AlfalfaGEDB | Msa1465680

M. sativa cultivar zhongmu-4 / Msa1465680

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465680	XP_024626467.1	96.575	146	4	1	12	156	94	239	2.23e-92	278

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465680	sp\|O80366\|ARR9_ARATH	55.034	149	54	5	12	156	95	234	3.48e-42	143

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465680	A0A072U1M0	96.575	146	4	1	12	156	94	239	1.07e-92	278

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0040690	Msa1465680	0.841655	4.165089e-58	-8.615850e-47
Msa0052610	Msa1465680	0.846309	2.355451e-59	-8.615850e-47
Msa0067870	Msa1465680	0.826164	3.152879e-54	-8.615850e-47
Msa0077880	Msa1465680	0.816663	4.923516e-52	-8.615850e-47
Msa0097850	Msa1465680	0.851663	7.664618e-61	-8.615850e-47
Msa0098470	Msa1465680	0.817354	3.444140e-52	-8.615850e-47
Msa0100800	Msa1465680	0.801013	1.100195e-48	-8.615850e-47
Msa0131330	Msa1465680	0.803050	4.193241e-49	-8.615850e-47
Msa0154440	Msa1465680	0.815780	7.757675e-52	-8.615850e-47
Msa0181230	Msa1465680	0.804600	1.998281e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465680	MtrunA17_Chr7g0256551	96.575	146	4	1	12	156	94	239	2.05e-96	278
Msa1465680	MtrunA17_Chr8g0352871	73.016	63	17	0	12	74	93	155	1.26e-28	103
Msa1465680	MtrunA17_Chr3g0082861	79.661	59	12	0	12	70	89	147	1.63e-28	103
Msa1465680	MtrunA17_Chr5g0414931	52.857	70	33	0	12	81	96	165	1.34e-20	84.7
Msa1465680	MtrunA17_Chr4g0059571	52.778	72	34	0	12	83	102	173	1.81e-20	83.6
Msa1465680	MtrunA17_Chr3g0124861	64.151	53	19	0	14	66	117	169	7.62e-19	79.7
Msa1465680	MtrunA17_Chr3g0118211	50.746	67	33	0	12	78	99	165	7.06e-18	76.6
Msa1465680	MtrunA17_Chr1g0170741	61.538	52	20	0	12	63	87	138	8.30e-18	76.3
Msa1465680	MtrunA17_Chr3g0128691	59.091	44	18	0	16	59	100	143	6.81e-14	65.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465680	AT3G57040.2	55.034	149	54	5	12	156	95	234	3.53e-43	143
Msa1465680	AT3G57040.1	55.034	149	54	5	12	156	95	234	3.53e-43	143
Msa1465680	AT2G41310.1	51.034	145	59	4	12	156	93	225	2.27e-37	128
Msa1465680	AT2G07440.1	48.951	143	58	5	14	156	9	136	4.53e-34	117
Msa1465680	AT1G10470.2	59.677	62	24	1	13	73	35	96	5.82e-19	79.3
Msa1465680	AT1G10470.3	57.143	63	26	1	12	73	96	158	1.32e-18	79.7
Msa1465680	AT1G10470.1	57.143	63	26	1	12	73	110	172	1.39e-18	80.1
Msa1465680	AT3G48100.1	60.000	55	22	0	12	66	102	156	2.71e-18	77.8
Msa1465680	AT1G59940.1	57.407	54	23	0	12	65	109	162	3.35e-18	78.6
Msa1465680	AT5G62920.1	60.000	55	22	0	12	66	101	155	3.49e-18	77.4

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Find 30 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGAATGTGTAAGAGCA+TGG	0.635971	tig0045407:+975	Msa1465680:three_prime_UTR
AAGATTCTCTCTGATATTAC+AGG	0.275607	tig0045407:+220	Msa1465680:CDS
AATTGGAAGGGGATATTTCC+AGG	0.353288	tig0045407:-924	Msa1465680:intergenic
ACAATGAAGCACCGAGATTT+TGG	0.221714	tig0045407:-1095	Msa1465680:intergenic
ACTCTTTCTCTTGTTATTGT+TGG	0.284458	tig0045407:-685	Msa1465680:intergenic
ACTTGGGTGTTGGTTTATAT+AGG	0.347253	tig0045407:+859	Msa1465680:three_prime_UTR
AGAACAAGACCAAGATACAG+TGG	0.701894	tig0045407:+738	Msa1465680:CDS
ATATGAAACAAAATTGGAAG+GGG	0.538359	tig0045407:-935	Msa1465680:intergenic
ATCATTGAGAAACATACCAG+TGG	0.696105	tig0045407:+250	Msa1465680:CDS
ATGTGCCTTCAAGAATTAAT+AGG	0.368999	tig0045407:+291	Msa1465680:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAGAATCTTATAAGTCTT+TGG	-	tig0045407:211-230	None:intergenic	30.0%
AAGATTCTCTCTGATATTAC+AGG	+	tig0045407:220-239	Msa1465680:CDS	30.0%
ATGTGCCTTCAAGAATTAAT+AGG	+	tig0045407:291-310	Msa1465680:CDS	30.0%
TATCAAATGTAACAGATGCT+TGG	+	tig0045407:404-423	Msa1465680:intron	30.0%
GATTTATCATCATACAACAG+TGG	-	tig0045407:769-788	Msa1465680:intergenic	30.0%
TTGGTTTATATAGGCTCTAT+AGG	+	tig0045407:868-887	Msa1465680:three_prime_UTR	30.0%
ATTTCCAGGAAATGTTTACA+GGG	-	tig0045407:913-932	Msa1465680:intergenic	30.0%
TATTTCCAGGAAATGTTTAC+AGG	-	tig0045407:914-933	Msa1465680:intergenic	30.0%
AAATTGAATGTGTAAGAGCA+TGG	+	tig0045407:975-994	Msa1465680:three_prime_UTR	30.0%
GAGAGAATCTTATAAGTCTT+TGG	-	tig0045407:211-230	Msa1465680:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0045407	gene	203	1112	203	ID=Msa1465680;Name=Msa1465680
tig0045407	mRNA	203	1112	203	ID=Msa1465680-mRNA-1;Parent=Msa1465680;Name=Msa1465680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|1\|0.5\|1\|1\|1\|2\|333\|156
tig0045407	exon	203	312	203	ID=Msa1465680-mRNA-1:exon:24853;Parent=Msa1465680-mRNA-1
tig0045407	exon	419	1112	419	ID=Msa1465680-mRNA-1:exon:24854;Parent=Msa1465680-mRNA-1
tig0045407	CDS	203	312	203	ID=Msa1465680-mRNA-1:cds;Parent=Msa1465680-mRNA-1
tig0045407	CDS	419	779	419	ID=Msa1465680-mRNA-1:cds;Parent=Msa1465680-mRNA-1
tig0045407	three_prime_UTR	780	1112	780	ID=Msa1465680-mRNA-1:three_prime_utr;Parent=Msa1465680-mRNA-1

Gene Sequence

>Msa1465680

TGGAACCAAAGACTTATAAGATTCTCTCTGATATTACAGGAATCATCATCATTGAGAAACATACCAGTGGTGATTATGTCATCTGAAAATGTGCCTTCAAGAATTAATAGATGCTTGGAGGAAGGAGCAGAAGAGTTTTTCTTGAAGCCTGTAAGGCTATCAGATTTAAACAAACTTAAACCTCACATGAAGAAAACCAAATTGAAAGATCCAAATCAAGAAACAGAACAAAAGATAGAAAATTCAGAAATTCTTGAAAATGAACAGCATCAAGCATCAAAATCTCAACATTCACATTTAGAGTCAGAGTCACAAACACAGACACAGTTACAAGCACATTCAACAATAGATCAACAGCAACAATCACTACAACAAGCCAACAATAACAAGAGAAAGAGTGTGGAACAAAGTCTTTCATCTGAAACTGACAGAACAAGACCAAGATACAGTGGCATAGCCACTGTTGTATGA

Protein sequence

>Msa1465680

WNQRLIRFSLILQESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLNKLKPHMKKTKLKDPNQETEQKIENSEILENEQHQASKSQHSHLESESQTQTQLQAHSTIDQQQQSLQQANNNKRKSVEQSLSSETDRTRPRYSGIATVV*