41e-65 221
Msa1007090 AT5G28470.1 27.007 548 380 9 25 566 11 544 3.70e-62 214
Msa1007090 AT3G45660.1 28.460 513 331 10 49 555 39 521 3.82e-62 214
Msa1007090 AT3G45660.3 28.460 513 331 10 49 555 39 521 3.82e-62 214
Msa1007090 AT3G45660.2 28.460 513 331 10 49 555 60 542 5.71e-62 214
Msa1007090 AT3G45650.2 27.051 573 356 11 15 555 6 548 6.90e-62 214
Msa1007090 AT3G45700.1 26.103 544 367 10 21 562 8 518 8.96e-59 205
Msa1007090 AT3G25280.1 26.724 580 353 17 3 571 1 519 2.24e-55 195
Msa1007090 AT3G45690.1 25.882 510 310 11 49 555 36 480 1.30e-49 179
Msa1007090 AT2G38100.2 24.272 515 344 11 59 566 2 477 5.52e-33 132
Msa1007090 AT2G38100.3 24.381 525 350 12 49 566 15 499 9.84e-33 132
Msa1007090 AT2G38100.1 24.381 525 350 12 49 566 9 493 9.98e-33 132
Msa1007090 AT5G11570.1 28.627 255 167 4 315 567 229 470 1.95e-26 113
Msa1007090 AT5G11570.1 31.944 216 140 4 41 253 23 234 3.70e-24 106

Find 112 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATCTGCTTTAAATCTTT+TGG 0.175899 7_1:-6421637 None:intergenic
GTTTACATCTTCTCTCTTCT+TGG 0.208407 7_1:+6419930 Msa1007090:CDS
CTAGTTCATTGTCGATATTT+TGG 0.229657 7_1:+6422088 Msa1007090:CDS
TATTAAGATTACTTCCAATT+TGG 0.232752 7_1:+6421722 Msa1007090:CDS
CTTTCCTTAGTGACTCTTAT+TGG 0.253324 7_1:+6419955 Msa1007090:CDS
CACAAAGATGACTTGGAAAA+TGG 0.258789 7_1:-6419997 None:intergenic
AATATAGTGCATAGCCAAAT+TGG 0.266451 7_1:-6421736 None:intergenic
TTTCCTTAGTGACTCTTATT+GGG 0.266964 7_1:+6419956 Msa1007090:CDS
TGTACCACACACAAGGATTT+AGG 0.290459 7_1:+6421155 Msa1007090:CDS
TCCTAAGGCTACTAGATAAA+TGG 0.292386 7_1:-6420738 None:intergenic
ATAAATATTTCAGGACAAAA+TGG 0.312133 7_1:+6418800 None:intergenic
TGCAGGAGGGATATGAAAAT+TGG 0.324134 7_1:-6421830 None:intergenic
GAACTTAAACATGGGACATT+TGG 0.326049 7_1:+6422329 Msa1007090:CDS
TGATCCACAAGGTAATTCTT+TGG 0.330246 7_1:-6420681 None:intergenic
GGCATGCTTGGTTGGATTCC+AGG 0.333777 7_1:+6422306 Msa1007090:CDS
AGAACTGGAACTTGGTTTGC+AGG 0.334798 7_1:+6418903 Msa1007090:CDS
TGTATGACTTCAATATCATT+AGG 0.345321 7_1:+6422225 Msa1007090:CDS
CTACTTGTGTCACAGTTGAT+AGG 0.345592 7_1:-6421684 None:intergenic
GTTGAAGAGTGTTTATCTAA+TGG 0.346259 7_1:+6421121 Msa1007090:CDS
CAACCTAACATTGCTACATT+TGG 0.350494 7_1:+6420773 Msa1007090:CDS
TTGAAGCTCCGTGATACCTT+TGG 0.354351 7_1:-6421947 None:intergenic
GTACCGCAATATGTACTAAT+AGG 0.359209 7_1:+6422114 Msa1007090:CDS
TCAAAGCTTGACATGCTTGC+AGG 0.361856 7_1:-6421847 None:intergenic
TTTCATGTATGTTGGTCAAT+TGG 0.368808 7_1:+6422149 Msa1007090:CDS
ACTCTTCTCAAACACCATAT+TGG 0.370740 7_1:+6420886 Msa1007090:CDS
CCTGATGGATTGAAGAGCTT+TGG 0.373551 7_1:+6422192 Msa1007090:CDS
ATCTTCAAAATAGTCCAATA+TGG 0.384719 7_1:-6420900 None:intergenic
TTGTTGCAGCAATAAGAAAA+TGG 0.394125 7_1:+6421059 Msa1007090:CDS
GATGAGGGACTATGGACTTT+GGG 0.398437 7_1:+6420920 Msa1007090:CDS
GCACCAAATGTAGCAATGTT+AGG 0.407357 7_1:-6420776 None:intergenic
CTCTGTGGTCTTCAGTCAAA+TGG 0.426560 7_1:+6421762 Msa1007090:CDS
CACAACCATTTGGCTTCAAT+AGG 0.430672 7_1:-6420655 None:intergenic
TGTCCCATGTTTAAGTTCCC+TGG 0.431807 7_1:-6422324 None:intergenic
TCTTTGGACCCACAACCATT+TGG 0.432330 7_1:-6420665 None:intergenic
TTCGAGAGAGAACTGGAACT+TGG 0.433022 7_1:+6418895 Msa1007090:CDS
TATAGATACTTTAAACCTGC+TGG 0.434208 7_1:+6421007 Msa1007090:CDS
TATCTAGTAGCCTTAGGAAA+TGG 0.436717 7_1:+6420743 Msa1007090:CDS
CCTGCTGTTCGAGAGAGAAC+TGG 0.440510 7_1:+6418888 Msa1007090:CDS
CTCGAGGTTTGCACATTGGA+TGG 0.444437 7_1:+6418843 Msa1007090:CDS
AGATGAGGGACTATGGACTT+TGG 0.448427 7_1:+6420919 Msa1007090:CDS
TCAAATGGCATCACTCTTTG+TGG 0.451020 7_1:+6421777 Msa1007090:CDS
CCAAAGCTCTTCAATCCATC+AGG 0.464327 7_1:-6422192 None:intergenic
TGGTTCTGCTGCCCTAGCAT+TGG 0.467038 7_1:+6420958 Msa1007090:CDS
AGGCGAAGATAAACTTTATG+AGG 0.468002 7_1:+6421099 Msa1007090:CDS
CTATTGAAGCCAAATGGTTG+TGG 0.473171 7_1:+6420656 Msa1007090:CDS
AAGATATCAACTAGAAATGA+AGG 0.473301 7_1:+6422285 Msa1007090:CDS
CTGCAGTGAGTGCTGCTAAG+AGG 0.473539 7_1:-6422365 None:intergenic
CCAGTTCTCTCTCGAACAGC+AGG 0.474623 7_1:-6418888 None:intergenic
GAAGAGTGTTTATCTAATGG+AGG 0.475298 7_1:+6421124 Msa1007090:CDS
CTGCTGGAAACCCTCTTCCT+AGG 0.482735 7_1:+6421023 Msa1007090:CDS
TTTCCTTCATCTTCATCTAT+CGG 0.483360 7_1:+6421884 Msa1007090:CDS
ATATTCCTATTGAAGCCAAA+TGG 0.485401 7_1:+6420650 Msa1007090:CDS
ACCAAAAGATTTAAAGCAGA+TGG 0.486800 7_1:+6421636 Msa1007090:CDS
ATGCTAGAGTTGCCAACCCT+TGG 0.487154 7_1:-6419809 None:intergenic
AACAATGTGAGCAAGTGGAC+AGG 0.488294 7_1:+6419903 Msa1007090:CDS
TCCATTTATCTAGTAGCCTT+AGG 0.491646 7_1:+6420737 Msa1007090:CDS
ATCATAGCAATGGTTTCAGC+AGG 0.494050 7_1:+6421997 Msa1007090:CDS
ACTAGAAATGAAGGCATGCT+TGG 0.498208 7_1:+6422294 Msa1007090:CDS
GAAATGAAGGCATGCTTGGT+TGG 0.507707 7_1:+6422298 Msa1007090:CDS
GGCATTAGTGAACCAAGGGT+TGG 0.509768 7_1:+6419797 Msa1007090:intron
TATTGAAGCCAAATGGTTGT+GGG 0.515070 7_1:+6420657 Msa1007090:CDS
CTAGGAAGAGGGTTTCCAGC+AGG 0.518077 7_1:-6421022 None:intergenic
TTCTATGTGACAGGGTTTGG+TGG 0.518870 7_1:+6420607 Msa1007090:intron
AAGGTATCACGGAGCTTCAA+AGG 0.520249 7_1:+6421950 Msa1007090:CDS
TTCCCCAATAAGAGTCACTA+AGG 0.520883 7_1:-6419959 None:intergenic
TTGATATCCTCCATTTCCTA+AGG 0.525360 7_1:-6420753 None:intergenic
AAAGAAACAAAACCAATGCT+AGG 0.529942 7_1:-6420970 None:intergenic
GCATGCTTGGTTGGATTCCA+GGG 0.534078 7_1:+6422307 Msa1007090:CDS
GAACTGGAACTTGGTTTGCA+GGG 0.535045 7_1:+6418904 Msa1007090:CDS
TTCAATTCACAAGCACCTGA+TGG 0.536588 7_1:+6422177 Msa1007090:CDS
GAGCTTCAAAGGATGGGAAT+CGG 0.537511 7_1:+6421961 Msa1007090:CDS
GGAGCTCGAGGTTTGCACAT+TGG 0.540921 7_1:+6418839 Msa1007090:CDS
CCATTGCAATATAGACTACA+AGG 0.541318 7_1:-6422392 None:intergenic
ACTTGACAAAACCTAGGAAG+AGG 0.545629 7_1:-6421034 None:intergenic
TAAACATGGGACATTTGGAT+AGG 0.549379 7_1:+6422334 Msa1007090:CDS
TTACAATCACAAAGATGACT+TGG 0.555708 7_1:-6420004 None:intergenic
TATCACGGAGCTTCAAAGGA+TGG 0.559645 7_1:+6421954 Msa1007090:CDS
GCATCACTCTTTGTGGAACA+AGG 0.563672 7_1:+6421784 Msa1007090:CDS
AGTATTAGCAATCATAGCAA+TGG 0.565482 7_1:+6421987 Msa1007090:CDS
ATCACGGAGCTTCAAAGGAT+GGG 0.566161 7_1:+6421955 Msa1007090:CDS
TTCCTTAGTGACTCTTATTG+GGG 0.567551 7_1:+6419957 Msa1007090:CDS
TCTCCGATAGATGAAGATGA+AGG 0.574939 7_1:-6421887 None:intergenic
ATTCCAGGGAACTTAAACAT+GGG 0.577247 7_1:+6422321 Msa1007090:CDS
AATGAAATCCAAAGGTATCA+CGG 0.577592 7_1:+6421939 Msa1007090:CDS
AAGAAAATAAATGCAGTCCA+TGG 0.582775 7_1:+6421659 Msa1007090:CDS
AAGAGTGTTTATCTAATGGA+GGG 0.586747 7_1:+6421125 Msa1007090:CDS
CTTGACAAAACCTAGGAAGA+GGG 0.589955 7_1:-6421033 None:intergenic
CTGCAAACAATGTGAGCAAG+TGG 0.589984 7_1:+6419898 Msa1007090:CDS
CTAGTAGCCTTAGGAAATGG+AGG 0.594221 7_1:+6420746 Msa1007090:CDS
TGTGGAACAAGGTGCTGCAA+TGG 0.595250 7_1:+6421795 Msa1007090:CDS
CCTTGTAGTCTATATTGCAA+TGG 0.597420 7_1:+6422392 Msa1007090:CDS
AAGCTTGACATGCTTGCAGG+AGG 0.599138 7_1:-6421844 None:intergenic
TGCAGCAATAAGAAAATGGA+AGG 0.599680 7_1:+6421063 Msa1007090:CDS
AGCTTGACATGCTTGCAGGA+GGG 0.603779 7_1:-6421843 None:intergenic
AAGAAACAAAACCAATGCTA+GGG 0.607762 7_1:-6420969 None:intergenic
GATTCCAGGGAACTTAAACA+TGG 0.610003 7_1:+6422320 Msa1007090:CDS
AAAATTGTAGCCGTTGCGAA+GGG 0.612540 7_1:+6422064 Msa1007090:CDS
TGGAAGGTCAAAATGTTCGA+AGG 0.623695 7_1:+6421079 Msa1007090:CDS
TAGTCTATATTGCAATGGCT+AGG 0.624517 7_1:+6422397 Msa1007090:CDS
ATGCACTATATTATTCTCTG+TGG 0.626107 7_1:+6421747 Msa1007090:CDS
ACAAGTGAACAAGGAGCTCG+AGG 0.633588 7_1:+6418827 Msa1007090:CDS
ACAATGTGAGCAAGTGGACA+GGG 0.634092 7_1:+6419904 Msa1007090:CDS
GGGTCCAAAGAATTACCTTG+TGG 0.636025 7_1:+6420677 Msa1007090:CDS
ATGAACTAGTCCCTTCGCAA+CGG 0.647000 7_1:-6422074 None:intergenic
GTCACAGTTGATAGGAACCA+TGG 0.647390 7_1:-6421676 None:intergenic
AGATTTAAAATGAAATCCAA+AGG 0.648112 7_1:+6421931 Msa1007090:CDS
AATGGAGAAACAAGTGAACA+AGG 0.649738 7_1:+6418818 Msa1007090:CDS
TCTATATTGCAATGGCTAGG+TGG 0.651956 7_1:+6422400 Msa1007090:CDS
GCTCCTATTAGTACATATTG+CGG 0.670504 7_1:-6422117 None:intergenic
CTTACCTAAATCCTTGTGTG+TGG 0.675525 7_1:-6421159 None:intergenic
TATGATGAATGTGATCCACA+AGG 0.710482 7_1:-6420692 None:intergenic
GATGGATCTATTGATAGACA+CGG 0.738265 7_1:+6418861 Msa1007090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAATTAATTAAAAA+CGG + chr7_1:6420178-6420197 Msa1007090:intron 0.0%
!!! TTAAAACTTTTAAAACATAA+AGG - chr7_1:6419586-6419605 None:intergenic 10.0%
!! AAACAAAAAAAAAACAATAT+GGG + chr7_1:6419435-6419454 Msa1007090:intron 10.0%
!!! TATTAATTAATGTTGAATTT+TGG + chr7_1:6419776-6419795 Msa1007090:intron 10.0%
!!! TTTCTTTTTTAAACAATATA+TGG - chr7_1:6420472-6420491 None:intergenic 10.0%
!!! ATTTTTTAGCTATTTTTATT+TGG + chr7_1:6420847-6420866 Msa1007090:CDS 10.0%
!! TTTGATTGTTTAAACAATAT+GGG + chr7_1:6419283-6419302 Msa1007090:intron 15.0%
!! CAAACAAAAAAAAAACAATA+TGG + chr7_1:6419434-6419453 Msa1007090:intron 15.0%
!!! ATGTTTTAAAAGTTTTAAGT+TGG - chr7_1:6419186-6419205 None:intergenic 15.0%
!!! CTTAAAACTTTTAAAACATA+AGG + chr7_1:6419585-6419604 Msa1007090:intron 15.0%
!!! TATGTTTTAAGTAATTTTGT+TGG + chr7_1:6420052-6420071 Msa1007090:intron 15.0%
!!! AAATATACCAAATTTTAGTT+TGG - chr7_1:6420248-6420267 None:intergenic 15.0%
!!! TTAAGTTTGACTTTAAAATA+AGG - chr7_1:6420294-6420313 None:intergenic 15.0%
!!! TTATTTTAAAGTCAAACTTA+AGG + chr7_1:6420293-6420312 Msa1007090:intron 15.0%
!! AAGTAAAATACAAACAAATA+TGG + chr7_1:6421244-6421263 Msa1007090:intron 15.0%
!! AAAATGATTAATTGCATGTT+TGG + chr7_1:6419126-6419145 Msa1007090:intron 20.0%
!! CTTTGATTGTTTAAACAATA+TGG + chr7_1:6419282-6419301 Msa1007090:intron 20.0%
!! CAAAATATTACAAAAACAAG+CGG - chr7_1:6419319-6419338 None:intergenic 20.0%
!! TTTGTTTGAAGAAACAAAAT+TGG - chr7_1:6419422-6419441 None:intergenic 20.0%
!! TTTATAAAATTTGTATTCCC+AGG - chr7_1:6419750-6419769 None:intergenic 20.0%
!! TAGCTACTAATTAGAAAAAA+TGG + chr7_1:6420111-6420130 Msa1007090:intron 20.0%
!! AGCTACTAATTAGAAAAAAT+GGG + chr7_1:6420112-6420131 Msa1007090:intron 20.0%
!! TTTAAAAAAGAAAGACATGA+TGG + chr7_1:6420479-6420498 Msa1007090:intron 20.0%
!! TTAAAAAAGAAAGACATGAT+GGG + chr7_1:6420480-6420499 Msa1007090:intron 20.0%
!!! TCATATATAGTTTTAAATCG+AGG - chr7_1:6421341-6421360 None:intergenic 20.0%
!! ATATCATTGTGTTACATATA+CGG - chr7_1:6421371-6421390 None:intergenic 20.0%
!!! GAATTTAAACTAATTTTGCT+AGG + chr7_1:6421587-6421606 Msa1007090:intron 20.0%
!! TATTAAGATTACTTCCAATT+TGG + chr7_1:6421722-6421741 Msa1007090:CDS 20.0%
!!! AGATTTAAAATGAAATCCAA+AGG + chr7_1:6421931-6421950 Msa1007090:CDS 20.0%
!!! ATGTTTTGACAATTTCAAGT+TGG + chr7_1:6419215-6419234 Msa1007090:intron 25.0%
! CAATCAAAGAAAATAAGAGA+CGG - chr7_1:6419271-6419290 None:intergenic 25.0%
! TGTTTAAACAATATGGGTAT+CGG + chr7_1:6419289-6419308 Msa1007090:intron 25.0%
!!! CGCTTGTTTTTGTAATATTT+TGG + chr7_1:6419317-6419336 Msa1007090:intron 25.0%
! AACAATTAAGTCACTATACA+AGG + chr7_1:6419718-6419737 Msa1007090:intron 25.0%
! ACAATTAAGTCACTATACAA+GGG + chr7_1:6419719-6419738 Msa1007090:intron 25.0%
!! ATTAAAAACGGGAAATTTTG+AGG + chr7_1:6420190-6420209 Msa1007090:intron 25.0%
! AAAAGGACCAAACTAAAATT+TGG + chr7_1:6420238-6420257 Msa1007090:intron 25.0%
! GTCTCAGTATTGTTTAAAAA+AGG + chr7_1:6420380-6420399 Msa1007090:intron 25.0%
!! TATTCTCTTTTTATATCCCT+CGG - chr7_1:6420514-6420533 None:intergenic 25.0%
! AGGGATATAAAAAGAGAATA+AGG + chr7_1:6420514-6420533 Msa1007090:intron 25.0%
! GGGATATAAAAAGAGAATAA+GGG + chr7_1:6420515-6420534 Msa1007090:intron 25.0%
! TTAATAATGTTCTATGTGAC+AGG + chr7_1:6420598-6420617 Msa1007090:intron 25.0%
! TAATAATGTTCTATGTGACA+GGG + chr7_1:6420599-6420618 Msa1007090:intron 25.0%
!!! TTTTATTTGGCTTTGAACAT+TGG + chr7_1:6420860-6420879 Msa1007090:CDS 25.0%
! ATCTTCAAAATAGTCCAATA+TGG - chr7_1:6420903-6420922 None:intergenic 25.0%
! GTATATATAGTCAAGATCAT+AGG + chr7_1:6421452-6421471 Msa1007090:intron 25.0%
!! TTGATCGTTATGTTTTGTAT+AGG + chr7_1:6421534-6421553 Msa1007090:intron 25.0%
! TGTATGACTTCAATATCATT+AGG + chr7_1:6422225-6422244 Msa1007090:CDS 25.0%
! AAGATATCAACTAGAAATGA+AGG + chr7_1:6422285-6422304 Msa1007090:CDS 25.0%
!!! TTTGCAGGGATTTTGATTTT+AGG + chr7_1:6418918-6418937 Msa1007090:CDS 30.0%
ACTTAATATTATGTCGCGTA+AGG + chr7_1:6419524-6419543 Msa1007090:intron 30.0%
CTTAATATTATGTCGCGTAA+GGG + chr7_1:6419525-6419544 Msa1007090:intron 30.0%
ACCAATTAAGTCACTATACA+AGG + chr7_1:6419640-6419659 Msa1007090:intron 30.0%
CCAATTAAGTCACTATACAA+GGG + chr7_1:6419641-6419660 Msa1007090:intron 30.0%
ACTATACAAGGGAAATATCT+TGG + chr7_1:6419652-6419671 Msa1007090:intron 30.0%
TTGATATCACTAGAGATGTA+TGG - chr7_1:6419698-6419717 None:intergenic 30.0%
!!! ACTATTTTTGACAAGAGTGA+TGG + chr7_1:6419857-6419876 Msa1007090:CDS 30.0%
!!! CTATTTTTGACAAGAGTGAT+GGG + chr7_1:6419858-6419877 Msa1007090:CDS 30.0%
TTTCCTTAGTGACTCTTATT+GGG + chr7_1:6419956-6419975 Msa1007090:CDS 30.0%
TTACAATCACAAAGATGACT+TGG - chr7_1:6420007-6420026 None:intergenic 30.0%
ACCATATAAAATATGGTCGA+TGG - chr7_1:6420406-6420425 None:intergenic 30.0%
CTCTCACACCATATAAAATA+TGG - chr7_1:6420413-6420432 None:intergenic 30.0%
! ATTTTATATGGTGTGAGAGT+AGG + chr7_1:6420414-6420433 Msa1007090:intron 30.0%
ATATTCCTATTGAAGCCAAA+TGG + chr7_1:6420650-6420669 Msa1007090:CDS 30.0%
!!! TTTTTGAGTGTTGTTCACTA+GGG - chr7_1:6420823-6420842 None:intergenic 30.0%
!!! ATTTTTGAGTGTTGTTCACT+AGG - chr7_1:6420824-6420843 None:intergenic 30.0%
!! ATTGGACTATTTTGAAGATG+AGG + chr7_1:6420904-6420923 Msa1007090:CDS 30.0%
!! TTGGACTATTTTGAAGATGA+GGG + chr7_1:6420905-6420924 Msa1007090:CDS 30.0%
AAGAAACAAAACCAATGCTA+GGG - chr7_1:6420972-6420991 None:intergenic 30.0%
AAAGAAACAAAACCAATGCT+AGG - chr7_1:6420973-6420992 None:intergenic 30.0%
TATAGATACTTTAAACCTGC+TGG + chr7_1:6421007-6421026 Msa1007090:CDS 30.0%
ACAAAAACTTGACAAAACCT+AGG - chr7_1:6421043-6421062 None:intergenic 30.0%
TTGTTGCAGCAATAAGAAAA+TGG + chr7_1:6421059-6421078 Msa1007090:CDS 30.0%
!! GTTGAAGAGTGTTTATCTAA+TGG + chr7_1:6421121-6421140 Msa1007090:CDS 30.0%
!! AAGAGTGTTTATCTAATGGA+GGG + chr7_1:6421125-6421144 Msa1007090:CDS 30.0%
! TGATGATGAAATGTCACTAA+TGG + chr7_1:6421565-6421584 Msa1007090:intron 30.0%
! ACCAAAAGATTTAAAGCAGA+TGG + chr7_1:6421636-6421655 Msa1007090:CDS 30.0%
!! TCCATCTGCTTTAAATCTTT+TGG - chr7_1:6421640-6421659 None:intergenic 30.0%
AAGAAAATAAATGCAGTCCA+TGG + chr7_1:6421659-6421678 Msa1007090:CDS 30.0%
AATATAGTGCATAGCCAAAT+TGG - chr7_1:6421739-6421758 None:intergenic 30.0%
ATGCACTATATTATTCTCTG+TGG + chr7_1:6421747-6421766 Msa1007090:CDS 30.0%
TTTCCTTCATCTTCATCTAT+CGG + chr7_1:6421884-6421903 Msa1007090:CDS 30.0%
! TTTTAAATCTCGCAACAAGA+GGG - chr7_1:6421921-6421940 None:intergenic 30.0%
! ATTTTAAATCTCGCAACAAG+AGG - chr7_1:6421922-6421941 None:intergenic 30.0%
!! AATGAAATCCAAAGGTATCA+CGG + chr7_1:6421939-6421958 Msa1007090:CDS 30.0%
AGTATTAGCAATCATAGCAA+TGG + chr7_1:6421987-6422006 Msa1007090:CDS 30.0%
! CTAGTTCATTGTCGATATTT+TGG + chr7_1:6422088-6422107 Msa1007090:CDS 30.0%
! TCAGAAGTTTTCATGTATGT+TGG + chr7_1:6422141-6422160 Msa1007090:CDS 30.0%
TTTCATGTATGTTGGTCAAT+TGG + chr7_1:6422149-6422168 Msa1007090:CDS 30.0%
AATGGAGAAACAAGTGAACA+AGG + chr7_1:6418818-6418837 Msa1007090:CDS 35.0%
GATGGATCTATTGATAGACA+CGG + chr7_1:6418861-6418880 Msa1007090:CDS 35.0%
! TTCTAACGTGGATAACGTTT+TGG + chr7_1:6419557-6419576 Msa1007090:intron 35.0%
CCCTTGTATAGTGACTTAAT+TGG - chr7_1:6419644-6419663 None:intergenic 35.0%
ACTATACAAGGGAAATACCT+GGG + chr7_1:6419730-6419749 Msa1007090:intron 35.0%
!! ATTTTGGCATTAGTGAACCA+AGG + chr7_1:6419792-6419811 Msa1007090:intron 35.0%
! TTTTGGCATTAGTGAACCAA+GGG + chr7_1:6419793-6419812 Msa1007090:intron 35.0%
!!! TTGGCAACTCTAGCATTTTT+TGG + chr7_1:6419816-6419835 Msa1007090:CDS 35.0%
!!! AACTCTAGCATTTTTTGGTG+TGG + chr7_1:6419821-6419840 Msa1007090:CDS 35.0%
!!! ACTCTAGCATTTTTTGGTGT+GGG + chr7_1:6419822-6419841 Msa1007090:CDS 35.0%
GTTTACATCTTCTCTCTTCT+TGG + chr7_1:6419930-6419949 Msa1007090:CDS 35.0%
CTTTCCTTAGTGACTCTTAT+TGG + chr7_1:6419955-6419974 Msa1007090:CDS 35.0%
TTCCTTAGTGACTCTTATTG+GGG + chr7_1:6419957-6419976 Msa1007090:CDS 35.0%
! CACAAAGATGACTTGGAAAA+TGG - chr7_1:6420000-6420019 None:intergenic 35.0%
ACCATCATACACAATCTGAA+GGG + chr7_1:6420358-6420377 Msa1007090:intron 35.0%
! GCCATCGACCATATTTTATA+TGG + chr7_1:6420402-6420421 Msa1007090:intron 35.0%
! ATGATGGGAAATAAAACCGA+GGG + chr7_1:6420495-6420514 Msa1007090:intron 35.0%
! TTTTCACGAGCACAAAAAGA+TGG - chr7_1:6420578-6420597 None:intergenic 35.0%
TATTGAAGCCAAATGGTTGT+GGG + chr7_1:6420657-6420676 Msa1007090:CDS 35.0%
TGATCCACAAGGTAATTCTT+TGG - chr7_1:6420684-6420703 None:intergenic 35.0%
TATGATGAATGTGATCCACA+AGG - chr7_1:6420695-6420714 None:intergenic 35.0%
TCCATTTATCTAGTAGCCTT+AGG + chr7_1:6420737-6420756 Msa1007090:CDS 35.0%
TCCTAAGGCTACTAGATAAA+TGG - chr7_1:6420741-6420760 None:intergenic 35.0%
! TATCTAGTAGCCTTAGGAAA+TGG + chr7_1:6420743-6420762 Msa1007090:CDS 35.0%
TTGATATCCTCCATTTCCTA+AGG - chr7_1:6420756-6420775 None:intergenic 35.0%
CAACCTAACATTGCTACATT+TGG + chr7_1:6420773-6420792 Msa1007090:CDS 35.0%
ACTCTTCTCAAACACCATAT+TGG + chr7_1:6420886-6420905 Msa1007090:CDS 35.0%
!! ATTTTGAAGATGAGGGACTA+TGG + chr7_1:6420912-6420931 Msa1007090:CDS 35.0%
!!! GCATTGGTTTTGTTTCTTTG+TGG + chr7_1:6420974-6420993 Msa1007090:CDS 35.0%
TGCAGCAATAAGAAAATGGA+AGG + chr7_1:6421063-6421082 Msa1007090:CDS 35.0%
AGGCGAAGATAAACTTTATG+AGG + chr7_1:6421099-6421118 Msa1007090:CDS 35.0%
!! GAAGAGTGTTTATCTAATGG+AGG + chr7_1:6421124-6421143 Msa1007090:CDS 35.0%
AGAAAAATGTACCACACACA+AGG + chr7_1:6421148-6421167 Msa1007090:CDS 35.0%
!! CAGGATTAGTAGAGATTTTC+CGG + chr7_1:6422016-6422035 Msa1007090:CDS 35.0%
! CTTTTATCGCATACTTTAGC+CGG - chr7_1:6422038-6422057 None:intergenic 35.0%
GTACCGCAATATGTACTAAT+AGG + chr7_1:6422114-6422133 Msa1007090:CDS 35.0%
GCTCCTATTAGTACATATTG+CGG - chr7_1:6422120-6422139 None:intergenic 35.0%
ATTCCAGGGAACTTAAACAT+GGG + chr7_1:6422321-6422340 Msa1007090:CDS 35.0%
GAACTTAAACATGGGACATT+TGG + chr7_1:6422329-6422348 Msa1007090:CDS 35.0%
TAAACATGGGACATTTGGAT+AGG + chr7_1:6422334-6422353 Msa1007090:CDS 35.0%
CCATTGCAATATAGACTACA+AGG - chr7_1:6422395-6422414 None:intergenic 35.0%
CCTTGTAGTCTATATTGCAA+TGG + chr7_1:6422392-6422411 Msa1007090:CDS 35.0%
GGGACTAACTTATTCTAACG+TGG + chr7_1:6419545-6419564 Msa1007090:intron 40.0%
CACTATACAAGGGAAATACC+TGG + chr7_1:6419729-6419748 Msa1007090:intron 40.0%
TTCCCCAATAAGAGTCACTA+AGG - chr7_1:6419962-6419981 None:intergenic 40.0%
AGCGTATGAGTGAAAAAGAC+TGG + chr7_1:6420320-6420339 Msa1007090:intron 40.0%
GACCATCATACACAATCTGA+AGG + chr7_1:6420357-6420376 Msa1007090:intron 40.0%
ACCCTTCAGATTGTGTATGA+TGG - chr7_1:6420362-6420381 None:intergenic 40.0%
! CATGATGGGAAATAAAACCG+AGG + chr7_1:6420494-6420513 Msa1007090:intron 40.0%
ATGTTCTATGTGACAGGGTT+TGG + chr7_1:6420604-6420623 Msa1007090:intron 40.0%
! CACAACCATTTGGCTTCAAT+AGG - chr7_1:6420658-6420677 None:intergenic 40.0%
CTATTGAAGCCAAATGGTTG+TGG + chr7_1:6420656-6420675 Msa1007090:CDS 40.0%
GCACCAAATGTAGCAATGTT+AGG - chr7_1:6420779-6420798 None:intergenic 40.0%
! TTGGGATTTTGTGTATCAGC+TGG + chr7_1:6420938-6420957 Msa1007090:CDS 40.0%
CTTGACAAAACCTAGGAAGA+GGG - chr7_1:6421036-6421055 None:intergenic 40.0%
ACTTGACAAAACCTAGGAAG+AGG - chr7_1:6421037-6421056 None:intergenic 40.0%
TGGAAGGTCAAAATGTTCGA+AGG + chr7_1:6421079-6421098 Msa1007090:CDS 40.0%
TGTACCACACACAAGGATTT+AGG + chr7_1:6421155-6421174 Msa1007090:CDS 40.0%
CTTACCTAAATCCTTGTGTG+TGG - chr7_1:6421162-6421181 None:intergenic 40.0%
ACACGCATCACAAATGCAAT+TGG - chr7_1:6421281-6421300 None:intergenic 40.0%
CTACTTGTGTCACAGTTGAT+AGG - chr7_1:6421687-6421706 None:intergenic 40.0%
TCAAATGGCATCACTCTTTG+TGG + chr7_1:6421777-6421796 Msa1007090:CDS 40.0%
TGCAGGAGGGATATGAAAAT+TGG - chr7_1:6421833-6421852 None:intergenic 40.0%
TCTCCGATAGATGAAGATGA+AGG - chr7_1:6421890-6421909 None:intergenic 40.0%
ATCATAGCAATGGTTTCAGC+AGG + chr7_1:6421997-6422016 Msa1007090:CDS 40.0%
AAAAATTGTAGCCGTTGCGA+AGG + chr7_1:6422063-6422082 Msa1007090:CDS 40.0%
AAAATTGTAGCCGTTGCGAA+GGG + chr7_1:6422064-6422083 Msa1007090:CDS 40.0%
TTCAATTCACAAGCACCTGA+TGG + chr7_1:6422177-6422196 Msa1007090:CDS 40.0%
! ACTAGAAATGAAGGCATGCT+TGG + chr7_1:6422294-6422313 Msa1007090:CDS 40.0%
GATTCCAGGGAACTTAAACA+TGG + chr7_1:6422320-6422339 Msa1007090:CDS 40.0%
TTCGAGAGAGAACTGGAACT+TGG + chr7_1:6418895-6418914 Msa1007090:CDS 45.0%
!! AGAACTGGAACTTGGTTTGC+AGG + chr7_1:6418903-6418922 Msa1007090:CDS 45.0%
!! GAACTGGAACTTGGTTTGCA+GGG + chr7_1:6418904-6418923 Msa1007090:CDS 45.0%
AGCACAAGGCATACCAAAGA+GGG - chr7_1:6419366-6419385 None:intergenic 45.0%
TAGCACAAGGCATACCAAAG+AGG - chr7_1:6419367-6419386 None:intergenic 45.0%
TGGTATGCCTTGTGCTAAAG+AGG + chr7_1:6419370-6419389 Msa1007090:intron 45.0%
!! TTTTGGTGTGGGAGTGAATC+TGG + chr7_1:6419833-6419852 Msa1007090:CDS 45.0%
CTGCAAACAATGTGAGCAAG+TGG + chr7_1:6419898-6419917 Msa1007090:CDS 45.0%
AACAATGTGAGCAAGTGGAC+AGG + chr7_1:6419903-6419922 Msa1007090:CDS 45.0%
ACAATGTGAGCAAGTGGACA+GGG + chr7_1:6419904-6419923 Msa1007090:CDS 45.0%
TTCTATGTGACAGGGTTTGG+TGG + chr7_1:6420607-6420626 Msa1007090:intron 45.0%
TCTTTGGACCCACAACCATT+TGG - chr7_1:6420668-6420687 None:intergenic 45.0%
GGGTCCAAAGAATTACCTTG+TGG + chr7_1:6420677-6420696 Msa1007090:CDS 45.0%
! CTAGTAGCCTTAGGAAATGG+AGG + chr7_1:6420746-6420765 Msa1007090:CDS 45.0%
AGATGAGGGACTATGGACTT+TGG + chr7_1:6420919-6420938 Msa1007090:CDS 45.0%
GATGAGGGACTATGGACTTT+GGG + chr7_1:6420920-6420939 Msa1007090:CDS 45.0%
!! GTCACAGTTGATAGGAACCA+TGG - chr7_1:6421679-6421698 None:intergenic 45.0%
CTCTGTGGTCTTCAGTCAAA+TGG + chr7_1:6421762-6421781 Msa1007090:CDS 45.0%
GCATCACTCTTTGTGGAACA+AGG + chr7_1:6421784-6421803 Msa1007090:CDS 45.0%
TCAAAGCTTGACATGCTTGC+AGG - chr7_1:6421850-6421869 None:intergenic 45.0%
TTGAAGCTCCGTGATACCTT+TGG - chr7_1:6421950-6421969 None:intergenic 45.0%
! AAGGTATCACGGAGCTTCAA+AGG + chr7_1:6421950-6421969 Msa1007090:CDS 45.0%
TATCACGGAGCTTCAAAGGA+TGG + chr7_1:6421954-6421973 Msa1007090:CDS 45.0%
ATCACGGAGCTTCAAAGGAT+GGG + chr7_1:6421955-6421974 Msa1007090:CDS 45.0%
GAGCTTCAAAGGATGGGAAT+CGG + chr7_1:6421961-6421980 Msa1007090:CDS 45.0%
ATGAACTAGTCCCTTCGCAA+CGG - chr7_1:6422077-6422096 None:intergenic 45.0%
CCAAAGCTCTTCAATCCATC+AGG - chr7_1:6422195-6422214 None:intergenic 45.0%
!! CCTGATGGATTGAAGAGCTT+TGG + chr7_1:6422192-6422211 Msa1007090:CDS 45.0%
! GAAATGAAGGCATGCTTGGT+TGG + chr7_1:6422298-6422317 Msa1007090:CDS 45.0%
! TGTCCCATGTTTAAGTTCCC+TGG - chr7_1:6422327-6422346 None:intergenic 45.0%
!! ATTAAAAATTAATTAAAAAC+GGG + chr7_1:6420179-6420198 Msa1007090:intron 5.0%
!! ATTTGAAAATATAATTTAAA+AGG + chr7_1:6420221-6420240 Msa1007090:intron 5.0%
ACAAGTGAACAAGGAGCTCG+AGG + chr7_1:6418827-6418846 Msa1007090:CDS 50.0%
CTCGAGGTTTGCACATTGGA+TGG + chr7_1:6418843-6418862 Msa1007090:CDS 50.0%
GTATTCTTGAGCGCCCTCTT+TGG + chr7_1:6419350-6419369 Msa1007090:intron 50.0%
AGAGACGCCTCTTTAGCACA+AGG - chr7_1:6419380-6419399 None:intergenic 50.0%
GGCATTAGTGAACCAAGGGT+TGG + chr7_1:6419797-6419816 Msa1007090:intron 50.0%
ATGCTAGAGTTGCCAACCCT+TGG - chr7_1:6419812-6419831 None:intergenic 50.0%
!! TGTGGAACAAGGTGCTGCAA+TGG + chr7_1:6421795-6421814 Msa1007090:CDS 50.0%
AGCTTGACATGCTTGCAGGA+GGG - chr7_1:6421846-6421865 None:intergenic 50.0%
AAGCTTGACATGCTTGCAGG+AGG - chr7_1:6421847-6421866 None:intergenic 50.0%
GCATGCTTGGTTGGATTCCA+GGG + chr7_1:6422307-6422326 Msa1007090:CDS 50.0%
GGAGCTCGAGGTTTGCACAT+TGG + chr7_1:6418839-6418858 Msa1007090:CDS 55.0%
CCAGTTCTCTCTCGAACAGC+AGG - chr7_1:6418891-6418910 None:intergenic 55.0%
CCTGCTGTTCGAGAGAGAAC+TGG + chr7_1:6418888-6418907 Msa1007090:CDS 55.0%
! TGGTTCTGCTGCCCTAGCAT+TGG + chr7_1:6420958-6420977 Msa1007090:CDS 55.0%
CTAGGAAGAGGGTTTCCAGC+AGG - chr7_1:6421025-6421044 None:intergenic 55.0%
CTGCTGGAAACCCTCTTCCT+AGG + chr7_1:6421023-6421042 Msa1007090:CDS 55.0%
GGCATGCTTGGTTGGATTCC+AGG + chr7_1:6422306-6422325 Msa1007090:CDS 55.0%
! CTGCAGTGAGTGCTGCTAAG+AGG - chr7_1:6422368-6422387 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 6418813 6422419 6418813 ID=Msa1007090;Name=Msa1007090
chr7_1 mRNA 6418813 6422419 6418813 ID=Msa1007090-mRNA-1;Parent=Msa1007090;Name=Msa1007090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.66|0.25|1|1|0.75|4|0|571
chr7_1 exon 6418813 6418939 6418813 ID=Msa1007090-mRNA-1:exon:1908;Parent=Msa1007090-mRNA-1
chr7_1 exon 6419805 6420022 6419805 ID=Msa1007090-mRNA-1:exon:1909;Parent=Msa1007090-mRNA-1
chr7_1 exon 6420620 6421176 6420620 ID=Msa1007090-mRNA-1:exon:1910;Parent=Msa1007090-mRNA-1
chr7_1 exon 6421609 6422419 6421609 ID=Msa1007090-mRNA-1:exon:1911;Parent=Msa1007090-mRNA-1
chr7_1 CDS 6418813 6418939 6418813 ID=Msa1007090-mRNA-1:cds;Parent=Msa1007090-mRNA-1
chr7_1 CDS 6419805 6420022 6419805 ID=Msa1007090-mRNA-1:cds;Parent=Msa1007090-mRNA-1
chr7_1 CDS 6420620 6421176 6420620 ID=Msa1007090-mRNA-1:cds;Parent=Msa1007090-mRNA-1
chr7_1 CDS 6421609 6422419 6421609 ID=Msa1007090-mRNA-1:cds;Parent=Msa1007090-mRNA-1
Gene Sequence

>Msa1007090

GACAAAATGGAGAAACAAGTGAACAAGGAGCTCGAGGTTTGCACATTGGATGGATCTATTGATAGACACGGTCATCCTGCTGTTCGAGAGAGAACTGGAACTTGGTTTGCAGGGATTTTGATTTTAGTGAACCAAGGGTTGGCAACTCTAGCATTTTTTGGTGTGGGAGTGAATCTGGTACTATTTTTGACAAGAGTGATGGGTCAAGATAATGCTGATGCTGCAAACAATGTGAGCAAGTGGACAGGGACAGTTTACATCTTCTCTCTTCTTGGAGCTTTCCTTAGTGACTCTTATTGGGGAAGATACATCACTTGTGCCATTTTCCAAGTCATCTTTGTGATTGGTTTGGTGGCATTATCATTGACATCTTACATATTCCTATTGAAGCCAAATGGTTGTGGGTCCAAAGAATTACCTTGTGGATCACATTCATCATATGAAACAACTTTATTCTATGTATCCATTTATCTAGTAGCCTTAGGAAATGGAGGATATCAACCTAACATTGCTACATTTGGTGCTGATCAATTTGATGAAAGTGACCCTAGTGAACAACACTCAAAAATAGCATTTTTTAGCTATTTTTATTTGGCTTTGAACATTGGATCACTCTTCTCAAACACCATATTGGACTATTTTGAAGATGAGGGACTATGGACTTTGGGATTTTGTGTATCAGCTGGTTCTGCTGCCCTAGCATTGGTTTTGTTTCTTTGTGGCACATCAAAATATAGATACTTTAAACCTGCTGGAAACCCTCTTCCTAGGTTTTGTCAAGTTTTTGTTGCAGCAATAAGAAAATGGAAGGTCAAAATGTTCGAAGGCGAAGATAAACTTTATGAGGTTGAAGAGTGTTTATCTAATGGAGGGAGAAAAATGTACCACACACAAGGATTTAGGTTTTTAGATAAAGCAGCATTTATCACACCAAAAGATTTAAAGCAGATGGAAGAAAATAAATGCAGTCCATGGTTCCTATCAACTGTGACACAAGTAGAAGAAGTGAAATGCATATTAAGATTACTTCCAATTTGGCTATGCACTATATTATTCTCTGTGGTCTTCAGTCAAATGGCATCACTCTTTGTGGAACAAGGTGCTGCAATGGAGACTAAAATTTCCAATTTTCATATCCCTCCTGCAAGCATGTCAAGCTTTGACATTCTCAGTGTAGTTTCCTTCATCTTCATCTATCGGAGAATTCTCGACCCTCTTGTTGCGAGATTTAAAATGAAATCCAAAGGTATCACGGAGCTTCAAAGGATGGGAATCGGTCTAGTATTAGCAATCATAGCAATGGTTTCAGCAGGATTAGTAGAGATTTTCCGGCTAAAGTATGCGATAAAAGAAGAAAAAAATTGTAGCCGTTGCGAAGGGACTAGTTCATTGTCGATATTTTGGCAAGTACCGCAATATGTACTAATAGGAGCATCAGAAGTTTTCATGTATGTTGGTCAATTGGAGTTTTTCAATTCACAAGCACCTGATGGATTGAAGAGCTTTGGAAGTGCACTTTGTATGACTTCAATATCATTAGGAAACTATGTTAGTAGCTTGCTTGTTGCAATTGTGATGAAGATATCAACTAGAAATGAAGGCATGCTTGGTTGGATTCCAGGGAACTTAAACATGGGACATTTGGATAGGTTTTACTTCCTCTTAGCAGCACTCACTGCAGCTGACCTTGTAGTCTATATTGCAATGGCTAGG
Protein sequence

>Msa1007090

DKMEKQVNKELEVCTLDGSIDRHGHPAVRERTGTWFAGILILVNQGLATLAFFGVGVNLVLFLTRVMGQDNADAANNVSKWTGTVYIFSLLGAFLSDSYWGRYITCAIFQVIFVIGLVALSLTSYIFLLKPNGCGSKELPCGSHSSYETTLFYVSIYLVALGNGGYQPNIATFGADQFDESDPSEQHSKIAFFSYFYLALNIGSLFSNTILDYFEDEGLWTLGFCVSAGSAALALVLFLCGTSKYRYFKPAGNPLPRFCQVFVAAIRKWKVKMFEGEDKLYEVEECLSNGGRKMYHTQGFRFLDKAAFITPKDLKQMEENKCSPWFLSTVTQVEEVKCILRLLPIWLCTILFSVVFSQMASLFVEQGAAMETKISNFHIPPASMSSFDILSVVSFIFIYRRILDPLVARFKMKSKGITELQRMGIGLVLAIIAMVSAGLVEIFRLKYAIKEEKNCSRCEGTSSLSIFWQVPQYVLIGASEVFMYVGQLEFFNSQAPDGLKSFGSALCMTSISLGNYVSSLLVAIVMKISTRNEGMLGWIPGNLNMGHLDRFYFLLAALTAADLVVYIAMAR