AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1113950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113950 MtrunA17_Chr7g0256551 99.163 239 1 1 1 238 1 239 9.24e-176 482
Msa1113950 MtrunA17_Chr8g0352871 74.359 156 39 1 1 156 1 155 4.26e-81 240
Msa1113950 MtrunA17_Chr3g0082861 69.136 162 48 1 7 166 2 163 2.28e-77 230
Msa1113950 MtrunA17_Chr5g0414931 58.642 162 61 3 3 163 9 165 2.95e-60 189
Msa1113950 MtrunA17_Chr4g0059571 55.556 162 63 2 4 165 21 173 1.87e-56 179
Msa1113950 MtrunA17_Chr1g0170741 63.768 138 44 2 8 145 7 138 8.72e-56 177
Msa1113950 MtrunA17_Chr3g0118211 54.140 157 63 2 4 160 18 165 9.18e-55 174
Msa1113950 MtrunA17_Chr3g0124861 58.000 150 51 4 9 148 22 169 6.18e-53 171
Msa1113950 MtrunA17_Chr3g0128691 59.091 132 47 2 10 141 19 143 7.60e-50 160
Msa1113950 MtrunA17_Chr4g0021731 69.892 93 19 1 3 95 5 88 9.78e-41 135
Msa1113950 MtrunA17_Chr8g0345901 32.022 178 102 2 11 187 38 197 3.94e-19 85.9
Msa1113950 MtrunA17_Chr4g0030271 34.307 137 72 3 11 147 91 209 3.12e-18 83.6
Msa1113950 MtrunA17_Chr3g0127941 28.834 163 89 4 9 162 56 200 3.94e-16 77.0
Msa1113950 MtrunA17_Chr1g0181811 30.657 137 77 2 11 147 87 205 2.43e-15 74.7
Msa1113950 MtrunA17_Chr7g0276361 29.197 137 79 1 11 147 16 134 1.19e-14 72.8
Msa1113950 MtrunA17_Chr2g0304841 31.214 173 88 5 11 173 24 175 3.05e-13 68.6
Msa1113950 MtrunA17_Chr1g0161431 29.333 150 84 3 7 156 13 140 3.37e-13 68.6
Msa1113950 MtrunA17_Chr3g0123131 24.870 193 123 3 11 202 19 190 7.74e-13 67.4
Msa1113950 MtrunA17_Chr7g0275891 33.813 139 72 4 11 149 11 129 1.33e-12 66.2
Msa1113950 MtrunA17_Chr1g0149851 31.655 139 74 3 11 149 11 128 2.27e-12 65.9
Msa1113950 MtrunA17_Chr1g0149841 30.935 139 75 3 11 149 11 128 2.50e-12 65.9
Msa1113950 MtrunA17_Chr4g0074411 29.932 147 80 3 11 155 24 149 5.93e-12 64.7
Msa1113950 MtrunA17_Chr8g0376881 26.174 149 89 2 4 152 24 151 7.37e-12 64.3
Msa1113950 MtrunA17_Chr7g0275401 29.078 141 79 2 9 149 9 128 9.73e-12 63.5
Msa1113950 MtrunA17_Chr4g0061021 25.676 148 92 1 2 149 26 155 1.53e-11 63.5
Msa1113950 MtrunA17_Chr3g0091641 26.174 149 90 3 2 149 17 146 1.55e-11 63.5
Msa1113950 MtrunA17_Chr3g0137101 29.730 148 83 3 11 158 14 140 2.04e-11 63.2
Msa1113950 MtrunA17_Chr8g0350761 25.664 226 142 6 11 232 23 226 2.38e-11 62.8
Msa1113950 MtrunA17_Chr4g0074401 30.612 147 79 3 11 155 23 148 2.97e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1113950 AT3G57040.2 64.609 243 72 6 1 238 1 234 3.48e-100 291
Msa1113950 AT3G57040.1 64.609 243 72 6 1 238 1 234 3.48e-100 291
Msa1113950 AT2G41310.1 60.084 238 82 5 1 238 1 225 4.57e-91 268
Msa1113950 AT1G59940.1 59.286 140 48 2 8 147 32 162 6.46e-56 178
Msa1113950 AT1G10470.3 58.389 149 52 3 8 155 19 158 9.09e-56 179
Msa1113950 AT1G10470.1 58.389 149 52 3 8 155 33 172 1.23e-55 179
Msa1113950 AT3G48100.1 56.849 146 55 2 3 148 19 156 3.06e-55 175
Msa1113950 AT1G59940.2 59.286 140 48 2 8 147 124 254 5.45e-54 176
Msa1113950 AT3G56380.1 55.634 142 55 1 4 145 15 148 9.26e-54 170
Msa1113950 AT1G19050.1 59.259 135 46 1 8 142 23 148 3.39e-53 171
Msa1113950 AT1G74890.1 60.741 135 44 2 8 142 17 142 3.78e-53 171
Msa1113950 AT5G62920.1 57.857 140 50 1 9 148 25 155 1.03e-52 169
Msa1113950 AT3G56380.2 55.245 143 55 2 4 145 15 149 5.77e-52 166
Msa1113950 AT2G40670.1 53.793 145 59 2 6 149 26 163 8.33e-52 166
Msa1113950 AT2G40670.2 53.425 146 59 3 6 149 26 164 4.44e-50 161
Msa1113950 AT2G07440.1 48.252 143 59 5 96 238 9 136 3.27e-32 115
Msa1113950 AT1G10470.2 59.677 62 24 1 95 155 35 96 1.21e-17 78.2
Msa1113950 AT5G24470.1 30.216 139 79 2 9 147 50 170 3.75e-15 74.7
Msa1113950 AT5G02810.1 32.117 137 75 2 11 147 80 198 5.54e-15 74.3
Msa1113950 AT5G60100.7 32.117 137 75 2 11 147 66 184 3.21e-14 71.6
Msa1113950 AT5G60100.6 32.117 137 75 2 11 147 66 184 3.21e-14 71.6
Msa1113950 AT5G60100.4 32.117 137 75 2 11 147 66 184 3.21e-14 71.6
Msa1113950 AT2G46790.3 28.276 145 85 3 9 152 37 163 3.59e-14 71.6
Msa1113950 AT5G60100.5 32.117 137 75 2 11 147 66 184 3.74e-14 71.6
Msa1113950 AT5G60100.3 32.117 137 75 2 11 147 66 184 3.74e-14 71.6
Msa1113950 AT5G60100.1 32.117 137 75 2 11 147 66 184 3.74e-14 71.6
Msa1113950 AT2G46790.1 28.276 145 85 3 9 152 37 163 3.80e-14 71.6
Msa1113950 AT5G60100.2 32.117 137 75 2 11 147 66 184 4.14e-14 71.6
Msa1113950 AT2G25180.1 31.429 140 75 2 11 150 19 137 7.06e-14 70.9
Msa1113950 AT1G67710.1 29.167 144 81 2 9 152 11 133 1.95e-13 69.7
Msa1113950 AT5G07210.2 32.090 134 69 3 8 141 15 126 3.87e-13 68.9
Msa1113950 AT4G31920.1 29.927 137 75 2 11 147 19 134 3.85e-12 65.9
Msa1113950 AT1G49190.2 29.730 148 79 3 7 150 28 154 5.07e-12 65.5
Msa1113950 AT1G49190.1 29.730 148 79 3 7 150 28 154 1.48e-11 63.9
Msa1113950 AT5G61380.1 25.000 148 93 1 2 149 12 141 3.38e-11 63.2
Msa1113950 AT2G27070.1 29.798 198 98 7 8 190 15 186 6.26e-11 62.0

Find 67 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCCTTAGTTGGAGAAAA+TGG 0.153365 7_3:-60555029 Msa1113950:exon
TTTGGAAAATTTGCAAGATT+TGG 0.165434 7_3:-60555277 Msa1113950:five_prime_UTR
TTTAAATCTGATAGCCTTAC+AGG 0.185020 7_3:+60553379 None:intergenic
GGAAATACAGATGGTGTATT+TGG 0.194626 7_3:+60554565 None:intergenic
GCTTTGTGGGATGTGGATTT+TGG 0.218342 7_3:-60555233 Msa1113950:five_prime_UTR
ACAATGAAGCACCGAGATTT+TGG 0.221714 7_3:+60552740 None:intergenic
TTGATTTGGATCTTTCAATT+TGG 0.240297 7_3:+60553330 None:intergenic
AAGGACTAAAAGAAGGTAAA+TGG 0.279848 7_3:+60555044 None:intergenic
ACTCTTTCTCTTGTTATTGT+TGG 0.284458 7_3:+60553150 None:intergenic
TTGGAAAATTTGCAAGATTT+GGG 0.299967 7_3:-60555276 Msa1113950:five_prime_UTR
TATTTCCAGGAAATGTTTAC+AGG 0.304991 7_3:+60552923 None:intergenic
TGTTCCCTGTAAACATTTCC+TGG 0.307533 7_3:-60552928 Msa1113950:three_prime_UTR
CATGTAATTCAAGATCAATT+TGG 0.308343 7_3:-60555295 Msa1113950:five_prime_UTR
AGAAGCAAAGAAATGGAAAA+TGG 0.314441 7_3:+60555086 None:intergenic
GCAAGATTTGGGATGAAATC+TGG 0.334593 7_3:-60555265 Msa1113950:five_prime_UTR
AGAGTCACAGTTTCATGTTT+TGG 0.343063 7_3:-60554996 Msa1113950:CDS
GCAGTTACTACAGTTGATTC+TGG 0.344676 7_3:-60554637 Msa1113950:intron
ACTTGGGTGTTGGTTTATAT+AGG 0.347253 7_3:-60552975 Msa1113950:three_prime_UTR
AATTGGAAGGGGATATTTCC+AGG 0.353288 7_3:+60552910 None:intergenic
GAAATACAGATGGTGTATTT+GGG 0.355026 7_3:+60554566 None:intergenic
TATTATATATATAAATAAAA+AGG 0.361192 7_3:-60555425 Msa1113950:five_prime_UTR
ATGTGCCTTCAAGAATTAAT+AGG 0.368999 7_3:-60553544 Msa1113950:intron
AACTATACCTGATGATTGTT+AGG 0.391930 7_3:+60554544 None:intergenic
CAAATTGATCTTGAATTACA+TGG 0.393419 7_3:+60555296 None:intergenic
TACTGTATGCCTGGCATGAC+AGG 0.404554 7_3:-60554356 Msa1113950:CDS
TATTACCTATTAATTCTTGA+AGG 0.405802 7_3:+60553539 None:intergenic
CTGGTCGGATCTTGCTTTGT+GGG 0.415540 7_3:-60555246 Msa1113950:five_prime_UTR
GTTGTAGTGATTGTTGCTGT+TGG 0.418854 7_3:+60553176 None:intergenic
TCTGGTCGGATCTTGCTTTG+TGG 0.421782 7_3:-60555247 Msa1113950:five_prime_UTR
TTATGGGAGGAATATGAGAT+TGG 0.426769 7_3:+60555180 None:intergenic
AAGGGAAAGAAGCAAAGAAA+TGG 0.429537 7_3:+60555079 None:intergenic
TTGGTTTATATAGGCTCTAT+AGG 0.429787 7_3:-60552966 Msa1113950:three_prime_UTR
AGTCCTTAGTTGGAGAAAAT+GGG 0.430778 7_3:-60555028 Msa1113950:exon
TTAAATATTAACTTGGGTGT+TGG 0.433869 7_3:-60552985 Msa1113950:three_prime_UTR
GGATCTTGCTTTGTGGGATG+TGG 0.439185 7_3:-60555240 Msa1113950:five_prime_UTR
ACCCTTGAGGAAGGAAAAGA+TGG 0.441976 7_3:+60555142 None:intergenic
CTCAAAACATCTTCATATCA+AGG 0.455916 7_3:-60554929 Msa1113950:intron
TTGTATGATGATAAATCATT+TGG 0.463555 7_3:-60553063 Msa1113950:exon
GTGGCTATGCCACTGTATCT+TGG 0.467016 7_3:+60553088 None:intergenic
TGTATTTCCTAACAATCATC+AGG 0.478134 7_3:-60554551 Msa1113950:intron
AAATCATAGCCTGTCATGCC+AGG 0.488050 7_3:+60554347 None:intergenic
TATCAAATGTAACAGATGCT+TGG 0.497655 7_3:-60553431 Msa1113950:intron
TACAGTTGATTCTGGTAGCA+AGG 0.501635 7_3:-60554629 Msa1113950:CDS
TTGATGACAGCATCATAGAT+AGG 0.505605 7_3:-60554970 Msa1113950:CDS
TCATATGAAACAAAATTGGA+AGG 0.508230 7_3:+60552897 None:intergenic
ATAACAGATTACTGTATGCC+TGG 0.512220 7_3:-60554365 Msa1113950:CDS
CTTCTCTTGACCCTTGAGGA+AGG 0.517106 7_3:+60555133 None:intergenic
CATATGAAACAAAATTGGAA+GGG 0.522607 7_3:+60552898 None:intergenic
CAAATGTAACAGATGCTTGG+AGG 0.523574 7_3:-60553428 Msa1113950:intron
TACAGATGGTGTATTTGGGT+TGG 0.527443 7_3:+60554570 None:intergenic
TGATTTGCTTAAGAAAATCA+AGG 0.528385 7_3:-60554330 Msa1113950:intron
TCCAACTAAGGACTAAAAGA+AGG 0.538160 7_3:+60555037 None:intergenic
ATATGAAACAAAATTGGAAG+GGG 0.538359 7_3:+60552899 None:intergenic
TGTTCTTCTCTTGACCCTTG+AGG 0.542370 7_3:+60555129 None:intergenic
TCAGATGACATAATCACCAC+TGG 0.584254 7_3:+60553569 None:intergenic
TGTAACAGATGCTTGGAGGA+AGG 0.588489 7_3:-60553424 Msa1113950:intron
CCCTTGAGGAAGGAAAAGAT+GGG 0.591099 7_3:+60555143 None:intergenic
ATTTCCAGGAAATGTTTACA+GGG 0.615752 7_3:+60552924 None:intergenic
TTAGTTGGAGAAAATGGGAA+TGG 0.618622 7_3:-60555023 Msa1113950:exon
TAGATAGGAAGCTTATTGAG+AGG 0.630074 7_3:-60554955 Msa1113950:CDS
AAATTGAATGTGTAAGAGCA+TGG 0.635971 7_3:-60552860 Msa1113950:three_prime_UTR
CAATAACAAGAGAAAGAGTG+TGG 0.644460 7_3:-60553146 Msa1113950:CDS
GATTTGGGATGAAATCTGGT+CGG 0.673753 7_3:-60555261 Msa1113950:five_prime_UTR
ATCATTGAGAAACATACCAG+TGG 0.696105 7_3:-60553585 Msa1113950:CDS
GATTTATCATCATACAACAG+TGG 0.696351 7_3:+60553069 None:intergenic
AGAACAAGACCAAGATACAG+TGG 0.701894 7_3:-60553097 Msa1113950:CDS
TGATTGTTAGGAAATACAGA+TGG 0.757940 7_3:+60554556 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATATATATAAATAAAA+AGG - chr7_3:60552783-60552802 Msa1113950:three_prime_UTR 0.0%
!!! TATGTTAATGTTTTTCTTTT+TGG - chr7_3:60553446-60553465 Msa1113950:intron 15.0%
!!! AGAACAAAATAATTACTTTT+TGG - chr7_3:60554128-60554147 Msa1113950:intron 15.0%
!!! ATTTTCATATGAAACAAAAT+TGG + chr7_3:60555318-60555337 None:intergenic 15.0%
!! ATCCTAAAAAAATATTCACT+AGG - chr7_3:60552820-60552839 Msa1113950:three_prime_UTR 20.0%
!!! ATCCTAGTGAATATTTTTTT+AGG + chr7_3:60552825-60552844 None:intergenic 20.0%
!!! GGTTTATTTTTTGTGTTTAT+GGG + chr7_3:60553047-60553066 None:intergenic 20.0%
!!! AAATGGATTTTGAAAATGAA+GGG + chr7_3:60553150-60553169 None:intergenic 20.0%
!!! TAAATGGATTTTGAAAATGA+AGG + chr7_3:60553151-60553170 None:intergenic 20.0%
!! ACAACATTATCATAGTATAA+TGG + chr7_3:60553377-60553396 None:intergenic 20.0%
!! TTCAACTTTATAATGTTAGA+TGG - chr7_3:60553754-60553773 Msa1113950:intron 20.0%
!! TTAAAGTGGACAATAAATAT+TGG + chr7_3:60553944-60553963 None:intergenic 20.0%
!! TTGAGAAATAGTTATTAAAG+TGG + chr7_3:60553958-60553977 None:intergenic 20.0%
!!! TATTTTGTTCTCAAACAAAA+GGG + chr7_3:60554119-60554138 None:intergenic 20.0%
!!! TTATTTTGTTCTCAAACAAA+AGG + chr7_3:60554120-60554139 None:intergenic 20.0%
!! CATTTAAAGACATATTGTTT+AGG + chr7_3:60554260-60554279 None:intergenic 20.0%
!! CTAAACAATATGTCTTTAAA+TGG - chr7_3:60554258-60554277 Msa1113950:intron 20.0%
!! TTGACAACATAAAATTTAGA+AGG - chr7_3:60554285-60554304 Msa1113950:intron 20.0%
!! TAGAAGGAAATAAAAAACTA+TGG - chr7_3:60554301-60554320 Msa1113950:intron 20.0%
!!! AAAAGATTTTGTTTCCAAAA+AGG - chr7_3:60554460-60554479 Msa1113950:intron 20.0%
!!! AAAGATTTTGTTTCCAAAAA+GGG - chr7_3:60554461-60554480 Msa1113950:intron 20.0%
!! TATTACCTATTAATTCTTGA+AGG + chr7_3:60554672-60554691 None:intergenic 20.0%
!!! TTATTTCTATTTTTCCACTT+TGG - chr7_3:60554716-60554735 Msa1113950:intron 20.0%
!! TATAATTAAAATGACCAAAG+TGG + chr7_3:60554733-60554752 None:intergenic 20.0%
!! TTGTATGATGATAAATCATT+TGG - chr7_3:60555145-60555164 Msa1113950:five_prime_UTR 20.0%
! CAAATTGATCTTGAATTACA+TGG + chr7_3:60552915-60552934 None:intergenic 25.0%
! CATGTAATTCAAGATCAATT+TGG - chr7_3:60552913-60552932 Msa1113950:three_prime_UTR 25.0%
! TTTGGAAAATTTGCAAGATT+TGG - chr7_3:60552931-60552950 Msa1113950:three_prime_UTR 25.0%
! TTGGAAAATTTGCAAGATTT+GGG - chr7_3:60552932-60552951 Msa1113950:three_prime_UTR 25.0%
!!! TTATTTTTTGTGTTTATGGG+AGG + chr7_3:60553044-60553063 None:intergenic 25.0%
!!! GGGTTTATTTTTTGTGTTTA+TGG + chr7_3:60553048-60553067 None:intergenic 25.0%
! TCATCAGATTATGCTATATT+TGG + chr7_3:60553318-60553337 None:intergenic 25.0%
!!! CATAATCTGATGAACTTTTT+TGG - chr7_3:60553325-60553344 Msa1113950:CDS 25.0%
!! ATGGATTATGTGTTTAAGAA+AGG + chr7_3:60553358-60553377 None:intergenic 25.0%
!!! CACCATGTTAATGTTTTTTT+TGG - chr7_3:60553413-60553432 Msa1113950:CDS 25.0%
! GTCCAAAAAAAACATTAACA+TGG + chr7_3:60553418-60553437 None:intergenic 25.0%
! TAACAGAATGAATGAATGAA+TGG - chr7_3:60553529-60553548 Msa1113950:intron 25.0%
!!! TAATGTTAGATGGTTTTTTC+TGG - chr7_3:60553764-60553783 Msa1113950:intron 25.0%
! CTATAAAACACAAAAATCCA+AGG + chr7_3:60553802-60553821 None:intergenic 25.0%
!! CTTGGATTTTTGTGTTTTAT+AGG - chr7_3:60553800-60553819 Msa1113950:intron 25.0%
!! TTTTTGTGTTTTATAGGAAG+TGG - chr7_3:60553806-60553825 Msa1113950:intron 25.0%
!!! TGATTTGCTTAAGAAAATCA+AGG - chr7_3:60553878-60553897 Msa1113950:intron 25.0%
! GTTAAAAGATTATATGAGTC+AGG + chr7_3:60553922-60553941 None:intergenic 25.0%
! ACAACATCATTAGATTCAAA+TGG - chr7_3:60553978-60553997 Msa1113950:intron 25.0%
! TTGATATAAGTCAAATCGAT+CGG - chr7_3:60554011-60554030 Msa1113950:intron 25.0%
! ACATGATCAATAATTGTTTC+AGG + chr7_3:60554059-60554078 None:intergenic 25.0%
!! TTTTTACTAGACTTAATTCC+CGG + chr7_3:60554205-60554224 None:intergenic 25.0%
! ACTATGGATTCATTCTAATT+TGG - chr7_3:60554317-60554336 Msa1113950:intron 25.0%
!!! TATTGAACCTGATTTGTTTT+GGG + chr7_3:60554433-60554452 None:intergenic 25.0%
!!! TTGATTTGGATCTTTCAATT+TGG + chr7_3:60554881-60554900 None:intergenic 25.0%
!!! TTTTGTTCTGTTTCTTGATT+TGG + chr7_3:60554895-60554914 None:intergenic 25.0%
!! TTAAATATTAACTTGGGTGT+TGG - chr7_3:60555223-60555242 Msa1113950:five_prime_UTR 25.0%
! ATATGAAACAAAATTGGAAG+GGG + chr7_3:60555312-60555331 None:intergenic 25.0%
! CATATGAAACAAAATTGGAA+GGG + chr7_3:60555313-60555332 None:intergenic 25.0%
! TCATATGAAACAAAATTGGA+AGG + chr7_3:60555314-60555333 None:intergenic 25.0%
AGAAGCAAAGAAATGGAAAA+TGG + chr7_3:60553125-60553144 None:intergenic 30.0%
AAGGACTAAAAGAAGGTAAA+TGG + chr7_3:60553167-60553186 None:intergenic 30.0%
CTCAAAACATCTTCATATCA+AGG - chr7_3:60553279-60553298 Msa1113950:CDS 30.0%
! TCATATCAAGGTAACTTTTG+AGG - chr7_3:60553291-60553310 Msa1113950:CDS 30.0%
! CATATCAAGGTAACTTTTGA+GGG - chr7_3:60553292-60553311 Msa1113950:CDS 30.0%
!!! TGGACTTTTTGTTTTCTCAA+TGG - chr7_3:60553549-60553568 Msa1113950:CDS 30.0%
GAAATACAGATGGTGTATTT+GGG + chr7_3:60553645-60553664 None:intergenic 30.0%
TGATTGTTAGGAAATACAGA+TGG + chr7_3:60553655-60553674 None:intergenic 30.0%
TGTATTTCCTAACAATCATC+AGG - chr7_3:60553657-60553676 Msa1113950:intron 30.0%
AACTATACCTGATGATTGTT+AGG + chr7_3:60553667-60553686 None:intergenic 30.0%
TTGAAAAAGTTACTGCATCA+AGG + chr7_3:60553739-60553758 None:intergenic 30.0%
AAGAAAATCAAGGTAAGCTT+TGG - chr7_3:60553888-60553907 Msa1113950:intron 30.0%
AAGATTATATGAGTCAGGAA+TGG + chr7_3:60553917-60553936 None:intergenic 30.0%
AATCAAAATCGAATTCTGGT+TGG + chr7_3:60554234-60554253 None:intergenic 30.0%
GAGAAATCAAAATCGAATTC+TGG + chr7_3:60554238-60554257 None:intergenic 30.0%
!!! CTATTGAACCTGATTTGTTT+TGG + chr7_3:60554434-60554453 None:intergenic 30.0%
!! TTACAAAAGTATGCCCTTTT+TGG + chr7_3:60554477-60554496 None:intergenic 30.0%
GAGAGAATCTTATAAGTCTT+TGG + chr7_3:60554584-60554603 None:intergenic 30.0%
AAGATTCTCTCTGATATTAC+AGG - chr7_3:60554593-60554612 Msa1113950:CDS 30.0%
ATGTGCCTTCAAGAATTAAT+AGG - chr7_3:60554664-60554683 Msa1113950:intron 30.0%
TATCAAATGTAACAGATGCT+TGG - chr7_3:60554777-60554796 Msa1113950:intron 30.0%
! AATTTTTCTTGAAGCCTGTA+AGG - chr7_3:60554815-60554834 Msa1113950:intron 30.0%
! TTTAAATCTGATAGCCTTAC+AGG + chr7_3:60554832-60554851 None:intergenic 30.0%
!!! AATTTGGTTTTCTTCATGTG+AGG + chr7_3:60554865-60554884 None:intergenic 30.0%
!! ACTCTTTCTCTTGTTATTGT+TGG + chr7_3:60555061-60555080 None:intergenic 30.0%
GATTTATCATCATACAACAG+TGG + chr7_3:60555142-60555161 None:intergenic 30.0%
TTGGTTTATATAGGCTCTAT+AGG - chr7_3:60555242-60555261 Msa1113950:five_prime_UTR 30.0%
ATTTCCAGGAAATGTTTACA+GGG + chr7_3:60555287-60555306 None:intergenic 30.0%
TATTTCCAGGAAATGTTTAC+AGG + chr7_3:60555288-60555307 None:intergenic 30.0%
AAATTGAATGTGTAAGAGCA+TGG - chr7_3:60555348-60555367 Msa1113950:five_prime_UTR 30.0%
TTATGGGAGGAATATGAGAT+TGG + chr7_3:60553031-60553050 None:intergenic 35.0%
AAGGGAAAGAAGCAAAGAAA+TGG + chr7_3:60553132-60553151 None:intergenic 35.0%
! ACCTTCTTTTAGTCCTTAGT+TGG - chr7_3:60553170-60553189 Msa1113950:CDS 35.0%
TCCAACTAAGGACTAAAAGA+AGG + chr7_3:60553174-60553193 None:intergenic 35.0%
TAGTCCTTAGTTGGAGAAAA+TGG - chr7_3:60553179-60553198 Msa1113950:CDS 35.0%
AGTCCTTAGTTGGAGAAAAT+GGG - chr7_3:60553180-60553199 Msa1113950:CDS 35.0%
! ATTCCCATTTTCTCCAACTA+AGG + chr7_3:60553186-60553205 None:intergenic 35.0%
TTAGTTGGAGAAAATGGGAA+TGG - chr7_3:60553185-60553204 Msa1113950:CDS 35.0%
! AGAGTCACAGTTTCATGTTT+TGG - chr7_3:60553212-60553231 Msa1113950:CDS 35.0%
! TTGATGACAGCATCATAGAT+AGG - chr7_3:60553238-60553257 Msa1113950:CDS 35.0%
TAGATAGGAAGCTTATTGAG+AGG - chr7_3:60553253-60553272 Msa1113950:CDS 35.0%
!!! TAGCAAGGCTTTAGAGTTTT+TGG - chr7_3:60553594-60553613 Msa1113950:CDS 35.0%
!!! AGCAAGGCTTTAGAGTTTTT+GGG - chr7_3:60553595-60553614 Msa1113950:CDS 35.0%
GGAAATACAGATGGTGTATT+TGG + chr7_3:60553646-60553665 None:intergenic 35.0%
!! TCTGGAATTCTGAAATTCCT+TGG - chr7_3:60553782-60553801 Msa1113950:intron 35.0%
! TTGTGTTTTATAGGAAGTGG+AGG - chr7_3:60553809-60553828 Msa1113950:intron 35.0%
ATAACAGATTACTGTATGCC+TGG - chr7_3:60553843-60553862 Msa1113950:intron 35.0%
!! GGACTTGCTAATATGAAGTA+CGG + chr7_3:60554098-60554117 None:intergenic 35.0%
!!! TACTTTTTGGTTTAGCCATC+CGG - chr7_3:60554141-60554160 Msa1113950:intron 35.0%
ATTGCTGAAAGATGTCAACT+TGG - chr7_3:60554349-60554368 Msa1113950:CDS 35.0%
!! TGGAAAACTGAAAAGCATTC+AGG + chr7_3:60554410-60554429 None:intergenic 35.0%
! TTTTCCACCCAAAACAAATC+AGG - chr7_3:60554423-60554442 Msa1113950:intron 35.0%
! TCTTATAAGTCTTTGGTTCC+AGG + chr7_3:60554577-60554596 None:intergenic 35.0%
ATCATTGAGAAACATACCAG+TGG - chr7_3:60554623-60554642 Msa1113950:CDS 35.0%
CAATAACAAGAGAAAGAGTG+TGG - chr7_3:60555062-60555081 Msa1113950:five_prime_UTR 35.0%
!! ACTTGGGTGTTGGTTTATAT+AGG - chr7_3:60555233-60555252 Msa1113950:five_prime_UTR 35.0%
! TGTAGCTTTTGCCAAAATCT+CGG - chr7_3:60555457-60555476 Msa1113950:five_prime_UTR 35.0%
! GCAAGATTTGGGATGAAATC+TGG - chr7_3:60552943-60552962 Msa1113950:three_prime_UTR 40.0%
! GATTTGGGATGAAATCTGGT+CGG - chr7_3:60552947-60552966 Msa1113950:three_prime_UTR 40.0%
! GCAGTTACTACAGTTGATTC+TGG - chr7_3:60553571-60553590 Msa1113950:CDS 40.0%
! TACAGTTGATTCTGGTAGCA+AGG - chr7_3:60553579-60553598 Msa1113950:CDS 40.0%
TACAGATGGTGTATTTGGGT+TGG + chr7_3:60553641-60553660 None:intergenic 40.0%
TTTCAGGCATAGACCAAACT+CGG + chr7_3:60554043-60554062 None:intergenic 40.0%
!! TTTAGCCATCCGGTTTTTAG+AGG - chr7_3:60554151-60554170 Msa1113950:intron 40.0%
! GACTCCTTTCCTCTAAAAAC+CGG + chr7_3:60554163-60554182 None:intergenic 40.0%
GGAAAGGAGTCTTTACAATC+CGG - chr7_3:60554172-60554191 Msa1113950:intron 40.0%
AGTCTTTACAATCCGGAGTT+CGG - chr7_3:60554179-60554198 Msa1113950:intron 40.0%
GCATTCAGGTGAATTATTGC+AGG + chr7_3:60554396-60554415 None:intergenic 40.0%
!!! TGAACCTGATTTGTTTTGGG+TGG + chr7_3:60554430-60554449 None:intergenic 40.0%
TGTGCAACACTTATTCAACC+TGG - chr7_3:60554556-60554575 Msa1113950:CDS 40.0%
TCAGATGACATAATCACCAC+TGG + chr7_3:60554642-60554661 None:intergenic 40.0%
CAAATGTAACAGATGCTTGG+AGG - chr7_3:60554780-60554799 Msa1113950:intron 40.0%
GTTGTAGTGATTGTTGCTGT+TGG + chr7_3:60555035-60555054 None:intergenic 40.0%
AGAACAAGACCAAGATACAG+TGG - chr7_3:60555111-60555130 Msa1113950:five_prime_UTR 40.0%
TGTTCCCTGTAAACATTTCC+TGG - chr7_3:60555280-60555299 Msa1113950:five_prime_UTR 40.0%
AATTGGAAGGGGATATTTCC+AGG + chr7_3:60555301-60555320 None:intergenic 40.0%
! GCTTTGTGGGATGTGGATTT+TGG - chr7_3:60552975-60552994 Msa1113950:three_prime_UTR 45.0%
! TTGTGGGATGTGGATTTTGG+TGG - chr7_3:60552978-60552997 Msa1113950:three_prime_UTR 45.0%
!! TGTGGGATGTGGATTTTGGT+GGG - chr7_3:60552979-60552998 Msa1113950:three_prime_UTR 45.0%
! ACCCATCTTTTCCTTCCTCA+AGG - chr7_3:60553064-60553083 Msa1113950:exon 45.0%
CCCTTGAGGAAGGAAAAGAT+GGG + chr7_3:60553068-60553087 None:intergenic 45.0%
! CCCATCTTTTCCTTCCTCAA+GGG - chr7_3:60553065-60553084 Msa1113950:exon 45.0%
ACCCTTGAGGAAGGAAAAGA+TGG + chr7_3:60553069-60553088 None:intergenic 45.0%
TGTTCTTCTCTTGACCCTTG+AGG + chr7_3:60553082-60553101 None:intergenic 45.0%
AAATCATAGCCTGTCATGCC+AGG + chr7_3:60553864-60553883 None:intergenic 45.0%
CGATCGGAAATATCCGAGTT+TGG - chr7_3:60554027-60554046 Msa1113950:intron 45.0%
! CCTTTCCTCTAAAAACCGGA+TGG + chr7_3:60554159-60554178 None:intergenic 45.0%
!! CCATCCGGTTTTTAGAGGAA+AGG - chr7_3:60554156-60554175 Msa1113950:intron 45.0%
TGTAACAGATGCTTGGAGGA+AGG - chr7_3:60554784-60554803 Msa1113950:intron 45.0%
!!! TAATGTTTATTTATTTATTT+TGG - chr7_3:60553482-60553501 Msa1113950:intron 5.0%
!! TTAAAAATTAAATATTAACT+TGG - chr7_3:60555216-60555235 Msa1113950:five_prime_UTR 5.0%
!! TAAAAATTAAATATTAACTT+GGG - chr7_3:60555217-60555236 Msa1113950:five_prime_UTR 5.0%
TCTGGTCGGATCTTGCTTTG+TGG - chr7_3:60552961-60552980 Msa1113950:three_prime_UTR 50.0%
CTGGTCGGATCTTGCTTTGT+GGG - chr7_3:60552962-60552981 Msa1113950:three_prime_UTR 50.0%
GGATCTTGCTTTGTGGGATG+TGG - chr7_3:60552968-60552987 Msa1113950:three_prime_UTR 50.0%
CTTCTCTTGACCCTTGAGGA+AGG + chr7_3:60553078-60553097 None:intergenic 50.0%
TACTGTATGCCTGGCATGAC+AGG - chr7_3:60553852-60553871 Msa1113950:intron 50.0%
TTTACAATCCGGAGTTCGGC+CGG - chr7_3:60554183-60554202 Msa1113950:intron 50.0%
GTGGCTATGCCACTGTATCT+TGG + chr7_3:60555123-60555142 None:intergenic 50.0%
TTACAATCCGGAGTTCGGCC+GGG - chr7_3:60554184-60554203 Msa1113950:intron 55.0%
CTTAATTCCCGGCCGAACTC+CGG + chr7_3:60554194-60554213 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 60552745 60555485 60552745 ID=Msa1113950;Name=Msa1113950
chr7_3 mRNA 60552745 60555485 60552745 ID=Msa1113950-mRNA-1;Parent=Msa1113950;Name=Msa1113950-mRNA-1;_AED=0.17;_eAED=0.17;_QI=453|1|1|1|1|1|5|333|238
chr7_3 exon 60552745 60553438 60552745 ID=Msa1113950-mRNA-1:exon:13640;Parent=Msa1113950-mRNA-1
chr7_3 exon 60553545 60553615 60553545 ID=Msa1113950-mRNA-1:exon:13639;Parent=Msa1113950-mRNA-1
chr7_3 exon 60554331 60554408 60554331 ID=Msa1113950-mRNA-1:exon:13638;Parent=Msa1113950-mRNA-1
chr7_3 exon 60554552 60554655 60554552 ID=Msa1113950-mRNA-1:exon:13637;Parent=Msa1113950-mRNA-1
chr7_3 exon 60554930 60555485 60554930 ID=Msa1113950-mRNA-1:exon:13636;Parent=Msa1113950-mRNA-1
chr7_3 five_prime_UTR 60555033 60555485 60555033 ID=Msa1113950-mRNA-1:five_prime_utr;Parent=Msa1113950-mRNA-1
chr7_3 CDS 60554930 60555032 60554930 ID=Msa1113950-mRNA-1:cds;Parent=Msa1113950-mRNA-1
chr7_3 CDS 60554552 60554655 60554552 ID=Msa1113950-mRNA-1:cds;Parent=Msa1113950-mRNA-1
chr7_3 CDS 60554331 60554408 60554331 ID=Msa1113950-mRNA-1:cds;Parent=Msa1113950-mRNA-1
chr7_3 CDS 60553545 60553615 60553545 ID=Msa1113950-mRNA-1:cds;Parent=Msa1113950-mRNA-1
chr7_3 CDS 60553078 60553438 60553078 ID=Msa1113950-mRNA-1:cds;Parent=Msa1113950-mRNA-1
chr7_3 three_prime_UTR 60552745 60553077 60552745 ID=Msa1113950-mRNA-1:three_prime_utr;Parent=Msa1113950-mRNA-1
Gene Sequence

>Msa1113950

ATGGGAATGGCAGCAGAGTCACAGTTTCATGTTTTGGCTGTTGATGACAGCATCATAGATAGGAAGCTTATTGAGAGGCTTCTCAAAACATCTTCATATCAAGTTACTACAGTTGATTCTGGTAGCAAGGCTTTAGAGTTTTTGGGTTTGTGTGAGAATGATGAGACCAACCCAAATACACCATCTGTATTTCCTAACAATCATCAGGAAGTGGAGGTGAATCTTGTTATAACAGATTACTGTATGCCTGGCATGACAGGCTATGATTTGCTTAAGAAAATCAAGGAATCATCATCATTGAGAAACATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGAATTAATAGATGCTTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAGCCTGTAAGGCTATCAGATTTAAACAGACTTAAACCTCACATGAAGAAAACCAAATTGAAAGATCCAAATCAAGAAACAGAACAAAAGATAGAAAATTCAGAAATTCTTGAAAATGAACAGCATCAAGCATCAAAATCTCAACATTCACATTTAGAGTCAGAGTCACAAACACAAACACAGTTACAAGCACATTCAACTATAGACCAACAGCAACAATCACTACAACAAGCCAACAATAACAAGAGAAAGAGTGTGGAACAAAGTCTTTCATCTGAAACTGACAGAACAAGACCAAGATACAGTGGCATAGCCACTGTTGTATGA
Protein sequence

>Msa1113950

MGMAAESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCENDETNPNTPSVFPNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLNRLKPHMKKTKLKDPNQETEQKIENSEILENEQHQASKSQHSHLESESQTQTQLQAHSTIDQQQQSLQQANNNKRKSVEQSLSSETDRTRPRYSGIATVV*