AlfalfaGEDB | Msa1067590

M. sativa cultivar zhongmu-4 / Msa1067590

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF00561.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067590	XP_003624080.1	95.164	517	25	0	1	517	1	517	0.0	993

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067590	sp\|P46547\|PIP_AERSO	43.722	446	225	10	64	509	2	421	3.08e-121	365

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067590	G7L6P1	95.164	517	25	0	1	517	1	517	0.0	993

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0403480	Msa1067590	0.815000	1.156875e-51	-8.615850e-47
Msa0576120	Msa1067590	0.804044	2.609748e-49	-8.615850e-47
Msa0637930	Msa1067590	0.800880	1.171120e-48	-8.615850e-47
Msa0828590	Msa1067590	-0.806458	8.146364e-50	-8.615850e-47
Msa0881530	Msa1067590	0.844103	9.299515e-59	-8.615850e-47
Msa0982090	Msa1067590	0.846137	2.623112e-59	-8.615850e-47
Msa1028540	Msa1067590	0.865942	4.093932e-65	-8.615850e-47
Msa1067590	Msa1112960	0.887655	1.178880e-72	-8.615850e-47
Msa1067590	Msa1128280	-0.800629	1.317499e-48	-8.615850e-47
Msa1067590	Msa1364350	0.815369	9.578815e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067590	MtrunA17_Chr7g0248701	95.164	517	25	0	1	517	1	517	0.0	993

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1067590	AT3G61540.1	74.398	457	114	1	61	517	62	515	0.0	723

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Find 140 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCTTCTCAAATAGCT+GGG	0.579714	7_2:+62350513	Msa1067590:CDS
AAAGCGCGAAAAGAGCGACG+AGG	0.776154	7_2:-62346577	None:intergenic
AAAGTTCTTGATCATTTGTT+GGG	0.410247	7_2:+62350593	Msa1067590:CDS
AAATAGCTGGGATCAGGCTA+TGG	0.511594	7_2:+62350525	Msa1067590:CDS
AAATTATGGCAGAGTTACGG+TGG	0.644222	7_2:+62348650	Msa1067590:intron
AACAATGGTGATCAAAATAG+AGG	0.490017	7_2:-62350635	None:intergenic
AACGCTAGGACATAAAACAT+TGG	0.665080	7_2:-62350678	None:intergenic
AACTTCAGTCCTTATTCTAC+TGG	0.423287	7_2:-62349802	None:intergenic
AAGAGCGACGAGGATGAAAT+TGG	0.312770	7_2:-62346567	None:intergenic
AAGAGTCTGCAGCCCTCTTG+GGG	0.573534	7_2:-62349026	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATAGCAACATTATTATGTG+AGG	-	chr7_2:62346508-62346527	None:intergenic	30.0%
GAAACTATGGGACATATAAT+TGG	+	chr7_2:62347313-62347332	Msa1067590:intron	30.0%
CATAGTTAACATTTCCTAAC+AGG	-	chr7_2:62347361-62347380	None:intergenic	30.0%
CTGTTAGGAAATGTTAACTA+TGG	+	chr7_2:62347359-62347378	Msa1067590:intron	30.0%
GTTAGGAAATGTTAACTATG+GGG	+	chr7_2:62347361-62347380	Msa1067590:intron	30.0%
TTAACTATGGGGCATATATA+TGG	+	chr7_2:62347372-62347391	Msa1067590:intron	30.0%
TAACTATGGGGCATATATAT+GGG	+	chr7_2:62347373-62347392	Msa1067590:intron	30.0%
CACTCTTTAAGCACTTTAAA+CGG	+	chr7_2:62347419-62347438	Msa1067590:intron	30.0%
ATGGTATTACTGGTGAAATT+TGG	+	chr7_2:62347606-62347625	Msa1067590:intron	30.0%
TGTTGGAATATCCTATGTTT+CGG	+	chr7_2:62347714-62347733	Msa1067590:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	62346429	62350918	62346429	ID=Msa1067590;Name=Msa1067590
chr7_2	mRNA	62346429	62350918	62346429	ID=Msa1067590-mRNA-1;Parent=Msa1067590;Name=Msa1067590-mRNA-1;_AED=0.09;_eAED=0.09;_QI=88\|1\|1\|1\|1\|1\|10\|272\|517
chr7_2	exon	62346429	62346850	62346429	ID=Msa1067590-mRNA-1:exon:12618;Parent=Msa1067590-mRNA-1
chr7_2	exon	62348047	62348183	62348047	ID=Msa1067590-mRNA-1:exon:12619;Parent=Msa1067590-mRNA-1
chr7_2	exon	62348281	62348454	62348281	ID=Msa1067590-mRNA-1:exon:12620;Parent=Msa1067590-mRNA-1
chr7_2	exon	62348662	62348898	62348662	ID=Msa1067590-mRNA-1:exon:12621;Parent=Msa1067590-mRNA-1
chr7_2	exon	62348998	62349098	62348998	ID=Msa1067590-mRNA-1:exon:12622;Parent=Msa1067590-mRNA-1
chr7_2	exon	62349184	62349256	62349184	ID=Msa1067590-mRNA-1:exon:12623;Parent=Msa1067590-mRNA-1
chr7_2	exon	62349340	62349408	62349340	ID=Msa1067590-mRNA-1:exon:12624;Parent=Msa1067590-mRNA-1
chr7_2	exon	62349780	62349887	62349780	ID=Msa1067590-mRNA-1:exon:12625;Parent=Msa1067590-mRNA-1
chr7_2	exon	62350177	62350302	62350177	ID=Msa1067590-mRNA-1:exon:12626;Parent=Msa1067590-mRNA-1
chr7_2	exon	62350452	62350918	62350452	ID=Msa1067590-mRNA-1:exon:12627;Parent=Msa1067590-mRNA-1
chr7_2	five_prime_UTR	62346429	62346516	62346429	ID=Msa1067590-mRNA-1:five_prime_utr;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62346517	62346850	62346517	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62348047	62348183	62348047	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62348281	62348454	62348281	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62348662	62348898	62348662	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62348998	62349098	62348998	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62349184	62349256	62349184	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62349340	62349408	62349340	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62349780	62349887	62349780	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62350177	62350302	62350177	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	CDS	62350452	62350646	62350452	ID=Msa1067590-mRNA-1:cds;Parent=Msa1067590-mRNA-1
chr7_2	three_prime_UTR	62350647	62350918	62350647	ID=Msa1067590-mRNA-1:three_prime_utr;Parent=Msa1067590-mRNA-1

Gene Sequence

>Msa1067590

ATGTTGCTATCACACGCGCCACCACTATCTTTTCTTCTCACCACATTGCTCCAATTTCATCCTCGTCGCTCTTTTCGCGCTTTATCATCAATCCCTCTTTTCTCAATACCCCTCAGACTCTCCCTTTCTCACCGAAGCTCACGCATTCCAATGAACGGACTTACCATCGCCACCGTCTCCTCCTCCACCTCCTCGCCGGAGCATGTCACCGGAGATTGGTTCTCCGTACCTTCACTCCGTCTTCGTGATCACAGATTCACTGTCCCTCTCGATTACTCTCAAGGCCTACAGTCTTCGACTAAGATCACGGTTTTCGCTCGTGAAGTTGTTGCAGTTGGAAAAGAAGAGAAAACATTGCCATATTTACTATTTTTGCAAGGTGGTCCTGGGTTTGAGTGCCGACCACCAACTGAATCTAGTGGATGGATTCAAAAAGTTACTGAACAGTTTCGTCTCATCTTAATGGACCAGCGAGGAACAGGCTTATCAACTCCTTTGTCTGTGTCATCAATGTCACAATTCAAGTCTGGAGAGGACTTAGCTGACTTCTTAAAATATTTTCGAGCTGATAGTATAGTAAATGATGCAGAGTTTATTCGAGTTCGCCTTGTTCCAAATGCTGGACCTTGGACAATTTTGGGGCAGAGTTACGGTGGATTTTGCGCAGTCACATATTTGAGTTTTGCACCACAAGGGCTGACGCAAGCCCTTCTGACCGGTGGAATTCCTCCAATAGGACATGGATGCACTGCAGATTCAGTATACAGAGCATGCTTTGAGCAAATTATGCATCAAAATGAGAAGTACTACAAAAGATACCCTCAGGATATCAAAATTGTTCAAGAACTTGTTAATTATTTAGCTGAACAAGAAGGAGGAGGGGTGGCCCTTCCTTCTGGGGGCATCTTAACCCCAAGAGGGCTGCAGACTCTTGGTCTCTCTGGCTTAGGATCTGGAGCTGGTTTCGAGAGCATGCACTATATGTTTGAGAGAGTGTGGGATCCTACTTTAGTTCCGGGATCACCTAAGAGAATAAGTCACTACTTCCTAAATGCTTTTGAAAGCTCGATATCTGTTGATACTAATCCACTGTATGCTCTTCTACATGAATCCATCTATTGTCAGGGTTCTGCTAGTAGATGGTCTGCCAGTAGAATAAGGACTGAAGTTGAAGACAAATTTGATGCAATTAAAGCTGCTAAAGAAGGACTACCTATACTTTTTACAGGAGAGATGATTTTCCCATGGATGTTTGATGAGATTCATGCCTTGAAACCATTCAAAGATGTAGCTCATATACTGTCCGAGAAGAAGGATTGGTCCCAATTATATGACATTCAGGCATTGAATAACAACAAGGTACCTGTTGCAGCTGCCGTTTATTATGAAGACATGTATGTGAATTTTAAGCTGTCGAAGGAAACAGCTTCTCAAATAGCTGGGATCAGGCTATGGATAACTAATGAGTTCATGCATTCTGGCTTGCGTGATGACGGGGGCAAAGTTCTTGATCATTTGTTGGGAATGTTAAACGGAAAGAAACCTCTATTTTGA

Protein sequence

>Msa1067590

MLLSHAPPLSFLLTTLLQFHPRRSFRALSSIPLFSIPLRLSLSHRSSRIPMNGLTIATVSSSTSSPEHVTGDWFSVPSLRLRDHRFTVPLDYSQGLQSSTKITVFAREVVAVGKEEKTLPYLLFLQGGPGFECRPPTESSGWIQKVTEQFRLILMDQRGTGLSTPLSVSSMSQFKSGEDLADFLKYFRADSIVNDAEFIRVRLVPNAGPWTILGQSYGGFCAVTYLSFAPQGLTQALLTGGIPPIGHGCTADSVYRACFEQIMHQNEKYYKRYPQDIKIVQELVNYLAEQEGGGVALPSGGILTPRGLQTLGLSGLGSGAGFESMHYMFERVWDPTLVPGSPKRISHYFLNAFESSISVDTNPLYALLHESIYCQGSASRWSASRIRTEVEDKFDAIKAAKEGLPILFTGEMIFPWMFDEIHALKPFKDVAHILSEKKDWSQLYDIQALNNNKVPVAAAVYYEDMYVNFKLSKETASQIAGIRLWITNEFMHSGLRDDGGKVLDHLLGMLNGKKPLF*