Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112960 | XP_003624080.1 | 95.551 | 517 | 23 | 0 | 1 | 517 | 1 | 517 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112960 | sp|P46547|PIP_AERSO | 43.498 | 446 | 226 | 10 | 64 | 509 | 2 | 421 | 1.18e-120 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112960 | G7L6P1 | 95.551 | 517 | 23 | 0 | 1 | 517 | 1 | 517 | 0.0 | 999 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1028540 | Msa1112960 | 0.976389 | 9.869166e-142 | -8.615850e-47 |
| Msa1067590 | Msa1112960 | 0.887655 | 1.178880e-72 | -8.615850e-47 |
| Msa0310720 | Msa1112960 | 0.805415 | 1.349677e-49 | -8.615850e-47 |
| Msa0310730 | Msa1112960 | 0.810473 | 1.132689e-50 | -8.615850e-47 |
| Msa0881530 | Msa1112960 | 0.801324 | 9.499270e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112960 | MtrunA17_Chr7g0248701 | 95.551 | 517 | 23 | 0 | 1 | 517 | 1 | 517 | 0.0 | 999 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1112960 | AT3G61540.1 | 74.398 | 457 | 114 | 1 | 61 | 517 | 62 | 515 | 0.0 | 724 |
Find 138 sgRNAs with CRISPR-Local
Find 318 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTGGACCTTGGACAATTT+TGG | 0.126771 | 7_3:+59107783 | Msa1112960:CDS |
| GCATAGGTGGCCCTTCCTTC+TGG | 0.157533 | 7_3:+59108337 | Msa1112960:intron |
| ATGCCTGAATGTCATATAAT+TGG | 0.164206 | 7_3:-59109611 | None:intergenic |
| AATTATTAATTATTTATTAA+TGG | 0.174487 | 7_3:+59110221 | Msa1112960:three_prime_UTR |
| ACAGTTTCGTCTCATCTTAA+TGG | 0.216029 | 7_3:+59107512 | Msa1112960:CDS |
| ACTAATGAGTTCATGCATTC+TGG | 0.269501 | 7_3:+59109896 | Msa1112960:CDS |
| ATTTCAGTAAATATAATAAT+AGG | 0.289635 | 7_3:-59110125 | None:intergenic |
| CATAGGTGGCCCTTCCTTCT+GGG | 0.305590 | 7_3:+59108338 | Msa1112960:intron |
| GTCCCAATTATATGACATTC+AGG | 0.308263 | 7_3:+59109608 | Msa1112960:CDS |
| GTGGGATCCTACTTTAGTTC+CGG | 0.328918 | 7_3:+59108541 | Msa1112960:CDS |
| AAGTAGTGACTTATTCTCTT+AGG | 0.335186 | 7_3:-59108569 | None:intergenic |
| ATTGTCCAAGGTCCAGCATT+TGG | 0.342399 | 7_3:-59107778 | None:intergenic |
| AAGAGTGACGAGGATGAAAT+TGG | 0.342596 | 7_3:-59105940 | None:intergenic |
| CAAGAGTCTGCAGCCCTCTT+GGG | 0.345042 | 7_3:-59108372 | None:intergenic |
| CCAAGAGTCTGCAGCCCTCT+TGG | 0.358001 | 7_3:-59108373 | None:intergenic |
| GGTCTCTCTGGCTTAGGATC+TGG | 0.360506 | 7_3:+59108394 | Msa1112960:CDS |
| TGGGATCCTACTTTAGTTCC+GGG | 0.370052 | 7_3:+59108542 | Msa1112960:CDS |
| GATGGTCTGCCAGTAGAATA+AGG | 0.370734 | 7_3:+59109138 | Msa1112960:CDS |
| CAAAGTTCTTGATCATTTGT+TGG | 0.375660 | 7_3:+59109937 | Msa1112960:CDS |
| TCCTAGCGTTGCCTAGCCTT+TGG | 0.377305 | 7_3:+59110036 | Msa1112960:three_prime_UTR |
| CTGCAGACTCTTGGTCTCTC+TGG | 0.384271 | 7_3:+59108382 | Msa1112960:CDS |
| TTCGCTCGTGAAGTTGTTGC+AGG | 0.393688 | 7_3:+59106202 | Msa1112960:CDS |
| TACATCTTTGAATGGTTTCA+AGG | 0.395179 | 7_3:-59109556 | None:intergenic |
| GCAGTGCATCCATGTCCTAT+TGG | 0.395461 | 7_3:-59108091 | None:intergenic |
| CATTTGTTGGGAATGTTAAA+CGG | 0.404860 | 7_3:+59109950 | Msa1112960:CDS |
| AAAGTTCTTGATCATTTGTT+GGG | 0.410247 | 7_3:+59109938 | Msa1112960:CDS |
| ACATAAAACATTGGTGGGAC+TGG | 0.418718 | 7_3:-59110014 | None:intergenic |
| ACTTCTCTGCAGCGAGGAAC+AGG | 0.422644 | 7_3:+59107625 | Msa1112960:intron |
| AACTTCAGTCCTTATTCTAC+TGG | 0.423287 | 7_3:-59109147 | None:intergenic |
| GTTCGCCTTGTTCCAAATGC+TGG | 0.428426 | 7_3:+59107766 | Msa1112960:CDS |
| ACTCTTGGTCTCTCTGGCTT+AGG | 0.428598 | 7_3:+59108388 | Msa1112960:CDS |
| CAATCTCCGGTGACATGCTC+CGG | 0.430327 | 7_3:-59106085 | None:intergenic |
| ATTTAAAATCTTCATCCAAC+CGG | 0.433720 | 7_3:-59105814 | None:intergenic |
| CCAAGAGGGCTGCAGACTCT+TGG | 0.439564 | 7_3:+59108373 | Msa1112960:CDS |
| TAATAAACGGCAGCTGCAAC+AGG | 0.439828 | 7_3:-59109800 | None:intergenic |
| GACATGCTCCGGCGAGGAGG+TGG | 0.441501 | 7_3:-59106074 | None:intergenic |
| GAAACAGCTTCTCAAATAGC+TGG | 0.441550 | 7_3:+59109857 | Msa1112960:CDS |
| ATACATGTCTTCATAATAAA+CGG | 0.444263 | 7_3:-59109813 | None:intergenic |
| TTGGGACCAATCCTTCTTCT+CGG | 0.448445 | 7_3:-59109592 | None:intergenic |
| ATTCTGGCTTGCGTGATGAC+GGG | 0.451939 | 7_3:+59109912 | Msa1112960:CDS |
| TGCGTGAGCTTCGGTGAGAA+AGG | 0.454517 | 7_3:-59106012 | None:intergenic |
| TCATTGGAATGCGTGAGCTT+CGG | 0.455215 | 7_3:-59106021 | None:intergenic |
| TGCCTGAATGTCATATAATT+GGG | 0.462537 | 7_3:-59109610 | None:intergenic |
| ATGCTCCGGCGAGGAGGTGG+AGG | 0.463493 | 7_3:-59106071 | None:intergenic |
| CTCCGGCGAGGAGGTGGAGG+AGG | 0.463882 | 7_3:-59106068 | None:intergenic |
| ATATGAGCTACATCTTTGAA+TGG | 0.468347 | 7_3:-59109564 | None:intergenic |
| CGGAGCATGTCACCGGAGAT+TGG | 0.471151 | 7_3:+59106086 | Msa1112960:CDS |
| TCATATACTGTCCGAGAAGA+AGG | 0.473550 | 7_3:+59109581 | Msa1112960:CDS |
| GCAATTAAAGCTGCTAAAGA+AGG | 0.476169 | 7_3:+59109185 | Msa1112960:CDS |
| ATATTTACTGAAATAATGTC+AGG | 0.476978 | 7_3:+59110134 | Msa1112960:three_prime_UTR |
| TTTAAATTATGGCAGAGTTA+CGG | 0.478103 | 7_3:+59107992 | Msa1112960:intron |
| TCAATGTCACAATTCAAGTC+TGG | 0.485879 | 7_3:+59107673 | Msa1112960:CDS |
| CTTCTCAAATAGCTGGGATC+AGG | 0.486016 | 7_3:+59109864 | Msa1112960:CDS |
| AACAATGGTGATCAAAATAG+AGG | 0.490017 | 7_3:-59109980 | None:intergenic |
| CTCCTCCTCCACCTCCTCGC+CGG | 0.492725 | 7_3:+59106066 | Msa1112960:CDS |
| ACATGAATCCATCTATTGTC+AGG | 0.493822 | 7_3:+59108732 | Msa1112960:CDS |
| CATTCTGGCTTGCGTGATGA+CGG | 0.495763 | 7_3:+59109911 | Msa1112960:CDS |
| TCTGGCTTAGGATCTGGAGC+TGG | 0.499369 | 7_3:+59108400 | Msa1112960:CDS |
| CTTATTCTCTTAGGTGATCC+CGG | 0.501387 | 7_3:-59108560 | None:intergenic |
| ACCGGTGGAATTCCTCCAAT+AGG | 0.501435 | 7_3:+59108076 | Msa1112960:CDS |
| TCCTCGCCGGAGCATGTCAC+CGG | 0.504160 | 7_3:+59106079 | Msa1112960:CDS |
| GAGGAATTCCACCGGTCAGA+AGG | 0.505211 | 7_3:-59108069 | None:intergenic |
| ATAGGTGGCCCTTCCTTCTG+GGG | 0.506672 | 7_3:+59108339 | Msa1112960:intron |
| CGAGGAGGTGGAGGAGGAGA+CGG | 0.509853 | 7_3:-59106062 | None:intergenic |
| AAATAGCTGGGATCAGGCTA+TGG | 0.511594 | 7_3:+59109870 | Msa1112960:CDS |
| TGCAGGGTTCTGCTAGTAGA+TGG | 0.513146 | 7_3:+59109120 | Msa1112960:intron |
| TTTCTAGGTTTGAGAGAGTG+TGG | 0.523426 | 7_3:+59108522 | Msa1112960:intron |
| CATAAAACATTGGTGGGACT+GGG | 0.527966 | 7_3:-59110013 | None:intergenic |
| GCGATGGTAAGTCCGTTCAT+TGG | 0.527986 | 7_3:-59106037 | None:intergenic |
| GGAGGAGGAGACGGTGGCGA+TGG | 0.529291 | 7_3:-59106053 | None:intergenic |
| TTCTGGCTTGCGTGATGACG+GGG | 0.530180 | 7_3:+59109913 | Msa1112960:CDS |
| TGAATCTCATCAAACATCCA+TGG | 0.532905 | 7_3:-59109531 | None:intergenic |
| TTGTTCCAAATGCTGGACCT+TGG | 0.539407 | 7_3:+59107773 | Msa1112960:CDS |
| AGGGCTTGCGTCAGCCCTTG+TGG | 0.543083 | 7_3:-59108049 | None:intergenic |
| CTGACGCAAGCCCTTCTGAC+CGG | 0.547262 | 7_3:+59108058 | Msa1112960:CDS |
| TACTGTCCGAGAAGAAGGAT+TGG | 0.549609 | 7_3:+59109586 | Msa1112960:CDS |
| TCGTCTCATCTTAATGGACC+AGG | 0.557516 | 7_3:+59107518 | Msa1112960:CDS |
| GCGTGAGCTTCGGTGAGAAA+GGG | 0.558381 | 7_3:-59106011 | None:intergenic |
| GTCCCTCTCGATTACTCTCA+AGG | 0.558596 | 7_3:+59106151 | Msa1112960:CDS |
| GAATCTCATCAAACATCCAT+GGG | 0.559504 | 7_3:-59109530 | None:intergenic |
| GGTGATCCCGGAACTAAAGT+AGG | 0.561474 | 7_3:-59108548 | None:intergenic |
| TAGCTGAACAAGAAGGAGGA+GGG | 0.562297 | 7_3:+59108221 | Msa1112960:CDS |
| CATTATTATGTGAGGTGAGT+GGG | 0.563392 | 7_3:-59105870 | None:intergenic |
| TTCTAGGTTTGAGAGAGTGT+GGG | 0.563972 | 7_3:+59108523 | Msa1112960:intron |
| CATCCACTAGATTCAGTTGG+TGG | 0.568088 | 7_3:-59107471 | None:intergenic |
| AATTATTTAGCTGAACAAGA+AGG | 0.568672 | 7_3:+59108214 | Msa1112960:CDS |
| GGTGGTCGGCACTCATACCC+AGG | 0.569057 | 7_3:-59107453 | None:intergenic |
| AAGAGTCTGCAGCCCTCTTG+GGG | 0.573534 | 7_3:-59108371 | None:intergenic |
| AAGGTCCAGCATTTGGAACA+AGG | 0.574892 | 7_3:-59107771 | None:intergenic |
| TTAGCTGAACAAGAAGGAGG+AGG | 0.575861 | 7_3:+59108220 | Msa1112960:CDS |
| GGTGAGAAAGGGAGAGTCTG+AGG | 0.576570 | 7_3:-59106000 | None:intergenic |
| ACGCAAGCCCTTCTGACCGG+TGG | 0.577852 | 7_3:+59108061 | Msa1112960:CDS |
| CACTAGATTCAGTTGGTGGT+CGG | 0.578030 | 7_3:-59107467 | None:intergenic |
| TTACTGAAATAATGTCAGGT+TGG | 0.579653 | 7_3:+59110138 | Msa1112960:three_prime_UTR |
| AAACAGCTTCTCAAATAGCT+GGG | 0.579714 | 7_3:+59109858 | Msa1112960:CDS |
| TAGGTGGCCCTTCCTTCTGG+GGG | 0.580614 | 7_3:+59108340 | Msa1112960:intron |
| GTGCATCCATGTCCTATTGG+AGG | 0.585173 | 7_3:-59108088 | None:intergenic |
| ATCCATCCACTAGATTCAGT+TGG | 0.587259 | 7_3:-59107474 | None:intergenic |
| CACCAACTGAATCTAGTGGA+TGG | 0.590816 | 7_3:+59107472 | Msa1112960:CDS |
| TCCTATTGGAGGAATTCCAC+CGG | 0.590937 | 7_3:-59108077 | None:intergenic |
| GTGAGAAAGGGAGAGTCTGA+GGG | 0.591149 | 7_3:-59105999 | None:intergenic |
| GTACTACAAAAGATACCCTC+AGG | 0.591325 | 7_3:+59108165 | Msa1112960:CDS |
| CTAGGACATAAAACATTGGT+GGG | 0.597187 | 7_3:-59110019 | None:intergenic |
| ACATTATTATGTGAGGTGAG+TGG | 0.603531 | 7_3:-59105871 | None:intergenic |
| ACGAAGACGGAGTGAAGGTA+CGG | 0.607003 | 7_3:-59106113 | None:intergenic |
| AGCTGAACAAGAAGGAGGAG+GGG | 0.607085 | 7_3:+59108222 | Msa1112960:CDS |
| GGAATTCCTCCAATAGGACA+TGG | 0.607220 | 7_3:+59108082 | Msa1112960:CDS |
| GGTGACATGCTCCGGCGAGG+AGG | 0.609169 | 7_3:-59106077 | None:intergenic |
| ACCAAAGGCTAGGCAACGCT+AGG | 0.611720 | 7_3:-59110037 | None:intergenic |
| ACCTGCCCCAAAATTGTCCA+AGG | 0.613042 | 7_3:-59107790 | None:intergenic |
| AGCTCACGCATTCCAATGAA+CGG | 0.613457 | 7_3:+59106025 | Msa1112960:CDS |
| GGAGGTGGAGGAGGAGACGG+TGG | 0.618074 | 7_3:-59106059 | None:intergenic |
| ACAGTCTTCGACTAAGATCA+CGG | 0.618266 | 7_3:+59106177 | Msa1112960:CDS |
| TGATCTTAGTCGAAGACTGT+AGG | 0.619626 | 7_3:-59106174 | None:intergenic |
| GCTAGGACATAAAACATTGG+TGG | 0.619882 | 7_3:-59110020 | None:intergenic |
| AGGAATTCCACCGGTCAGAA+GGG | 0.624664 | 7_3:-59108068 | None:intergenic |
| TCTGGCTTGCGTGATGACGG+GGG | 0.627112 | 7_3:+59109914 | Msa1112960:CDS |
| CTGGGAGAGAAGAGTAACAA+TGG | 0.631254 | 7_3:-59109995 | None:intergenic |
| TCCGGTGACATGCTCCGGCG+AGG | 0.640777 | 7_3:-59106080 | None:intergenic |
| TGAATCTGTGATCACGAAGA+CGG | 0.643417 | 7_3:-59106126 | None:intergenic |
| AAATTATGGCAGAGTTACGG+TGG | 0.644222 | 7_3:+59107995 | Msa1112960:intron |
| TATTTAGCTGAACAAGAAGG+AGG | 0.644860 | 7_3:+59108217 | Msa1112960:CDS |
| GGCCTTGAGAGTAATCGAGA+GGG | 0.652247 | 7_3:-59106153 | None:intergenic |
| TGATCACGAAGACGGAGTGA+AGG | 0.654079 | 7_3:-59106118 | None:intergenic |
| GTCACAATTCAAGTCTGGAG+AGG | 0.655467 | 7_3:+59107678 | Msa1112960:CDS |
| GACATTGATGACACAGACAA+AGG | 0.656327 | 7_3:-59107658 | None:intergenic |
| CGACCACCAACTGAATCTAG+TGG | 0.661326 | 7_3:+59107468 | Msa1112960:CDS |
| GGGGCATCTTAACCCCAAGA+GGG | 0.663762 | 7_3:+59108359 | Msa1112960:CDS |
| AACGCTAGGACATAAAACAT+TGG | 0.665080 | 7_3:-59110023 | None:intergenic |
| AGGCCTTGAGAGTAATCGAG+AGG | 0.695258 | 7_3:-59106154 | None:intergenic |
| TGAGAAAGGGAGAGTCTGAG+GGG | 0.709822 | 7_3:-59105998 | None:intergenic |
| TCATGTAGAAGAGCATACAG+TGG | 0.712488 | 7_3:-59108715 | None:intergenic |
| TCAGGCATTGAATAACAACA+AGG | 0.725364 | 7_3:+59109626 | Msa1112960:CDS |
| GTGGTGAGAAGAAAAGATAG+TGG | 0.725726 | 7_3:-59105911 | None:intergenic |
| GTGAGAAGAAAAGATAGTGG+TGG | 0.729472 | 7_3:-59105908 | None:intergenic |
| GATAGCAACATTATTATGTG+AGG | 0.734191 | 7_3:-59105878 | None:intergenic |
| AAAGCGCGAAAAGAGTGACG+AGG | 0.743732 | 7_3:-59105950 | None:intergenic |
| AGGATGAAATTGGAGCAATG+TGG | 0.804271 | 7_3:-59105930 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTAATTATTTATTAA+TGG | + | chr7_3:59110221-59110240 | Msa1112960:three_prime_UTR | 0.0% |
| !! | AAAAGAAAAATTACTAAATT+TGG | + | chr7_3:59106814-59106833 | Msa1112960:intron | 10.0% |
| !! | AAAGAAAAATTACTAAATTT+GGG | + | chr7_3:59106815-59106834 | Msa1112960:intron | 10.0% |
| !! | ATTTCAGTAAATATAATAAT+AGG | - | chr7_3:59110128-59110147 | None:intergenic | 10.0% |
| !!! | AAATTATTTTCTATCATTTT+AGG | + | chr7_3:59110171-59110190 | Msa1112960:three_prime_UTR | 10.0% |
| !!! | ACAAAATTTATATTTCTATG+AGG | + | chr7_3:59107018-59107037 | Msa1112960:intron | 15.0% |
| !!! | CTTGTGTTATTTTTAAATTA+TGG | + | chr7_3:59107981-59108000 | Msa1112960:intron | 15.0% |
| !! | ATAATTGAATATGTTTATCA+AGG | + | chr7_3:59109716-59109735 | Msa1112960:intron | 15.0% |
| !! | ATTCAAGGAAAATAATTGAA+TGG | - | chr7_3:59106256-59106275 | None:intergenic | 20.0% |
| !! | TGAATTTCAAATTTATACCA+AGG | + | chr7_3:59106593-59106612 | Msa1112960:intron | 20.0% |
| !!! | TTCTTTTCTTTATGAAACTA+TGG | + | chr7_3:59106664-59106683 | Msa1112960:intron | 20.0% |
| !!! | TCTTTTCTTTATGAAACTAT+GGG | + | chr7_3:59106665-59106684 | Msa1112960:intron | 20.0% |
| !! | TAATCTTACAGCTATATAAT+TGG | + | chr7_3:59106875-59106894 | Msa1112960:intron | 20.0% |
| !! | AATCTTACAGCTATATAATT+GGG | + | chr7_3:59106876-59106895 | Msa1112960:intron | 20.0% |
| !!! | TTTTTTTTTCTTACCTTTCT+AGG | + | chr7_3:59108507-59108526 | Msa1112960:intron | 20.0% |
| !! | AAAAAATTCTTACAGCATTT+AGG | - | chr7_3:59108595-59108614 | None:intergenic | 20.0% |
| !! | AATATGTTAACAGAATAACT+TGG | - | chr7_3:59109755-59109774 | None:intergenic | 20.0% |
| !! | ATACATGTCTTCATAATAAA+CGG | - | chr7_3:59109816-59109835 | None:intergenic | 20.0% |
| !! | ATATTTACTGAAATAATGTC+AGG | + | chr7_3:59110134-59110153 | Msa1112960:three_prime_UTR | 20.0% |
| !! | ATTTAAAATCTTCATCCAAC+CGG | - | chr7_3:59105817-59105836 | None:intergenic | 25.0% |
| ! | TTCATGCAAATATGAATTCA+AGG | - | chr7_3:59106271-59106290 | None:intergenic | 25.0% |
| ! | GTATCGAATATTTAGTTATC+TGG | + | chr7_3:59106314-59106333 | Msa1112960:intron | 25.0% |
| ! | TGGAATGTAATCCAAATTAT+TGG | + | chr7_3:59106334-59106353 | Msa1112960:intron | 25.0% |
| ! | TCATTCAGAATCCAATAATT+TGG | - | chr7_3:59106348-59106367 | None:intergenic | 25.0% |
| ! | TGGATTCTCTTTACAATAAA+AGG | - | chr7_3:59106419-59106438 | None:intergenic | 25.0% |
| ! | ATAGTTAACATTTCCTAACA+GGG | - | chr7_3:59106724-59106743 | None:intergenic | 25.0% |
| ! | TGTTAGGAAATGTTAACTAT+GGG | + | chr7_3:59106724-59106743 | Msa1112960:intron | 25.0% |
| !! | TTATATTTCTATGAGGAATG+TGG | + | chr7_3:59107025-59107044 | Msa1112960:intron | 25.0% |
| ! | AAAAGAAATCTCTATGATTC+TGG | - | chr7_3:59107184-59107203 | None:intergenic | 25.0% |
| ! | CCTTGCAAAAATAGTAAATA+TGG | - | chr7_3:59107429-59107448 | None:intergenic | 25.0% |
| !!! | CCATATTTACTATTTTTGCA+AGG | + | chr7_3:59107426-59107445 | Msa1112960:CDS | 25.0% |
| !!! | TATTTACTATTTTTGCAAGG+TGG | + | chr7_3:59107429-59107448 | Msa1112960:CDS | 25.0% |
| ! | TTTGTATGTGTGATAACTTT+AGG | + | chr7_3:59107578-59107597 | Msa1112960:intron | 25.0% |
| ! | ATTGAATTTCAAGGTTACAT+TGG | - | chr7_3:59107947-59107966 | None:intergenic | 25.0% |
| ! | TAAGCAATCATTGAATTTCA+AGG | - | chr7_3:59107956-59107975 | None:intergenic | 25.0% |
| ! | TTTAAATTATGGCAGAGTTA+CGG | + | chr7_3:59107992-59108011 | Msa1112960:intron | 25.0% |
| ! | AATTATTTAGCTGAACAAGA+AGG | + | chr7_3:59108214-59108233 | Msa1112960:CDS | 25.0% |
| !! | GTATAAGAATTTCAAGTAGT+TGG | - | chr7_3:59109030-59109049 | None:intergenic | 25.0% |
| ! | ACTTGAAATTCTTATACTGT+TGG | + | chr7_3:59109033-59109052 | Msa1112960:intron | 25.0% |
| ! | CTTGAAATTCTTATACTGTT+GGG | + | chr7_3:59109034-59109053 | Msa1112960:intron | 25.0% |
| ! | ATGAAGTTATAAAGTCTGTT+TGG | - | chr7_3:59109355-59109374 | None:intergenic | 25.0% |
| ! | TTCTAAATATAATGTGAGTG+CGG | - | chr7_3:59109661-59109680 | None:intergenic | 25.0% |
| ! | TCATATTATACTATGATCAC+AGG | + | chr7_3:59109775-59109794 | Msa1112960:intron | 25.0% |
| ! | AAAGTTCTTGATCATTTGTT+GGG | + | chr7_3:59109938-59109957 | Msa1112960:CDS | 25.0% |
| ! | AAAGAAGTTCAAAAAACCAA+AGG | - | chr7_3:59110055-59110074 | None:intergenic | 25.0% |
| !!! | TATCATTTTAGGTGTTTTGT+AGG | + | chr7_3:59110182-59110201 | Msa1112960:three_prime_UTR | 25.0% |
| GATAGCAACATTATTATGTG+AGG | - | chr7_3:59105881-59105900 | None:intergenic | 30.0% | |
| ! | GAGAATCCAAATCATTTTAG+TGG | + | chr7_3:59106430-59106449 | Msa1112960:intron | 30.0% |
| GAAACTATGGGACATATAAT+TGG | + | chr7_3:59106677-59106696 | Msa1112960:intron | 30.0% | |
| CATAGTTAACATTTCCTAAC+AGG | - | chr7_3:59106725-59106744 | None:intergenic | 30.0% | |
| CTGTTAGGAAATGTTAACTA+TGG | + | chr7_3:59106723-59106742 | Msa1112960:intron | 30.0% | |
| GTTAGGAAATGTTAACTATG+GGG | + | chr7_3:59106725-59106744 | Msa1112960:intron | 30.0% | |
| TTAACTATGGGGCATATATA+TGG | + | chr7_3:59106736-59106755 | Msa1112960:intron | 30.0% | |
| TAACTATGGGGCATATATAT+GGG | + | chr7_3:59106737-59106756 | Msa1112960:intron | 30.0% | |
| CACTCTTTAAGCACTTTAAA+CGG | + | chr7_3:59106783-59106802 | Msa1112960:intron | 30.0% | |
| ATGGTATTACTGGTGAAATT+TGG | + | chr7_3:59106970-59106989 | Msa1112960:intron | 30.0% | |
| TGTTGGAATATCCTATGTTT+CGG | + | chr7_3:59107078-59107097 | Msa1112960:intron | 30.0% | |
| ! | ATCACACGAAATTTTCTATG+TGG | - | chr7_3:59107271-59107290 | None:intergenic | 30.0% |
| !!! | TAATTTTTTAGACTGCCTGA+TGG | + | chr7_3:59107297-59107316 | Msa1112960:intron | 30.0% |
| TAAAGCAATGCTAAAGACTA+TGG | - | chr7_3:59107856-59107875 | None:intergenic | 30.0% | |
| ATAGTCTTTAGCATTGCTTT+AGG | + | chr7_3:59107855-59107874 | Msa1112960:intron | 30.0% | |
| TAGTCTTTAGCATTGCTTTA+GGG | + | chr7_3:59107856-59107875 | Msa1112960:intron | 30.0% | |
| !! | GAACAATTTTGATATCCTGA+GGG | - | chr7_3:59108183-59108202 | None:intergenic | 30.0% |
| !! | TGAACAATTTTGATATCCTG+AGG | - | chr7_3:59108184-59108203 | None:intergenic | 30.0% |
| AATAAGGAATTGAGCAAACT+TGG | - | chr7_3:59108299-59108318 | None:intergenic | 30.0% | |
| AAGTAGTGACTTATTCTCTT+AGG | - | chr7_3:59108572-59108591 | None:intergenic | 30.0% | |
| AAACTGCATAGAACAAAAAC+TGG | - | chr7_3:59108668-59108687 | None:intergenic | 30.0% | |
| ! | AAGTTTTACCTGACAATAGA+TGG | - | chr7_3:59108743-59108762 | None:intergenic | 30.0% |
| ! | TGTCAGGTAAAACTTCTTTT+CGG | + | chr7_3:59108748-59108767 | Msa1112960:intron | 30.0% |
| ACCAACTATTGTGAAAGTTT+AGG | + | chr7_3:59108796-59108815 | Msa1112960:intron | 30.0% | |
| ! | TTGAAGCATTAACAATGCTT+AGG | + | chr7_3:59108898-59108917 | Msa1112960:intron | 30.0% |
| ! | TTATACAGATGATTTTCCCA+TGG | + | chr7_3:59109514-59109533 | Msa1112960:intron | 30.0% |
| TACATCTTTGAATGGTTTCA+AGG | - | chr7_3:59109559-59109578 | None:intergenic | 30.0% | |
| ATATGAGCTACATCTTTGAA+TGG | - | chr7_3:59109567-59109586 | None:intergenic | 30.0% | |
| TGCCTGAATGTCATATAATT+GGG | - | chr7_3:59109613-59109632 | None:intergenic | 30.0% | |
| ATGCCTGAATGTCATATAAT+TGG | - | chr7_3:59109614-59109633 | None:intergenic | 30.0% | |
| TAACAGAATAACTTGGAGAT+TGG | - | chr7_3:59109748-59109767 | None:intergenic | 30.0% | |
| CAAAGTTCTTGATCATTTGT+TGG | + | chr7_3:59109937-59109956 | Msa1112960:CDS | 30.0% | |
| ! | CATTTGTTGGGAATGTTAAA+CGG | + | chr7_3:59109950-59109969 | Msa1112960:CDS | 30.0% |
| AACAATGGTGATCAAAATAG+AGG | - | chr7_3:59109983-59110002 | None:intergenic | 30.0% | |
| TTACTGAAATAATGTCAGGT+TGG | + | chr7_3:59110138-59110157 | Msa1112960:three_prime_UTR | 30.0% | |
| CATTATTATGTGAGGTGAGT+GGG | - | chr7_3:59105873-59105892 | None:intergenic | 35.0% | |
| ACATTATTATGTGAGGTGAG+TGG | - | chr7_3:59105874-59105893 | None:intergenic | 35.0% | |
| CAACGTCCACTAAAATGATT+TGG | - | chr7_3:59106439-59106458 | None:intergenic | 35.0% | |
| !! | CAAATCATTTTAGTGGACGT+TGG | + | chr7_3:59106437-59106456 | Msa1112960:intron | 35.0% |
| ! | TTAGTGGACGTTGGAAATTA+CGG | + | chr7_3:59106446-59106465 | Msa1112960:intron | 35.0% |
| ! | CCAAGCAGTTAAAATTTTGG+CGG | - | chr7_3:59106553-59106572 | None:intergenic | 35.0% |
| !!! | CGCCAAAATTTTAACTGCTT+GGG | + | chr7_3:59106551-59106570 | Msa1112960:intron | 35.0% |
| !!! | GCCAAAATTTTAACTGCTTG+GGG | + | chr7_3:59106552-59106571 | Msa1112960:intron | 35.0% |
| CAAATTTATACCAAGGCCTA+AGG | + | chr7_3:59106600-59106619 | Msa1112960:intron | 35.0% | |
| TTCACACTTTATGACACCTT+AGG | - | chr7_3:59106619-59106638 | None:intergenic | 35.0% | |
| !! | AAAGTGCTTAAAGAGTGTCT+GGG | - | chr7_3:59106780-59106799 | None:intergenic | 35.0% |
| !! | TAAAGTGCTTAAAGAGTGTC+TGG | - | chr7_3:59106781-59106800 | None:intergenic | 35.0% |
| ! | TATAATTGGGATGATTTGCC+TGG | + | chr7_3:59106889-59106908 | Msa1112960:intron | 35.0% |
| ! | ATAATTGGGATGATTTGCCT+GGG | + | chr7_3:59106890-59106909 | Msa1112960:intron | 35.0% |
| ! | GTCATTGACATGAGTTTGTT+TGG | + | chr7_3:59106928-59106947 | Msa1112960:intron | 35.0% |
| ! | TGACATGAGTTTGTTTGGAT+AGG | + | chr7_3:59106933-59106952 | Msa1112960:intron | 35.0% |
| TCCCAGTTTCATATGACATA+CGG | + | chr7_3:59106994-59107013 | Msa1112960:intron | 35.0% | |
| ACCGTATGTCATATGAAACT+GGG | - | chr7_3:59106998-59107017 | None:intergenic | 35.0% | |
| TACCGTATGTCATATGAAAC+TGG | - | chr7_3:59106999-59107018 | None:intergenic | 35.0% | |
| GCTGATCATGCATTTAATGT+TGG | + | chr7_3:59107061-59107080 | Msa1112960:intron | 35.0% | |
| GCTCTAGTGTTAACTAGAAA+TGG | + | chr7_3:59107121-59107140 | Msa1112960:intron | 35.0% | |
| AAAAATGCCAACGTGACAAA+GGG | - | chr7_3:59107355-59107374 | None:intergenic | 35.0% | |
| AAAAAATGCCAACGTGACAA+AGG | - | chr7_3:59107356-59107375 | None:intergenic | 35.0% | |
| !!! | GTCTTTTGTTTTGTTGCAGT+TGG | + | chr7_3:59107384-59107403 | Msa1112960:intron | 35.0% |
| ACAGTTTCGTCTCATCTTAA+TGG | + | chr7_3:59107512-59107531 | Msa1112960:CDS | 35.0% | |
| ! | GCAGAGAAGTACATAAGTAA+TGG | - | chr7_3:59107615-59107634 | None:intergenic | 35.0% |
| TCAATGTCACAATTCAAGTC+TGG | + | chr7_3:59107673-59107692 | Msa1112960:CDS | 35.0% | |
| AGTCTTTAGCATTGCTTTAG+GGG | + | chr7_3:59107857-59107876 | Msa1112960:intron | 35.0% | |
| !! | TATTTGAGTTTTGCACCACA+AGG | + | chr7_3:59108034-59108053 | Msa1112960:CDS | 35.0% |
| !! | ATTTGAGTTTTGCACCACAA+GGG | + | chr7_3:59108035-59108054 | Msa1112960:CDS | 35.0% |
| TATTTAGCTGAACAAGAAGG+AGG | + | chr7_3:59108217-59108236 | Msa1112960:CDS | 35.0% | |
| TGCAAAGAGAAAGGGAAATA+AGG | - | chr7_3:59108315-59108334 | None:intergenic | 35.0% | |
| CTATGCTATGCAAAGAGAAA+GGG | - | chr7_3:59108323-59108342 | None:intergenic | 35.0% | |
| ATAGAACAAAAACTGGAGGT+CGG | - | chr7_3:59108661-59108680 | None:intergenic | 35.0% | |
| ACATGAATCCATCTATTGTC+AGG | + | chr7_3:59108732-59108751 | Msa1112960:CDS | 35.0% | |
| GCCTAAACTTTCACAATAGT+TGG | - | chr7_3:59108800-59108819 | None:intergenic | 35.0% | |
| TTGTGAAAGTTTAGGCTGAT+AGG | + | chr7_3:59108804-59108823 | Msa1112960:intron | 35.0% | |
| !! | GTTAAATTTTAGCGCAAGAC+AGG | - | chr7_3:59108928-59108947 | None:intergenic | 35.0% |
| GTTGGGTAACAACATATGAA+TGG | + | chr7_3:59109051-59109070 | Msa1112960:intron | 35.0% | |
| AACTTCAGTCCTTATTCTAC+TGG | - | chr7_3:59109150-59109169 | None:intergenic | 35.0% | |
| GCAATTAAAGCTGCTAAAGA+AGG | + | chr7_3:59109185-59109204 | Msa1112960:CDS | 35.0% | |
| !! | GGACTACCTATACTTTTTAC+AGG | + | chr7_3:59109206-59109225 | Msa1112960:CDS | 35.0% |
| !! | ACCTATACTTTTTACAGGAG+AGG | + | chr7_3:59109211-59109230 | Msa1112960:CDS | 35.0% |
| ! | ACCTCTCCTGTAAAAAGTAT+AGG | - | chr7_3:59109215-59109234 | None:intergenic | 35.0% |
| GAATCTCATCAAACATCCAT+GGG | - | chr7_3:59109533-59109552 | None:intergenic | 35.0% | |
| TGAATCTCATCAAACATCCA+TGG | - | chr7_3:59109534-59109553 | None:intergenic | 35.0% | |
| GTCCCAATTATATGACATTC+AGG | + | chr7_3:59109608-59109627 | Msa1112960:CDS | 35.0% | |
| !! | TCAGGCATTGAATAACAACA+AGG | + | chr7_3:59109626-59109645 | Msa1112960:CDS | 35.0% |
| AAATATAATGTGAGTGCGGA+GGG | - | chr7_3:59109657-59109676 | None:intergenic | 35.0% | |
| TAAATATAATGTGAGTGCGG+AGG | - | chr7_3:59109658-59109677 | None:intergenic | 35.0% | |
| ! | TGTGAATTTTAAGCTGTCGA+AGG | + | chr7_3:59109835-59109854 | Msa1112960:CDS | 35.0% |
| AAACAGCTTCTCAAATAGCT+GGG | + | chr7_3:59109858-59109877 | Msa1112960:CDS | 35.0% | |
| ACTAATGAGTTCATGCATTC+TGG | + | chr7_3:59109896-59109915 | Msa1112960:CDS | 35.0% | |
| CTAGGACATAAAACATTGGT+GGG | - | chr7_3:59110022-59110041 | None:intergenic | 35.0% | |
| AACGCTAGGACATAAAACAT+TGG | - | chr7_3:59110026-59110045 | None:intergenic | 35.0% | |
| AGTTCAAAAAACCAAAGGCT+AGG | - | chr7_3:59110050-59110069 | None:intergenic | 35.0% | |
| ! | GTGAGAAGAAAAGATAGTGG+TGG | - | chr7_3:59105911-59105930 | None:intergenic | 40.0% |
| GTGGTGAGAAGAAAAGATAG+TGG | - | chr7_3:59105914-59105933 | None:intergenic | 40.0% | |
| AGGATGAAATTGGAGCAATG+TGG | - | chr7_3:59105933-59105952 | None:intergenic | 40.0% | |
| AAGAGTGACGAGGATGAAAT+TGG | - | chr7_3:59105943-59105962 | None:intergenic | 40.0% | |
| !!! | TGAGGGGTTTTGAGAAAAGA+GGG | - | chr7_3:59105985-59106004 | None:intergenic | 40.0% |
| TGAATCTGTGATCACGAAGA+CGG | - | chr7_3:59106129-59106148 | None:intergenic | 40.0% | |
| TGATCTTAGTCGAAGACTGT+AGG | - | chr7_3:59106177-59106196 | None:intergenic | 40.0% | |
| ACAGTCTTCGACTAAGATCA+CGG | + | chr7_3:59106177-59106196 | Msa1112960:CDS | 40.0% | |
| GTGAGTTTGACAGAATCACA+TGG | + | chr7_3:59106468-59106487 | Msa1112960:intron | 40.0% | |
| !! | AAAGCTGCACTTTAGAGCTT+CGG | - | chr7_3:59106509-59106528 | None:intergenic | 40.0% |
| !!! | CCGCCAAAATTTTAACTGCT+TGG | + | chr7_3:59106550-59106569 | Msa1112960:intron | 40.0% |
| ! | GCCCCAAGCAGTTAAAATTT+TGG | - | chr7_3:59106556-59106575 | None:intergenic | 40.0% |
| !! | TTGGGGCTTTTTGTTACTTG+AGG | + | chr7_3:59106569-59106588 | Msa1112960:intron | 40.0% |
| AGATTATTCGAGTCCCTGTT+AGG | + | chr7_3:59106708-59106727 | Msa1112960:intron | 40.0% | |
| !! | AAGTGCTTAAAGAGTGTCTG+GGG | - | chr7_3:59106779-59106798 | None:intergenic | 40.0% |
| !! | ATGGCTTTGGATGGTATTAC+TGG | + | chr7_3:59106960-59106979 | Msa1112960:intron | 40.0% |
| ! | AATATCCTATGTTTCGGTGC+TGG | + | chr7_3:59107084-59107103 | Msa1112960:intron | 40.0% |
| TCTCTATGATTCTGGACTTG+AGG | - | chr7_3:59107176-59107195 | None:intergenic | 40.0% | |
| CTATGTGGCTGATCAAAAAC+TGG | - | chr7_3:59107256-59107275 | None:intergenic | 40.0% | |
| AAAATGCCAACGTGACAAAG+GGG | - | chr7_3:59107354-59107373 | None:intergenic | 40.0% | |
| !! | TATTTTTGCAAGGTGGTCCT+GGG | + | chr7_3:59107436-59107455 | Msa1112960:CDS | 40.0% |
| ATCCATCCACTAGATTCAGT+TGG | - | chr7_3:59107477-59107496 | None:intergenic | 40.0% | |
| !! | ATGGACCAGGCATGTTTTTA+TGG | + | chr7_3:59107531-59107550 | Msa1112960:intron | 40.0% |
| AGTGTCCATAAAAACATGCC+TGG | - | chr7_3:59107539-59107558 | None:intergenic | 40.0% | |
| ! | GACATTGATGACACAGACAA+AGG | - | chr7_3:59107661-59107680 | None:intergenic | 40.0% |
| !! | TTTCTTGATTTGTGAGCACG+TGG | + | chr7_3:59107888-59107907 | Msa1112960:intron | 40.0% |
| AAATTATGGCAGAGTTACGG+TGG | + | chr7_3:59107995-59108014 | Msa1112960:intron | 40.0% | |
| GTACTACAAAAGATACCCTC+AGG | + | chr7_3:59108165-59108184 | Msa1112960:CDS | 40.0% | |
| CCTATGCTATGCAAAGAGAA+AGG | - | chr7_3:59108324-59108343 | None:intergenic | 40.0% | |
| CCTTTCTCTTTGCATAGCAT+AGG | + | chr7_3:59108321-59108340 | Msa1112960:intron | 40.0% | |
| TTCTCTTTGCATAGCATAGG+TGG | + | chr7_3:59108324-59108343 | Msa1112960:intron | 40.0% | |
| ACACTCTCTCAAACCTAGAA+AGG | - | chr7_3:59108523-59108542 | None:intergenic | 40.0% | |
| TTTCTAGGTTTGAGAGAGTG+TGG | + | chr7_3:59108522-59108541 | Msa1112960:intron | 40.0% | |
| ! | TTCTAGGTTTGAGAGAGTGT+GGG | + | chr7_3:59108523-59108542 | Msa1112960:intron | 40.0% |
| CTTATTCTCTTAGGTGATCC+CGG | - | chr7_3:59108563-59108582 | None:intergenic | 40.0% | |
| CTGCATAGAACAAAAACTGG+AGG | - | chr7_3:59108665-59108684 | None:intergenic | 40.0% | |
| ! | TCATGTAGAAGAGCATACAG+TGG | - | chr7_3:59108718-59108737 | None:intergenic | 40.0% |
| TCATGACAAATGCATACACG+AGG | - | chr7_3:59108776-59108795 | None:intergenic | 40.0% | |
| ATGTCCCTGATGTAACTAAG+AGG | + | chr7_3:59108868-59108887 | Msa1112960:intron | 40.0% | |
| TGTCCCTGATGTAACTAAGA+GGG | + | chr7_3:59108869-59108888 | Msa1112960:intron | 40.0% | |
| AAGCCCTCTTAGTTACATCA+GGG | - | chr7_3:59108875-59108894 | None:intergenic | 40.0% | |
| GAGCATCAAAGATTGAACTC+TGG | + | chr7_3:59108966-59108985 | Msa1112960:intron | 40.0% | |
| AGATTGAACTCTGGATCACT+TGG | + | chr7_3:59108975-59108994 | Msa1112960:intron | 40.0% | |
| ! | CAAGTAGTTGGTTCATGACA+TGG | - | chr7_3:59109018-59109037 | None:intergenic | 40.0% |
| TGCAATTGCAGAGACATGAA+AGG | - | chr7_3:59109403-59109422 | None:intergenic | 40.0% | |
| TCATATACTGTCCGAGAAGA+AGG | + | chr7_3:59109581-59109600 | Msa1112960:CDS | 40.0% | |
| GAAACAGCTTCTCAAATAGC+TGG | + | chr7_3:59109857-59109876 | Msa1112960:CDS | 40.0% | |
| CATAAAACATTGGTGGGACT+GGG | - | chr7_3:59110016-59110035 | None:intergenic | 40.0% | |
| ACATAAAACATTGGTGGGAC+TGG | - | chr7_3:59110017-59110036 | None:intergenic | 40.0% | |
| GCTAGGACATAAAACATTGG+TGG | - | chr7_3:59110023-59110042 | None:intergenic | 40.0% | |
| !!! | CTGAGGGGTTTTGAGAAAAG+AGG | - | chr7_3:59105986-59106005 | None:intergenic | 45.0% |
| TCATTGGAATGCGTGAGCTT+CGG | - | chr7_3:59106024-59106043 | None:intergenic | 45.0% | |
| AGCTCACGCATTCCAATGAA+CGG | + | chr7_3:59106025-59106044 | Msa1112960:CDS | 45.0% | |
| AGAGCTTCGGCAAAATCACT+TGG | - | chr7_3:59106496-59106515 | None:intergenic | 45.0% | |
| ! | TGCAGCTTTTGTCAAAACCC+TGG | + | chr7_3:59106520-59106539 | Msa1112960:intron | 45.0% |
| ! | CTTTTGTCAAAACCCTGGTG+CGG | + | chr7_3:59106525-59106544 | Msa1112960:intron | 45.0% |
| CTTTATGACACCTTAGGCCT+TGG | - | chr7_3:59106613-59106632 | None:intergenic | 45.0% | |
| !! | AGTGCTTAAAGAGTGTCTGG+GGG | - | chr7_3:59106778-59106797 | None:intergenic | 45.0% |
| GTTTGTTTGGATAGGCGACA+TGG | + | chr7_3:59106941-59106960 | Msa1112960:intron | 45.0% | |
| AAATGCCAACGTGACAAAGG+GGG | - | chr7_3:59107353-59107372 | None:intergenic | 45.0% | |
| !!! | CTATTTTTGCAAGGTGGTCC+TGG | + | chr7_3:59107435-59107454 | Msa1112960:CDS | 45.0% |
| !! | CACTAGATTCAGTTGGTGGT+CGG | - | chr7_3:59107470-59107489 | None:intergenic | 45.0% |
| CATCCACTAGATTCAGTTGG+TGG | - | chr7_3:59107474-59107493 | None:intergenic | 45.0% | |
| CACCAACTGAATCTAGTGGA+TGG | + | chr7_3:59107472-59107491 | Msa1112960:CDS | 45.0% | |
| ! | TCGTCTCATCTTAATGGACC+AGG | + | chr7_3:59107518-59107537 | Msa1112960:CDS | 45.0% |
| TTATGTACTTCTCTGCAGCG+AGG | + | chr7_3:59107619-59107638 | Msa1112960:intron | 45.0% | |
| GTCACAATTCAAGTCTGGAG+AGG | + | chr7_3:59107678-59107697 | Msa1112960:CDS | 45.0% | |
| ! | AAGGTCCAGCATTTGGAACA+AGG | - | chr7_3:59107774-59107793 | None:intergenic | 45.0% |
| TTGTTCCAAATGCTGGACCT+TGG | + | chr7_3:59107773-59107792 | Msa1112960:CDS | 45.0% | |
| ATTGTCCAAGGTCCAGCATT+TGG | - | chr7_3:59107781-59107800 | None:intergenic | 45.0% | |
| ! | TGCTGGACCTTGGACAATTT+TGG | + | chr7_3:59107783-59107802 | Msa1112960:CDS | 45.0% |
| ! | GCTGGACCTTGGACAATTTT+GGG | + | chr7_3:59107784-59107803 | Msa1112960:CDS | 45.0% |
| ! | CTGGACCTTGGACAATTTTG+GGG | + | chr7_3:59107785-59107804 | Msa1112960:CDS | 45.0% |
| !! | CAAGGTTACATTGGCTTCGA+GGG | - | chr7_3:59107938-59107957 | None:intergenic | 45.0% |
| !! | TCAAGGTTACATTGGCTTCG+AGG | - | chr7_3:59107939-59107958 | None:intergenic | 45.0% |
| TCCTATTGGAGGAATTCCAC+CGG | - | chr7_3:59108080-59108099 | None:intergenic | 45.0% | |
| GGAATTCCTCCAATAGGACA+TGG | + | chr7_3:59108082-59108101 | Msa1112960:CDS | 45.0% | |
| TTAGCTGAACAAGAAGGAGG+AGG | + | chr7_3:59108220-59108239 | Msa1112960:CDS | 45.0% | |
| TAGCTGAACAAGAAGGAGGA+GGG | + | chr7_3:59108221-59108240 | Msa1112960:CDS | 45.0% | |
| ! | GTGGGATCCTACTTTAGTTC+CGG | + | chr7_3:59108541-59108560 | Msa1112960:CDS | 45.0% |
| ! | TGGGATCCTACTTTAGTTCC+GGG | + | chr7_3:59108542-59108561 | Msa1112960:CDS | 45.0% |
| !! | ACTGGAGGTCGGTTTTCAAA+AGG | - | chr7_3:59108650-59108669 | None:intergenic | 45.0% |
| CAAGCCCTCTTAGTTACATC+AGG | - | chr7_3:59108876-59108895 | None:intergenic | 45.0% | |
| GATGGTCTGCCAGTAGAATA+AGG | + | chr7_3:59109138-59109157 | Msa1112960:CDS | 45.0% | |
| CATGTCTCTGCAATTGCAGT+CGG | + | chr7_3:59109405-59109424 | Msa1112960:intron | 45.0% | |
| TACTGTCCGAGAAGAAGGAT+TGG | + | chr7_3:59109586-59109605 | Msa1112960:CDS | 45.0% | |
| TTGGGACCAATCCTTCTTCT+CGG | - | chr7_3:59109595-59109614 | None:intergenic | 45.0% | |
| TAATAAACGGCAGCTGCAAC+AGG | - | chr7_3:59109803-59109822 | None:intergenic | 45.0% | |
| CTTCTCAAATAGCTGGGATC+AGG | + | chr7_3:59109864-59109883 | Msa1112960:CDS | 45.0% | |
| AAATAGCTGGGATCAGGCTA+TGG | + | chr7_3:59109870-59109889 | Msa1112960:CDS | 45.0% | |
| CTGGGAGAGAAGAGTAACAA+TGG | - | chr7_3:59109998-59110017 | None:intergenic | 45.0% | |
| AAAGCGCGAAAAGAGTGACG+AGG | - | chr7_3:59105953-59105972 | None:intergenic | 50.0% | |
| TGAGAAAGGGAGAGTCTGAG+GGG | - | chr7_3:59106001-59106020 | None:intergenic | 50.0% | |
| GTGAGAAAGGGAGAGTCTGA+GGG | - | chr7_3:59106002-59106021 | None:intergenic | 50.0% | |
| GCGATGGTAAGTCCGTTCAT+TGG | - | chr7_3:59106040-59106059 | None:intergenic | 50.0% | |
| AGGTACGGAGAACCAATCTC+CGG | - | chr7_3:59106101-59106120 | None:intergenic | 50.0% | |
| ACGAAGACGGAGTGAAGGTA+CGG | - | chr7_3:59106116-59106135 | None:intergenic | 50.0% | |
| TGATCACGAAGACGGAGTGA+AGG | - | chr7_3:59106121-59106140 | None:intergenic | 50.0% | |
| GTCCCTCTCGATTACTCTCA+AGG | + | chr7_3:59106151-59106170 | Msa1112960:CDS | 50.0% | |
| GGCCTTGAGAGTAATCGAGA+GGG | - | chr7_3:59106156-59106175 | None:intergenic | 50.0% | |
| AGGCCTTGAGAGTAATCGAG+AGG | - | chr7_3:59106157-59106176 | None:intergenic | 50.0% | |
| TTCGCTCGTGAAGTTGTTGC+AGG | + | chr7_3:59106202-59106221 | Msa1112960:CDS | 50.0% | |
| !! | GGGATCCTTAAAGAGTGCCT+CGG | + | chr7_3:59106835-59106854 | Msa1112960:intron | 50.0% |
| !! | GGATCCTTAAAGAGTGCCTC+GGG | + | chr7_3:59106836-59106855 | Msa1112960:intron | 50.0% |
| !! | GATCCTTAAAGAGTGCCTCG+GGG | + | chr7_3:59106837-59106856 | Msa1112960:intron | 50.0% |
| !! | ATCCTTAAAGAGTGCCTCGG+GGG | + | chr7_3:59106838-59106857 | Msa1112960:intron | 50.0% |
| TATATATACGAGTGCCCCCG+AGG | - | chr7_3:59106855-59106874 | None:intergenic | 50.0% | |
| ATTTGCCTGGGATGAGGACA+TGG | + | chr7_3:59106902-59106921 | Msa1112960:intron | 50.0% | |
| TTGGATAGGCGACATGGCTT+TGG | + | chr7_3:59106947-59106966 | Msa1112960:intron | 50.0% | |
| !! | ATAGGCGACATGGCTTTGGA+TGG | + | chr7_3:59106951-59106970 | Msa1112960:intron | 50.0% |
| ! | GTTTGCCAGCACCGAAACAT+AGG | - | chr7_3:59107092-59107111 | None:intergenic | 50.0% |
| AGCACAAGTGCTCATCCATC+AGG | - | chr7_3:59107315-59107334 | None:intergenic | 50.0% | |
| AATCACCCCCTTTGTCACGT+TGG | + | chr7_3:59107345-59107364 | Msa1112960:intron | 50.0% | |
| CGACCACCAACTGAATCTAG+TGG | + | chr7_3:59107468-59107487 | Msa1112960:CDS | 50.0% | |
| ! | GTTCGCCTTGTTCCAAATGC+TGG | + | chr7_3:59107766-59107785 | Msa1112960:CDS | 50.0% |
| !!! | ACCTTGGACAATTTTGGGGC+AGG | + | chr7_3:59107789-59107808 | Msa1112960:CDS | 50.0% |
| ACCTGCCCCAAAATTGTCCA+AGG | - | chr7_3:59107793-59107812 | None:intergenic | 50.0% | |
| AGGAATTCCACCGGTCAGAA+GGG | - | chr7_3:59108071-59108090 | None:intergenic | 50.0% | |
| ACCGGTGGAATTCCTCCAAT+AGG | + | chr7_3:59108076-59108095 | Msa1112960:CDS | 50.0% | |
| GTGCATCCATGTCCTATTGG+AGG | - | chr7_3:59108091-59108110 | None:intergenic | 50.0% | |
| GCAGTGCATCCATGTCCTAT+TGG | - | chr7_3:59108094-59108113 | None:intergenic | 50.0% | |
| AGCTGAACAAGAAGGAGGAG+GGG | + | chr7_3:59108222-59108241 | Msa1112960:CDS | 50.0% | |
| TAAGATGCCCCCAGAAGGAA+GGG | - | chr7_3:59108350-59108369 | None:intergenic | 50.0% | |
| TTAAGATGCCCCCAGAAGGA+AGG | - | chr7_3:59108351-59108370 | None:intergenic | 50.0% | |
| ! | ACTCTTGGTCTCTCTGGCTT+AGG | + | chr7_3:59108388-59108407 | Msa1112960:CDS | 50.0% |
| GGTGATCCCGGAACTAAAGT+AGG | - | chr7_3:59108551-59108570 | None:intergenic | 50.0% | |
| TTGTTCTCCCTTGACACTGC+AGG | + | chr7_3:59109103-59109122 | Msa1112960:intron | 50.0% | |
| TGTTCTCCCTTGACACTGCA+GGG | + | chr7_3:59109104-59109123 | Msa1112960:intron | 50.0% | |
| TGCAGGGTTCTGCTAGTAGA+TGG | + | chr7_3:59109120-59109139 | Msa1112960:intron | 50.0% | |
| TTGGCTCAGCTTCGCATATG+TGG | - | chr7_3:59109336-59109355 | None:intergenic | 50.0% | |
| ! | CAATTGCAGTCGGCTTATGC+AGG | + | chr7_3:59109415-59109434 | Msa1112960:intron | 50.0% |
| !! | CATTCTGGCTTGCGTGATGA+CGG | + | chr7_3:59109911-59109930 | Msa1112960:CDS | 50.0% |
| !! | ATTCTGGCTTGCGTGATGAC+GGG | + | chr7_3:59109912-59109931 | Msa1112960:CDS | 50.0% |
| GGTGAGAAAGGGAGAGTCTG+AGG | - | chr7_3:59106003-59106022 | None:intergenic | 55.0% | |
| GCGTGAGCTTCGGTGAGAAA+GGG | - | chr7_3:59106014-59106033 | None:intergenic | 55.0% | |
| TGCGTGAGCTTCGGTGAGAA+AGG | - | chr7_3:59106015-59106034 | None:intergenic | 55.0% | |
| CAATCTCCGGTGACATGCTC+CGG | - | chr7_3:59106088-59106107 | None:intergenic | 55.0% | |
| !! | ATTTTGGCGGAACCGCACCA+GGG | - | chr7_3:59106540-59106559 | None:intergenic | 55.0% |
| !! | AATTTTGGCGGAACCGCACC+AGG | - | chr7_3:59106541-59106560 | None:intergenic | 55.0% |
| ! | GGGATGATTTGCCTGGGATG+AGG | + | chr7_3:59106896-59106915 | Msa1112960:intron | 55.0% |
| ACTTCTCTGCAGCGAGGAAC+AGG | + | chr7_3:59107625-59107644 | Msa1112960:intron | 55.0% | |
| GAGGAATTCCACCGGTCAGA+AGG | - | chr7_3:59108072-59108091 | None:intergenic | 55.0% | |
| CATAGGTGGCCCTTCCTTCT+GGG | + | chr7_3:59108338-59108357 | Msa1112960:intron | 55.0% | |
| ATAGGTGGCCCTTCCTTCTG+GGG | + | chr7_3:59108339-59108358 | Msa1112960:intron | 55.0% | |
| ! | GGGGCATCTTAACCCCAAGA+GGG | + | chr7_3:59108359-59108378 | Msa1112960:CDS | 55.0% |
| AAGAGTCTGCAGCCCTCTTG+GGG | - | chr7_3:59108374-59108393 | None:intergenic | 55.0% | |
| CAAGAGTCTGCAGCCCTCTT+GGG | - | chr7_3:59108375-59108394 | None:intergenic | 55.0% | |
| CTGCAGACTCTTGGTCTCTC+TGG | + | chr7_3:59108382-59108401 | Msa1112960:CDS | 55.0% | |
| ! | GGTCTCTCTGGCTTAGGATC+TGG | + | chr7_3:59108394-59108413 | Msa1112960:CDS | 55.0% |
| ! | TCTGGCTTAGGATCTGGAGC+TGG | + | chr7_3:59108400-59108419 | Msa1112960:CDS | 55.0% |
| TCTGGATCACTTGGTCGCAG+AGG | + | chr7_3:59108984-59109003 | Msa1112960:intron | 55.0% | |
| GCAGAACCCTGCAGTGTCAA+GGG | - | chr7_3:59109113-59109132 | None:intergenic | 55.0% | |
| AGCAGAACCCTGCAGTGTCA+AGG | - | chr7_3:59109114-59109133 | None:intergenic | 55.0% | |
| !! | TTCTGGCTTGCGTGATGACG+GGG | + | chr7_3:59109913-59109932 | Msa1112960:CDS | 55.0% |
| ! | TCCTAGCGTTGCCTAGCCTT+TGG | + | chr7_3:59110036-59110055 | Msa1112960:three_prime_UTR | 55.0% |
| ACCAAAGGCTAGGCAACGCT+AGG | - | chr7_3:59110040-59110059 | None:intergenic | 55.0% | |
| CGGAGCATGTCACCGGAGAT+TGG | + | chr7_3:59106086-59106105 | Msa1112960:CDS | 60.0% | |
| ! | TGCCCCCGAGGCACTCTTTA+AGG | - | chr7_3:59106843-59106862 | None:intergenic | 60.0% |
| ACCTGCCATGTCCTCATCCC+AGG | - | chr7_3:59106910-59106929 | None:intergenic | 60.0% | |
| CTGACGCAAGCCCTTCTGAC+CGG | + | chr7_3:59108058-59108077 | Msa1112960:CDS | 60.0% | |
| GCATAGGTGGCCCTTCCTTC+TGG | + | chr7_3:59108337-59108356 | Msa1112960:intron | 60.0% | |
| TAGGTGGCCCTTCCTTCTGG+GGG | + | chr7_3:59108340-59108359 | Msa1112960:intron | 60.0% | |
| GGGGTTAAGATGCCCCCAGA+AGG | - | chr7_3:59108355-59108374 | None:intergenic | 60.0% | |
| !! | GGGGGCATCTTAACCCCAAG+AGG | + | chr7_3:59108358-59108377 | Msa1112960:CDS | 60.0% |
| CCAAGAGTCTGCAGCCCTCT+TGG | - | chr7_3:59108376-59108395 | None:intergenic | 60.0% | |
| CCAAGAGGGCTGCAGACTCT+TGG | + | chr7_3:59108373-59108392 | Msa1112960:CDS | 60.0% | |
| !! | TCTGGCTTGCGTGATGACGG+GGG | + | chr7_3:59109914-59109933 | Msa1112960:CDS | 60.0% |
| CGAGGAGGTGGAGGAGGAGA+CGG | - | chr7_3:59106065-59106084 | None:intergenic | 65.0% | |
| TCCTCGCCGGAGCATGTCAC+CGG | + | chr7_3:59106079-59106098 | Msa1112960:CDS | 65.0% | |
| GCCTGGGATGAGGACATGGC+AGG | + | chr7_3:59106906-59106925 | Msa1112960:intron | 65.0% | |
| GGTGGTCGGCACTCATACCC+AGG | - | chr7_3:59107456-59107475 | None:intergenic | 65.0% | |
| AGGGCTTGCGTCAGCCCTTG+TGG | - | chr7_3:59108052-59108071 | None:intergenic | 65.0% | |
| ACGCAAGCCCTTCTGACCGG+TGG | + | chr7_3:59108061-59108080 | Msa1112960:CDS | 65.0% | |
| GGAGGAGGAGACGGTGGCGA+TGG | - | chr7_3:59106056-59106075 | None:intergenic | 70.0% | |
| GGAGGTGGAGGAGGAGACGG+TGG | - | chr7_3:59106062-59106081 | None:intergenic | 70.0% | |
| CTCCTCCTCCACCTCCTCGC+CGG | + | chr7_3:59106066-59106085 | Msa1112960:CDS | 70.0% | |
| ATGCTCCGGCGAGGAGGTGG+AGG | - | chr7_3:59106074-59106093 | None:intergenic | 70.0% | |
| GACATGCTCCGGCGAGGAGG+TGG | - | chr7_3:59106077-59106096 | None:intergenic | 70.0% | |
| GGTGACATGCTCCGGCGAGG+AGG | - | chr7_3:59106080-59106099 | None:intergenic | 70.0% | |
| TCCGGTGACATGCTCCGGCG+AGG | - | chr7_3:59106083-59106102 | None:intergenic | 70.0% | |
| CTCCGGCGAGGAGGTGGAGG+AGG | - | chr7_3:59106071-59106090 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 59105801 | 59110263 | 59105801 | ID=Msa1112960;Name=Msa1112960 |
| chr7_3 | mRNA | 59105801 | 59110263 | 59105801 | ID=Msa1112960-mRNA-1;Parent=Msa1112960;Name=Msa1112960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=89|1|1|1|1|1|10|272|517 |
| chr7_3 | exon | 59105801 | 59106223 | 59105801 | ID=Msa1112960-mRNA-1:exon:13040;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59107403 | 59107539 | 59107403 | ID=Msa1112960-mRNA-1:exon:13041;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59107637 | 59107810 | 59107637 | ID=Msa1112960-mRNA-1:exon:13042;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59108007 | 59108243 | 59108007 | ID=Msa1112960-mRNA-1:exon:13043;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59108343 | 59108443 | 59108343 | ID=Msa1112960-mRNA-1:exon:13044;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59108529 | 59108601 | 59108529 | ID=Msa1112960-mRNA-1:exon:13045;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59108685 | 59108753 | 59108685 | ID=Msa1112960-mRNA-1:exon:13046;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59109125 | 59109232 | 59109125 | ID=Msa1112960-mRNA-1:exon:13047;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59109522 | 59109647 | 59109522 | ID=Msa1112960-mRNA-1:exon:13048;Parent=Msa1112960-mRNA-1 |
| chr7_3 | exon | 59109797 | 59110263 | 59109797 | ID=Msa1112960-mRNA-1:exon:13049;Parent=Msa1112960-mRNA-1 |
| chr7_3 | five_prime_UTR | 59105801 | 59105889 | 59105801 | ID=Msa1112960-mRNA-1:five_prime_utr;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59105890 | 59106223 | 59105890 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59107403 | 59107539 | 59107403 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59107637 | 59107810 | 59107637 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59108007 | 59108243 | 59108007 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59108343 | 59108443 | 59108343 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59108529 | 59108601 | 59108529 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59108685 | 59108753 | 59108685 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59109125 | 59109232 | 59109125 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59109522 | 59109647 | 59109522 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | CDS | 59109797 | 59109991 | 59109797 | ID=Msa1112960-mRNA-1:cds;Parent=Msa1112960-mRNA-1 |
| chr7_3 | three_prime_UTR | 59109992 | 59110263 | 59109992 | ID=Msa1112960-mRNA-1:three_prime_utr;Parent=Msa1112960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
