AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0993190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993190 MtrunA17_Chr6g0476311 99.776 446 1 0 1 446 1 446 0.0 914
Msa0993190 MtrunA17_Chr7g0265741 87.865 445 53 1 2 446 1 444 0.0 817
Msa0993190 MtrunA17_Chr2g0307671 68.636 440 125 8 4 442 64 491 0.0 600
Msa0993190 MtrunA17_Chr5g0447311 58.879 214 84 3 227 440 19 228 7.06e-84 257
Msa0993190 MtrunA17_Chr5g0447301 60.811 222 79 4 5 225 47 261 1.88e-83 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0993190 AT2G36530.1 85.843 445 62 1 2 446 1 444 0.0 794
Msa0993190 AT2G36530.2 86.052 423 58 1 24 446 12 433 0.0 756
Msa0993190 AT1G74030.1 68.793 439 124 7 5 442 51 477 0.0 604
Msa0993190 AT2G29560.1 58.581 437 169 7 5 440 47 472 4.37e-175 499

Find 147 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCACTGGGGCCCTGAATT+TGG 0.171612 6_4:+65619083 None:intergenic
CTATCTGTATAGGTTGTAAT+TGG 0.190342 6_4:-65620500 Msa0993190:intron
CTCCACCGAGGCTCGGAATT+TGG 0.200039 6_4:+65619018 None:intergenic
GATCTGTGTTGCAGCTTCTT+AGG 0.207732 6_4:-65619146 Msa0993190:intron
TGAACTTGCTGTGTTTGTTT+GGG 0.239779 6_4:-65618767 Msa0993190:three_prime_UTR
TTGAACTTGCTGTGTTTGTT+TGG 0.243273 6_4:-65618768 Msa0993190:three_prime_UTR
ATTATAGCACCTGCTCTTCT+TGG 0.246622 6_4:-65621867 Msa0993190:CDS
TCTATGCTGGTTCCAAATTC+AGG 0.255876 6_4:-65619095 Msa0993190:CDS
GCTTGGAGCCAATGCTATTT+TGG 0.259393 6_4:-65621530 Msa0993190:CDS
TGAATTTGATGTGTCTGTTT+GGG 0.281759 6_4:-65618797 Msa0993190:three_prime_UTR
AAGTTTGGCATTGGTATGAT+AGG 0.306803 6_4:-65618609 Msa0993190:three_prime_UTR
TGCAAAACTAACAGCTGAAA+TGG 0.323560 6_4:-65620209 Msa0993190:CDS
CAAGTAAGGACCTGGATATT+AGG 0.325970 6_4:+65620917 None:intergenic
TTGAATTTGATGTGTCTGTT+TGG 0.326978 6_4:-65618798 Msa0993190:three_prime_UTR
ATTGCTAAAGCTGGTTATAC+TGG 0.333785 6_4:-65620594 Msa0993190:CDS
ATTTGGTAGGTGAATCAAAT+TGG 0.356411 6_4:-65619871 Msa0993190:intron
CAATTTCAGTCTGCTTGGTT+GGG 0.359716 6_4:+65621730 None:intergenic
CAGTTTGCGTTAATATCAAT+AGG 0.375306 6_4:+65619059 None:intergenic
AATTTATGATTCTCCCTGTT+GGG 0.378492 6_4:-65621166 Msa0993190:CDS
TCAATTTCAGTCTGCTTGGT+TGG 0.380117 6_4:+65621729 None:intergenic
TTCATTGCTGATCTCTCAGT+TGG 0.386617 6_4:-65619651 Msa0993190:CDS
GTAAATTTACCTTCAACAAA+AGG 0.391944 6_4:+65620004 None:intergenic
ATGTCTGTAAGTTTAAAGTT+TGG 0.399935 6_4:-65618624 Msa0993190:three_prime_UTR
TTGAAAGAAGATGCCCCAAC+AGG 0.406311 6_4:+65621152 None:intergenic
AGCAAGCCTTTCAGATCTGC+AGG 0.409805 6_4:+65619450 None:intergenic
TTTATGGTACAGCAGCTTGA+TGG 0.414709 6_4:-65621702 Msa0993190:CDS
TGTGTTTGTTTGGGGTGGCT+TGG 0.416484 6_4:-65618758 Msa0993190:three_prime_UTR
TATCTGTATAGGTTGTAATT+GGG 0.431536 6_4:-65620499 Msa0993190:intron
GTTCCTAGTGGTGCTTCAAC+AGG 0.432093 6_4:-65623156 Msa0993190:intron
GGTGCTGCAGCAGTCTATGC+TGG 0.437096 6_4:-65619108 Msa0993190:CDS
AGGAAATAAGCTTGCAATGC+AGG 0.439135 6_4:-65621281 Msa0993190:intron
TTGTTTGGGGTGGCTTGGCT+TGG 0.441013 6_4:-65618753 Msa0993190:three_prime_UTR
CTTAGGATTGAGGAGGAGCT+TGG 0.443795 6_4:-65619129 Msa0993190:CDS
ACGAAACTCACTTCGACGGT+TGG 0.447194 6_4:+65623558 None:intergenic
TAATATCAATAGGGCTCCAC+TGG 0.449202 6_4:+65619069 None:intergenic
ATCCATTCGATCAGGATGAC+TGG 0.459395 6_4:-65620240 Msa0993190:CDS
TTTCAAAGAAGCAATGAAGA+TGG 0.461088 6_4:-65621135 Msa0993190:CDS
GATCCTCAATGGACACGATT+GGG 0.469291 6_4:+65620260 None:intergenic
GTTGCAGCTTCTTAGGATTG+AGG 0.472011 6_4:-65619139 Msa0993190:intron
ATTGTCAATTTCAGTCTGCT+TGG 0.475701 6_4:+65621725 None:intergenic
CTTGCTGTGTTTGTTTGGGG+TGG 0.477831 6_4:-65618763 Msa0993190:three_prime_UTR
TCTATGAAGCTCTGGAATTG+AGG 0.480573 6_4:-65622208 Msa0993190:CDS
TAAAGGTGTCTATGAAGCTC+TGG 0.481476 6_4:-65622216 Msa0993190:intron
TAAATTTACCTTCAACAAAA+GGG 0.487915 6_4:+65620005 None:intergenic
CAGCATATTGCAAATCTAGC+TGG 0.489855 6_4:-65621364 Msa0993190:CDS
CATATGTGTGTTGTTTATGA+AGG 0.490661 6_4:+65618644 None:intergenic
GCAAAACTAACAGCTGAAAT+GGG 0.491113 6_4:-65620208 Msa0993190:CDS
GAACTTGCTGTGTTTGTTTG+GGG 0.494744 6_4:-65618766 Msa0993190:three_prime_UTR
AGTTTGCGTTAATATCAATA+GGG 0.496892 6_4:+65619060 None:intergenic
TTAGTAAAGTACCTTTGGGT+TGG 0.497192 6_4:+65620147 None:intergenic
AGTTTGGCATTGGTATGATA+GGG 0.498322 6_4:-65618608 Msa0993190:three_prime_UTR
ACCTCACATACCTTGTATAG+AGG 0.500108 6_4:+65621460 None:intergenic
CTATGAAGCTCTGGAATTGA+GGG 0.502002 6_4:-65622207 Msa0993190:CDS
CATTGAGGATCCATTCGATC+AGG 0.502027 6_4:-65620248 Msa0993190:CDS
AATGTCTAAGCAAGCTGGCT+GGG 0.502638 6_4:-65619818 Msa0993190:CDS
GAATGTCTAAGCAAGCTGGC+TGG 0.507863 6_4:-65619819 Msa0993190:CDS
AACTGTCTGTATAAGAGAAT+AGG 0.508257 6_4:-65618901 Msa0993190:three_prime_UTR
GATGGATCAGAGAAAATCTC+AGG 0.508879 6_4:-65620325 Msa0993190:CDS
GCAAGCTGGCTGGGGTGTCA+TGG 0.510167 6_4:-65619809 Msa0993190:CDS
CTATGCTGGTTCCAAATTCA+GGG 0.511519 6_4:-65619094 Msa0993190:CDS
GTTGATGTTACTCTTAGTGA+TGG 0.511929 6_4:-65623198 Msa0993190:CDS
GGACATTAACCTTCAGATGA+TGG 0.511958 6_4:+65621099 None:intergenic
TGGCTTTGCTCCTAATATCC+AGG 0.513865 6_4:-65620927 Msa0993190:intron
ACCTTATTACAGAATAATGA+TGG 0.513987 6_4:-65620343 Msa0993190:intron
TCTAGCTGGAAACAAGACTT+TGG 0.514170 6_4:-65621350 Msa0993190:CDS
TCACTCGCTGTCTGTAAAGC+TGG 0.515005 6_4:-65621502 Msa0993190:CDS
AACTGAGAGATCAGCAATGA+AGG 0.515032 6_4:+65619653 None:intergenic
GTAAGTTTAAAGTTTGGCAT+TGG 0.515347 6_4:-65618618 Msa0993190:three_prime_UTR
GTACCTTTGGGTTGGTAACA+AGG 0.515621 6_4:+65620155 None:intergenic
CAAACTGCAGCAGTCTGTGC+TGG 0.519957 6_4:-65619043 Msa0993190:three_prime_UTR
ATGGAGGCTCAGACTACCTC+GGG 0.523548 6_4:-65622184 Msa0993190:CDS
GGATCCTCAATGGACACGAT+TGG 0.526288 6_4:+65620259 None:intergenic
AAGACTGCCATTGCTAAAGC+TGG 0.526520 6_4:-65620603 Msa0993190:CDS
TCATTGCTGATCTCTCAGTT+GGG 0.526773 6_4:-65619650 Msa0993190:CDS
TCTATTGATGCTGACAGCAC+GGG 0.527187 6_4:-65618956 Msa0993190:three_prime_UTR
TTCAAAGAAGCAATGAAGAT+GGG 0.527686 6_4:-65621134 Msa0993190:CDS
CTTCGACGGTTGGATTTCCA+CGG 0.529759 6_4:+65623568 None:intergenic
GAATTTATGATTCTCCCTGT+TGG 0.531243 6_4:-65621167 Msa0993190:CDS
CCTCGGGAAAGGTGTTCTTA+AGG 0.534627 6_4:-65622168 Msa0993190:intron
TTCTATTGATGCTGACAGCA+CGG 0.534924 6_4:-65618957 Msa0993190:three_prime_UTR
AATACCTTGCCAAGAAGAGC+AGG 0.535824 6_4:+65621858 None:intergenic
AACAGAGCTCCACCGAGGCT+CGG 0.539730 6_4:+65619011 None:intergenic
ATCAACGGAGGCTCACATGC+AGG 0.542713 6_4:-65621301 Msa0993190:CDS
CTGATCGAATGGATCCTCAA+TGG 0.543203 6_4:+65620249 None:intergenic
AATGTATAGGAAAACAAAGA+AGG 0.543403 6_4:-65620639 Msa0993190:intron
TAAAGCTGGTTATACTGGAA+AGG 0.546336 6_4:-65620589 Msa0993190:intron
ATGTCTAAGCAAGCTGGCTG+GGG 0.548350 6_4:-65619817 Msa0993190:CDS
AGCACCTGCTCTTCTTGGCA+AGG 0.548504 6_4:-65621862 Msa0993190:intron
GAATTTGATTCTTGCAACGA+TGG 0.548573 6_4:-65623634 Msa0993190:exon
ATTTATGATTCTCCCTGTTG+GGG 0.550904 6_4:-65621165 Msa0993190:CDS
GGCTCAGACTACCTCGGGAA+AGG 0.554111 6_4:-65622179 Msa0993190:CDS
GGTCAGCAAGTACAGATAGT+TGG 0.555837 6_4:-65620187 Msa0993190:CDS
GCTACTAATGTGGGTGATGA+AGG 0.562304 6_4:-65620950 Msa0993190:CDS
TGGACAAGACGCTACTAATG+TGG 0.563758 6_4:-65620960 Msa0993190:CDS
GAATTTGATGTGTCTGTTTG+GGG 0.568275 6_4:-65618796 Msa0993190:three_prime_UTR
TGGTTCCAAATTCCGAGCCT+CGG 0.568609 6_4:-65619023 Msa0993190:three_prime_UTR
ATTGATGCTGACAGCACGGG+CGG 0.574869 6_4:-65618953 Msa0993190:three_prime_UTR
CCTTCATTCAATGTTATCAA+CGG 0.575860 6_4:-65621316 Msa0993190:CDS
TCCATTCGATCAGGATGACT+GGG 0.578303 6_4:-65620239 Msa0993190:CDS
TTCTCGAGAAAGTGACAATG+AGG 0.578518 6_4:+65623715 None:intergenic
TAACAGGGTCAGATCAAGAC+GGG 0.580248 6_4:-65619478 Msa0993190:intron
CCGTTGATAACATTGAATGA+AGG 0.584500 6_4:+65621316 None:intergenic
GAGCTCCCTGCAGATCTGAA+AGG 0.586220 6_4:-65619456 Msa0993190:CDS
AATATCAATAGGGCTCCACT+GGG 0.586368 6_4:+65619070 None:intergenic
TTTGATGTGTCTGTTTGGGG+TGG 0.590059 6_4:-65618793 Msa0993190:three_prime_UTR
TCCCAGTCATCCTGATCGAA+TGG 0.592142 6_4:+65620238 None:intergenic
GCTAGAGCTGCTGTTCCTAG+TGG 0.598917 6_4:-65623168 Msa0993190:CDS
TTACCTGTTGAAGCACCACT+AGG 0.600084 6_4:+65623153 None:intergenic
GTGGGGATGGTGCAAGCAGA+AGG 0.600806 6_4:-65621667 Msa0993190:intron
TGACACGGCCAAAATAGCAT+TGG 0.601819 6_4:+65621522 None:intergenic
TTTGATTCTTGCAACGATGG+TGG 0.604372 6_4:-65623631 Msa0993190:exon
GCAGCTTCTTAGGATTGAGG+AGG 0.606769 6_4:-65619136 Msa0993190:intron
CGTCAGATCTTCGATAGCCG+TGG 0.607772 6_4:-65623585 Msa0993190:CDS
GTGAGAATGTCTAAGCAAGC+TGG 0.607822 6_4:-65619823 Msa0993190:CDS
AAAGAAAATTCCTCTATACA+AGG 0.608251 6_4:-65621470 Msa0993190:intron
TGATGGAACTGTTAATGAGT+GGG 0.608667 6_4:-65621685 Msa0993190:CDS
TTACCCAATCGTGTCCATTG+AGG 0.608978 6_4:-65620263 Msa0993190:CDS
TGTATAGGTTGTAATTGGGA+TGG 0.611136 6_4:-65620495 Msa0993190:intron
GATGGAGGCTCAGACTACCT+CGG 0.611711 6_4:-65622185 Msa0993190:CDS
GCTCTGGAATTGAGGGATGG+AGG 0.616386 6_4:-65622200 Msa0993190:CDS
GGACAAGACGCTACTAATGT+GGG 0.621377 6_4:-65620959 Msa0993190:CDS
AGTATAACCAGCTTTAGCAA+TGG 0.621611 6_4:+65620596 None:intergenic
GCAAGCCTTTCAGATCTGCA+GGG 0.621624 6_4:+65619451 None:intergenic
GTGTCATGGCTAGCCACCGA+AGG 0.625831 6_4:-65619795 Msa0993190:intron
ATAACATTGAATGAAGGCAC+AGG 0.630100 6_4:+65621322 None:intergenic
TTGATGCTGACAGCACGGGC+GGG 0.630782 6_4:-65618952 Msa0993190:three_prime_UTR
GAAGCTCTGGAATTGAGGGA+TGG 0.631208 6_4:-65622203 Msa0993190:CDS
TCATTCAATGTTATCAACGG+AGG 0.633007 6_4:-65621313 Msa0993190:CDS
ACTAATGTGGGTGATGAAGG+TGG 0.648491 6_4:-65620947 Msa0993190:CDS
GAACTGTTAATGAGTGGGGA+TGG 0.649614 6_4:-65621680 Msa0993190:CDS
TGAAAGAAGATGCCCCAACA+GGG 0.650662 6_4:+65621153 None:intergenic
TTCCAAATTCCGAGCCTCGG+TGG 0.653488 6_4:-65619020 Msa0993190:three_prime_UTR
AGAAGTATACCATCATCTGA+AGG 0.657415 6_4:-65621108 Msa0993190:intron
TTCCAAATTCAGGGCCCCAG+TGG 0.658988 6_4:-65619085 Msa0993190:CDS
AAACACGAAACTCACTTCGA+CGG 0.663189 6_4:+65623554 None:intergenic
TTAACAGGGTCAGATCAAGA+CGG 0.666581 6_4:-65619479 Msa0993190:intron
TGGACGTTCAATACCTTCGG+TGG 0.670364 6_4:+65619782 None:intergenic
AAGGCTTGCTAAGTACAACC+AGG 0.680165 6_4:-65619437 Msa0993190:intron
TTTACAGACAGCGAGTGACA+CGG 0.682554 6_4:+65621507 None:intergenic
TTATTGTAGTGGTGAAACTG+AGG 0.684757 6_4:-65619679 Msa0993190:intron
TCTCCTTGTTACCAACCCAA+AGG 0.687886 6_4:-65620158 Msa0993190:intron
TTGATGGAACTGTTAATGAG+TGG 0.693093 6_4:-65621686 Msa0993190:CDS
CCTTAAGAACACCTTTCCCG+AGG 0.693320 6_4:+65622168 None:intergenic
ATATTAGCACAAATGCTGCG+TGG 0.716082 6_4:-65618719 Msa0993190:three_prime_UTR
GATGGAACTGTTAATGAGTG+GGG 0.727197 6_4:-65621684 Msa0993190:CDS
ATATCAACAGAGCTCCACCG+AGG 0.791110 6_4:+65619006 None:intergenic
ATATCAATAGGGCTCCACTG+GGG 0.821378 6_4:+65619071 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTGTCTAATTTT+AGG - chr6_4:65619060-65619079 Msa0993190:exon 10.0%
!! ACAAAAATATATAGTAAAAA+GGG + chr6_4:65620321-65620340 None:intergenic 10.0%
!! AACAAAAATATATAGTAAAA+AGG + chr6_4:65620322-65620341 None:intergenic 10.0%
!! AACATTATTATGTTTATTAT+TGG - chr6_4:65622259-65622278 Msa0993190:intron 10.0%
!!! ATTTTACATTATTCTTTTAT+TGG + chr6_4:65623105-65623124 None:intergenic 10.0%
!!! TTGTTGATTTTATGAATATT+TGG - chr6_4:65619637-65619656 Msa0993190:intron 15.0%
!!! TATAAGTAAGTTATTGATTA+TGG - chr6_4:65619815-65619834 Msa0993190:CDS 15.0%
!!! TTTTTTATTTGTTTTTGACA+TGG - chr6_4:65620519-65620538 Msa0993190:intron 15.0%
!!! TGTTATTATATGTATTGATT+AGG - chr6_4:65621090-65621109 Msa0993190:intron 15.0%
!!! GTTATTATATGTATTGATTA+GGG - chr6_4:65621091-65621110 Msa0993190:intron 15.0%
!!! TTTTAGAATAAAAGCAAAAA+TGG - chr6_4:65621271-65621290 Msa0993190:intron 15.0%
!! AAATAAAACAACTTAATAGA+TGG + chr6_4:65621323-65621342 None:intergenic 15.0%
!!! ATTTATTTTGTTTGCATATT+AGG - chr6_4:65621512-65621531 Msa0993190:CDS 15.0%
!!! AATTATTTTGTATGCAAATT+TGG + chr6_4:65621558-65621577 None:intergenic 15.0%
!! TGCTAGTAAATAAAAAATTA+CGG + chr6_4:65622360-65622379 None:intergenic 15.0%
!!! AATTTTCTTTATAACCTATT+TGG - chr6_4:65622444-65622463 Msa0993190:intron 15.0%
!! TTACAAAATACAAATTTCAA+AGG + chr6_4:65622989-65623008 None:intergenic 15.0%
!!! TTCTTTTTCGTTTTTTTGTT+TGG - chr6_4:65618804-65618823 Msa0993190:three_prime_UTR 20.0%
!! TTAAATATAATAACATGTGC+TGG + chr6_4:65618946-65618965 None:intergenic 20.0%
!!! TACTTTTCATTGATTATTAC+AGG - chr6_4:65619026-65619045 Msa0993190:three_prime_UTR 20.0%
!!! TTTTGTTTTGTGAAATAGAA+AGG - chr6_4:65619314-65619333 Msa0993190:intron 20.0%
!!! AACCGTTTTATTTTTGTTAA+AGG - chr6_4:65620099-65620118 Msa0993190:intron 20.0%
!! CACCTTTAACAAAAATAAAA+CGG + chr6_4:65620104-65620123 None:intergenic 20.0%
!!! TAGAAGTTCTTTTCTAATTT+TGG - chr6_4:65620223-65620242 Msa0993190:CDS 20.0%
!!! AGAAGTTCTTTTCTAATTTT+GGG - chr6_4:65620224-65620243 Msa0993190:CDS 20.0%
!! TATATAGTAAAAAGGGATTA+GGG + chr6_4:65620314-65620333 None:intergenic 20.0%
!! ATATATAGTAAAAAGGGATT+AGG + chr6_4:65620315-65620334 None:intergenic 20.0%
!!! ATAAGATTCCAAATTTGTTT+TGG - chr6_4:65620416-65620435 Msa0993190:intron 20.0%
!! TATTGTGGAACTATAATATT+GGG - chr6_4:65620493-65620512 Msa0993190:intron 20.0%
!! AGCTGAAAATTATAATATTG+TGG + chr6_4:65620785-65620804 None:intergenic 20.0%
!!! CAATATTATAATTTTCAGCT+TGG - chr6_4:65620785-65620804 Msa0993190:intron 20.0%
!! ATCATAAATTCCTATATAAG+AGG + chr6_4:65621156-65621175 None:intergenic 20.0%
!! AAATGTTCTGTTTAATGTAT+AGG - chr6_4:65621680-65621699 Msa0993190:CDS 20.0%
!!! AACATATGACTTGAATTTTA+AGG - chr6_4:65621897-65621916 Msa0993190:intron 20.0%
!! TAAATTTACCTTCAACAAAA+GGG + chr6_4:65622330-65622349 None:intergenic 20.0%
!! AGATTTGATAGAGAATTAAA+AGG + chr6_4:65622418-65622437 None:intergenic 20.0%
!! ACAAGATCATTTAAATCAAA+TGG + chr6_4:65623020-65623039 None:intergenic 20.0%
!!! TCATTGATTATTACAGGTTT+TGG - chr6_4:65619032-65619051 Msa0993190:three_prime_UTR 25.0%
!!! ATTTTGGTTTGGTTATTGTT+AGG - chr6_4:65619112-65619131 Msa0993190:CDS 25.0%
! GTAAATGATTGGTGAAAATT+TGG - chr6_4:65619198-65619217 Msa0993190:intron 25.0%
!!! ATTTGAGGAATGTTTTGATT+TGG - chr6_4:65619268-65619287 Msa0993190:intron 25.0%
!!! TTGATTTGGTACATTTTTGT+AGG - chr6_4:65619282-65619301 Msa0993190:intron 25.0%
!!! TGATTTGGTACATTTTTGTA+GGG - chr6_4:65619283-65619302 Msa0993190:intron 25.0%
! TGTTTCAAAAGGTAAATGAT+TGG - chr6_4:65619559-65619578 Msa0993190:intron 25.0%
! TTAACTAACATGTATATGAC+TGG - chr6_4:65619665-65619684 Msa0993190:CDS 25.0%
!!! ACATGTGTAATGCATTTTTT+AGG - chr6_4:65619757-65619776 Msa0993190:intron 25.0%
!! AGTAAGTTATTGATTATGGA+TGG - chr6_4:65619819-65619838 Msa0993190:CDS 25.0%
!! CAGATACTGAGATTTTTAAT+AGG + chr6_4:65620265-65620284 None:intergenic 25.0%
! CTAAAACAAACATAAGTTAC+TGG + chr6_4:65620347-65620366 None:intergenic 25.0%
!!! CAGTAACTTATGTTTGTTTT+AGG - chr6_4:65620345-65620364 Msa0993190:intron 25.0%
!! TTATGTTTTCCTGAATGAAT+TGG - chr6_4:65620385-65620404 Msa0993190:intron 25.0%
! GTATTGTGGAACTATAATAT+TGG - chr6_4:65620492-65620511 Msa0993190:intron 25.0%
!! TTAATCCAGTTTTTATAGAG+TGG - chr6_4:65620553-65620572 Msa0993190:intron 25.0%
!! GACTGAAATTGACAATTTTA+TGG - chr6_4:65620614-65620633 Msa0993190:CDS 25.0%
! AAAGAAAATTCCTCTATACA+AGG - chr6_4:65620862-65620881 Msa0993190:intron 25.0%
!!! GCTTTTATTCTAAAACAAGT+TGG + chr6_4:65621266-65621285 None:intergenic 25.0%
!!! TCAAATCATGAACTACTTTT+AGG + chr6_4:65621471-65621490 None:intergenic 25.0%
! AATGTATAGGAAAACAAAGA+AGG - chr6_4:65621693-65621712 Msa0993190:CDS 25.0%
!!! TGATTAGTTTCTATCTGTAT+AGG - chr6_4:65621822-65621841 Msa0993190:intron 25.0%
! TATCTGTATAGGTTGTAATT+GGG - chr6_4:65621833-65621852 Msa0993190:intron 25.0%
!! TTCAGAATTTTACGATAACA+AGG - chr6_4:65621870-65621889 Msa0993190:CDS 25.0%
!! TCAGAATTTTACGATAACAA+GGG - chr6_4:65621871-65621890 Msa0993190:CDS 25.0%
! AATAAAAATGGAGAAACTTC+AGG + chr6_4:65621948-65621967 None:intergenic 25.0%
! TCACGGAAAAGAAATAAAAA+TGG + chr6_4:65621960-65621979 None:intergenic 25.0%
! ACCTTATTACAGAATAATGA+TGG - chr6_4:65621989-65622008 Msa0993190:intron 25.0%
! TCCATCATTATTCTGTAATA+AGG + chr6_4:65621993-65622012 None:intergenic 25.0%
!! AAAGTTAGTAAAGTACCTTT+GGG + chr6_4:65622192-65622211 None:intergenic 25.0%
! AATAATGTTAAAAACGCAAC+AGG + chr6_4:65622248-65622267 None:intergenic 25.0%
! GTAAATTTACCTTCAACAAA+AGG + chr6_4:65622331-65622350 None:intergenic 25.0%
! TAGTTCATTAAGAGTTAAGA+CGG + chr6_4:65622394-65622413 None:intergenic 25.0%
! TTCTTTATAACCTATTTGGT+AGG - chr6_4:65622448-65622467 Msa0993190:intron 25.0%
! CATTAGAAAACAGAACAAAA+CGG + chr6_4:65622594-65622613 None:intergenic 25.0%
!! TTACATCTTGTTTATTGTAG+TGG - chr6_4:65622642-65622661 Msa0993190:intron 25.0%
! AAATCTTGACATGAATTGTT+TGG + chr6_4:65622767-65622786 None:intergenic 25.0%
! TCATTTAAATCAAATGGACA+TGG + chr6_4:65623014-65623033 None:intergenic 25.0%
! AGTTTGCGTTAATATCAATA+GGG + chr6_4:65623275-65623294 None:intergenic 25.0%
!! ATGTCTGTAAGTTTAAAGTT+TGG - chr6_4:65623708-65623727 Msa0993190:five_prime_UTR 25.0%
! ACTTATTCGATTAGAAGTGT+CGG + chr6_4:65618913-65618932 None:intergenic 30.0%
ACTTCTAATCGAATAAGTGT+CGG - chr6_4:65618915-65618934 Msa0993190:three_prime_UTR 30.0%
! GAAGTTGTAGTTTCTGATTT+TGG - chr6_4:65619096-65619115 Msa0993190:CDS 30.0%
!!! TGTAGTTTCTGATTTTGGTT+TGG - chr6_4:65619101-65619120 Msa0993190:CDS 30.0%
!! TATGTTTTTGCATAGACATG+TGG - chr6_4:65619422-65619441 Msa0993190:intron 30.0%
ATATGACTGGTGTACTATAT+AGG - chr6_4:65619678-65619697 Msa0993190:intron 30.0%
!! TCTAATTTTGGGAAGAATGA+TGG - chr6_4:65620235-65620254 Msa0993190:CDS 30.0%
!!! TTCCAAATTTGTTTTGGCTT+AGG - chr6_4:65620422-65620441 Msa0993190:intron 30.0%
CCTTCATTCAATGTTATCAA+CGG - chr6_4:65621016-65621035 Msa0993190:intron 30.0%
AATTTATGATTCTCCCTGTT+GGG - chr6_4:65621166-65621185 Msa0993190:CDS 30.0%
TTTCAAAGAAGCAATGAAGA+TGG - chr6_4:65621197-65621216 Msa0993190:intron 30.0%
TTCAAAGAAGCAATGAAGAT+GGG - chr6_4:65621198-65621217 Msa0993190:intron 30.0%
! CTAAAACAAGTTGGACAAAA+AGG + chr6_4:65621257-65621276 None:intergenic 30.0%
TAAAAGCAAAAATGGATGAC+AGG - chr6_4:65621279-65621298 Msa0993190:intron 30.0%
!!! AGTTGTTTTATTTGCCTTAC+AGG - chr6_4:65621330-65621349 Msa0993190:CDS 30.0%
GCTGTGATTAAAAAGAAGTA+TGG - chr6_4:65621352-65621371 Msa0993190:CDS 30.0%
AAAACCAAAAGAAGCAAGTA+AGG + chr6_4:65621432-65621451 None:intergenic 30.0%
! ATTTGATTTCTCGCAATTAG+TGG - chr6_4:65621485-65621504 Msa0993190:CDS 30.0%
GAAAATGTAATGAAGCAGAA+AGG + chr6_4:65621629-65621648 None:intergenic 30.0%
TCAGTCATACATGTATATTC+AGG + chr6_4:65621805-65621824 None:intergenic 30.0%
CTATCTGTATAGGTTGTAAT+TGG - chr6_4:65621832-65621851 Msa0993190:intron 30.0%
!! TGACTTGAATTTTAAGGAAG+AGG - chr6_4:65621903-65621922 Msa0993190:intron 30.0%
AATAAGGTAGTCAGTTATCA+CGG + chr6_4:65621977-65621996 None:intergenic 30.0%
! GAAAGTTAGTAAAGTACCTT+TGG + chr6_4:65622193-65622212 None:intergenic 30.0%
CTTTACTAACTTTCAGACTT+AGG - chr6_4:65622199-65622218 Msa0993190:CDS 30.0%
ATTTGATTCACCTACCAAAT+AGG + chr6_4:65622461-65622480 None:intergenic 30.0%
ATTTGGTAGGTGAATCAAAT+TGG - chr6_4:65622461-65622480 Msa0993190:intron 30.0%
ATGCTATGTCATTGTTTAAC+AGG - chr6_4:65622838-65622857 Msa0993190:intron 30.0%
TGCTATGTCATTGTTTAACA+GGG - chr6_4:65622839-65622858 Msa0993190:intron 30.0%
! AACAAAGATAAGGAGTTTTG+TGG + chr6_4:65622926-65622945 None:intergenic 30.0%
CAGCTCAATTAACAAAGATA+AGG + chr6_4:65622936-65622955 None:intergenic 30.0%
TTTGTTAATTGAGCTGTATG+CGG - chr6_4:65622940-65622959 Msa0993190:intron 30.0%
TCATAATATTGCATATGCCT+TGG - chr6_4:65623077-65623096 Msa0993190:intron 30.0%
CATAATATTGCATATGCCTT+GGG - chr6_4:65623078-65623097 Msa0993190:intron 30.0%
ATAATATTGCATATGCCTTG+GGG - chr6_4:65623079-65623098 Msa0993190:intron 30.0%
CAGTTTGCGTTAATATCAAT+AGG + chr6_4:65623276-65623295 None:intergenic 30.0%
AACTGTCTGTATAAGAGAAT+AGG - chr6_4:65623431-65623450 Msa0993190:intron 30.0%
! TTTTGTCGAGTGTGTAATTT+TGG - chr6_4:65623488-65623507 Msa0993190:intron 30.0%
TTGAATTTGATGTGTCTGTT+TGG - chr6_4:65623534-65623553 Msa0993190:intron 30.0%
TGAATTTGATGTGTCTGTTT+GGG - chr6_4:65623535-65623554 Msa0993190:intron 30.0%
!! CATATGTGTGTTGTTTATGA+AGG + chr6_4:65623691-65623710 None:intergenic 30.0%
! GTAAGTTTAAAGTTTGGCAT+TGG - chr6_4:65623714-65623733 Msa0993190:five_prime_UTR 30.0%
!! GTGTTTCTGTGATTTTCTGA+GGG + chr6_4:65618648-65618667 None:intergenic 35.0%
!! AGTGTTTCTGTGATTTTCTG+AGG + chr6_4:65618649-65618668 None:intergenic 35.0%
GAATTTGATTCTTGCAACGA+TGG - chr6_4:65618698-65618717 Msa0993190:three_prime_UTR 35.0%
TTGGAAACTGAGAAAATGAG+CGG - chr6_4:65618823-65618842 Msa0993190:three_prime_UTR 35.0%
GTTGATGTTACTCTTAGTGA+TGG - chr6_4:65619134-65619153 Msa0993190:CDS 35.0%
TGCTTCAACAGGTAAATGAT+TGG - chr6_4:65619187-65619206 Msa0993190:intron 35.0%
TCAACTGTTTGTGTGATTTG+AGG - chr6_4:65619253-65619272 Msa0993190:intron 35.0%
!!! GAAGTTGATGTGATGTTTTG+TGG - chr6_4:65619343-65619362 Msa0993190:intron 35.0%
TTCTGTCTTGCTTCATATGT+AGG - chr6_4:65619530-65619549 Msa0993190:intron 35.0%
! GTAGGCTTTTGTGTTTCAAA+AGG - chr6_4:65619548-65619567 Msa0993190:intron 35.0%
ATGTCAAATTGATTGCACGT+TGG - chr6_4:65619934-65619953 Msa0993190:intron 35.0%
! CTGAGCTTCATAGCTTTTAT+TGG - chr6_4:65620045-65620064 Msa0993190:CDS 35.0%
TTATCAGCTCCAATTCATTC+AGG + chr6_4:65620397-65620416 None:intergenic 35.0%
AGCCTAAGCCAAAACAAATT+TGG + chr6_4:65620427-65620446 None:intergenic 35.0%
!! GAGTTTGTATCTGCTTTTAC+AGG - chr6_4:65620578-65620597 Msa0993190:intron 35.0%
ATTGTCAATTTCAGTCTGCT+TGG + chr6_4:65620610-65620629 None:intergenic 35.0%
TTGATGGAACTGTTAATGAG+TGG - chr6_4:65620646-65620665 Msa0993190:intron 35.0%
TGATGGAACTGTTAATGAGT+GGG - chr6_4:65620647-65620666 Msa0993190:intron 35.0%
!!! ATTTTTTGCAGCTGCGTTTA+TGG - chr6_4:65620713-65620732 Msa0993190:intron 35.0%
GGAGACTGTAATAGACTAAT+AGG - chr6_4:65620734-65620753 Msa0993190:intron 35.0%
! ATAACATTGAATGAAGGCAC+AGG + chr6_4:65621013-65621032 None:intergenic 35.0%
!! CCGTTGATAACATTGAATGA+AGG + chr6_4:65621019-65621038 None:intergenic 35.0%
TCATTCAATGTTATCAACGG+AGG - chr6_4:65621019-65621038 Msa0993190:intron 35.0%
TATCCTTCTGCCTCTTATAT+AGG - chr6_4:65621143-65621162 Msa0993190:CDS 35.0%
ATTCCTATATAAGAGGCAGA+AGG + chr6_4:65621149-65621168 None:intergenic 35.0%
GAATTTATGATTCTCCCTGT+TGG - chr6_4:65621165-65621184 Msa0993190:CDS 35.0%
ATTTATGATTCTCCCTGTTG+GGG - chr6_4:65621167-65621186 Msa0993190:CDS 35.0%
! AGAAGTATACCATCATCTGA+AGG - chr6_4:65621224-65621243 Msa0993190:intron 35.0%
! CTTTTTAATCACAGCCTGTA+AGG + chr6_4:65621347-65621366 None:intergenic 35.0%
!! AACTACTTTTAGGTAGCACT+TGG + chr6_4:65621461-65621480 None:intergenic 35.0%
! AGTATAACCAGCTTTAGCAA+TGG + chr6_4:65621739-65621758 None:intergenic 35.0%
ATTGCTAAAGCTGGTTATAC+TGG - chr6_4:65621738-65621757 Msa0993190:intron 35.0%
TAAAGCTGGTTATACTGGAA+AGG - chr6_4:65621743-65621762 Msa0993190:intron 35.0%
TGTATAGGTTGTAATTGGGA+TGG - chr6_4:65621837-65621856 Msa0993190:intron 35.0%
TGCAAAACTAACAGCTGAAA+TGG - chr6_4:65622123-65622142 Msa0993190:intron 35.0%
GCAAAACTAACAGCTGAAAT+GGG - chr6_4:65622124-65622143 Msa0993190:intron 35.0%
! TTAGTAAAGTACCTTTGGGT+TGG + chr6_4:65622188-65622207 None:intergenic 35.0%
GGAACTGATTGGAAAAACAA+TGG + chr6_4:65622573-65622592 None:intergenic 35.0%
TTATTGTAGTGGTGAAACTG+AGG - chr6_4:65622653-65622672 Msa0993190:intron 35.0%
! CATGTCAAGATTTTGTAGCT+TGG - chr6_4:65622774-65622793 Msa0993190:intron 35.0%
CTGTTGAAGCTTACAAGATT+TGG - chr6_4:65622813-65622832 Msa0993190:intron 35.0%
! TTATTCTTTTATTGGCCCCA+AGG + chr6_4:65623097-65623116 None:intergenic 35.0%
! GCTCTATGTGGATTTAAGTT+AGG - chr6_4:65623143-65623162 Msa0993190:intron 35.0%
!!! AGTGTGTAATTTTGGAACGA+TGG - chr6_4:65623496-65623515 Msa0993190:intron 35.0%
GAATTTGATGTGTCTGTTTG+GGG - chr6_4:65623536-65623555 Msa0993190:intron 35.0%
!! TTGAACTTGCTGTGTTTGTT+TGG - chr6_4:65623564-65623583 Msa0993190:intron 35.0%
!! TGAACTTGCTGTGTTTGTTT+GGG - chr6_4:65623565-65623584 Msa0993190:intron 35.0%
!! AAGTTTGGCATTGGTATGAT+AGG - chr6_4:65623723-65623742 Msa0993190:five_prime_UTR 35.0%
!! AGTTTGGCATTGGTATGATA+GGG - chr6_4:65623724-65623743 Msa0993190:five_prime_UTR 35.0%
TTCTCGAGAAAGTGACAATG+AGG + chr6_4:65618620-65618639 None:intergenic 40.0%
TTTGATTCTTGCAACGATGG+TGG - chr6_4:65618701-65618720 Msa0993190:three_prime_UTR 40.0%
AAACACGAAACTCACTTCGA+CGG + chr6_4:65618781-65618800 None:intergenic 40.0%
TGGAAACTGAGAAAATGAGC+GGG - chr6_4:65618824-65618843 Msa0993190:three_prime_UTR 40.0%
CACATGTGTCAATGTTGCAT+TGG + chr6_4:65619744-65619763 None:intergenic 40.0%
! GCATGACTTGTGTACTATGT+AGG - chr6_4:65619905-65619924 Msa0993190:intron 40.0%
TCTGATGCAAAACTGACATG+TGG - chr6_4:65619964-65619983 Msa0993190:intron 40.0%
!! TAAAGGTGTCTATGAAGCTC+TGG - chr6_4:65620116-65620135 Msa0993190:intron 40.0%
!! TCTATGAAGCTCTGGAATTG+AGG - chr6_4:65620124-65620143 Msa0993190:intron 40.0%
!! CTATGAAGCTCTGGAATTGA+GGG - chr6_4:65620125-65620144 Msa0993190:intron 40.0%
ATTATAGCACCTGCTCTTCT+TGG - chr6_4:65620465-65620484 Msa0993190:CDS 40.0%
CTCAGCCACTCTATAAAAAC+TGG + chr6_4:65620561-65620580 None:intergenic 40.0%
CAATTTCAGTCTGCTTGGTT+GGG + chr6_4:65620605-65620624 None:intergenic 40.0%
TCAATTTCAGTCTGCTTGGT+TGG + chr6_4:65620606-65620625 None:intergenic 40.0%
TTTATGGTACAGCAGCTTGA+TGG - chr6_4:65620630-65620649 Msa0993190:CDS 40.0%
GATGGAACTGTTAATGAGTG+GGG - chr6_4:65620648-65620667 Msa0993190:intron 40.0%
! GGCATTCAATTTTCGCTGAT+TGG - chr6_4:65620755-65620774 Msa0993190:intron 40.0%
TCCTCTATACAAGGTATGTG+AGG - chr6_4:65620871-65620890 Msa0993190:intron 40.0%
ACCTCACATACCTTGTATAG+AGG + chr6_4:65620875-65620894 None:intergenic 40.0%
CAGCATATTGCAAATCTAGC+TGG - chr6_4:65620968-65620987 Msa0993190:CDS 40.0%
TCTAGCTGGAAACAAGACTT+TGG - chr6_4:65620982-65621001 Msa0993190:CDS 40.0%
AGGAAATAAGCTTGCAATGC+AGG - chr6_4:65621051-65621070 Msa0993190:intron 40.0%
GAGGCAGAAGGATAAGAATT+TGG + chr6_4:65621137-65621156 None:intergenic 40.0%
GGACATTAACCTTCAGATGA+TGG + chr6_4:65621236-65621255 None:intergenic 40.0%
CAAGTAAGGACCTGGATATT+AGG + chr6_4:65621418-65621437 None:intergenic 40.0%
AAAAGAAGCAAGTAAGGACC+TGG + chr6_4:65621426-65621445 None:intergenic 40.0%
! AGGTCCTTACTTGCTTCTTT+TGG - chr6_4:65621425-65621444 Msa0993190:intron 40.0%
GATGGATCAGAGAAAATCTC+AGG - chr6_4:65622007-65622026 Msa0993190:intron 40.0%
!! ATTATTGGTTCCTTAGCGTG+TGG - chr6_4:65622274-65622293 Msa0993190:intron 40.0%
!!! ATTGCTTTTTCCACACGCTA+AGG + chr6_4:65622287-65622306 None:intergenic 40.0%
GCGTGTGGAAAAAGCAATTA+AGG - chr6_4:65622289-65622308 Msa0993190:intron 40.0%
! TTGCAATGCCCTTTTGTTGA+AGG - chr6_4:65622319-65622338 Msa0993190:intron 40.0%
CAATGGACGTTCAATACCTT+CGG + chr6_4:65622556-65622575 None:intergenic 40.0%
CAGAACAAAACGGAACTGAT+TGG + chr6_4:65622584-65622603 None:intergenic 40.0%
TCTCTGTACGTAGACACTAA+TGG - chr6_4:65622618-65622637 Msa0993190:intron 40.0%
CTCTGTACGTAGACACTAAT+GGG - chr6_4:65622619-65622638 Msa0993190:intron 40.0%
AACTGAGAGATCAGCAATGA+AGG + chr6_4:65622682-65622701 None:intergenic 40.0%
TTCATTGCTGATCTCTCAGT+TGG - chr6_4:65622681-65622700 Msa0993190:intron 40.0%
TCATTGCTGATCTCTCAGTT+GGG - chr6_4:65622682-65622701 Msa0993190:intron 40.0%
CTTGTAAGCTTCAACAGAGA+AGG + chr6_4:65622810-65622829 None:intergenic 40.0%
TTAACAGGGTCAGATCAAGA+CGG - chr6_4:65622853-65622872 Msa0993190:intron 40.0%
!! AGGAGTTTTGTGGTTTTACC+TGG + chr6_4:65622916-65622935 None:intergenic 40.0%
! GAGATGTAGATAGCTCTATG+TGG - chr6_4:65623131-65623150 Msa0993190:intron 40.0%
!! TCTATGCTGGTTCCAAATTC+AGG - chr6_4:65623237-65623256 Msa0993190:intron 40.0%
!! CTATGCTGGTTCCAAATTCA+GGG - chr6_4:65623238-65623257 Msa0993190:intron 40.0%
AATATCAATAGGGCTCCACT+GGG + chr6_4:65623265-65623284 None:intergenic 40.0%
TAATATCAATAGGGCTCCAC+TGG + chr6_4:65623266-65623285 None:intergenic 40.0%
TTCTATTGATGCTGACAGCA+CGG - chr6_4:65623375-65623394 Msa0993190:intron 40.0%
!!! AATTTTGGAACGATGGCAGT+AGG - chr6_4:65623503-65623522 Msa0993190:intron 40.0%
!!! ATTTTGGAACGATGGCAGTA+GGG - chr6_4:65623504-65623523 Msa0993190:intron 40.0%
!! GAACTTGCTGTGTTTGTTTG+GGG - chr6_4:65623566-65623585 Msa0993190:intron 40.0%
ATATTAGCACAAATGCTGCG+TGG - chr6_4:65623613-65623632 Msa0993190:CDS 40.0%
! TTACCTGTTGAAGCACCACT+AGG + chr6_4:65619182-65619201 None:intergenic 45.0%
! ATGTTGCATTGGCCACATGT+CGG + chr6_4:65619733-65619752 None:intergenic 45.0%
AATACCTTGCCAAGAAGAGC+AGG + chr6_4:65620477-65620496 None:intergenic 45.0%
!! CTCTTCTTGGCAAGGTATTG+TGG - chr6_4:65620478-65620497 Msa0993190:CDS 45.0%
GAACTGTTAATGAGTGGGGA+TGG - chr6_4:65620652-65620671 Msa0993190:intron 45.0%
!! GCTTGGAGCCAATGCTATTT+TGG - chr6_4:65620802-65620821 Msa0993190:intron 45.0%
TGACACGGCCAAAATAGCAT+TGG + chr6_4:65620813-65620832 None:intergenic 45.0%
TTTACAGACAGCGAGTGACA+CGG + chr6_4:65620828-65620847 None:intergenic 45.0%
!! CTCGTTAGCTTGTGTTCTCA+TGG - chr6_4:65620916-65620935 Msa0993190:intron 45.0%
! TGTGTTCTCATGGATTGCTG+TGG - chr6_4:65620926-65620945 Msa0993190:intron 45.0%
TGAAAGAAGATGCCCCAACA+GGG + chr6_4:65621182-65621201 None:intergenic 45.0%
TTGAAAGAAGATGCCCCAAC+AGG + chr6_4:65621183-65621202 None:intergenic 45.0%
TGGACAAGACGCTACTAATG+TGG - chr6_4:65621372-65621391 Msa0993190:intron 45.0%
GGACAAGACGCTACTAATGT+GGG - chr6_4:65621373-65621392 Msa0993190:intron 45.0%
GCTACTAATGTGGGTGATGA+AGG - chr6_4:65621382-65621401 Msa0993190:intron 45.0%
ACTAATGTGGGTGATGAAGG+TGG - chr6_4:65621385-65621404 Msa0993190:intron 45.0%
! TGGCTTTGCTCCTAATATCC+AGG - chr6_4:65621405-65621424 Msa0993190:intron 45.0%
AGCAGAAAGGAGAGTAGAGA+TGG + chr6_4:65621616-65621635 None:intergenic 45.0%
AAGACTGCCATTGCTAAAGC+TGG - chr6_4:65621729-65621748 Msa0993190:CDS 45.0%
TTACCCAATCGTGTCCATTG+AGG - chr6_4:65622069-65622088 Msa0993190:intron 45.0%
GATCCTCAATGGACACGATT+GGG + chr6_4:65622075-65622094 None:intergenic 45.0%
CTGATCGAATGGATCCTCAA+TGG + chr6_4:65622086-65622105 None:intergenic 45.0%
CATTGAGGATCCATTCGATC+AGG - chr6_4:65622084-65622103 Msa0993190:intron 45.0%
ATCCATTCGATCAGGATGAC+TGG - chr6_4:65622092-65622111 Msa0993190:intron 45.0%
TCCATTCGATCAGGATGACT+GGG - chr6_4:65622093-65622112 Msa0993190:intron 45.0%
GGTCAGCAAGTACAGATAGT+TGG - chr6_4:65622145-65622164 Msa0993190:intron 45.0%
TCTCCTTGTTACCAACCCAA+AGG - chr6_4:65622174-65622193 Msa0993190:CDS 45.0%
!! GTACCTTTGGGTTGGTAACA+AGG + chr6_4:65622180-65622199 None:intergenic 45.0%
GTGAGAATGTCTAAGCAAGC+TGG - chr6_4:65622509-65622528 Msa0993190:intron 45.0%
AATGTCTAAGCAAGCTGGCT+GGG - chr6_4:65622514-65622533 Msa0993190:intron 45.0%
TAACAGGGTCAGATCAAGAC+GGG - chr6_4:65622854-65622873 Msa0993190:intron 45.0%
!! AAGGCTTGCTAAGTACAACC+AGG - chr6_4:65622895-65622914 Msa0993190:intron 45.0%
AGCTGCAACACAGATCAAAG+AGG + chr6_4:65623182-65623201 None:intergenic 45.0%
GATCTGTGTTGCAGCTTCTT+AGG - chr6_4:65623186-65623205 Msa0993190:CDS 45.0%
GTTGCAGCTTCTTAGGATTG+AGG - chr6_4:65623193-65623212 Msa0993190:CDS 45.0%
ATATCAATAGGGCTCCACTG+GGG + chr6_4:65623264-65623283 None:intergenic 45.0%
TCTATTGATGCTGACAGCAC+GGG - chr6_4:65623376-65623395 Msa0993190:intron 45.0%
TTTGATGTGTCTGTTTGGGG+TGG - chr6_4:65623539-65623558 Msa0993190:intron 45.0%
!!! ATTATATTTAATATTTTCAT+CGG - chr6_4:65618955-65618974 Msa0993190:three_prime_UTR 5.0%
CTTCGACGGTTGGATTTCCA+CGG + chr6_4:65618767-65618786 None:intergenic 50.0%
ACGAAACTCACTTCGACGGT+TGG + chr6_4:65618777-65618796 None:intergenic 50.0%
TCTGTATCCGGTGTCTGTGT+CGG - chr6_4:65618988-65619007 Msa0993190:three_prime_UTR 50.0%
GTTCCTAGTGGTGCTTCAAC+AGG - chr6_4:65619176-65619195 Msa0993190:intron 50.0%
TTGAATGTGCGTCCGACATG+TGG - chr6_4:65619718-65619737 Msa0993190:intron 50.0%
!! GAAGCTCTGGAATTGAGGGA+TGG - chr6_4:65620129-65620148 Msa0993190:intron 50.0%
CCTTAAGAACACCTTTCCCG+AGG + chr6_4:65620167-65620186 None:intergenic 50.0%
!! CCTCGGGAAAGGTGTTCTTA+AGG - chr6_4:65620164-65620183 Msa0993190:CDS 50.0%
TCACTCGCTGTCTGTAAAGC+TGG - chr6_4:65620830-65620849 Msa0993190:intron 50.0%
GGATCCTCAATGGACACGAT+TGG + chr6_4:65622076-65622095 None:intergenic 50.0%
TCCCAGTCATCCTGATCGAA+TGG + chr6_4:65622097-65622116 None:intergenic 50.0%
CGCAACAGGATACATGTCTG+TGG + chr6_4:65622234-65622253 None:intergenic 50.0%
GAATGTCTAAGCAAGCTGGC+TGG - chr6_4:65622513-65622532 Msa0993190:intron 50.0%
ATGTCTAAGCAAGCTGGCTG+GGG - chr6_4:65622515-65622534 Msa0993190:intron 50.0%
TGGACGTTCAATACCTTCGG+TGG + chr6_4:65622553-65622572 None:intergenic 50.0%
GCAAGCCTTTCAGATCTGCA+GGG + chr6_4:65622884-65622903 None:intergenic 50.0%
AGCAAGCCTTTCAGATCTGC+AGG + chr6_4:65622885-65622904 None:intergenic 50.0%
GCAGCTTCTTAGGATTGAGG+AGG - chr6_4:65623196-65623215 Msa0993190:CDS 50.0%
CTTAGGATTGAGGAGGAGCT+TGG - chr6_4:65623203-65623222 Msa0993190:intron 50.0%
TGGTTCCAAATTCCGAGCCT+CGG - chr6_4:65623309-65623328 Msa0993190:intron 50.0%
ATATCAACAGAGCTCCACCG+AGG + chr6_4:65623329-65623348 None:intergenic 50.0%
! CTTGCTGTGTTTGTTTGGGG+TGG - chr6_4:65623569-65623588 Msa0993190:CDS 50.0%
! TGTGTTTGTTTGGGGTGGCT+TGG - chr6_4:65623574-65623593 Msa0993190:CDS 50.0%
CGTCAGATCTTCGATAGCCG+TGG - chr6_4:65618747-65618766 Msa0993190:three_prime_UTR 55.0%
!! GGCGTCGATGTGTCTGTATC+CGG - chr6_4:65618976-65618995 Msa0993190:three_prime_UTR 55.0%
!! TGAAGCACCGACACAGACAC+CGG + chr6_4:65618998-65619017 None:intergenic 55.0%
GCTAGAGCTGCTGTTCCTAG+TGG - chr6_4:65619164-65619183 Msa0993190:intron 55.0%
!! GCTCTGGAATTGAGGGATGG+AGG - chr6_4:65620132-65620151 Msa0993190:intron 55.0%
GATGGAGGCTCAGACTACCT+CGG - chr6_4:65620147-65620166 Msa0993190:intron 55.0%
ATGGAGGCTCAGACTACCTC+GGG - chr6_4:65620148-65620167 Msa0993190:intron 55.0%
AGCACCTGCTCTTCTTGGCA+AGG - chr6_4:65620470-65620489 Msa0993190:CDS 55.0%
ATCAACGGAGGCTCACATGC+AGG - chr6_4:65621031-65621050 Msa0993190:intron 55.0%
GAGCTCCCTGCAGATCTGAA+AGG - chr6_4:65622876-65622895 Msa0993190:intron 55.0%
TTCCAAATTCAGGGCCCCAG+TGG - chr6_4:65623247-65623266 Msa0993190:intron 55.0%
CAAACTGCAGCAGTCTGTGC+TGG - chr6_4:65623289-65623308 Msa0993190:intron 55.0%
TTCCAAATTCCGAGCCTCGG+TGG - chr6_4:65623312-65623331 Msa0993190:intron 55.0%
ATTGATGCTGACAGCACGGG+CGG - chr6_4:65623379-65623398 Msa0993190:intron 55.0%
! TTGTTTGGGGTGGCTTGGCT+TGG - chr6_4:65623579-65623598 Msa0993190:CDS 55.0%
GGCTCAGACTACCTCGGGAA+AGG - chr6_4:65620153-65620172 Msa0993190:intron 60.0%
GTGGGGATGGTGCAAGCAGA+AGG - chr6_4:65620665-65620684 Msa0993190:intron 60.0%
! GTGTCATGGCTAGCCACCGA+AGG - chr6_4:65622537-65622556 Msa0993190:intron 60.0%
! GGTGCTGCAGCAGTCTATGC+TGG - chr6_4:65623224-65623243 Msa0993190:intron 60.0%
CTCCACTGGGGCCCTGAATT+TGG + chr6_4:65623252-65623271 None:intergenic 60.0%
CTCCACCGAGGCTCGGAATT+TGG + chr6_4:65623317-65623336 None:intergenic 60.0%
AACAGAGCTCCACCGAGGCT+CGG + chr6_4:65623324-65623343 None:intergenic 60.0%
TTGATGCTGACAGCACGGGC+GGG - chr6_4:65623380-65623399 Msa0993190:intron 60.0%
! GCAAGCTGGCTGGGGTGTCA+TGG - chr6_4:65622523-65622542 Msa0993190:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 65618587 65623767 65618587 ID=Msa0993190;Name=Msa0993190
chr6_4 mRNA 65618587 65623767 65618587 ID=Msa0993190-mRNA-1;Parent=Msa0993190;Name=Msa0993190-mRNA-1;_AED=0.15;_eAED=0.15;_QI=130|1|1|1|1|1|17|487|446
chr6_4 exon 65618587 65619154 65618587 ID=Msa0993190-mRNA-1:exon:12227;Parent=Msa0993190-mRNA-1
chr6_4 exon 65619438 65619494 65619438 ID=Msa0993190-mRNA-1:exon:12226;Parent=Msa0993190-mRNA-1
chr6_4 exon 65619641 65619692 65619641 ID=Msa0993190-mRNA-1:exon:12225;Parent=Msa0993190-mRNA-1
chr6_4 exon 65619796 65619884 65619796 ID=Msa0993190-mRNA-1:exon:12224;Parent=Msa0993190-mRNA-1
chr6_4 exon 65620014 65620064 65620014 ID=Msa0993190-mRNA-1:exon:12223;Parent=Msa0993190-mRNA-1
chr6_4 exon 65620159 65620353 65620159 ID=Msa0993190-mRNA-1:exon:12222;Parent=Msa0993190-mRNA-1
chr6_4 exon 65620430 65620510 65620430 ID=Msa0993190-mRNA-1:exon:12221;Parent=Msa0993190-mRNA-1
chr6_4 exon 65620590 65620652 65620590 ID=Msa0993190-mRNA-1:exon:12220;Parent=Msa0993190-mRNA-1
chr6_4 exon 65620928 65621002 65620928 ID=Msa0993190-mRNA-1:exon:12219;Parent=Msa0993190-mRNA-1
chr6_4 exon 65621109 65621189 65621109 ID=Msa0993190-mRNA-1:exon:12218;Parent=Msa0993190-mRNA-1
chr6_4 exon 65621282 65621383 65621282 ID=Msa0993190-mRNA-1:exon:12217;Parent=Msa0993190-mRNA-1
chr6_4 exon 65621471 65621551 65621471 ID=Msa0993190-mRNA-1:exon:12216;Parent=Msa0993190-mRNA-1
chr6_4 exon 65621668 65621754 65621668 ID=Msa0993190-mRNA-1:exon:12215;Parent=Msa0993190-mRNA-1
chr6_4 exon 65621863 65621910 65621863 ID=Msa0993190-mRNA-1:exon:12214;Parent=Msa0993190-mRNA-1
chr6_4 exon 65622169 65622233 65622169 ID=Msa0993190-mRNA-1:exon:12213;Parent=Msa0993190-mRNA-1
chr6_4 exon 65623157 65623220 65623157 ID=Msa0993190-mRNA-1:exon:12212;Parent=Msa0993190-mRNA-1
chr6_4 exon 65623569 65623767 65623569 ID=Msa0993190-mRNA-1:exon:12211;Parent=Msa0993190-mRNA-1
chr6_4 five_prime_UTR 65623638 65623767 65623638 ID=Msa0993190-mRNA-1:five_prime_utr;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65623569 65623637 65623569 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65623157 65623220 65623157 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65622169 65622233 65622169 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65621863 65621910 65621863 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65621668 65621754 65621668 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65621471 65621551 65621471 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65621282 65621383 65621282 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65621109 65621189 65621109 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65620928 65621002 65620928 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65620590 65620652 65620590 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65620430 65620510 65620430 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65620159 65620353 65620159 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65620014 65620064 65620014 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65619796 65619884 65619796 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65619641 65619692 65619641 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65619438 65619494 65619438 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 CDS 65619074 65619154 65619074 ID=Msa0993190-mRNA-1:cds;Parent=Msa0993190-mRNA-1
chr6_4 three_prime_UTR 65618587 65619073 65618587 ID=Msa0993190-mRNA-1:three_prime_utr;Parent=Msa0993190-mRNA-1
Gene Sequence

>Msa0993190

ATGGTGGTTACGATCAAGATTGTTAAAGCTCGTCAGATCTTCGATAGCCGTGGAAATCCAACCGTCGAAGTTGATGTTACTCTTAGTGATGGAACATTTGCTAGAGCTGCTGTTCCTAGTGGTGCTTCAACAGGTGTCTATGAAGCTCTGGAATTGAGGGATGGAGGCTCAGACTACCTCGGGAAAGGTGTTCTTAAGGCTGTCGAGAATGTGAATTCAATTATAGCACCTGCTCTTCTTGGCAAGGACCCAACCAAGCAGACTGAAATTGACAATTTTATGGTACAGCAGCTTGATGGAACTGTTAATGAGTGGGGATGGTGCAAGCAGAAGCTTGGAGCCAATGCTATTTTGGCCGTGTCACTCGCTGTCTGTAAAGCTGGTGCTTTAGCAAAGAAAATTCCTCTATACAAGCATATTGCAAATCTAGCTGGAAACAAGACTTTGGTATTGCCTGTGCCTTCATTCAATGTTATCAACGGAGGCTCACATGCAGGAAATAAGCTTGCAATGCAGGAATTTATGATTCTCCCTGTTGGGGCATCTTCTTTCAAAGAAGCAATGAAGATGGGTGTAGAAGTATACCATCATCTGAAGGCTGTGATTAAAAAGAAGTATGGACAAGACGCTACTAATGTGGGTGATGAAGGTGGCTTTGCTCCTAATATCCAGGAAAACAAAGAAGGACTTGAGCTTCTGAAGACTGCCATTGCTAAAGCTGGTTATACTGGAAAGGTTGTAATTGGGATGGATGTCGCTGCTTCAGAATTTTACGATAACAAGGGCAAAACATATGACTTGAATTTTAAGGAAGAGAATAATGATGGATCAGAGAAAATCTCAGGAGACAGTTTAAAGAATGTGTACAAGTCTTTTGTGTCAGATTACCCAATCGTGTCCATTGAGGATCCATTCGATCAGGATGACTGGGAGCACTATGCAAAACTAACAGCTGAAATGGGTCAGCAAGTACAGATAGTTGGTGATGATCTCCTTGTTACCAACCCAAAGCGTGTGGAAAAAGCAATTAAGGAGAAGTCTTGCAATGCCCTTTTGTTGAAGGTGAATCAAATTGGTAGTGTAACTGAAAGTATTGAAGCTGTGAGAATGTCTAAGCAAGCTGGCTGGGGTGTCATGGCTAGCCACCGAAGTGGTGAAACTGAGGATACCTTCATTGCTGATCTCTCAGTTGGGCTAGCAACAGGTCAGATCAAGACGGGAGCTCCCTGCAGATCTGAAAGGCTTGCTAAGTACAACCAGCTTCTTAGGATTGAGGAGGAGCTTGGTGCTGCAGCAGTCTATGCTGGTTCCAAATTCAGGGCCCCAGTGGAGCCCTATTGA

Protein sequence

>Msa0993190

MVVTIKIVKARQIFDSRGNPTVEVDVTLSDGTFARAAVPSGASTGVYEALELRDGGSDYLGKGVLKAVENVNSIIAPALLGKDPTKQTEIDNFMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGALAKKIPLYKHIANLAGNKTLVLPVPSFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIAKAGYTGKVVIGMDVAASEFYDNKGKTYDLNFKEENNDGSEKISGDSLKNVYKSFVSDYPIVSIEDPFDQDDWEHYAKLTAEMGQQVQIVGDDLLVTNPKRVEKAIKEKSCNALLLKVNQIGSVTESIEAVRMSKQAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIEEELGAAAVYAGSKFRAPVEPY*