AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0497500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497500 MtrunA17_Chr3g0092501 97.855 606 13 0 1 606 1 606 0.0 1254
Msa0497500 MtrunA17_Chr8g0361791 71.264 609 169 4 3 606 2 609 0.0 941
Msa0497500 MtrunA17_Chr5g0416991 72.391 594 160 3 17 606 15 608 0.0 941
Msa0497500 MtrunA17_Chr4g0055031 63.209 617 211 6 1 606 1 612 0.0 833
Msa0497500 MtrunA17_Chr8g0388881 53.181 613 254 7 19 606 25 629 0.0 669
Msa0497500 MtrunA17_Chr7g0246701 52.053 609 260 6 19 599 23 627 0.0 657
Msa0497500 MtrunA17_Chr6g0472571 55.415 554 234 4 62 603 83 635 0.0 650
Msa0497500 MtrunA17_Chr1g0203741 51.870 615 267 8 10 598 7 618 0.0 647
Msa0497500 MtrunA17_Chr8g0350391 50.984 610 266 8 20 599 26 632 0.0 635
Msa0497500 MtrunA17_Chr7g0214551 51.181 508 235 3 78 572 36 543 0.0 548
Msa0497500 MtrunA17_Chr8g0369481 42.404 599 316 10 16 604 16 595 1.05e-161 475
Msa0497500 MtrunA17_Chr5g0409411 43.072 599 309 14 10 597 13 590 3.49e-161 474
Msa0497500 MtrunA17_Chr7g0246681 44.068 531 265 8 83 597 73 587 6.40e-152 450
Msa0497500 MtrunA17_Chr8g0350351 43.346 526 266 9 88 597 91 600 4.02e-149 443
Msa0497500 MtrunA17_Chr3g0112341 42.039 559 288 15 55 594 124 665 2.75e-140 423
Msa0497500 MtrunA17_Chr1g0167381 39.701 602 315 15 3 572 2 587 3.17e-138 416
Msa0497500 MtrunA17_Chr1g0187601 42.572 552 272 15 77 599 81 616 1.29e-137 414
Msa0497500 MtrunA17_Chr1g0159741 42.883 548 285 15 66 596 122 658 6.39e-137 414
Msa0497500 MtrunA17_Chr5g0435751 40.074 544 281 12 61 590 101 613 2.40e-136 411
Msa0497500 MtrunA17_Chr1g0183721 39.895 574 302 17 59 606 38 594 1.57e-132 400
Msa0497500 MtrunA17_Chr3g0130381 41.948 534 269 16 94 604 268 783 4.93e-128 395
Msa0497500 MtrunA17_Chr5g0437501 39.122 524 276 13 93 591 100 605 3.18e-124 379
Msa0497500 MtrunA17_Chr8g0384431 41.468 504 258 13 94 574 298 787 1.29e-122 381
Msa0497500 MtrunA17_Chr8g0372471 40.288 556 279 18 65 588 353 887 1.34e-122 384
Msa0497500 MtrunA17_Chr1g0171781 38.941 529 290 9 88 597 89 603 1.82e-121 372
Msa0497500 MtrunA17_Chr3g0113981 38.826 528 288 15 62 574 146 653 1.75e-120 372
Msa0497500 MtrunA17_Chr3g0125511 40.072 559 291 18 65 597 202 742 2.89e-118 368
Msa0497500 MtrunA17_Chr1g0155141 34.542 524 290 18 94 597 209 699 1.98e-88 289
Msa0497500 MtrunA17_Chr3g0115931 30.198 606 358 18 14 580 94 673 8.23e-85 279
Msa0497500 MtrunA17_Chr5g0426281 31.475 556 311 18 83 597 144 670 1.58e-83 275
Msa0497500 MtrunA17_Chr5g0404771 48.117 239 110 4 94 328 329 557 2.65e-70 237
Msa0497500 MtrunA17_Chr4g0043121 29.814 322 206 6 83 392 84 397 2.45e-46 169
Msa0497500 MtrunA17_Chr5g0404761 34.432 273 157 9 334 588 1 269 6.23e-43 155
Msa0497500 MtrunA17_Chr4g0043131 48.485 132 64 3 454 582 40 170 7.84e-37 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0497500 AT1G26850.2 69.318 616 176 5 1 604 1 615 0.0 914
Msa0497500 AT1G26850.1 69.318 616 176 5 1 604 1 615 0.0 914
Msa0497500 AT4G18030.1 63.830 611 209 5 1 602 1 608 0.0 835
Msa0497500 AT1G26850.3 67.857 504 149 5 1 492 1 503 0.0 730
Msa0497500 AT4G10440.1 52.883 607 250 6 19 599 22 618 0.0 671
Msa0497500 AT1G33170.1 55.535 551 230 3 61 599 89 636 0.0 659
Msa0497500 AT2G45750.1 51.329 602 267 7 19 598 19 616 0.0 635
Msa0497500 AT4G00750.1 50.656 610 276 5 19 606 25 631 0.0 634
Msa0497500 AT2G43200.2 50.888 507 239 4 85 582 91 596 0.0 531
Msa0497500 AT2G43200.1 50.888 507 239 4 85 582 91 596 0.0 531
Msa0497500 AT1G31850.1 42.140 598 315 12 21 604 23 603 2.93e-168 493
Msa0497500 AT1G31850.2 42.140 598 315 12 21 604 23 603 2.93e-168 493
Msa0497500 AT1G31850.4 42.140 598 315 12 21 604 23 603 2.93e-168 493
Msa0497500 AT1G31850.3 42.140 598 315 12 21 604 23 603 2.93e-168 493
Msa0497500 AT4G19120.1 41.391 604 309 13 21 606 23 599 1.16e-163 481
Msa0497500 AT4G19120.2 41.391 604 309 13 21 606 23 599 1.16e-163 481
Msa0497500 AT4G00740.1 41.626 615 319 11 7 603 7 599 2.77e-155 459
Msa0497500 AT4G00740.2 41.626 615 319 11 7 603 7 599 2.77e-155 459
Msa0497500 AT2G39750.1 42.344 529 280 11 81 595 173 690 4.92e-142 428
Msa0497500 AT5G06050.1 41.455 550 290 14 64 596 129 663 9.53e-141 425
Msa0497500 AT1G77260.1 42.991 535 274 15 77 595 135 654 1.37e-139 421
Msa0497500 AT1G04430.1 41.278 579 291 14 61 606 60 622 2.15e-139 419
Msa0497500 AT1G04430.3 41.278 579 291 14 61 606 60 622 2.15e-139 419
Msa0497500 AT1G04430.2 41.278 579 291 14 61 606 60 622 2.15e-139 419
Msa0497500 AT4G14360.1 42.967 519 258 13 78 572 67 571 6.91e-135 407
Msa0497500 AT4G14360.2 42.967 519 258 13 78 572 67 571 6.91e-135 407
Msa0497500 AT3G23300.2 41.682 547 275 16 83 602 77 606 4.42e-134 405
Msa0497500 AT3G23300.1 41.682 547 275 16 83 602 77 606 4.42e-134 405
Msa0497500 AT4G19120.3 41.750 503 249 12 21 505 23 499 5.03e-132 396
Msa0497500 AT1G29470.1 41.667 528 264 16 94 597 250 757 1.28e-128 396
Msa0497500 AT1G29470.2 41.667 528 264 16 94 597 250 757 1.28e-128 396
Msa0497500 AT3G56080.1 41.732 508 263 15 84 576 106 595 5.32e-128 389
Msa0497500 AT2G34300.2 40.909 528 268 15 94 597 250 757 4.41e-126 389
Msa0497500 AT2G34300.3 40.909 528 268 15 94 597 250 757 4.41e-126 389
Msa0497500 AT2G34300.1 40.909 528 268 15 94 597 250 757 4.41e-126 389
Msa0497500 AT5G04060.1 38.983 531 284 12 88 597 86 597 1.85e-125 382
Msa0497500 AT3G10200.1 39.024 533 283 13 88 597 75 588 8.10e-125 380
Msa0497500 AT5G64030.1 40.494 526 274 15 94 597 308 816 1.02e-121 380
Msa0497500 AT5G14430.1 40.370 540 274 15 88 597 83 604 1.37e-119 368
Msa0497500 AT2G40280.1 39.216 510 276 12 93 588 89 578 1.52e-119 367
Msa0497500 AT5G14430.2 40.000 540 276 15 88 597 83 604 6.30e-118 363
Msa0497500 AT3G51070.1 40.824 534 263 20 93 597 380 889 1.20e-117 371
Msa0497500 AT3G10200.2 38.659 507 268 13 88 570 75 562 7.68e-115 355
Msa0497500 AT3G56080.2 43.080 448 224 14 94 526 114 545 1.87e-114 352
Msa0497500 AT3G51070.2 42.516 461 220 18 93 526 380 822 5.38e-102 328
Msa0497500 AT1G13860.4 32.707 532 310 12 80 582 76 588 2.05e-93 300
Msa0497500 AT1G13860.3 32.707 532 310 12 80 582 76 588 2.05e-93 300
Msa0497500 AT1G13860.1 32.707 532 310 12 80 582 76 588 2.05e-93 300
Msa0497500 AT1G13860.5 32.707 532 310 12 80 582 76 588 2.05e-93 300
Msa0497500 AT1G19430.1 34.749 518 292 17 94 591 231 722 9.19e-88 288
Msa0497500 AT1G19430.3 34.749 518 292 17 94 591 231 722 9.19e-88 288
Msa0497500 AT2G03480.2 32.264 530 298 12 82 582 83 580 8.90e-87 282
Msa0497500 AT2G03480.1 32.819 518 322 11 82 582 83 591 2.12e-86 281
Msa0497500 AT1G13860.2 34.554 437 252 10 172 582 4 432 6.83e-83 267
Msa0497500 AT1G78240.1 29.868 606 359 19 14 580 86 664 3.94e-80 266
Msa0497500 AT1G78240.2 29.868 606 359 19 14 580 86 664 3.94e-80 266
Msa0497500 AT1G19430.2 30.633 395 232 14 94 471 231 600 4.34e-45 169
Msa0497500 AT2G03480.3 30.769 286 184 3 82 358 83 363 4.69e-43 160

Find 187 sgRNAs with CRISPR-Local

Find 447 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTCATAACCCATAATT+TGG 0.133173 3_4:+30688611 None:intergenic
CCCTGGATTCTCCCAAATTA+TGG 0.203218 3_4:-30688623 Msa0497500:CDS
GGTGGTTACTGGATACTTTC+TGG 0.206385 3_4:-30689774 Msa0497500:CDS
CCTGCAATCATTGGTGTTCT+TGG 0.240795 3_4:-30690131 Msa0497500:CDS
TGTGGTTTCTTCTACATATT+AGG 0.244248 3_4:-30691393 Msa0497500:CDS
CAATGCAATTTCTCTTCTTC+AGG 0.249924 3_4:+30691108 None:intergenic
TTCTTAGACCTGGTGGTTAC+TGG 0.278416 3_4:-30689785 Msa0497500:CDS
CCTTCCTTCAATGATTTCAT+AGG 0.286945 3_4:-30691989 Msa0497500:five_prime_UTR
TTGAGGAGGACAACCGATTA+TGG 0.292931 3_4:-30688749 Msa0497500:CDS
TTGTGTCTCTCATTCACATA+TGG 0.297936 3_4:+30692097 None:intergenic
TGTATGCCGTCAAGCGGTAC+TGG 0.313995 3_4:-30686265 Msa0497500:CDS
ATGGACATGAATGCTGGTTT+TGG 0.317218 3_4:-30688660 Msa0497500:CDS
AACAGATCCACTGGTGATTC+TGG 0.320240 3_4:+30688794 None:intergenic
CCTGGATTCTCCCAAATTAT+GGG 0.335830 3_4:-30688622 Msa0497500:CDS
TCACATGTTTCTTCCATAAT+CGG 0.339896 3_4:+30688736 None:intergenic
TTGTGGCAAAGGAGTGGTTT+TGG 0.341553 3_4:-30691369 Msa0497500:CDS
TTGAGAAGGCTGTGCAGAAT+TGG 0.342891 3_4:-30690987 Msa0497500:CDS
CGGAATATAACTGCTCCTTC+AGG 0.344332 3_4:+30686395 None:intergenic
CAAGGTTTCATCTGACATAA+TGG 0.350082 3_4:-30686187 Msa0497500:intron
CCGCAAATTCTGATGATATC+TGG 0.350265 3_4:-30689548 Msa0497500:intron
GTTCTCGCTGCTTGATTCCA+TGG 0.353569 3_4:-30690061 Msa0497500:CDS
ATTAGAACTGCATTAGATAC+TGG 0.356004 3_4:-30690850 Msa0497500:CDS
AGCACAAGTTCAATTTGCTT+TGG 0.358150 3_4:-30690165 Msa0497500:CDS
GTCAAGCGGTACTGGGTTGC+AGG 0.358325 3_4:-30686257 Msa0497500:CDS
GTACTATGTAGGGATTTATA+AGG 0.359674 3_4:-30691524 Msa0497500:intron
TGATTGGAATTTATCATGAT+TGG 0.360133 3_4:-30688536 Msa0497500:intron
GGGATTTATAAGGTCTGGTT+TGG 0.360908 3_4:-30691514 Msa0497500:five_prime_UTR
TTCTCGCTGCTTGATTCCAT+GGG 0.364909 3_4:-30690060 Msa0497500:CDS
ATATTCGAGCGTGGATTGAT+TGG 0.372018 3_4:-30688552 Msa0497500:CDS
ATAATGCCAGGTTGCTAGTT+GGG 0.373268 3_4:-30690249 Msa0497500:intron
ACACTGCTAAACTTCTTTGC+TGG 0.373706 3_4:-30689668 Msa0497500:CDS
TTATTGTTTCTATTATCTCC+AGG 0.375991 3_4:+30691450 None:intergenic
TAGTTGTTCTTCCAGTTGAT+TGG 0.377835 3_4:+30689747 None:intergenic
CCAGATATCATCAGAATTTG+CGG 0.379346 3_4:+30689548 None:intergenic
CTTGAAACTAGTAGAGCATA+TGG 0.382581 3_4:-30686011 Msa0497500:three_prime_UTR
CTCTATAATTCATATTCTCT+CGG 0.391117 3_4:+30691145 None:intergenic
GGAACAACATTGAGTCTCTC+TGG 0.392287 3_4:+30688819 None:intergenic
AGATCGATGAATAATGACTA+TGG 0.405921 3_4:+30686045 None:intergenic
TCTATAATTCATATTCTCTC+GGG 0.407275 3_4:+30691146 None:intergenic
AGTGTTATTCCATTGGATAA+TGG 0.410920 3_4:-30690877 Msa0497500:CDS
GTAGCTTTCTCAGATATTGT+AGG 0.412195 3_4:+30688585 None:intergenic
GGCACATAATCACGACTCTT+AGG 0.417529 3_4:+30691042 None:intergenic
TGCCCTCGCTTGATCATGGC+AGG 0.418714 3_4:+30691179 None:intergenic
TCTTCTACATATTAGGTTTG+TGG 0.418853 3_4:-30691386 Msa0497500:CDS
TGGAGGAACTCAGTTTCCTC+AGG 0.420178 3_4:-30690929 Msa0497500:CDS
ACATTCATAACCCATAATTT+GGG 0.421771 3_4:+30688612 None:intergenic
AGCAGTTATATTCCGAGATC+AGG 0.424033 3_4:-30686387 Msa0497500:CDS
ATGTAGGGATTTATAAGGTC+TGG 0.425646 3_4:-30691519 Msa0497500:intron
TGTGTCTCTCATTCACATAT+GGG 0.425862 3_4:+30692098 None:intergenic
ACTAGTAGAGCATATGGTTT+GGG 0.426806 3_4:-30686005 Msa0497500:three_prime_UTR
GTTCAATTTGCTTTGGAAAG+AGG 0.431401 3_4:-30690158 Msa0497500:CDS
TCCTCCTCAAGCTCATCTTC+AGG 0.435903 3_4:+30689708 None:intergenic
AACTAGTAGAGCATATGGTT+TGG 0.437201 3_4:-30686006 Msa0497500:three_prime_UTR
ACATATTAGGTTTGTGGCAA+AGG 0.442396 3_4:-30691380 Msa0497500:CDS
CTCCGAAAAGTTCGAGGAAA+CGG 0.448698 3_4:+30692122 None:intergenic
GGTATTCTACGCCGTTTCCT+TGG 0.450051 3_4:-30691065 Msa0497500:CDS
ACTTGCAAGTGTTATTCCAT+TGG 0.452305 3_4:-30690884 Msa0497500:CDS
TTTCTGGTCCTCCAATCAAC+TGG 0.454130 3_4:-30689758 Msa0497500:CDS
GTTGCGTTGCGTTGTGATGA+AGG 0.457418 3_4:+30691960 None:intergenic
TGGTCCACTTATTTCAGAAA+AGG 0.457651 3_4:-30686291 Msa0497500:CDS
CACTGCTAAACTTCTTTGCT+GGG 0.463203 3_4:-30689667 Msa0497500:CDS
CATGCACCACTAGGTTTAGC+AGG 0.463854 3_4:+30688852 None:intergenic
CCAAGAACACCAATGATTGC+AGG 0.464040 3_4:+30690131 None:intergenic
TGCAACCCAGTACCGCTTGA+CGG 0.468786 3_4:+30686259 None:intergenic
TTTGCGGATTCACATATTGT+AGG 0.469402 3_4:+30689564 None:intergenic
TTGTTCTTCCAGTTGATTGG+AGG 0.469936 3_4:+30689750 None:intergenic
GCACAGCCTTCTCAACTGTC+AGG 0.473202 3_4:+30690995 None:intergenic
GGAGATAATAGAAACAATAA+AGG 0.473411 3_4:-30691447 Msa0497500:CDS
CGTTGCGTTGTGATGAAGGT+GGG 0.474601 3_4:+30691964 None:intergenic
TATTGTTTCTATTATCTCCA+GGG 0.478348 3_4:+30691451 None:intergenic
ACTTGATCATCGACATCATC+AGG 0.478380 3_4:+30691246 None:intergenic
TTCTCACCGTTTGCACCCCA+TGG 0.485211 3_4:+30690044 None:intergenic
ATTATAAAGATTCATAATCA+TGG 0.485455 3_4:-30691487 Msa0497500:exon
TTGTAAGGCGCGTTTGCAAA+CGG 0.487054 3_4:+30691021 None:intergenic
TATGATCTTATCCATGCAAA+TGG 0.488976 3_4:-30686812 Msa0497500:CDS
AGAGGTGTTCCTGCAATCAT+TGG 0.490042 3_4:-30690140 Msa0497500:CDS
CTCCTTCAGGCCGTAAGATA+CGG 0.490436 3_4:+30686408 None:intergenic
ACTGCATTAGATACTGGTTG+TGG 0.496504 3_4:-30690844 Msa0497500:CDS
TTCATAATCATGGCGACGAA+AGG 0.498979 3_4:-30691477 Msa0497500:exon
CCCATAATTTGGGAGAATCC+AGG 0.500245 3_4:+30688622 None:intergenic
TGGAGATGGACCGTATCTTA+CGG 0.502790 3_4:-30686418 Msa0497500:CDS
GTATGCCGTCAAGCGGTACT+GGG 0.506500 3_4:-30686264 Msa0497500:CDS
GATAATGCCAGGTTGCTAGT+TGG 0.509409 3_4:-30690250 Msa0497500:intron
GTTAACAAAATTATTGACTC+GGG 0.511760 3_4:-30688699 Msa0497500:CDS
CGTATCCACACAGTTATTTG+AGG 0.511789 3_4:-30688766 Msa0497500:CDS
AGAATATGAATTATAGAGAA+AGG 0.514276 3_4:-30691140 Msa0497500:CDS
ATGAGCTTGAGGAGGAGCAA+AGG 0.515379 3_4:-30689701 Msa0497500:CDS
AATGTCTAGGTACAAGAAGA+TGG 0.516160 3_4:-30688889 Msa0497500:intron
ATCATAAGTCCTCGGATATG+TGG 0.517032 3_4:+30686829 None:intergenic
TGCAATGTCAATTGCACCAA+GGG 0.517748 3_4:-30690198 Msa0497500:CDS
TCATTGCCCTCGCTTGATCA+TGG 0.521034 3_4:+30691175 None:intergenic
TCAACTGTCAGGCTCTTGTA+AGG 0.521491 3_4:+30691006 None:intergenic
AGAAAGGTGAAATTGCGATC+TGG 0.523535 3_4:-30689632 Msa0497500:CDS
CAGAATTGGATACAGTATGA+AGG 0.524032 3_4:-30690973 Msa0497500:CDS
CTTCAGGACGTTGCCACGCT+CGG 0.524545 3_4:+30689724 None:intergenic
TCATAATCATGGCGACGAAA+GGG 0.524702 3_4:-30691476 Msa0497500:exon
TCAAAAGCTCCAGAAGGAAA+AGG 0.525704 3_4:+30690095 None:intergenic
GAGATTGTGCATTGTAGAAG+TGG 0.528947 3_4:+30692038 None:intergenic
CGCAGGTGGATTGTACATGA+AGG 0.529615 3_4:-30689820 Msa0497500:intron
TGCAATTTCTCTTCTTCAGG+AGG 0.530109 3_4:+30691111 None:intergenic
CTGCATTAGATACTGGTTGT+GGG 0.535379 3_4:-30690843 Msa0497500:CDS
TGTGCTTCATGAGAGTCCCT+TGG 0.536377 3_4:+30690182 None:intergenic
TTCATTGTAGTTGCTTTGTG+TGG 0.537719 3_4:-30691411 Msa0497500:CDS
CCATAATTTGGGAGAATCCA+GGG 0.540312 3_4:+30688623 None:intergenic
GGTTAACAAAATTATTGACT+CGG 0.540607 3_4:-30688700 Msa0497500:CDS
AACTTACGCATTCTTGTACA+AGG 0.541342 3_4:+30686781 None:intergenic
CAAGTGAAAAGAATTGCAAA+AGG 0.546432 3_4:-30686350 Msa0497500:CDS
TAGAAGTGGAATGAAAGAAC+GGG 0.546766 3_4:+30692052 None:intergenic
TAATGCCAGGTTGCTAGTTG+GGG 0.546828 3_4:-30690248 Msa0497500:intron
TCAGCACACCAACCTGATCT+CGG 0.548579 3_4:+30686375 None:intergenic
GGAAACTGAGTTCCTCCACC+AGG 0.551143 3_4:+30690934 None:intergenic
CTGCTAAACCTAGTGGTGCA+TGG 0.551940 3_4:-30688851 Msa0497500:CDS
AATGGCTTCCATGCACCACT+AGG 0.557408 3_4:+30688843 None:intergenic
GTCTCATAGCCGCACCTAGA+GGG 0.558783 3_4:-30691086 Msa0497500:CDS
AGGTGAAAACACCATTTGCA+TGG 0.559659 3_4:+30686801 None:intergenic
GGGTCCTATGAAATCATTGA+AGG 0.565796 3_4:+30691985 None:intergenic
CAAGAGCCTGACAGTTGAGA+AGG 0.566489 3_4:-30691001 Msa0497500:CDS
TGAAATCATTGAAGGAAGGA+AGG 0.566888 3_4:+30691993 None:intergenic
GAACAACATTGAGTCTCTCT+GGG 0.567010 3_4:+30688820 None:intergenic
ATGGGTCTCCGAAAAGTTCG+AGG 0.570628 3_4:+30692116 None:intergenic
GCGTTCCAGCGTCATTGTCA+TGG 0.571673 3_4:+30691268 None:intergenic
TGGGAAAAGAAACACGAGAA+AGG 0.572348 3_4:-30689648 Msa0497500:CDS
ACATTGAGTCTCTCTGGGAA+TGG 0.573515 3_4:+30688825 None:intergenic
CGACTCTTAGGCCAAGGAAA+CGG 0.575028 3_4:+30691054 None:intergenic
GACCGTATCTTACGGCCTGA+AGG 0.579040 3_4:-30686410 Msa0497500:CDS
GGAGGAACTCAGTTTCCTCA+GGG 0.579897 3_4:-30690928 Msa0497500:CDS
TTGATTCCATGGGGTGCAAA+CGG 0.580051 3_4:-30690050 Msa0497500:intron
CCTATGAAATCATTGAAGGA+AGG 0.585015 3_4:+30691989 None:intergenic
GTTATATTCCGAGATCAGGT+TGG 0.587269 3_4:-30686383 Msa0497500:CDS
CTATAATTCATATTCTCTCG+GGG 0.588544 3_4:+30691147 None:intergenic
GGGGAGGTATCGCAATGTGA+TGG 0.591837 3_4:-30688679 Msa0497500:CDS
AACCACCAGGTCTAAGAACT+CGG 0.593120 3_4:+30689790 None:intergenic
TGGATAAGATCATAAGTCCT+CGG 0.595844 3_4:+30686821 None:intergenic
GTAGAAGTGGAATGAAAGAA+CGG 0.597619 3_4:+30692051 None:intergenic
ATATCTGAGAAAGCTACCCT+TGG 0.598288 3_4:-30688579 Msa0497500:CDS
CACGCTCGAATATAACGCCA+AGG 0.600165 3_4:+30688562 None:intergenic
AGAATTGGATACAGTATGAA+GGG 0.603120 3_4:-30690972 Msa0497500:CDS
GTTGACCGAGTTCTTAGACC+TGG 0.606390 3_4:-30689795 Msa0497500:CDS
TACGTGAGGAACAGATCCAC+TGG 0.608155 3_4:+30688785 None:intergenic
ACTACAATGAAAATTGACAC+TGG 0.609222 3_4:+30691423 None:intergenic
ACATGTGAATGCTTACAAGC+GGG 0.609421 3_4:-30688721 Msa0497500:CDS
TAATCACGACTCTTAGGCCA+AGG 0.609435 3_4:+30691048 None:intergenic
ATCCACACAGTTATTTGAGG+AGG 0.610003 3_4:-30688763 Msa0497500:CDS
TTAGGTTTGTGGCAAAGGAG+TGG 0.613237 3_4:-30691375 Msa0497500:CDS
GCGTTGCGTTGTGATGAAGG+TGG 0.613414 3_4:+30691963 None:intergenic
TGCATTAGATACTGGTTGTG+GGG 0.616968 3_4:-30690842 Msa0497500:intron
AGTCCTCGGATATGTGGAGA+AGG 0.621414 3_4:+30686835 None:intergenic
GATCCACTGGTGATTCTGGT+AGG 0.622673 3_4:+30688798 None:intergenic
ACTCACCATGACAATGACGC+TGG 0.623365 3_4:-30691273 Msa0497500:CDS
AATGTGATGGACATGAATGC+TGG 0.624533 3_4:-30688666 Msa0497500:CDS
GACCGAGTTCTTAGACCTGG+TGG 0.625195 3_4:-30689792 Msa0497500:CDS
GGAAGAACAACTACCGAGCG+TGG 0.625378 3_4:-30689737 Msa0497500:CDS
ACAAAATTATTGACTCGGGG+AGG 0.625557 3_4:-30688695 Msa0497500:CDS
AACATGTGAATGCTTACAAG+CGG 0.626082 3_4:-30688722 Msa0497500:CDS
TCCTGAAGATGAGCTTGAGG+AGG 0.630377 3_4:-30689709 Msa0497500:CDS
AAAATGGTGGATCATGAGGA+TGG 0.632536 3_4:-30686311 Msa0497500:CDS
ATGGCGACGAAAGGGAACCC+TGG 0.633656 3_4:-30691468 Msa0497500:CDS
GCCCTCGCTTGATCATGGCA+GGG 0.634535 3_4:+30691180 None:intergenic
CACCCTGCCATGATCAAGCG+AGG 0.635712 3_4:-30691182 Msa0497500:CDS
GAATTGCAAAAGGAATGAGA+TGG 0.639259 3_4:-30686340 Msa0497500:CDS
TCGATGTAGCTATCGTCGCA+AGG 0.639674 3_4:+30691210 None:intergenic
CACAACGCAACGCAACGCAA+CGG 0.643294 3_4:-30691953 Msa0497500:five_prime_UTR
TTAACAAAATTATTGACTCG+GGG 0.644245 3_4:-30688698 Msa0497500:CDS
TGATGTCGATGATCAAGTCA+AGG 0.645651 3_4:-30691241 Msa0497500:CDS
CCGGTATCACTATGAGCTTG+TGG 0.645851 3_4:+30686226 None:intergenic
CTAATCATACCATTATCCAA+TGG 0.649827 3_4:+30690868 None:intergenic
CTTGGCGTTATATTCGAGCG+TGG 0.650173 3_4:-30688561 Msa0497500:CDS
GCATTAAACATTGATGAATG+CGG 0.650787 3_4:-30689603 Msa0497500:CDS
GAAAGTATCCAGTAACCACC+AGG 0.652413 3_4:+30689777 None:intergenic
ACCCTGCCATGATCAAGCGA+GGG 0.652502 3_4:-30691181 Msa0497500:CDS
GTTGCGTTGTGATGAAGGTG+GGG 0.659202 3_4:+30691965 None:intergenic
AGGTCTTGTATGCCGTCAAG+CGG 0.663670 3_4:-30686271 Msa0497500:CDS
GCCATGTCAAAAGCTCCAGA+AGG 0.665789 3_4:+30690089 None:intergenic
TGTCTCATAGCCGCACCTAG+AGG 0.665805 3_4:-30691087 Msa0497500:CDS
ACGTCCTGAAGATGAGCTTG+AGG 0.668730 3_4:-30689712 Msa0497500:CDS
AATAACTGTGTGGATACGTG+AGG 0.670706 3_4:+30688771 None:intergenic
AACGGCGTAGAATACCCTCT+AGG 0.672709 3_4:+30691072 None:intergenic
TTGCAATGTCAATTGCACCA+AGG 0.673230 3_4:-30690199 Msa0497500:CDS
AAGCCTTCTCCACATATCCG+AGG 0.678585 3_4:-30686838 Msa0497500:CDS
GTCCTCCTCAAATAACTGTG+TGG 0.682256 3_4:+30688761 None:intergenic
TCTCGCTGCTTGATTCCATG+GGG 0.683640 3_4:-30690059 Msa0497500:CDS
GTAACTCCTGCTAAACCTAG+TGG 0.692700 3_4:-30688858 Msa0497500:CDS
GAAACTGAGTTCCTCCACCA+GGG 0.692865 3_4:+30690935 None:intergenic
GTTCCTACCAGAATCACCAG+TGG 0.702298 3_4:-30688801 Msa0497500:CDS
ACGCTCGAATATAACGCCAA+GGG 0.703437 3_4:+30688563 None:intergenic
ATGTAAGCATCAGCACCCTG+AGG 0.736890 3_4:+30690913 None:intergenic
CGTAGAATACCCTCTAGGTG+CGG 0.775658 3_4:+30691077 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAAATAAAAAAAA+AGG - chr3_4:30690651-30690670 Msa0497500:intron 0.0%
!! AATAAAAAAATAAAAAAAAA+GGG - chr3_4:30690652-30690671 Msa0497500:intron 0.0%
!! ATTGTAAAATATAATATCTT+TGG - chr3_4:30690769-30690788 Msa0497500:intron 10.0%
!!! TTCTAATTTTGATTTTTATT+TGG - chr3_4:30691912-30691931 Msa0497500:intron 10.0%
!!! TCTAATTTTGATTTTTATTT+GGG - chr3_4:30691913-30691932 Msa0497500:intron 10.0%
!! ATTATAAAGATTCATAATCA+TGG - chr3_4:30686589-30686608 Msa0497500:intron 15.0%
!!! AGTTGATTTATATATAAACA+AGG + chr3_4:30687286-30687305 None:intergenic 15.0%
!!! ATATAAATCAACTATTTTGT+TGG - chr3_4:30687293-30687312 Msa0497500:intron 15.0%
!! TTGATTGAAATATAATCTAT+TGG - chr3_4:30688080-30688099 Msa0497500:intron 15.0%
!! GATTATTAAACCATAATAAT+TGG - chr3_4:30688226-30688245 Msa0497500:intron 15.0%
!!! TTTTTAATCTGAATTTAGTA+TGG - chr3_4:30691110-30691129 Msa0497500:CDS 15.0%
!! ATTAATTAATAAACAGAACA+AGG + chr3_4:30691195-30691214 None:intergenic 15.0%
!!! CTAATTTTGATTTTTATTTG+GGG - chr3_4:30691914-30691933 Msa0497500:intron 15.0%
!! AAAAATAAAATCTGTTACAG+CGG + chr3_4:30686188-30686207 None:intergenic 20.0%
!!! TTTTCTTTAAATTTCCATCT+TGG - chr3_4:30686234-30686253 Msa0497500:exon 20.0%
!!! AATTTTGTTTTGTACTATGT+AGG - chr3_4:30686541-30686560 Msa0497500:intron 20.0%
!!! ATTTTGTTTTGTACTATGTA+GGG - chr3_4:30686542-30686561 Msa0497500:intron 20.0%
!! AGAATATGAATTATAGAGAA+AGG - chr3_4:30686936-30686955 Msa0497500:intron 20.0%
!! TATATATAAACAAGGATGTT+AGG + chr3_4:30687278-30687297 None:intergenic 20.0%
!!! AGAATACTTATGAGTTTTTT+TGG - chr3_4:30688051-30688070 Msa0497500:intron 20.0%
!! GATTATATTTCAATCAACAT+TGG + chr3_4:30688077-30688096 None:intergenic 20.0%
!! AGCAAAAGAAAAAAAGAAAA+GGG + chr3_4:30688576-30688595 None:intergenic 20.0%
!! AAGCAAAAGAAAAAAAGAAA+AGG + chr3_4:30688577-30688596 None:intergenic 20.0%
!!! TGTTTTTCTTTTCAAAAACA+GGG + chr3_4:30688734-30688753 None:intergenic 20.0%
!!! TTTTTGAAAAGAAAAACAGA+TGG - chr3_4:30688736-30688755 Msa0497500:CDS 20.0%
!!! AATTTTATTAGTCATTGAGT+TGG - chr3_4:30689620-30689639 Msa0497500:CDS 20.0%
!!! CCTAATTTATAAATGGATTA+GGG + chr3_4:30689809-30689828 None:intergenic 20.0%
!!! TCCTAATTTATAAATGGATT+AGG + chr3_4:30689810-30689829 None:intergenic 20.0%
!! TTGACATCCTAATTTATAAA+TGG + chr3_4:30689816-30689835 None:intergenic 20.0%
!! ACAATACATTAAGATTATAC+TGG - chr3_4:30689835-30689854 Msa0497500:intron 20.0%
!! AAAAAAAGTAACAATGAAGT+AGG - chr3_4:30689913-30689932 Msa0497500:intron 20.0%
!!! GATTTATTCAGAATTTTGAA+TGG - chr3_4:30689947-30689966 Msa0497500:intron 20.0%
!!! ATTGAAGAAATTTTTTGTTG+AGG - chr3_4:30689982-30690001 Msa0497500:intron 20.0%
!!! ATTTTTTGTTGAGGTTATAT+AGG - chr3_4:30689991-30690010 Msa0497500:intron 20.0%
!!! TTTTTTGTTGAGGTTATATA+GGG - chr3_4:30689992-30690011 Msa0497500:intron 20.0%
!!! ATTTTAACAAGGTATTAAAG+TGG + chr3_4:30690702-30690721 None:intergenic 20.0%
!!! GAATGACTTAAATTTTAACA+AGG + chr3_4:30690713-30690732 None:intergenic 20.0%
!!! TAATGCAGAAGATATTTTAT+TGG - chr3_4:30691638-30691657 Msa0497500:intron 20.0%
! AAATAAGAAAAGTTGCTTAC+TGG + chr3_4:30686159-30686178 None:intergenic 25.0%
!!! TATTGTTTCTATTATCTCCA+GGG + chr3_4:30686628-30686647 None:intergenic 25.0%
!!! TTATTGTTTCTATTATCTCC+AGG + chr3_4:30686629-30686648 None:intergenic 25.0%
! GGAGATAATAGAAACAATAA+AGG - chr3_4:30686629-30686648 Msa0497500:intron 25.0%
! TCTATAATTCATATTCTCTC+GGG + chr3_4:30686933-30686952 None:intergenic 25.0%
! CTCTATAATTCATATTCTCT+CGG + chr3_4:30686934-30686953 None:intergenic 25.0%
!! AATTTTACGACATTGTTTGT+TGG - chr3_4:30687412-30687431 Msa0497500:intron 25.0%
! CAAAAGAAAAAAAGAAAAGG+GGG + chr3_4:30688574-30688593 None:intergenic 25.0%
! GCAAAAGAAAAAAAGAAAAG+GGG + chr3_4:30688575-30688594 None:intergenic 25.0%
!! GAATCTGGTTTAAGAATAAT+AGG + chr3_4:30688639-30688658 None:intergenic 25.0%
!!! CTGTTTTTCTTTTCAAAAAC+AGG + chr3_4:30688735-30688754 None:intergenic 25.0%
! ATTACTCATTGCTTGTAAAA+TGG - chr3_4:30688863-30688882 Msa0497500:CDS 25.0%
!! GTTTTCAATACTCATCTAAA+TGG - chr3_4:30689158-30689177 Msa0497500:intron 25.0%
! TAAATGGTTAAACAATGTCT+AGG - chr3_4:30689174-30689193 Msa0497500:intron 25.0%
!! GGTTAACAAAATTATTGACT+CGG - chr3_4:30689376-30689395 Msa0497500:intron 25.0%
!!! GTTAACAAAATTATTGACTC+GGG - chr3_4:30689377-30689396 Msa0497500:intron 25.0%
!!! TTAACAAAATTATTGACTCG+GGG - chr3_4:30689378-30689397 Msa0497500:intron 25.0%
! ACATTCATAACCCATAATTT+GGG + chr3_4:30689467-30689486 None:intergenic 25.0%
! TGATTGGAATTTATCATGAT+TGG - chr3_4:30689540-30689559 Msa0497500:intron 25.0%
! ATGACTAATAAAATTCACAG+AGG + chr3_4:30689615-30689634 None:intergenic 25.0%
!!! TTTGGTTCTTTATAGATTCA+AGG + chr3_4:30689668-30689687 None:intergenic 25.0%
! CCCTAATCCATTTATAAATT+AGG - chr3_4:30689806-30689825 Msa0497500:CDS 25.0%
! ATAAAGAGAATTATGGCATT+TGG - chr3_4:30689875-30689894 Msa0497500:intron 25.0%
! TGTTTATCAAAATATGCAAC+TGG + chr3_4:30690292-30690311 None:intergenic 25.0%
!!! TTGCATATTTTGATAAACAC+AGG - chr3_4:30690293-30690312 Msa0497500:intron 25.0%
!!! TGCATATTTTGATAAACACA+GGG - chr3_4:30690294-30690313 Msa0497500:intron 25.0%
! TAGATTTATTAGTGCAACAA+AGG - chr3_4:30690416-30690435 Msa0497500:intron 25.0%
!!! GTTGTTGTTTTTGTATTACA+CGG + chr3_4:30690501-30690520 None:intergenic 25.0%
!! TAATTATCTATTTTCTTCCC+AGG - chr3_4:30691211-30691230 Msa0497500:CDS 25.0%
!!! CCAATTTGTTTTTTTGTTTC+TGG + chr3_4:30691383-30691402 None:intergenic 25.0%
! CCAGAAACAAAAAAACAAAT+TGG - chr3_4:30691380-30691399 Msa0497500:CDS 25.0%
!! AGAAGATATTTTATTGGAGA+TGG - chr3_4:30691644-30691663 Msa0497500:intron 25.0%
! AATGAGATGGAATACAAAAA+TGG - chr3_4:30691749-30691768 Msa0497500:intron 25.0%
! TGTTAGTTTAATGATTACCG+AGG - chr3_4:30686258-30686277 Msa0497500:CDS 30.0%
GTGATCAAATATGACAGATA+TGG - chr3_4:30686306-30686325 Msa0497500:CDS 30.0%
! GTTTTCAAATATGATGAACG+CGG - chr3_4:30686421-30686440 Msa0497500:CDS 30.0%
ATCAGAAACTTTGATGTCAA+TGG - chr3_4:30686467-30686486 Msa0497500:intron 30.0%
GTACTATGTAGGGATTTATA+AGG - chr3_4:30686552-30686571 Msa0497500:intron 30.0%
ACTACAATGAAAATTGACAC+TGG + chr3_4:30686656-30686675 None:intergenic 30.0%
TGTGGTTTCTTCTACATATT+AGG - chr3_4:30686683-30686702 Msa0497500:intron 30.0%
TCTTCTACATATTAGGTTTG+TGG - chr3_4:30686690-30686709 Msa0497500:intron 30.0%
CTATAATTCATATTCTCTCG+GGG + chr3_4:30686932-30686951 None:intergenic 30.0%
AGAATTGGATACAGTATGAA+GGG - chr3_4:30687104-30687123 Msa0497500:intron 30.0%
! AGTATGAAGGGAATGTTTTT+AGG - chr3_4:30687116-30687135 Msa0497500:intron 30.0%
! AGTGTTATTCCATTGGATAA+TGG - chr3_4:30687199-30687218 Msa0497500:intron 30.0%
CTAATCATACCATTATCCAA+TGG + chr3_4:30687211-30687230 None:intergenic 30.0%
ATTAGAACTGCATTAGATAC+TGG - chr3_4:30687226-30687245 Msa0497500:intron 30.0%
TGTGATACACTATTTACTAG+GGG + chr3_4:30687349-30687368 None:intergenic 30.0%
CTGTGATACACTATTTACTA+GGG + chr3_4:30687350-30687369 None:intergenic 30.0%
TCTGTGATACACTATTTACT+AGG + chr3_4:30687351-30687370 None:intergenic 30.0%
TGTTGGTCATATATACATGT+TGG - chr3_4:30687429-30687448 Msa0497500:intron 30.0%
TAGTTTATAAGTACTAGCCA+GGG + chr3_4:30687489-30687508 None:intergenic 30.0%
ATAGTTTATAAGTACTAGCC+AGG + chr3_4:30687490-30687509 None:intergenic 30.0%
TTGAATGTAACAACGCATAT+CGG + chr3_4:30687568-30687587 None:intergenic 30.0%
GATCTGACTAATTAATTCCT+CGG - chr3_4:30688102-30688121 Msa0497500:intron 30.0%
! TATGGAATCGTTTTATAACG+AGG + chr3_4:30688128-30688147 None:intergenic 30.0%
! AATTCTTAGTTGTCTAGAGT+CGG + chr3_4:30688182-30688201 None:intergenic 30.0%
GCGAAAAGTTCCAATTATTA+TGG + chr3_4:30688239-30688258 None:intergenic 30.0%
! TAATAATTGGAACTTTTCGC+AGG - chr3_4:30688239-30688258 Msa0497500:intron 30.0%
GCATTAAACATTGATGAATG+CGG - chr3_4:30688473-30688492 Msa0497500:intron 30.0%
!!! CTTTTTTTCTTTTGCTTCAC+TGG - chr3_4:30688580-30688599 Msa0497500:CDS 30.0%
AATAACAGAACTTGCGAAAT+AGG + chr3_4:30688792-30688811 None:intergenic 30.0%
TATTTCGCAAGTTCTGTTAT+TGG - chr3_4:30688791-30688810 Msa0497500:CDS 30.0%
! TTTTCTCAAATTATTGCCAG+TGG - chr3_4:30689018-30689037 Msa0497500:intron 30.0%
!! AGATGAGTATTGAAAACCAA+TGG + chr3_4:30689155-30689174 None:intergenic 30.0%
TCACATGTTTCTTCCATAAT+CGG + chr3_4:30689343-30689362 None:intergenic 30.0%
GACATTCATAACCCATAATT+TGG + chr3_4:30689468-30689487 None:intergenic 30.0%
GTGAAAAAACTTTCTTGAAG+TGG + chr3_4:30689731-30689750 None:intergenic 30.0%
TTCACACATTTGTAAAACTG+TGG - chr3_4:30689746-30689765 Msa0497500:CDS 30.0%
! CATTAAGATTATACTGGCTA+TGG - chr3_4:30689841-30689860 Msa0497500:intron 30.0%
! ATATGCTTCCTTGTTTGATT+GGG + chr3_4:30690114-30690133 None:intergenic 30.0%
! TATATGCTTCCTTGTTTGAT+TGG + chr3_4:30690115-30690134 None:intergenic 30.0%
AGTCCAAGATACATATCATT+TGG - chr3_4:30690166-30690185 Msa0497500:CDS 30.0%
AAACTCAGCCAAAATGAATT+TGG - chr3_4:30690195-30690214 Msa0497500:CDS 30.0%
AACTCAGCCAAAATGAATTT+GGG - chr3_4:30690196-30690215 Msa0497500:CDS 30.0%
! CTTTAGTCCCAAATTCATTT+TGG + chr3_4:30690206-30690225 None:intergenic 30.0%
! AATGAATTTGGGACTAAAGA+TGG - chr3_4:30690207-30690226 Msa0497500:CDS 30.0%
! ATGAATTTGGGACTAAAGAT+GGG - chr3_4:30690208-30690227 Msa0497500:CDS 30.0%
TTATCAAAATATGCAACTGG+TGG + chr3_4:30690289-30690308 None:intergenic 30.0%
! CAACTATTTTGCTTTCATTG+AGG + chr3_4:30690539-30690558 None:intergenic 30.0%
TTAAGTCATTCAAGTAGAGA+AGG - chr3_4:30690722-30690741 Msa0497500:intron 30.0%
! ATATCTTTGGTGTGTTTATC+AGG - chr3_4:30690782-30690801 Msa0497500:intron 30.0%
! TATCTTTGGTGTGTTTATCA+GGG - chr3_4:30690783-30690802 Msa0497500:intron 30.0%
! ACGGTAGATGTTTTACATAT+TGG - chr3_4:30690912-30690931 Msa0497500:CDS 30.0%
!!! TCCGTTTCTATTTTAACCTT+GGG + chr3_4:30690952-30690971 None:intergenic 30.0%
AGCTTCAAAAGCAATATAGT+AGG - chr3_4:30690986-30691005 Msa0497500:CDS 30.0%
TCAATGAAAGCAAATTTAGC+AGG + chr3_4:30691063-30691082 None:intergenic 30.0%
TTCAGATTAAAAATCTCTGC+AGG + chr3_4:30691103-30691122 None:intergenic 30.0%
TTAATAAACAGAACAAGGCT+AGG + chr3_4:30691190-30691209 None:intergenic 30.0%
TATGATCTTATCCATGCAAA+TGG - chr3_4:30691264-30691283 Msa0497500:CDS 30.0%
TTGTAAGATACTGATAACCA+TGG + chr3_4:30691446-30691465 None:intergenic 30.0%
! ATCTCTAGTGTGTATCTTTT+TGG - chr3_4:30691516-30691535 Msa0497500:five_prime_UTR 30.0%
CAAGTGAAAAGAATTGCAAA+AGG - chr3_4:30691726-30691745 Msa0497500:intron 30.0%
!!! AAGACCTTTTCTGAAATAAG+TGG + chr3_4:30691792-30691811 None:intergenic 30.0%
AGATCGATGAATAATGACTA+TGG + chr3_4:30692034-30692053 None:intergenic 30.0%
TGTGTCTCTCATTCACATAT+GGG + chr3_4:30685981-30686000 None:intergenic 35.0%
TTGTGTCTCTCATTCACATA+TGG + chr3_4:30685982-30686001 None:intergenic 35.0%
TAGAAGTGGAATGAAAGAAC+GGG + chr3_4:30686027-30686046 None:intergenic 35.0%
GTAGAAGTGGAATGAAAGAA+CGG + chr3_4:30686028-30686047 None:intergenic 35.0%
TGAAATCATTGAAGGAAGGA+AGG + chr3_4:30686086-30686105 None:intergenic 35.0%
CCTATGAAATCATTGAAGGA+AGG + chr3_4:30686090-30686109 None:intergenic 35.0%
CCTTCCTTCAATGATTTCAT+AGG - chr3_4:30686087-30686106 Msa0497500:three_prime_UTR 35.0%
CATTAAACTAACAGCCAAGA+TGG + chr3_4:30686251-30686270 None:intergenic 35.0%
!!! ATTACCGAGGTTTTAAACAG+CGG - chr3_4:30686271-30686290 Msa0497500:CDS 35.0%
TTTCAATGTCTTTGACAACG+CGG + chr3_4:30686344-30686363 None:intergenic 35.0%
CTGTGAAAACATTCACAGTA+TGG + chr3_4:30686382-30686401 None:intergenic 35.0%
! CTGTGAATGTTTTCACAGTA+TGG - chr3_4:30686384-30686403 Msa0497500:CDS 35.0%
TTTGAAAACTCTGATGTCTC+CGG + chr3_4:30686410-30686429 None:intergenic 35.0%
AACTTTGATGTCAATGGTTG+TGG - chr3_4:30686473-30686492 Msa0497500:intron 35.0%
ATGTAGGGATTTATAAGGTC+TGG - chr3_4:30686557-30686576 Msa0497500:intron 35.0%
! TTCATTGTAGTTGCTTTGTG+TGG - chr3_4:30686665-30686684 Msa0497500:intron 35.0%
ACATATTAGGTTTGTGGCAA+AGG - chr3_4:30686696-30686715 Msa0497500:intron 35.0%
CAATGCAATTTCTCTTCTTC+AGG + chr3_4:30686971-30686990 None:intergenic 35.0%
CAGAATTGGATACAGTATGA+AGG - chr3_4:30687103-30687122 Msa0497500:intron 35.0%
! ACTTGCAAGTGTTATTCCAT+TGG - chr3_4:30687192-30687211 Msa0497500:intron 35.0%
AACAAGGATGTTAGGTTAGT+AGG + chr3_4:30687270-30687289 None:intergenic 35.0%
AATTACAGCTATAAGCGTAG+CGG + chr3_4:30687396-30687415 None:intergenic 35.0%
TCTCAAATCATTACCTGTGT+CGG - chr3_4:30687599-30687618 Msa0497500:intron 35.0%
GTAAAAGAGAGAACTTTGCA+TGG + chr3_4:30687709-30687728 None:intergenic 35.0%
TAGGGTTAAAAGTGGAAAAC+GGG + chr3_4:30687745-30687764 None:intergenic 35.0%
GTAGGGTTAAAAGTGGAAAA+CGG + chr3_4:30687746-30687765 None:intergenic 35.0%
! AGCACAAGTTCAATTTGCTT+TGG - chr3_4:30687911-30687930 Msa0497500:intron 35.0%
!! GTTCAATTTGCTTTGGAAAG+AGG - chr3_4:30687918-30687937 Msa0497500:intron 35.0%
GACTCTAGACAACTAAGAAT+TGG - chr3_4:30688181-30688200 Msa0497500:intron 35.0%
TAGTTGTTCTTCCAGTTGAT+TGG + chr3_4:30688332-30688351 None:intergenic 35.0%
TTTGCGGATTCACATATTGT+AGG + chr3_4:30688515-30688534 None:intergenic 35.0%
CCAGATATCATCAGAATTTG+CGG + chr3_4:30688531-30688550 None:intergenic 35.0%
TCAGTGCTTCATAGTTACAT+AGG - chr3_4:30689064-30689083 Msa0497500:intron 35.0%
AATGTCTAGGTACAAGAAGA+TGG - chr3_4:30689187-30689206 Msa0497500:intron 35.0%
AACATGTGAATGCTTACAAG+CGG - chr3_4:30689354-30689373 Msa0497500:intron 35.0%
GTAGCTTTCTCAGATATTGT+AGG + chr3_4:30689494-30689513 None:intergenic 35.0%
AAACAGAGAAAACCAAGTGA+AGG + chr3_4:30689572-30689591 None:intergenic 35.0%
! CTCTGTTTTCTCTTTCCTTT+TGG - chr3_4:30689584-30689603 Msa0497500:CDS 35.0%
GTAAGGACTGTATCTAAGTT+TGG + chr3_4:30689686-30689705 None:intergenic 35.0%
AGAATAAGAACAGTAGCGTA+AGG + chr3_4:30689703-30689722 None:intergenic 35.0%
AATTCTCTTTATCCAGCAGA+TGG + chr3_4:30689867-30689886 None:intergenic 35.0%
CTGCTGGATAAAGAGAATTA+TGG - chr3_4:30689868-30689887 Msa0497500:intron 35.0%
GTTGAGGTTATATAGGGATT+CGG - chr3_4:30689998-30690017 Msa0497500:intron 35.0%
TTGAGGTTATATAGGGATTC+GGG - chr3_4:30689999-30690018 Msa0497500:intron 35.0%
! TTCCTTGTTTGATTGGGATT+AGG + chr3_4:30690108-30690127 None:intergenic 35.0%
GTGCCAAATGATATGTATCT+TGG + chr3_4:30690172-30690191 None:intergenic 35.0%
ATTGCATGTGATTGGAGATA+AGG - chr3_4:30690235-30690254 Msa0497500:CDS 35.0%
!! CAACTAACATTGGCTTATGT+CGG + chr3_4:30690338-30690357 None:intergenic 35.0%
GACATAAGCCAATGTTAGTT+GGG - chr3_4:30690337-30690356 Msa0497500:intron 35.0%
ATACTAGCAATGGCTTATGT+TGG + chr3_4:30690380-30690399 None:intergenic 35.0%
GTGATGACTTATACTAGCAA+TGG + chr3_4:30690390-30690409 None:intergenic 35.0%
! CTATTTTGCTTTCATTGAGG+TGG + chr3_4:30690536-30690555 None:intergenic 35.0%
AAACACGTCAAACCTAAATG+CGG - chr3_4:30690562-30690581 Msa0497500:intron 35.0%
! CTGCAAGTGTTCTAAACTTT+GGG - chr3_4:30690609-30690628 Msa0497500:intron 35.0%
TGTTTGCAATATGCATGCTA+TGG - chr3_4:30690862-30690881 Msa0497500:CDS 35.0%
GTTTGCAATATGCATGCTAT+GGG - chr3_4:30690863-30690882 Msa0497500:CDS 35.0%
!!! CCGTTTCTATTTTAACCTTG+GGG + chr3_4:30690951-30690970 None:intergenic 35.0%
CCCCAAGGTTAAAATAGAAA+CGG - chr3_4:30690948-30690967 Msa0497500:CDS 35.0%
!!! CTCCGTTTCTATTTTAACCT+TGG + chr3_4:30690953-30690972 None:intergenic 35.0%
AGTAGGCTGAAATATCTACT+AGG - chr3_4:30691003-30691022 Msa0497500:CDS 35.0%
TGGATAAGATCATAAGTCCT+CGG + chr3_4:30691258-30691277 None:intergenic 35.0%
AACTTACGCATTCTTGTACA+AGG + chr3_4:30691298-30691317 None:intergenic 35.0%
CTAAATTGAACCCAATTGCT+AGG - chr3_4:30691492-30691511 Msa0497500:five_prime_UTR 35.0%
ACTAGAGATTCCTAGCAATT+GGG + chr3_4:30691505-30691524 None:intergenic 35.0%
TTTGGACCTCATCTTGAATT+AGG - chr3_4:30691534-30691553 Msa0497500:intron 35.0%
CGTGTAATGCAAACTACTTT+AGG - chr3_4:30691584-30691603 Msa0497500:intron 35.0%
! TGCATTGATCATCAGAGTTA+GGG + chr3_4:30691614-30691633 None:intergenic 35.0%
GAATTGCAAAAGGAATGAGA+TGG - chr3_4:30691736-30691755 Msa0497500:intron 35.0%
GAGATGGAATACAAAAATGG+TGG - chr3_4:30691752-30691771 Msa0497500:intron 35.0%
!! TACAAAAATGGTGGATCATG+AGG - chr3_4:30691761-30691780 Msa0497500:intron 35.0%
TGGTCCACTTATTTCAGAAA+AGG - chr3_4:30691785-30691804 Msa0497500:intron 35.0%
TTGGAACAATACTTCCATTC+CGG + chr3_4:30691872-30691891 None:intergenic 35.0%
CATTATGTCAGATGAAACCT+TGG + chr3_4:30691891-30691910 None:intergenic 35.0%
CAAGGTTTCATCTGACATAA+TGG - chr3_4:30691889-30691908 Msa0497500:intron 35.0%
CTTGAAACTAGTAGAGCATA+TGG - chr3_4:30692065-30692084 Msa0497500:five_prime_UTR 35.0%
AACTAGTAGAGCATATGGTT+TGG - chr3_4:30692070-30692089 Msa0497500:five_prime_UTR 35.0%
ACTAGTAGAGCATATGGTTT+GGG - chr3_4:30692071-30692090 Msa0497500:five_prime_UTR 35.0%
! TTCCGTTTCCTCGAACTTTT+CGG - chr3_4:30685952-30685971 Msa0497500:three_prime_UTR 40.0%
GAGATTGTGCATTGTAGAAG+TGG + chr3_4:30686041-30686060 None:intergenic 40.0%
GGGTCCTATGAAATCATTGA+AGG + chr3_4:30686094-30686113 None:intergenic 40.0%
! GAATGTTTTCACAGTATGGC+CGG - chr3_4:30686388-30686407 Msa0497500:CDS 40.0%
GGGATTTATAAGGTCTGGTT+TGG - chr3_4:30686562-30686581 Msa0497500:intron 40.0%
TTCATAATCATGGCGACGAA+AGG - chr3_4:30686599-30686618 Msa0497500:intron 40.0%
TCATAATCATGGCGACGAAA+GGG - chr3_4:30686600-30686619 Msa0497500:intron 40.0%
!!! CAAAGGAGTGGTTTTGGAAA+AGG - chr3_4:30686713-30686732 Msa0497500:intron 40.0%
ACTTGATCATCGACATCATC+AGG + chr3_4:30686833-30686852 None:intergenic 40.0%
TGATGTCGATGATCAAGTCA+AGG - chr3_4:30686835-30686854 Msa0497500:CDS 40.0%
TGCAATTTCTCTTCTTCAGG+AGG + chr3_4:30686968-30686987 None:intergenic 40.0%
!!! AATGTTTTTAGGTTCCCTGG+TGG - chr3_4:30687127-30687146 Msa0497500:intron 40.0%
! ACTGCATTAGATACTGGTTG+TGG - chr3_4:30687232-30687251 Msa0497500:intron 40.0%
! CTGCATTAGATACTGGTTGT+GGG - chr3_4:30687233-30687252 Msa0497500:intron 40.0%
! TGCATTAGATACTGGTTGTG+GGG - chr3_4:30687234-30687253 Msa0497500:intron 40.0%
! AACGCATATCGGTGTGTTTT+TGG + chr3_4:30687557-30687576 None:intergenic 40.0%
!! TTCCTGTCATTGATAATGCC+AGG - chr3_4:30687815-30687834 Msa0497500:intron 40.0%
AACCTGGCATTATCAATGAC+AGG + chr3_4:30687820-30687839 None:intergenic 40.0%
ATAATGCCAGGTTGCTAGTT+GGG - chr3_4:30687827-30687846 Msa0497500:intron 40.0%
TTGCAATGTCAATTGCACCA+AGG - chr3_4:30687877-30687896 Msa0497500:intron 40.0%
TGCAATGTCAATTGCACCAA+GGG - chr3_4:30687878-30687897 Msa0497500:intron 40.0%
! ATTATGCTGCCTTTTCCTTC+TGG - chr3_4:30687972-30687991 Msa0497500:intron 40.0%
TCAAAAGCTCCAGAAGGAAA+AGG + chr3_4:30687984-30688003 None:intergenic 40.0%
! AGGTAGTGGTCTAAAGCTTA+TGG + chr3_4:30688146-30688165 None:intergenic 40.0%
GACCACTACCTGTATTTGTT+TGG - chr3_4:30688155-30688174 Msa0497500:intron 40.0%
GTCCAAACAAATACAGGTAG+TGG + chr3_4:30688160-30688179 None:intergenic 40.0%
! TAATTGGAACTTTTCGCAGG+TGG - chr3_4:30688242-30688261 Msa0497500:intron 40.0%
TTGTTCTTCCAGTTGATTGG+AGG + chr3_4:30688329-30688348 None:intergenic 40.0%
ACACTGCTAAACTTCTTTGC+TGG - chr3_4:30688408-30688427 Msa0497500:intron 40.0%
CACTGCTAAACTTCTTTGCT+GGG - chr3_4:30688409-30688428 Msa0497500:intron 40.0%
TGGGAAAAGAAACACGAGAA+AGG - chr3_4:30688428-30688447 Msa0497500:intron 40.0%
AGAAAGGTGAAATTGCGATC+TGG - chr3_4:30688444-30688463 Msa0497500:intron 40.0%
CCGCAAATTCTGATGATATC+TGG - chr3_4:30688528-30688547 Msa0497500:intron 40.0%
AACCAGATTCTGTGTCAACA+TGG - chr3_4:30688649-30688668 Msa0497500:CDS 40.0%
AGATTCTGTGTCAACATGGA+CGG - chr3_4:30688653-30688672 Msa0497500:CDS 40.0%
CAGAACTTGCGAAATAGGTT+GGG + chr3_4:30688787-30688806 None:intergenic 40.0%
ACAGAACTTGCGAAATAGGT+TGG + chr3_4:30688788-30688807 None:intergenic 40.0%
TCGCAAGTTCTGTTATTGGA+AGG - chr3_4:30688795-30688814 Msa0497500:CDS 40.0%
! GCACTGACACTTCATATTGA+AGG - chr3_4:30688936-30688955 Msa0497500:intron 40.0%
CCAATGGTCCATAATCCAAA+GGG + chr3_4:30689139-30689158 None:intergenic 40.0%
ACCAATGGTCCATAATCCAA+AGG + chr3_4:30689140-30689159 None:intergenic 40.0%
GAACAACATTGAGTCTCTCT+GGG + chr3_4:30689259-30689278 None:intergenic 40.0%
AATAACTGTGTGGATACGTG+AGG + chr3_4:30689308-30689327 None:intergenic 40.0%
CGTATCCACACAGTTATTTG+AGG - chr3_4:30689310-30689329 Msa0497500:intron 40.0%
ATCCACACAGTTATTTGAGG+AGG - chr3_4:30689313-30689332 Msa0497500:intron 40.0%
ACATGTGAATGCTTACAAGC+GGG - chr3_4:30689355-30689374 Msa0497500:intron 40.0%
!! ACAAAATTATTGACTCGGGG+AGG - chr3_4:30689381-30689400 Msa0497500:intron 40.0%
!! AATGTGATGGACATGAATGC+TGG - chr3_4:30689410-30689429 Msa0497500:intron 40.0%
!!! ATGGACATGAATGCTGGTTT+TGG - chr3_4:30689416-30689435 Msa0497500:intron 40.0%
CCATAATTTGGGAGAATCCA+GGG + chr3_4:30689456-30689475 None:intergenic 40.0%
CCTGGATTCTCCCAAATTAT+GGG - chr3_4:30689454-30689473 Msa0497500:intron 40.0%
ATATCTGAGAAAGCTACCCT+TGG - chr3_4:30689497-30689516 Msa0497500:intron 40.0%
! ATATTCGAGCGTGGATTGAT+TGG - chr3_4:30689524-30689543 Msa0497500:intron 40.0%
! GATTGGTAACTTCCTTCACT+TGG - chr3_4:30689557-30689576 Msa0497500:CDS 40.0%
TTCACAGAGGAAAAGCCAAA+AGG + chr3_4:30689602-30689621 None:intergenic 40.0%
CTCCTAATCCCAATCAAACA+AGG - chr3_4:30690103-30690122 Msa0497500:CDS 40.0%
ATCTTGGACTAACTCAGAAG+AGG + chr3_4:30690156-30690175 None:intergenic 40.0%
TGGGATGAATTGCATGTGAT+TGG - chr3_4:30690227-30690246 Msa0497500:CDS 40.0%
GATAAGGACATAATGCCTTG+AGG - chr3_4:30690251-30690270 Msa0497500:intron 40.0%
CGACATAAGCCAATGTTAGT+TGG - chr3_4:30690336-30690355 Msa0497500:intron 40.0%
ACACAGAACCCAACTAACAT+TGG + chr3_4:30690348-30690367 None:intergenic 40.0%
! GCATTTAGGTTTGACGTGTT+TGG + chr3_4:30690563-30690582 None:intergenic 40.0%
TCAAACCTAAATGCGGAGAA+GGG - chr3_4:30690569-30690588 Msa0497500:intron 40.0%
! CCAAAGTTTAGAACACTTGC+AGG + chr3_4:30690611-30690630 None:intergenic 40.0%
! CCTGCAAGTGTTCTAAACTT+TGG - chr3_4:30690608-30690627 Msa0497500:intron 40.0%
! CATTTGTTACCGGGTATAGA+CGG - chr3_4:30690893-30690912 Msa0497500:CDS 40.0%
AAACATCTACCGTCTATACC+CGG + chr3_4:30690905-30690924 None:intergenic 40.0%
ATCATAAGTCCTCGGATATG+TGG + chr3_4:30691250-30691269 None:intergenic 40.0%
AGGTGAAAACACCATTTGCA+TGG + chr3_4:30691278-30691297 None:intergenic 40.0%
TGCTTAGACATGTACAAGCT+AGG + chr3_4:30691336-30691355 None:intergenic 40.0%
CACTAGAGATTCCTAGCAAT+TGG + chr3_4:30691506-30691525 None:intergenic 40.0%
! GCATTGATCATCAGAGTTAG+GGG + chr3_4:30691613-30691632 None:intergenic 40.0%
! CTGCATTGATCATCAGAGTT+AGG + chr3_4:30691615-30691634 None:intergenic 40.0%
CTAACTCTGATGATCAATGC+AGG - chr3_4:30691613-30691632 Msa0497500:intron 40.0%
AGCAGTTATATTCCGAGATC+AGG - chr3_4:30691689-30691708 Msa0497500:intron 40.0%
GTTATATTCCGAGATCAGGT+TGG - chr3_4:30691693-30691712 Msa0497500:intron 40.0%
!! AAAATGGTGGATCATGAGGA+TGG - chr3_4:30691765-30691784 Msa0497500:intron 40.0%
!! GGAATGGAAGTATTGTTCCA+AGG - chr3_4:30691871-30691890 Msa0497500:intron 40.0%
CTCCGAAAAGTTCGAGGAAA+CGG + chr3_4:30685957-30685976 None:intergenic 45.0%
! GCAACCGCTGTTTAAAACCT+CGG + chr3_4:30686278-30686297 None:intergenic 45.0%
GACAGATATGGCCTCAATTG+TGG - chr3_4:30686318-30686337 Msa0497500:CDS 45.0%
TGCCTCCTCAACCACAATTT+GGG + chr3_4:30686448-30686467 None:intergenic 45.0%
ATGCCTCCTCAACCACAATT+TGG + chr3_4:30686449-30686468 None:intergenic 45.0%
TTAGGTTTGTGGCAAAGGAG+TGG - chr3_4:30686701-30686720 Msa0497500:intron 45.0%
! TTGTGGCAAAGGAGTGGTTT+TGG - chr3_4:30686707-30686726 Msa0497500:intron 45.0%
TAATCACGACTCTTAGGCCA+AGG + chr3_4:30687031-30687050 None:intergenic 45.0%
GGCACATAATCACGACTCTT+AGG + chr3_4:30687037-30687056 None:intergenic 45.0%
TTGTAAGGCGCGTTTGCAAA+CGG + chr3_4:30687058-30687077 None:intergenic 45.0%
TCAACTGTCAGGCTCTTGTA+AGG + chr3_4:30687073-30687092 None:intergenic 45.0%
TTGAGAAGGCTGTGCAGAAT+TGG - chr3_4:30687089-30687108 Msa0497500:intron 45.0%
!!! GGGAATGTTTTTAGGTTCCC+TGG - chr3_4:30687124-30687143 Msa0497500:intron 45.0%
GTTGGCAGTGTTGTCAATTG+CGG - chr3_4:30687311-30687330 Msa0497500:intron 45.0%
GCACCAGCACTTTAGATTGA+AGG - chr3_4:30687513-30687532 Msa0497500:intron 45.0%
! ACGCCTTCAATCTAAAGTGC+TGG + chr3_4:30687519-30687538 None:intergenic 45.0%
! CTTTAGATTGAAGGCGTGTC+CGG - chr3_4:30687522-30687541 Msa0497500:intron 45.0%
!!! GTGTTTTTGGTGTCAGTCAC+CGG + chr3_4:30687544-30687563 None:intergenic 45.0%
CACACACGTAGGGTTAAAAG+TGG + chr3_4:30687753-30687772 None:intergenic 45.0%
GATAATGCCAGGTTGCTAGT+TGG - chr3_4:30687826-30687845 Msa0497500:intron 45.0%
TAATGCCAGGTTGCTAGTTG+GGG - chr3_4:30687828-30687847 Msa0497500:intron 45.0%
!! AGAGGTGTTCCTGCAATCAT+TGG - chr3_4:30687936-30687955 Msa0497500:intron 45.0%
CCAAGAACACCAATGATTGC+AGG + chr3_4:30687948-30687967 None:intergenic 45.0%
! CCTGCAATCATTGGTGTTCT+TGG - chr3_4:30687945-30687964 Msa0497500:intron 45.0%
!!! TCCTTCTGGAGCTTTTGACA+TGG - chr3_4:30687986-30688005 Msa0497500:intron 45.0%
TTCTCGCTGCTTGATTCCAT+GGG - chr3_4:30688016-30688035 Msa0497500:intron 45.0%
TTGATTCCATGGGGTGCAAA+CGG - chr3_4:30688026-30688045 Msa0497500:intron 45.0%
! ATCGTTTTATAACGAGGCCG+AGG + chr3_4:30688122-30688141 None:intergenic 45.0%
GAGTCGGTCCAAACAAATAC+AGG + chr3_4:30688166-30688185 None:intergenic 45.0%
AACCACCAGGTCTAAGAACT+CGG + chr3_4:30688289-30688308 None:intergenic 45.0%
TTCTTAGACCTGGTGGTTAC+TGG - chr3_4:30688291-30688310 Msa0497500:intron 45.0%
!! GAAAGTATCCAGTAACCACC+AGG + chr3_4:30688302-30688321 None:intergenic 45.0%
GGTGGTTACTGGATACTTTC+TGG - chr3_4:30688302-30688321 Msa0497500:intron 45.0%
! TTTCTGGTCCTCCAATCAAC+TGG - chr3_4:30688318-30688337 Msa0497500:intron 45.0%
GTCCATGTTGACACAGAATC+TGG + chr3_4:30688654-30688673 None:intergenic 45.0%
! TGGCATGTTTCTACCGTAAG+TGG - chr3_4:30688756-30688775 Msa0497500:CDS 45.0%
!! CTTCATATTGAAGGCGTCTC+CGG - chr3_4:30688945-30688964 Msa0497500:intron 45.0%
TGTCTGACATGTTCAGACAC+CGG + chr3_4:30688967-30688986 None:intergenic 45.0%
ATGTCAGACACTGACACATG+TGG - chr3_4:30688977-30688996 Msa0497500:intron 45.0%
GTCCATAATCCAAAGGGTAG+GGG + chr3_4:30689133-30689152 None:intergenic 45.0%
GGTCCATAATCCAAAGGGTA+GGG + chr3_4:30689134-30689153 None:intergenic 45.0%
TGGTCCATAATCCAAAGGGT+AGG + chr3_4:30689135-30689154 None:intergenic 45.0%
CCCTTTGGATTATGGACCAT+TGG - chr3_4:30689136-30689155 Msa0497500:intron 45.0%
GTAACTCCTGCTAAACCTAG+TGG - chr3_4:30689218-30689237 Msa0497500:intron 45.0%
! ACATTGAGTCTCTCTGGGAA+TGG + chr3_4:30689254-30689273 None:intergenic 45.0%
GGAACAACATTGAGTCTCTC+TGG + chr3_4:30689260-30689279 None:intergenic 45.0%
AACAGATCCACTGGTGATTC+TGG + chr3_4:30689285-30689304 None:intergenic 45.0%
GTCCTCCTCAAATAACTGTG+TGG + chr3_4:30689318-30689337 None:intergenic 45.0%
TTGAGGAGGACAACCGATTA+TGG - chr3_4:30689327-30689346 Msa0497500:intron 45.0%
CCCTGGATTCTCCCAAATTA+TGG - chr3_4:30689453-30689472 Msa0497500:intron 45.0%
CCCATAATTTGGGAGAATCC+AGG + chr3_4:30689457-30689476 None:intergenic 45.0%
ACGCTCGAATATAACGCCAA+GGG + chr3_4:30689516-30689535 None:intergenic 45.0%
ATGCCTTGAGGAGAGTTACA+CGG - chr3_4:30690263-30690282 Msa0497500:intron 45.0%
! AACTTTTGCGTAGCACTCAG+GGG + chr3_4:30690469-30690488 None:intergenic 45.0%
! GAACTTTTGCGTAGCACTCA+GGG + chr3_4:30690470-30690489 None:intergenic 45.0%
! TGAACTTTTGCGTAGCACTC+AGG + chr3_4:30690471-30690490 None:intergenic 45.0%
GTCAAACCTAAATGCGGAGA+AGG - chr3_4:30690568-30690587 Msa0497500:intron 45.0%
! GGGCAATCAGCATTTGTTAC+CGG - chr3_4:30690883-30690902 Msa0497500:CDS 45.0%
! GGCAATCAGCATTTGTTACC+GGG - chr3_4:30690884-30690903 Msa0497500:CDS 45.0%
AGACACTGCAGTAGAAACCA+TGG - chr3_4:30691426-30691445 Msa0497500:CDS 45.0%
GTGAGGCCTAATTCAAGATG+AGG + chr3_4:30691543-30691562 None:intergenic 45.0%
AGTAGTGCTTCATCACAGTG+AGG + chr3_4:30691560-30691579 None:intergenic 45.0%
TGGAGATGGACCGTATCTTA+CGG - chr3_4:30691658-30691677 Msa0497500:intron 45.0%
CGGAATATAACTGCTCCTTC+AGG + chr3_4:30691684-30691703 None:intergenic 45.0%
CCACAAGCTCATAGTGATAC+CGG - chr3_4:30691850-30691869 Msa0497500:intron 45.0%
AGCTCATAGTGATACCGGAA+TGG - chr3_4:30691855-30691874 Msa0497500:intron 45.0%
!! AATTTAAAGAAAAAAAAAAT+GGG + chr3_4:30686227-30686246 None:intergenic 5.0%
!! AAATTTAAAGAAAAAAAAAA+TGG + chr3_4:30686228-30686247 None:intergenic 5.0%
ATGGGTCTCCGAAAAGTTCG+AGG + chr3_4:30685963-30685982 None:intergenic 50.0%
GTTGCGTTGTGATGAAGGTG+GGG + chr3_4:30686114-30686133 None:intergenic 50.0%
CGTTGCGTTGTGATGAAGGT+GGG + chr3_4:30686115-30686134 None:intergenic 50.0%
GTTGCGTTGCGTTGTGATGA+AGG + chr3_4:30686119-30686138 None:intergenic 50.0%
GCCTCCTCAACCACAATTTG+GGG + chr3_4:30686447-30686466 None:intergenic 50.0%
ACTCACCATGACAATGACGC+TGG - chr3_4:30686803-30686822 Msa0497500:CDS 50.0%
TCGATGTAGCTATCGTCGCA+AGG + chr3_4:30686869-30686888 None:intergenic 50.0%
TCATTGCCCTCGCTTGATCA+TGG + chr3_4:30686904-30686923 None:intergenic 50.0%
CGTAGAATACCCTCTAGGTG+CGG + chr3_4:30687002-30687021 None:intergenic 50.0%
AACGGCGTAGAATACCCTCT+AGG + chr3_4:30687007-30687026 None:intergenic 50.0%
GGTATTCTACGCCGTTTCCT+TGG - chr3_4:30687011-30687030 Msa0497500:intron 50.0%
CGACTCTTAGGCCAAGGAAA+CGG + chr3_4:30687025-30687044 None:intergenic 50.0%
CAAGAGCCTGACAGTTGAGA+AGG - chr3_4:30687075-30687094 Msa0497500:intron 50.0%
!!! GTTTTTAGGTTCCCTGGTGG+AGG - chr3_4:30687130-30687149 Msa0497500:intron 50.0%
GAAACTGAGTTCCTCCACCA+GGG + chr3_4:30687144-30687163 None:intergenic 50.0%
TGGAGGAACTCAGTTTCCTC+AGG - chr3_4:30687147-30687166 Msa0497500:intron 50.0%
GGAGGAACTCAGTTTCCTCA+GGG - chr3_4:30687148-30687167 Msa0497500:intron 50.0%
ATGTAAGCATCAGCACCCTG+AGG + chr3_4:30687166-30687185 None:intergenic 50.0%
GCTACATGCACACACACGTA+GGG + chr3_4:30687763-30687782 None:intergenic 50.0%
AGCTACATGCACACACACGT+AGG + chr3_4:30687764-30687783 None:intergenic 50.0%
TGTGCTTCATGAGAGTCCCT+TGG + chr3_4:30687897-30687916 None:intergenic 50.0%
GCCATGTCAAAAGCTCCAGA+AGG + chr3_4:30687990-30688009 None:intergenic 50.0%
GTTCTCGCTGCTTGATTCCA+TGG - chr3_4:30688015-30688034 Msa0497500:intron 50.0%
TCTCGCTGCTTGATTCCATG+GGG - chr3_4:30688017-30688036 Msa0497500:intron 50.0%
!! CGCAGGTGGATTGTACATGA+AGG - chr3_4:30688256-30688275 Msa0497500:intron 50.0%
GTTGACCGAGTTCTTAGACC+TGG - chr3_4:30688281-30688300 Msa0497500:intron 50.0%
ACGTCCTGAAGATGAGCTTG+AGG - chr3_4:30688364-30688383 Msa0497500:intron 50.0%
TCCTGAAGATGAGCTTGAGG+AGG - chr3_4:30688367-30688386 Msa0497500:intron 50.0%
TCCTCCTCAAGCTCATCTTC+AGG + chr3_4:30688371-30688390 None:intergenic 50.0%
ATGAGCTTGAGGAGGAGCAA+AGG - chr3_4:30688375-30688394 Msa0497500:intron 50.0%
!! AGGTTGGGACTAGCCACTTA+CGG + chr3_4:30688772-30688791 None:intergenic 50.0%
AGCCCCTACCCTTTGGATTA+TGG - chr3_4:30689128-30689147 Msa0497500:intron 50.0%
CATGCACCACTAGGTTTAGC+AGG + chr3_4:30689227-30689246 None:intergenic 50.0%
CTGCTAAACCTAGTGGTGCA+TGG - chr3_4:30689225-30689244 Msa0497500:intron 50.0%
AATGGCTTCCATGCACCACT+AGG + chr3_4:30689236-30689255 None:intergenic 50.0%
GTTCCTACCAGAATCACCAG+TGG - chr3_4:30689275-30689294 Msa0497500:intron 50.0%
GATCCACTGGTGATTCTGGT+AGG + chr3_4:30689281-30689300 None:intergenic 50.0%
TACGTGAGGAACAGATCCAC+TGG + chr3_4:30689294-30689313 None:intergenic 50.0%
CACGCTCGAATATAACGCCA+AGG + chr3_4:30689517-30689536 None:intergenic 50.0%
CTTGGCGTTATATTCGAGCG+TGG - chr3_4:30689515-30689534 Msa0497500:intron 50.0%
CCTTACCCTTCTCCGCATTT+AGG + chr3_4:30690577-30690596 None:intergenic 50.0%
CCTAAATGCGGAGAAGGGTA+AGG - chr3_4:30690574-30690593 Msa0497500:intron 50.0%
GGACAAAGCATACAACCCCA+AGG - chr3_4:30690933-30690952 Msa0497500:CDS 50.0%
AAGCCTTCTCCACATATCCG+AGG - chr3_4:30691238-30691257 Msa0497500:CDS 50.0%
AGTCCTCGGATATGTGGAGA+AGG + chr3_4:30691244-30691263 None:intergenic 50.0%
CTCCTTCAGGCCGTAAGATA+CGG + chr3_4:30691671-30691690 None:intergenic 50.0%
TCAGCACACCAACCTGATCT+CGG + chr3_4:30691704-30691723 None:intergenic 50.0%
! AGGTCTTGTATGCCGTCAAG+CGG - chr3_4:30691805-30691824 Msa0497500:intron 50.0%
CCGGTATCACTATGAGCTTG+TGG + chr3_4:30691853-30691872 None:intergenic 50.0%
GCGTTGCGTTGTGATGAAGG+TGG + chr3_4:30686116-30686135 None:intergenic 55.0%
CACAACGCAACGCAACGCAA+CGG - chr3_4:30686123-30686142 Msa0497500:three_prime_UTR 55.0%
TGACAACGCGGCCACAATTG+AGG + chr3_4:30686332-30686351 None:intergenic 55.0%
ATGAACGCGGCCCCAAATTG+TGG - chr3_4:30686434-30686453 Msa0497500:CDS 55.0%
GCCCCAAATTGTGGTTGAGG+AGG - chr3_4:30686443-30686462 Msa0497500:CDS 55.0%
GCGTTCCAGCGTCATTGTCA+TGG + chr3_4:30686811-30686830 None:intergenic 55.0%
ACCCTGCCATGATCAAGCGA+GGG - chr3_4:30686895-30686914 Msa0497500:intron 55.0%
TGTCTCATAGCCGCACCTAG+AGG - chr3_4:30686989-30687008 Msa0497500:intron 55.0%
GTCTCATAGCCGCACCTAGA+GGG - chr3_4:30686990-30687009 Msa0497500:intron 55.0%
GCACAGCCTTCTCAACTGTC+AGG + chr3_4:30687084-30687103 None:intergenic 55.0%
GGAAACTGAGTTCCTCCACC+AGG + chr3_4:30687145-30687164 None:intergenic 55.0%
TTGCTCATTGTGAGCAGCCC+TGG - chr3_4:30687469-30687488 Msa0497500:intron 55.0%
CTCGACATCAGACAGAGGCA+CGG + chr3_4:30687635-30687654 None:intergenic 55.0%
GAAGCCTCGACATCAGACAG+AGG + chr3_4:30687640-30687659 None:intergenic 55.0%
ATGCTCCCCAACTAGCAACC+TGG + chr3_4:30687836-30687855 None:intergenic 55.0%
TTCTCACCGTTTGCACCCCA+TGG + chr3_4:30688035-30688054 None:intergenic 55.0%
GACCGAGTTCTTAGACCTGG+TGG - chr3_4:30688284-30688303 Msa0497500:intron 55.0%
GGAAGAACAACTACCGAGCG+TGG - chr3_4:30688339-30688358 Msa0497500:intron 55.0%
ACCAGACACAACACTGCCAC+TGG + chr3_4:30689037-30689056 None:intergenic 55.0%
TACTGTCAGCCCCTACCCTT+TGG - chr3_4:30689121-30689140 Msa0497500:intron 55.0%
!! GGGGAGGTATCGCAATGTGA+TGG - chr3_4:30689397-30689416 Msa0497500:intron 55.0%
! TGGAAGTTTTGCTGCTGCCC+TGG - chr3_4:30689436-30689455 Msa0497500:intron 55.0%
! TACTGGCTATGGCCATCTGC+TGG - chr3_4:30689852-30689871 Msa0497500:intron 55.0%
TGGCCGTGTAACTCTCCTCA+AGG + chr3_4:30690269-30690288 None:intergenic 55.0%
AGGGACAGCTCAAGACACGA+TGG - chr3_4:30690671-30690690 Msa0497500:intron 55.0%
GACAGCTCAAGACACGATGG+AGG - chr3_4:30690674-30690693 Msa0497500:intron 55.0%
GTGGAGAAGGCTTCACACCT+GGG + chr3_4:30691231-30691250 None:intergenic 55.0%
TGTGGAGAAGGCTTCACACC+TGG + chr3_4:30691232-30691251 None:intergenic 55.0%
GACCGTATCTTACGGCCTGA+AGG - chr3_4:30691666-30691685 Msa0497500:intron 55.0%
TGTATGCCGTCAAGCGGTAC+TGG - chr3_4:30691811-30691830 Msa0497500:intron 55.0%
GTATGCCGTCAAGCGGTACT+GGG - chr3_4:30691812-30691831 Msa0497500:intron 55.0%
TGCAACCCAGTACCGCTTGA+CGG + chr3_4:30691820-30691839 None:intergenic 55.0%
GCGGCCCCAAATTGTGGTTG+AGG - chr3_4:30686440-30686459 Msa0497500:CDS 60.0%
ATGGCGACGAAAGGGAACCC+TGG - chr3_4:30686608-30686627 Msa0497500:intron 60.0%
CACCCTGCCATGATCAAGCG+AGG - chr3_4:30686894-30686913 Msa0497500:intron 60.0%
GCCCTCGCTTGATCATGGCA+GGG + chr3_4:30686899-30686918 None:intergenic 60.0%
TGCCCTCGCTTGATCATGGC+AGG + chr3_4:30686900-30686919 None:intergenic 60.0%
CGTGCCTCTGTCTGATGTCG+AGG - chr3_4:30687633-30687652 Msa0497500:intron 60.0%
CTTCAGGACGTTGCCACGCT+CGG + chr3_4:30688355-30688374 None:intergenic 60.0%
GCCAGTGGCAGTGTTGTGTC+TGG - chr3_4:30689033-30689052 Msa0497500:intron 60.0%
! GTCAAGCGGTACTGGGTTGC+AGG - chr3_4:30691819-30691838 Msa0497500:intron 60.0%
!! CGGCACTGACATGCCGACAC+AGG + chr3_4:30687615-30687634 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 30685946 30692152 30685946 ID=Msa0497500;Name=Msa0497500
chr3_4 mRNA 30685946 30692152 30685946 ID=Msa0497500-mRNA-1;Parent=Msa0497500;Name=Msa0497500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=258|1|1|1|0.71|0.5|8|262|606
chr3_4 exon 30685946 30686205 30685946 ID=Msa0497500-mRNA-1:exon:6882;Parent=Msa0497500-mRNA-1
chr3_4 exon 30686233 30686463 30686233 ID=Msa0497500-mRNA-1:exon:6881;Parent=Msa0497500-mRNA-1
chr3_4 exon 30686788 30686865 30686788 ID=Msa0497500-mRNA-1:exon:6880;Parent=Msa0497500-mRNA-1
chr3_4 exon 30688537 30688902 30688537 ID=Msa0497500-mRNA-1:exon:6879;Parent=Msa0497500-mRNA-1
chr3_4 exon 30689549 30689837 30689549 ID=Msa0497500-mRNA-1:exon:6878;Parent=Msa0497500-mRNA-1
chr3_4 exon 30690051 30690261 30690051 ID=Msa0497500-mRNA-1:exon:6877;Parent=Msa0497500-mRNA-1
chr3_4 exon 30690843 30691535 30690843 ID=Msa0497500-mRNA-1:exon:6876;Parent=Msa0497500-mRNA-1
chr3_4 exon 30691940 30692152 30691940 ID=Msa0497500-mRNA-1:exon:6875;Parent=Msa0497500-mRNA-1
chr3_4 five_prime_UTR 30691940 30692152 30691940 ID=Msa0497500-mRNA-1:five_prime_utr;Parent=Msa0497500-mRNA-1
chr3_4 five_prime_UTR 30691491 30691535 30691491 ID=Msa0497500-mRNA-1:five_prime_utr;Parent=Msa0497500-mRNA-1
chr3_4 CDS 30690843 30691490 30690843 ID=Msa0497500-mRNA-1:cds;Parent=Msa0497500-mRNA-1
chr3_4 CDS 30690051 30690261 30690051 ID=Msa0497500-mRNA-1:cds;Parent=Msa0497500-mRNA-1
chr3_4 CDS 30689549 30689837 30689549 ID=Msa0497500-mRNA-1:cds;Parent=Msa0497500-mRNA-1
chr3_4 CDS 30688537 30688902 30688537 ID=Msa0497500-mRNA-1:cds;Parent=Msa0497500-mRNA-1
chr3_4 CDS 30686788 30686865 30686788 ID=Msa0497500-mRNA-1:cds;Parent=Msa0497500-mRNA-1
chr3_4 CDS 30686235 30686463 30686235 ID=Msa0497500-mRNA-1:cds;Parent=Msa0497500-mRNA-1
chr3_4 three_prime_UTR 30686233 30686234 30686233 ID=Msa0497500-mRNA-1:three_prime_utr;Parent=Msa0497500-mRNA-1
chr3_4 three_prime_UTR 30685946 30686205 30685946 ID=Msa0497500-mRNA-1:three_prime_utr;Parent=Msa0497500-mRNA-1
Gene Sequence

>Msa0497500

ATGGCGACGAAAGGGAACCCTGGAGATAATAGAAACAATAAAGGTCCAGTGTCAATTTTCATTGTAGTTGCTTTGTGTGGTTTCTTCTACATATTAGGTTTGTGGCAAAGGAGTGGTTTTGGAAAAGGAGATAGCATTGCTGTTGAGATTACTAAACACACAGATTGTAGTGTTCTCTCTGATCTAAATTACGAAACTCACCATGACAATGACGCTGGAACGCCTGATGATGTCGATGATCAAGTCAAGGAATTCAAGCCTTGCGACGATAGCTACATCGATTACACACCCTGCCATGATCAAGCGAGGGCAATGACGTTTCCCCGAGAGAATATGAATTATAGAGAAAGGCATTGTCCTCCTGAAGAAGAGAAATTGCATTGTCTCATAGCCGCACCTAGAGGGTATTCTACGCCGTTTCCTTGGCCTAAGAGTCGTGATTATGTGCCGTTTGCAAACGCGCCTTACAAGAGCCTGACAGTTGAGAAGGCTGTGCAGAATTGGATACAGTATGAAGGGAATGTTTTTAGGTTCCCTGGTGGAGGAACTCAGTTTCCTCAGGGTGCTGATGCTTACATTAATCAACTTGCAAGTGTTATTCCATTGGATAATGGTATGATTAGAACTGCATTAGATACTGGTTGTGGGGTTGCTAGTTGGGGAGCATATTTGTTCAAGAAAAATGTTATTGCAATGTCAATTGCACCAAGGGACTCTCATGAAGCACAAGTTCAATTTGCTTTGGAAAGAGGTGTTCCTGCAATCATTGGTGTTCTTGGAACAATTATGCTGCCTTTTCCTTCTGGAGCTTTTGACATGGCACATTGTTCTCGCTGCTTGATTCCATGGGGTGCAAACGGTGGATTGTACATGAAGGAAGTTGACCGAGTTCTTAGACCTGGTGGTTACTGGATACTTTCTGGTCCTCCAATCAACTGGAAGAACAACTACCGAGCGTGGCAACGTCCTGAAGATGAGCTTGAGGAGGAGCAAAGGCAAATTGAGAACACTGCTAAACTTCTTTGCTGGGAAAAGAAACACGAGAAAGGTGAAATTGCGATCTGGAGAAAAGCATTAAACATTGATGAATGCGGTGAGCAAGATACTCAACCTACAATATGTGAATCCGCAAATTCTGATGATATCTGGTACAAGAAGATGGACAATTGTGTAACTCCTGCTAAACCTAGTGGTGCATGGAAGCCATTCCCAGAGAGACTCAATGTTGTTCCTACCAGAATCACCAGTGGATCTGTTCCTCACGTATCCACACAGTTATTTGAGGAGGACAACCGATTATGGAAGAAACATGTGAATGCTTACAAGCGGGTTAACAAAATTATTGACTCGGGGAGGTATCGCAATGTGATGGACATGAATGCTGGTTTTGGAAGTTTTGCTGCTGCCCTGGATTCTCCCAAATTATGGGTTATGAATGTCGTGCCTACAATATCTGAGAAAGCTACCCTTGGCGTTATATTCGAGCGTGGATTGATTGGAATTTATCATGATTGGTGTGAAGCCTTCTCCACATATCCGAGGACTTATGATCTTATCCATGCAAATGGTGTTTTCACCTTGTACAAGAATGCGTGTAATGCAGAAGATATTTTATTGGAGATGGACCGTATCTTACGGCCTGAAGGAGCAGTTATATTCCGAGATCAGGTTGGTGTGCTGAAGCAAGTGAAAAGAATTGCAAAAGGAATGAGATGGAATACAAAAATGGTGGATCATGAGGATGGTCCACTTATTTCAGAAAAGGTCTTGTATGCCGTCAAGCGGTACTGGGTTGCAGGTGACAACACCACAAGCTCATAG
Protein sequence

>Msa0497500

MATKGNPGDNRNNKGPVSIFIVVALCGFFYILGLWQRSGFGKGDSIAVEITKHTDCSVLSDLNYETHHDNDAGTPDDVDDQVKEFKPCDDSYIDYTPCHDQARAMTFPRENMNYRERHCPPEEEKLHCLIAAPRGYSTPFPWPKSRDYVPFANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPQGADAYINQLASVIPLDNGMIRTALDTGCGVASWGAYLFKKNVIAMSIAPRDSHEAQVQFALERGVPAIIGVLGTIMLPFPSGAFDMAHCSRCLIPWGANGGLYMKEVDRVLRPGGYWILSGPPINWKNNYRAWQRPEDELEEEQRQIENTAKLLCWEKKHEKGEIAIWRKALNIDECGEQDTQPTICESANSDDIWYKKMDNCVTPAKPSGAWKPFPERLNVVPTRITSGSVPHVSTQLFEEDNRLWKKHVNAYKRVNKIIDSGRYRNVMDMNAGFGSFAAALDSPKLWVMNVVPTISEKATLGVIFERGLIGIYHDWCEAFSTYPRTYDLIHANGVFTLYKNACNAEDILLEMDRILRPEGAVIFRDQVGVLKQVKRIAKGMRWNTKMVDHEDGPLISEKVLYAVKRYWVAGDNTTSS*