Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102110 | XP_027188904.1 | 48.230 | 226 | 56 | 7 | 10 | 176 | 65 | 288 | 8.29e-47 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102110 | A0A3Q7X5E5 | 48.230 | 226 | 56 | 7 | 10 | 176 | 65 | 288 | 3.96e-47 | 165 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0993190 | Msa1102110 | 0.816093 | 6.605760e-52 | -8.615850e-47 |
| Msa1101910 | Msa1102110 | 0.816052 | 6.745143e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1102110 | MtrunA17_Chr7g0231021 | 45.946 | 222 | 60 | 5 | 11 | 174 | 10 | 229 | 4.97e-47 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAAGAAATTGAAAATTT+TGG | 0.050507 | 7_3:-34157159 | None:intergenic |
| AGTAACCACCAAGCCATTAT+TGG | 0.262755 | 7_3:-34157196 | None:intergenic |
| TGGATATGCTCTTTATATCT+TGG | 0.305673 | 7_3:-34156807 | None:intergenic |
| AAGATAGAGTCTTCAAATTC+AGG | 0.329055 | 7_3:-34157084 | None:intergenic |
| GAATGGTTGATCGGCTTAAC+AGG | 0.351919 | 7_3:+34155644 | None:intergenic |
| GATCTAGCAAATTCCAATAA+TGG | 0.375632 | 7_3:+34157183 | Msa1102110:CDS |
| TCAGAATCATTAACAAGAAC+TGG | 0.378002 | 7_3:-34156751 | None:intergenic |
| TGTGTGACATGAAGTTTAAT+TGG | 0.394338 | 7_3:+34157133 | Msa1102110:CDS |
| TGAATTTGAAGACTCTATCT+TGG | 0.404281 | 7_3:+34157086 | Msa1102110:CDS |
| TGATTCTGATGTTGTTAGAA+AGG | 0.424151 | 7_3:+34156765 | Msa1102110:CDS |
| AATGAAGAAGTCTCTTAAAC+CGG | 0.439906 | 7_3:+34157278 | Msa1102110:CDS |
| ATCAGGTTCATCACTTCTAA+TGG | 0.446507 | 7_3:+34156723 | Msa1102110:CDS |
| TTTGTGTTTAGCTCTAATAC+AGG | 0.448926 | 7_3:-34157318 | None:intergenic |
| GGATTATCAAATAGATAATC+CGG | 0.459111 | 7_3:-34157297 | None:intergenic |
| AGCAAATTCCAATAATGGCT+TGG | 0.489888 | 7_3:+34157188 | Msa1102110:CDS |
| AGATAGAGTCTTCAAATTCA+GGG | 0.508885 | 7_3:-34157083 | None:intergenic |
| TAATCAGAGTTTAGTACAAT+CGG | 0.513911 | 7_3:+34157371 | Msa1102110:CDS |
| TTGGTGTTGGAATGGTTGAT+CGG | 0.529819 | 7_3:+34155635 | None:intergenic |
| TCTCGATTCAACTTCATGAA+AGG | 0.532761 | 7_3:+34156859 | Msa1102110:CDS |
| CTCTCAAACTTATTGACACA+GGG | 0.544383 | 7_3:-34157050 | None:intergenic |
| AAATTCCAATAATGGCTTGG+TGG | 0.556308 | 7_3:+34157191 | Msa1102110:CDS |
| TAGACGTGTAGAAGAATCTG+AGG | 0.588865 | 7_3:-34157226 | None:intergenic |
| TTGCTTATAAATGTGACTTG+TGG | 0.588984 | 7_3:-34156827 | None:intergenic |
| TCTCTCAAACTTATTGACAC+AGG | 0.599143 | 7_3:-34157051 | None:intergenic |
| TCAGAGTTTAGTACAATCGG+TGG | 0.617720 | 7_3:+34157374 | Msa1102110:CDS |
| ACGTCTAAAAGTTAAGTACA+AGG | 0.623410 | 7_3:+34157242 | Msa1102110:CDS |
| AGACGTGTAGAAGAATCTGA+GGG | 0.671591 | 7_3:-34157225 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTAAATTTATTGCTT+TGG | - | chr7_3:34155697-34155716 | None:intergenic | 10.0% |
| !!! | AAATATAATTTTTTACATGT+TGG | + | chr7_3:34156976-34156995 | Msa1102110:intron | 10.0% |
| !!! | AATATAATTTTTTACATGTT+GGG | + | chr7_3:34156977-34156996 | Msa1102110:intron | 10.0% |
| !! | TTATATTAAATTTATTGCTT+TGG | - | chr7_3:34155697-34155716 | None:intergenic | 10.0% |
| !!! | AAATATAATTTTTTACATGT+TGG | + | chr7_3:34156976-34156995 | Msa1102110:intron | 10.0% |
| !!! | AATATAATTTTTTACATGTT+GGG | + | chr7_3:34156977-34156996 | Msa1102110:intron | 10.0% |
| !! | AAAAATTAAATTTATTGCCT+TGG | - | chr7_3:34155737-34155756 | None:intergenic | 15.0% |
| !! | AAAAAAATTGGATGATATAT+TGG | - | chr7_3:34155819-34155838 | None:intergenic | 15.0% |
| !! | AATGATTAAAAGAAAAAGAA+TGG | + | chr7_3:34155913-34155932 | Msa1102110:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr7_3:34155947-34155966 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr7_3:34155946-34155965 | Msa1102110:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr7_3:34155970-34155989 | Msa1102110:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr7_3:34156073-34156092 | Msa1102110:intron | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | + | chr7_3:34156343-34156362 | Msa1102110:intron | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | - | chr7_3:34156343-34156362 | None:intergenic | 15.0% |
| !!! | AATTTGCTTATAAAAAGAAA+CGG | + | chr7_3:34156441-34156460 | Msa1102110:intron | 15.0% |
| !! | GAAAGAAAAAAAAAAATACT+TGG | - | chr7_3:34156615-34156634 | None:intergenic | 15.0% |
| !! | AAAAATTAAATTTATTGCCT+TGG | - | chr7_3:34155737-34155756 | None:intergenic | 15.0% |
| !! | AAAAAAATTGGATGATATAT+TGG | - | chr7_3:34155819-34155838 | None:intergenic | 15.0% |
| !! | AATGATTAAAAGAAAAAGAA+TGG | + | chr7_3:34155913-34155932 | Msa1102110:intron | 15.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr7_3:34155947-34155966 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr7_3:34155946-34155965 | Msa1102110:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr7_3:34155970-34155989 | Msa1102110:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr7_3:34156073-34156092 | Msa1102110:intron | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | + | chr7_3:34156343-34156362 | Msa1102110:intron | 15.0% |
| !!! | ATAAGCAAATTTTACTTTTT+AGG | - | chr7_3:34156343-34156362 | None:intergenic | 15.0% |
| !!! | AATTTGCTTATAAAAAGAAA+CGG | + | chr7_3:34156441-34156460 | Msa1102110:intron | 15.0% |
| !! | GAAAGAAAAAAAAAAATACT+TGG | - | chr7_3:34156615-34156634 | None:intergenic | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr7_3:34155956-34155975 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr7_3:34156033-34156052 | Msa1102110:intron | 20.0% |
| !! | TATACTAAATAATATATGCG+TGG | - | chr7_3:34156301-34156320 | None:intergenic | 20.0% |
| !! | CATCAAATTAATGATTTATG+TGG | + | chr7_3:34156368-34156387 | Msa1102110:intron | 20.0% |
| !! | AAAATGTGATATTATTGCTT+GGG | - | chr7_3:34156485-34156504 | None:intergenic | 20.0% |
| !!! | ACTTTAGAAAGAAAATAAGT+TGG | - | chr7_3:34156561-34156580 | None:intergenic | 20.0% |
| !!! | CCAAAGAAATTGAAAATTTT+GGG | - | chr7_3:34157161-34157180 | None:intergenic | 20.0% |
| !!! | AAAATTTTCAATTTCTTTGG+CGG | + | chr7_3:34157161-34157180 | Msa1102110:CDS | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr7_3:34155956-34155975 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr7_3:34156033-34156052 | Msa1102110:intron | 20.0% |
| !! | TATACTAAATAATATATGCG+TGG | - | chr7_3:34156301-34156320 | None:intergenic | 20.0% |
| !! | CATCAAATTAATGATTTATG+TGG | + | chr7_3:34156368-34156387 | Msa1102110:intron | 20.0% |
| !! | AAAATGTGATATTATTGCTT+GGG | - | chr7_3:34156485-34156504 | None:intergenic | 20.0% |
| !!! | ACTTTAGAAAGAAAATAAGT+TGG | - | chr7_3:34156561-34156580 | None:intergenic | 20.0% |
| !!! | CCAAAGAAATTGAAAATTTT+GGG | - | chr7_3:34157161-34157180 | None:intergenic | 20.0% |
| !!! | AAAATTTTCAATTTCTTTGG+CGG | + | chr7_3:34157161-34157180 | Msa1102110:CDS | 20.0% |
| ! | GAAAATGTGATATTATTGCT+TGG | - | chr7_3:34156486-34156505 | None:intergenic | 25.0% |
| ! | TAGAGATAATTAAGTAGCAA+AGG | - | chr7_3:34156645-34156664 | None:intergenic | 25.0% |
| !! | AGATGTATATTTGCTAACTA+GGG | + | chr7_3:34156930-34156949 | Msa1102110:intron | 25.0% |
| !!! | TAATTTTTTACATGTTGGGT+TGG | + | chr7_3:34156981-34157000 | Msa1102110:intron | 25.0% |
| !! | CCCAAAATTTTCAATTTCTT+TGG | + | chr7_3:34157158-34157177 | Msa1102110:CDS | 25.0% |
| !! | GCCAAAGAAATTGAAAATTT+TGG | - | chr7_3:34157162-34157181 | None:intergenic | 25.0% |
| ! | GGATTATCAAATAGATAATC+CGG | - | chr7_3:34157300-34157319 | None:intergenic | 25.0% |
| ! | TAATCAGAGTTTAGTACAAT+CGG | + | chr7_3:34157371-34157390 | Msa1102110:CDS | 25.0% |
| ! | GAAAATGTGATATTATTGCT+TGG | - | chr7_3:34156486-34156505 | None:intergenic | 25.0% |
| ! | TAGAGATAATTAAGTAGCAA+AGG | - | chr7_3:34156645-34156664 | None:intergenic | 25.0% |
| !! | AGATGTATATTTGCTAACTA+GGG | + | chr7_3:34156930-34156949 | Msa1102110:intron | 25.0% |
| !!! | TAATTTTTTACATGTTGGGT+TGG | + | chr7_3:34156981-34157000 | Msa1102110:intron | 25.0% |
| !! | CCCAAAATTTTCAATTTCTT+TGG | + | chr7_3:34157158-34157177 | Msa1102110:CDS | 25.0% |
| !! | GCCAAAGAAATTGAAAATTT+TGG | - | chr7_3:34157162-34157181 | None:intergenic | 25.0% |
| ! | GGATTATCAAATAGATAATC+CGG | - | chr7_3:34157300-34157319 | None:intergenic | 25.0% |
| ! | TAATCAGAGTTTAGTACAAT+CGG | + | chr7_3:34157371-34157390 | Msa1102110:CDS | 25.0% |
| TTGCTTTGGCTAAAAAACAT+AGG | - | chr7_3:34155683-34155702 | None:intergenic | 30.0% | |
| !!! | ATTCCTATGTTTTTTAGCCA+AGG | + | chr7_3:34155677-34155696 | Msa1102110:intron | 30.0% |
| ATTTCACATTAGCCAATGTA+AGG | + | chr7_3:34155763-34155782 | Msa1102110:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr7_3:34156099-34156118 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr7_3:34155865-34155884 | Msa1102110:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr7_3:34156099-34156118 | Msa1102110:intron | 30.0% |
| !!! | TTCAGTGGTTTTTAAAACAG+GGG | - | chr7_3:34156250-34156269 | None:intergenic | 30.0% |
| !!! | GTTCAGTGGTTTTTAAAACA+GGG | - | chr7_3:34156251-34156270 | None:intergenic | 30.0% |
| !!! | TGTTCAGTGGTTTTTAAAAC+AGG | - | chr7_3:34156252-34156271 | None:intergenic | 30.0% |
| AAAAGGAAAACTTTGTTCAG+TGG | - | chr7_3:34156265-34156284 | None:intergenic | 30.0% | |
| CATTCAATTAGTGATGTATG+TGG | - | chr7_3:34156407-34156426 | None:intergenic | 30.0% | |
| TTGCTTATAAAAAGAAACGG+AGG | + | chr7_3:34156444-34156463 | Msa1102110:intron | 30.0% | |
| TGCTTATAAAAAGAAACGGA+GGG | + | chr7_3:34156445-34156464 | Msa1102110:intron | 30.0% | |
| ATATATGAGTGATGAGAACT+TGG | - | chr7_3:34156529-34156548 | None:intergenic | 30.0% | |
| AATGTAGAGATTAAGCAACA+AGG | - | chr7_3:34156585-34156604 | None:intergenic | 30.0% | |
| TCAGAATCATTAACAAGAAC+TGG | - | chr7_3:34156754-34156773 | None:intergenic | 30.0% | |
| TGATTCTGATGTTGTTAGAA+AGG | + | chr7_3:34156765-34156784 | Msa1102110:CDS | 30.0% | |
| TGGATATGCTCTTTATATCT+TGG | - | chr7_3:34156810-34156829 | None:intergenic | 30.0% | |
| TTGCTTATAAATGTGACTTG+TGG | - | chr7_3:34156830-34156849 | None:intergenic | 30.0% | |
| AGTTAGCAAATATACATCTC+TGG | - | chr7_3:34156929-34156948 | None:intergenic | 30.0% | |
| ! | GAGATGTATATTTGCTAACT+AGG | + | chr7_3:34156929-34156948 | Msa1102110:intron | 30.0% |
| AGATAGAGTCTTCAAATTCA+GGG | - | chr7_3:34157086-34157105 | None:intergenic | 30.0% | |
| AAGATAGAGTCTTCAAATTC+AGG | - | chr7_3:34157087-34157106 | None:intergenic | 30.0% | |
| TGAATTTGAAGACTCTATCT+TGG | + | chr7_3:34157086-34157105 | Msa1102110:CDS | 30.0% | |
| TGTGTGACATGAAGTTTAAT+TGG | + | chr7_3:34157133-34157152 | Msa1102110:CDS | 30.0% | |
| GATCTAGCAAATTCCAATAA+TGG | + | chr7_3:34157183-34157202 | Msa1102110:CDS | 30.0% | |
| ACGTCTAAAAGTTAAGTACA+AGG | + | chr7_3:34157242-34157261 | Msa1102110:CDS | 30.0% | |
| AATGAAGAAGTCTCTTAAAC+CGG | + | chr7_3:34157278-34157297 | Msa1102110:CDS | 30.0% | |
| !! | TTTGTGTTTAGCTCTAATAC+AGG | - | chr7_3:34157321-34157340 | None:intergenic | 30.0% |
| TTGCTTTGGCTAAAAAACAT+AGG | - | chr7_3:34155683-34155702 | None:intergenic | 30.0% | |
| !!! | ATTCCTATGTTTTTTAGCCA+AGG | + | chr7_3:34155677-34155696 | Msa1102110:intron | 30.0% |
| ATTTCACATTAGCCAATGTA+AGG | + | chr7_3:34155763-34155782 | Msa1102110:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr7_3:34156099-34156118 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr7_3:34155865-34155884 | Msa1102110:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | + | chr7_3:34156099-34156118 | Msa1102110:intron | 30.0% |
| !!! | TTCAGTGGTTTTTAAAACAG+GGG | - | chr7_3:34156250-34156269 | None:intergenic | 30.0% |
| !!! | GTTCAGTGGTTTTTAAAACA+GGG | - | chr7_3:34156251-34156270 | None:intergenic | 30.0% |
| !!! | TGTTCAGTGGTTTTTAAAAC+AGG | - | chr7_3:34156252-34156271 | None:intergenic | 30.0% |
| AAAAGGAAAACTTTGTTCAG+TGG | - | chr7_3:34156265-34156284 | None:intergenic | 30.0% | |
| CATTCAATTAGTGATGTATG+TGG | - | chr7_3:34156407-34156426 | None:intergenic | 30.0% | |
| TTGCTTATAAAAAGAAACGG+AGG | + | chr7_3:34156444-34156463 | Msa1102110:intron | 30.0% | |
| TGCTTATAAAAAGAAACGGA+GGG | + | chr7_3:34156445-34156464 | Msa1102110:intron | 30.0% | |
| ATATATGAGTGATGAGAACT+TGG | - | chr7_3:34156529-34156548 | None:intergenic | 30.0% | |
| AATGTAGAGATTAAGCAACA+AGG | - | chr7_3:34156585-34156604 | None:intergenic | 30.0% | |
| TCAGAATCATTAACAAGAAC+TGG | - | chr7_3:34156754-34156773 | None:intergenic | 30.0% | |
| TGATTCTGATGTTGTTAGAA+AGG | + | chr7_3:34156765-34156784 | Msa1102110:CDS | 30.0% | |
| TGGATATGCTCTTTATATCT+TGG | - | chr7_3:34156810-34156829 | None:intergenic | 30.0% | |
| TTGCTTATAAATGTGACTTG+TGG | - | chr7_3:34156830-34156849 | None:intergenic | 30.0% | |
| AGTTAGCAAATATACATCTC+TGG | - | chr7_3:34156929-34156948 | None:intergenic | 30.0% | |
| ! | GAGATGTATATTTGCTAACT+AGG | + | chr7_3:34156929-34156948 | Msa1102110:intron | 30.0% |
| AGATAGAGTCTTCAAATTCA+GGG | - | chr7_3:34157086-34157105 | None:intergenic | 30.0% | |
| AAGATAGAGTCTTCAAATTC+AGG | - | chr7_3:34157087-34157106 | None:intergenic | 30.0% | |
| TGAATTTGAAGACTCTATCT+TGG | + | chr7_3:34157086-34157105 | Msa1102110:CDS | 30.0% | |
| TGTGTGACATGAAGTTTAAT+TGG | + | chr7_3:34157133-34157152 | Msa1102110:CDS | 30.0% | |
| GATCTAGCAAATTCCAATAA+TGG | + | chr7_3:34157183-34157202 | Msa1102110:CDS | 30.0% | |
| ACGTCTAAAAGTTAAGTACA+AGG | + | chr7_3:34157242-34157261 | Msa1102110:CDS | 30.0% | |
| AATGAAGAAGTCTCTTAAAC+CGG | + | chr7_3:34157278-34157297 | Msa1102110:CDS | 30.0% | |
| !! | TTTGTGTTTAGCTCTAATAC+AGG | - | chr7_3:34157321-34157340 | None:intergenic | 30.0% |
| TTGCCTTGGCTAAAAAACAT+AGG | - | chr7_3:34155723-34155742 | None:intergenic | 35.0% | |
| ! | GTACTGTGCAGAGTATTAAT+TGG | + | chr7_3:34155995-34156014 | Msa1102110:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr7_3:34155999-34156018 | Msa1102110:intron | 35.0% |
| GATATTATTGCTTGGGAACA+AGG | - | chr7_3:34156478-34156497 | None:intergenic | 35.0% | |
| ATCAGGTTCATCACTTCTAA+TGG | + | chr7_3:34156723-34156742 | Msa1102110:CDS | 35.0% | |
| TCTCGATTCAACTTCATGAA+AGG | + | chr7_3:34156859-34156878 | Msa1102110:CDS | 35.0% | |
| CTCTCAAACTTATTGACACA+GGG | - | chr7_3:34157053-34157072 | None:intergenic | 35.0% | |
| TCTCTCAAACTTATTGACAC+AGG | - | chr7_3:34157054-34157073 | None:intergenic | 35.0% | |
| AGCAAATTCCAATAATGGCT+TGG | + | chr7_3:34157188-34157207 | Msa1102110:CDS | 35.0% | |
| ! | AAATTCCAATAATGGCTTGG+TGG | + | chr7_3:34157191-34157210 | Msa1102110:CDS | 35.0% |
| TTGCCTTGGCTAAAAAACAT+AGG | - | chr7_3:34155723-34155742 | None:intergenic | 35.0% | |
| ! | GTACTGTGCAGAGTATTAAT+TGG | + | chr7_3:34155995-34156014 | Msa1102110:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | chr7_3:34155999-34156018 | Msa1102110:intron | 35.0% |
| GATATTATTGCTTGGGAACA+AGG | - | chr7_3:34156478-34156497 | None:intergenic | 35.0% | |
| ATCAGGTTCATCACTTCTAA+TGG | + | chr7_3:34156723-34156742 | Msa1102110:CDS | 35.0% | |
| TCTCGATTCAACTTCATGAA+AGG | + | chr7_3:34156859-34156878 | Msa1102110:CDS | 35.0% | |
| CTCTCAAACTTATTGACACA+GGG | - | chr7_3:34157053-34157072 | None:intergenic | 35.0% | |
| TCTCTCAAACTTATTGACAC+AGG | - | chr7_3:34157054-34157073 | None:intergenic | 35.0% | |
| AGCAAATTCCAATAATGGCT+TGG | + | chr7_3:34157188-34157207 | Msa1102110:CDS | 35.0% | |
| ! | AAATTCCAATAATGGCTTGG+TGG | + | chr7_3:34157191-34157210 | Msa1102110:CDS | 35.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr7_3:34156103-34156122 | None:intergenic | 40.0% |
| ! | CTGTGCAGAGTATTAATTGG+AGG | + | chr7_3:34155998-34156017 | Msa1102110:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr7_3:34156103-34156122 | Msa1102110:intron | 40.0% |
| TAAAACAGGGGAAGGTAAAG+CGG | - | chr7_3:34156238-34156257 | None:intergenic | 40.0% | |
| !!! | GTGGTTTTTAAAACAGGGGA+AGG | - | chr7_3:34156246-34156265 | None:intergenic | 40.0% |
| ACTTGGTTGCTAATGAAGGA+GGG | - | chr7_3:34156512-34156531 | None:intergenic | 40.0% | |
| AACTTGGTTGCTAATGAAGG+AGG | - | chr7_3:34156513-34156532 | None:intergenic | 40.0% | |
| GAGAACTTGGTTGCTAATGA+AGG | - | chr7_3:34156516-34156535 | None:intergenic | 40.0% | |
| TTCTACGTATGTTGCAGATC+AGG | + | chr7_3:34156706-34156725 | Msa1102110:intron | 40.0% | |
| ! | TTTTCCATATCTTGCTCGTC+AGG | + | chr7_3:34157009-34157028 | Msa1102110:intron | 40.0% |
| TTTCCATATCTTGCTCGTCA+GGG | + | chr7_3:34157010-34157029 | Msa1102110:intron | 40.0% | |
| AGTAACCACCAAGCCATTAT+TGG | - | chr7_3:34157199-34157218 | None:intergenic | 40.0% | |
| AGACGTGTAGAAGAATCTGA+GGG | - | chr7_3:34157228-34157247 | None:intergenic | 40.0% | |
| TAGACGTGTAGAAGAATCTG+AGG | - | chr7_3:34157229-34157248 | None:intergenic | 40.0% | |
| TCAGAGTTTAGTACAATCGG+TGG | + | chr7_3:34157374-34157393 | Msa1102110:CDS | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr7_3:34156103-34156122 | None:intergenic | 40.0% |
| ! | CTGTGCAGAGTATTAATTGG+AGG | + | chr7_3:34155998-34156017 | Msa1102110:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr7_3:34156103-34156122 | Msa1102110:intron | 40.0% |
| TAAAACAGGGGAAGGTAAAG+CGG | - | chr7_3:34156238-34156257 | None:intergenic | 40.0% | |
| !!! | GTGGTTTTTAAAACAGGGGA+AGG | - | chr7_3:34156246-34156265 | None:intergenic | 40.0% |
| ACTTGGTTGCTAATGAAGGA+GGG | - | chr7_3:34156512-34156531 | None:intergenic | 40.0% | |
| AACTTGGTTGCTAATGAAGG+AGG | - | chr7_3:34156513-34156532 | None:intergenic | 40.0% | |
| GAGAACTTGGTTGCTAATGA+AGG | - | chr7_3:34156516-34156535 | None:intergenic | 40.0% | |
| TTCTACGTATGTTGCAGATC+AGG | + | chr7_3:34156706-34156725 | Msa1102110:intron | 40.0% | |
| ! | TTTTCCATATCTTGCTCGTC+AGG | + | chr7_3:34157009-34157028 | Msa1102110:intron | 40.0% |
| TTTCCATATCTTGCTCGTCA+GGG | + | chr7_3:34157010-34157029 | Msa1102110:intron | 40.0% | |
| AGTAACCACCAAGCCATTAT+TGG | - | chr7_3:34157199-34157218 | None:intergenic | 40.0% | |
| AGACGTGTAGAAGAATCTGA+GGG | - | chr7_3:34157228-34157247 | None:intergenic | 40.0% | |
| TAGACGTGTAGAAGAATCTG+AGG | - | chr7_3:34157229-34157248 | None:intergenic | 40.0% | |
| TCAGAGTTTAGTACAATCGG+TGG | + | chr7_3:34157374-34157393 | Msa1102110:CDS | 40.0% | |
| TTAGCCAATGTAAGGTGACG+TGG | + | chr7_3:34155771-34155790 | Msa1102110:intron | 45.0% | |
| TAGCCAATGTAAGGTGACGT+GGG | + | chr7_3:34155772-34155791 | Msa1102110:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr7_3:34156102-34156121 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr7_3:34156102-34156121 | Msa1102110:intron | 45.0% |
| GTGGCAACAACAGAGAGAAA+AGG | - | chr7_3:34156282-34156301 | None:intergenic | 45.0% | |
| TTAGCCAATGTAAGGTGACG+TGG | + | chr7_3:34155771-34155790 | Msa1102110:intron | 45.0% | |
| TAGCCAATGTAAGGTGACGT+GGG | + | chr7_3:34155772-34155791 | Msa1102110:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr7_3:34156102-34156121 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr7_3:34156102-34156121 | Msa1102110:intron | 45.0% |
| GTGGCAACAACAGAGAGAAA+AGG | - | chr7_3:34156282-34156301 | None:intergenic | 45.0% | |
| !! | ATAAAATGATAAAAAAAAAT+TGG | - | chr7_3:34155831-34155850 | None:intergenic | 5.0% |
| !! | ATAAAATGATAAAAAAAAAT+TGG | - | chr7_3:34155831-34155850 | None:intergenic | 5.0% |
| ! | TTGATCGGCTTAACAGGTGC+AGG | + | chr7_3:34155650-34155669 | Msa1102110:intron | 50.0% |
| CAATGTAAGGTGACGTGGGT+GGG | + | chr7_3:34155776-34155795 | Msa1102110:intron | 50.0% | |
| AATGTAAGGTGACGTGGGTG+GGG | + | chr7_3:34155777-34155796 | Msa1102110:intron | 50.0% | |
| ! | GGGGAAGGTAAAGCGGTTTT+GGG | - | chr7_3:34156231-34156250 | None:intergenic | 50.0% |
| ! | AGGGGAAGGTAAAGCGGTTT+TGG | - | chr7_3:34156232-34156251 | None:intergenic | 50.0% |
| CATCCCTGACGAGCAAGATA+TGG | - | chr7_3:34157016-34157035 | None:intergenic | 50.0% | |
| ! | TTGATCGGCTTAACAGGTGC+AGG | + | chr7_3:34155650-34155669 | Msa1102110:intron | 50.0% |
| CAATGTAAGGTGACGTGGGT+GGG | + | chr7_3:34155776-34155795 | Msa1102110:intron | 50.0% | |
| AATGTAAGGTGACGTGGGTG+GGG | + | chr7_3:34155777-34155796 | Msa1102110:intron | 50.0% | |
| ! | GGGGAAGGTAAAGCGGTTTT+GGG | - | chr7_3:34156231-34156250 | None:intergenic | 50.0% |
| ! | AGGGGAAGGTAAAGCGGTTT+TGG | - | chr7_3:34156232-34156251 | None:intergenic | 50.0% |
| CATCCCTGACGAGCAAGATA+TGG | - | chr7_3:34157016-34157035 | None:intergenic | 50.0% | |
| CCACCCACGTCACCTTACAT+TGG | - | chr7_3:34155778-34155797 | None:intergenic | 55.0% | |
| CCAATGTAAGGTGACGTGGG+TGG | + | chr7_3:34155775-34155794 | Msa1102110:intron | 55.0% | |
| CCACCCACGTCACCTTACAT+TGG | - | chr7_3:34155778-34155797 | None:intergenic | 55.0% | |
| CCAATGTAAGGTGACGTGGG+TGG | + | chr7_3:34155775-34155794 | Msa1102110:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 34155646 | 34157404 | 34155646 | ID=Msa1102110;Name=Msa1102110 |
| chr7_3 | mRNA | 34155646 | 34157404 | 34155646 | ID=Msa1102110-mRNA-1;Parent=Msa1102110;Name=Msa1102110-mRNA-1;_AED=0.16;_eAED=0.17;_QI=0|0|0|0.66|1|1|3|0|183 |
| chr7_3 | exon | 34155646 | 34155665 | 34155646 | ID=Msa1102110-mRNA-1:exon:7274;Parent=Msa1102110-mRNA-1 |
| chr7_3 | exon | 34156723 | 34156880 | 34156723 | ID=Msa1102110-mRNA-1:exon:7275;Parent=Msa1102110-mRNA-1 |
| chr7_3 | exon | 34157031 | 34157404 | 34157031 | ID=Msa1102110-mRNA-1:exon:7276;Parent=Msa1102110-mRNA-1 |
| chr7_3 | CDS | 34155646 | 34155665 | 34155646 | ID=Msa1102110-mRNA-1:cds;Parent=Msa1102110-mRNA-1 |
| chr7_3 | CDS | 34156723 | 34156880 | 34156723 | ID=Msa1102110-mRNA-1:cds;Parent=Msa1102110-mRNA-1 |
| chr7_3 | CDS | 34157031 | 34157404 | 34157031 | ID=Msa1102110-mRNA-1:cds;Parent=Msa1102110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
