Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465680 | XP_024626467.1 | 96.575 | 146 | 4 | 1 | 12 | 156 | 94 | 239 | 2.23e-92 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465680 | sp|O80366|ARR9_ARATH | 55.034 | 149 | 54 | 5 | 12 | 156 | 95 | 234 | 3.48e-42 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465680 | A0A072U1M0 | 96.575 | 146 | 4 | 1 | 12 | 156 | 94 | 239 | 1.07e-92 | 278 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040690 | Msa1465680 | 0.841655 | 4.165089e-58 | -8.615850e-47 |
| Msa0052610 | Msa1465680 | 0.846309 | 2.355451e-59 | -8.615850e-47 |
| Msa0067870 | Msa1465680 | 0.826164 | 3.152879e-54 | -8.615850e-47 |
| Msa0077880 | Msa1465680 | 0.816663 | 4.923516e-52 | -8.615850e-47 |
| Msa0097850 | Msa1465680 | 0.851663 | 7.664618e-61 | -8.615850e-47 |
| Msa0098470 | Msa1465680 | 0.817354 | 3.444140e-52 | -8.615850e-47 |
| Msa0100800 | Msa1465680 | 0.801013 | 1.100195e-48 | -8.615850e-47 |
| Msa1359270 | Msa1465680 | 0.801285 | 9.675412e-49 | -8.615850e-47 |
| Msa1360180 | Msa1465680 | 0.815835 | 7.541704e-52 | -8.615850e-47 |
| Msa1360980 | Msa1465680 | 0.820203 | 7.766295e-53 | -8.615850e-47 |
| Msa1400610 | Msa1465680 | -0.806971 | 6.347411e-50 | -8.615850e-47 |
| Msa1438050 | Msa1465680 | 0.804797 | 1.817998e-49 | -8.615850e-47 |
| Msa0615440 | Msa1465680 | 0.805318 | 1.414430e-49 | -8.615850e-47 |
| Msa0616240 | Msa1465680 | 0.807490 | 4.928624e-50 | -8.615850e-47 |
| Msa0698490 | Msa1465680 | 0.801413 | 9.112206e-49 | -8.615850e-47 |
| Msa0698660 | Msa1465680 | 0.802094 | 6.603445e-49 | -8.615850e-47 |
| Msa0699570 | Msa1465680 | 0.802147 | 6.439768e-49 | -8.615850e-47 |
| Msa0704660 | Msa1465680 | 0.810806 | 9.598617e-51 | -8.615850e-47 |
| Msa0705820 | Msa1465680 | 0.814005 | 1.920553e-51 | -8.615850e-47 |
| Msa0758230 | Msa1465680 | 0.809745 | 1.625725e-50 | -8.615850e-47 |
| Msa0800270 | Msa1465680 | 0.834720 | 2.546073e-56 | -8.615850e-47 |
| Msa0838260 | Msa1465680 | 0.846374 | 2.260512e-59 | -8.615850e-47 |
| Msa0131330 | Msa1465680 | 0.803050 | 4.193241e-49 | -8.615850e-47 |
| Msa0154440 | Msa1465680 | 0.815780 | 7.757675e-52 | -8.615850e-47 |
| Msa0181230 | Msa1465680 | 0.804600 | 1.998281e-49 | -8.615850e-47 |
| Msa0188890 | Msa1465680 | 0.803935 | 2.748929e-49 | -8.615850e-47 |
| Msa0197520 | Msa1465680 | 0.813453 | 2.540554e-51 | -8.615850e-47 |
| Msa0231380 | Msa1465680 | 0.801973 | 6.993155e-49 | -8.615850e-47 |
| Msa0231660 | Msa1465680 | 0.803733 | 3.027986e-49 | -8.615850e-47 |
| Msa0238230 | Msa1465680 | 0.804386 | 2.215117e-49 | -8.615850e-47 |
| Msa1226610 | Msa1465680 | 0.807448 | 5.030403e-50 | -8.615850e-47 |
| Msa1307600 | Msa1465680 | 0.801826 | 7.497211e-49 | -8.615850e-47 |
| Msa0367470 | Msa1465680 | 0.801636 | 8.200542e-49 | -8.615850e-47 |
| Msa0386920 | Msa1465680 | 0.815718 | 8.007810e-52 | -8.615850e-47 |
| Msa1025080 | Msa1465680 | 0.818950 | 1.500182e-52 | -8.615850e-47 |
| Msa1033660 | Msa1465680 | 0.850934 | 1.231190e-60 | -8.615850e-47 |
| Msa1073490 | Msa1465680 | 0.880617 | 4.736725e-70 | -8.615850e-47 |
| Msa1079230 | Msa1465680 | 0.814252 | 1.693391e-51 | -8.615850e-47 |
| Msa0270660 | Msa1465680 | 0.800915 | 1.151653e-48 | -8.615850e-47 |
| Msa0278790 | Msa1465680 | 0.806747 | 7.079842e-50 | -8.615850e-47 |
| Msa0316910 | Msa1465680 | 0.814835 | 1.258125e-51 | -8.615850e-47 |
| Msa0340380 | Msa1465680 | 0.806005 | 1.014911e-49 | -8.615850e-47 |
| Msa0357990 | Msa1465680 | 0.802063 | 6.702810e-49 | -8.615850e-47 |
| Msa1113950 | Msa1465680 | 0.810524 | 1.104157e-50 | -8.615850e-47 |
| Msa1126450 | Msa1465680 | 0.805449 | 1.327964e-49 | -8.615850e-47 |
| Msa1131560 | Msa1465680 | 0.812962 | 3.255295e-51 | -8.615850e-47 |
| Msa1135890 | Msa1465680 | 0.800840 | 1.193392e-48 | -8.615850e-47 |
| Msa1160310 | Msa1465680 | 0.876716 | 1.118847e-68 | -8.615850e-47 |
| Msa1163540 | Msa1465680 | 0.812701 | 3.714246e-51 | -8.615850e-47 |
| Msa1169040 | Msa1465680 | 0.811816 | 5.795046e-51 | -8.615850e-47 |
| Msa1223330 | Msa1465680 | 0.809636 | 1.715644e-50 | -8.615850e-47 |
| Msa0527020 | Msa1465680 | 0.800445 | 1.436593e-48 | -8.615850e-47 |
| Msa0581690 | Msa1465680 | 0.802403 | 5.703464e-49 | -8.615850e-47 |
| Msa0906780 | Msa1465680 | 0.803191 | 3.922485e-49 | -8.615850e-47 |
| Msa0944200 | Msa1465680 | 0.813723 | 2.215322e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465680 | MtrunA17_Chr7g0256551 | 96.575 | 146 | 4 | 1 | 12 | 156 | 94 | 239 | 2.05e-96 | 278 |
| Msa1465680 | MtrunA17_Chr8g0352871 | 73.016 | 63 | 17 | 0 | 12 | 74 | 93 | 155 | 1.26e-28 | 103 |
| Msa1465680 | MtrunA17_Chr3g0082861 | 79.661 | 59 | 12 | 0 | 12 | 70 | 89 | 147 | 1.63e-28 | 103 |
| Msa1465680 | MtrunA17_Chr5g0414931 | 52.857 | 70 | 33 | 0 | 12 | 81 | 96 | 165 | 1.34e-20 | 84.7 |
| Msa1465680 | MtrunA17_Chr4g0059571 | 52.778 | 72 | 34 | 0 | 12 | 83 | 102 | 173 | 1.81e-20 | 83.6 |
| Msa1465680 | MtrunA17_Chr3g0124861 | 64.151 | 53 | 19 | 0 | 14 | 66 | 117 | 169 | 7.62e-19 | 79.7 |
| Msa1465680 | MtrunA17_Chr3g0118211 | 50.746 | 67 | 33 | 0 | 12 | 78 | 99 | 165 | 7.06e-18 | 76.6 |
| Msa1465680 | MtrunA17_Chr1g0170741 | 61.538 | 52 | 20 | 0 | 12 | 63 | 87 | 138 | 8.30e-18 | 76.3 |
| Msa1465680 | MtrunA17_Chr3g0128691 | 59.091 | 44 | 18 | 0 | 16 | 59 | 100 | 143 | 6.81e-14 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465680 | AT3G57040.2 | 55.034 | 149 | 54 | 5 | 12 | 156 | 95 | 234 | 3.53e-43 | 143 |
| Msa1465680 | AT3G57040.1 | 55.034 | 149 | 54 | 5 | 12 | 156 | 95 | 234 | 3.53e-43 | 143 |
| Msa1465680 | AT2G41310.1 | 51.034 | 145 | 59 | 4 | 12 | 156 | 93 | 225 | 2.27e-37 | 128 |
| Msa1465680 | AT2G07440.1 | 48.951 | 143 | 58 | 5 | 14 | 156 | 9 | 136 | 4.53e-34 | 117 |
| Msa1465680 | AT1G10470.2 | 59.677 | 62 | 24 | 1 | 13 | 73 | 35 | 96 | 5.82e-19 | 79.3 |
| Msa1465680 | AT1G10470.3 | 57.143 | 63 | 26 | 1 | 12 | 73 | 96 | 158 | 1.32e-18 | 79.7 |
| Msa1465680 | AT1G10470.1 | 57.143 | 63 | 26 | 1 | 12 | 73 | 110 | 172 | 1.39e-18 | 80.1 |
| Msa1465680 | AT3G48100.1 | 60.000 | 55 | 22 | 0 | 12 | 66 | 102 | 156 | 2.71e-18 | 77.8 |
| Msa1465680 | AT1G59940.1 | 57.407 | 54 | 23 | 0 | 12 | 65 | 109 | 162 | 3.35e-18 | 78.6 |
| Msa1465680 | AT5G62920.1 | 60.000 | 55 | 22 | 0 | 12 | 66 | 101 | 155 | 3.49e-18 | 77.4 |
| Msa1465680 | AT2G40670.2 | 58.182 | 55 | 23 | 0 | 13 | 67 | 110 | 164 | 6.27e-18 | 76.3 |
| Msa1465680 | AT2G40670.1 | 53.226 | 62 | 27 | 1 | 8 | 67 | 102 | 163 | 1.85e-17 | 75.1 |
| Msa1465680 | AT1G59940.2 | 57.407 | 54 | 23 | 0 | 12 | 65 | 201 | 254 | 2.71e-17 | 77.4 |
| Msa1465680 | AT3G56380.2 | 60.784 | 51 | 20 | 0 | 13 | 63 | 99 | 149 | 5.22e-17 | 73.6 |
| Msa1465680 | AT3G56380.1 | 57.692 | 52 | 22 | 0 | 12 | 63 | 97 | 148 | 1.61e-16 | 72.4 |
| Msa1465680 | AT1G74890.1 | 65.306 | 49 | 17 | 0 | 12 | 60 | 94 | 142 | 2.92e-16 | 72.8 |
| Msa1465680 | AT1G19050.1 | 61.224 | 49 | 19 | 0 | 12 | 60 | 100 | 148 | 1.05e-15 | 71.2 |
Find 30 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAAATCTGATAGCCTTAC+AGG | 0.185020 | tig0045407:-456 | Msa1465680:intergenic |
| ACAATGAAGCACCGAGATTT+TGG | 0.221714 | tig0045407:-1095 | Msa1465680:intergenic |
| TTGATTTGGATCTTTCAATT+TGG | 0.240297 | tig0045407:-505 | Msa1465680:intergenic |
| GAGAGAATCTTATAAGTCTT+TGG | 0.270519 | tig0045407:-208 | Msa1465680:intergenic |
| AAGATTCTCTCTGATATTAC+AGG | 0.275607 | tig0045407:+220 | Msa1465680:CDS |
| ACTCTTTCTCTTGTTATTGT+TGG | 0.284458 | tig0045407:-685 | Msa1465680:intergenic |
| TATTTCCAGGAAATGTTTAC+AGG | 0.304991 | tig0045407:-911 | Msa1465680:intergenic |
| TGTTCCCTGTAAACATTTCC+TGG | 0.307533 | tig0045407:+906 | Msa1465680:three_prime_UTR |
| TCTTATAAGTCTTTGGTTCC+AGG | 0.309416 | tig0045407:-201 | Msa1465680:intergenic |
| ACTTGGGTGTTGGTTTATAT+AGG | 0.347253 | tig0045407:+859 | Msa1465680:three_prime_UTR |
| AATTGGAAGGGGATATTTCC+AGG | 0.353288 | tig0045407:-924 | Msa1465680:intergenic |
| ATGTGCCTTCAAGAATTAAT+AGG | 0.368999 | tig0045407:+291 | Msa1465680:CDS |
| TATTACCTATTAATTCTTGA+AGG | 0.405802 | tig0045407:-296 | Msa1465680:intergenic |
| TTGGTTTATATAGGCTCTAT+AGG | 0.429787 | tig0045407:+868 | Msa1465680:three_prime_UTR |
| TTAAATATTAACTTGGGTGT+TGG | 0.433869 | tig0045407:+849 | Msa1465680:three_prime_UTR |
| TTGTATGATGATAAATCATT+TGG | 0.463555 | tig0045407:+772 | Msa1465680:exon |
| GTGGCTATGCCACTGTATCT+TGG | 0.467016 | tig0045407:-747 | Msa1465680:intergenic |
| TATCAAATGTAACAGATGCT+TGG | 0.497655 | tig0045407:+404 | Msa1465680:intron |
| TCATATGAAACAAAATTGGA+AGG | 0.508230 | tig0045407:-937 | Msa1465680:intergenic |
| CATATGAAACAAAATTGGAA+GGG | 0.522607 | tig0045407:-936 | Msa1465680:intergenic |
| CAAATGTAACAGATGCTTGG+AGG | 0.523574 | tig0045407:+407 | Msa1465680:intron |
| ATATGAAACAAAATTGGAAG+GGG | 0.538359 | tig0045407:-935 | Msa1465680:intergenic |
| TCAGATGACATAATCACCAC+TGG | 0.584254 | tig0045407:-266 | Msa1465680:intergenic |
| TGTAACAGATGCTTGGAGGA+AGG | 0.588489 | tig0045407:+411 | Msa1465680:intron |
| ATTTCCAGGAAATGTTTACA+GGG | 0.615752 | tig0045407:-910 | Msa1465680:intergenic |
| AAATTGAATGTGTAAGAGCA+TGG | 0.635971 | tig0045407:+975 | Msa1465680:three_prime_UTR |
| CAATAACAAGAGAAAGAGTG+TGG | 0.644460 | tig0045407:+689 | Msa1465680:CDS |
| ATCATTGAGAAACATACCAG+TGG | 0.696105 | tig0045407:+250 | Msa1465680:CDS |
| GATTTATCATCATACAACAG+TGG | 0.696351 | tig0045407:-766 | Msa1465680:intergenic |
| AGAACAAGACCAAGATACAG+TGG | 0.701894 | tig0045407:+738 | Msa1465680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGAAATAAAATGAAATA+AGG | - | tig0045407:334-353 | Msa1465680:intergenic | 10.0% |
| !! | AATAGAAATAAAATGAAATA+AGG | - | tig0045407:334-353 | Msa1465680:intergenic | 10.0% |
| !!! | ATTTTCATATGAAACAAAAT+TGG | - | tig0045407:944-963 | Msa1465680:intergenic | 15.0% |
| !!! | ATTTTCATATGAAACAAAAT+TGG | - | tig0045407:944-963 | Msa1465680:intergenic | 15.0% |
| !! | TATTACCTATTAATTCTTGA+AGG | - | tig0045407:299-318 | Msa1465680:intergenic | 20.0% |
| !!! | TTATTTCTATTTTTCCACTT+TGG | + | tig0045407:343-362 | Msa1465680:intron | 20.0% |
| !! | TATAATTAAAATGACCAAAG+TGG | - | tig0045407:360-379 | Msa1465680:intergenic | 20.0% |
| !! | TTGTATGATGATAAATCATT+TGG | + | tig0045407:772-791 | Msa1465680:exon | 20.0% |
| !! | TATTACCTATTAATTCTTGA+AGG | - | tig0045407:299-318 | Msa1465680:intergenic | 20.0% |
| !!! | TTATTTCTATTTTTCCACTT+TGG | + | tig0045407:343-362 | Msa1465680:intron | 20.0% |
| !! | TATAATTAAAATGACCAAAG+TGG | - | tig0045407:360-379 | Msa1465680:intergenic | 20.0% |
| !! | TTGTATGATGATAAATCATT+TGG | + | tig0045407:772-791 | Msa1465680:exon | 20.0% |
| !!! | TTGATTTGGATCTTTCAATT+TGG | - | tig0045407:508-527 | Msa1465680:intergenic | 25.0% |
| !!! | TTTTGTTCTGTTTCTTGATT+TGG | - | tig0045407:522-541 | Msa1465680:intergenic | 25.0% |
| !! | TTAAATATTAACTTGGGTGT+TGG | + | tig0045407:849-868 | Msa1465680:three_prime_UTR | 25.0% |
| ! | ATATGAAACAAAATTGGAAG+GGG | - | tig0045407:938-957 | Msa1465680:intergenic | 25.0% |
| ! | CATATGAAACAAAATTGGAA+GGG | - | tig0045407:939-958 | Msa1465680:intergenic | 25.0% |
| ! | TCATATGAAACAAAATTGGA+AGG | - | tig0045407:940-959 | Msa1465680:intergenic | 25.0% |
| !!! | TTGATTTGGATCTTTCAATT+TGG | - | tig0045407:508-527 | Msa1465680:intergenic | 25.0% |
| !!! | TTTTGTTCTGTTTCTTGATT+TGG | - | tig0045407:522-541 | Msa1465680:intergenic | 25.0% |
| !! | TTAAATATTAACTTGGGTGT+TGG | + | tig0045407:849-868 | Msa1465680:three_prime_UTR | 25.0% |
| ! | ATATGAAACAAAATTGGAAG+GGG | - | tig0045407:938-957 | Msa1465680:intergenic | 25.0% |
| ! | CATATGAAACAAAATTGGAA+GGG | - | tig0045407:939-958 | Msa1465680:intergenic | 25.0% |
| ! | TCATATGAAACAAAATTGGA+AGG | - | tig0045407:940-959 | Msa1465680:intergenic | 25.0% |
| GAGAGAATCTTATAAGTCTT+TGG | - | tig0045407:211-230 | None:intergenic | 30.0% | |
| AAGATTCTCTCTGATATTAC+AGG | + | tig0045407:220-239 | Msa1465680:CDS | 30.0% | |
| ATGTGCCTTCAAGAATTAAT+AGG | + | tig0045407:291-310 | Msa1465680:CDS | 30.0% | |
| TATCAAATGTAACAGATGCT+TGG | + | tig0045407:404-423 | Msa1465680:intron | 30.0% | |
| ! | TTTAAATCTGATAGCCTTAC+AGG | - | tig0045407:459-478 | Msa1465680:intergenic | 30.0% |
| !!! | AATTTGGTTTTCTTCATGTG+AGG | - | tig0045407:492-511 | Msa1465680:intergenic | 30.0% |
| !! | ACTCTTTCTCTTGTTATTGT+TGG | - | tig0045407:688-707 | Msa1465680:intergenic | 30.0% |
| GATTTATCATCATACAACAG+TGG | - | tig0045407:769-788 | Msa1465680:intergenic | 30.0% | |
| TTGGTTTATATAGGCTCTAT+AGG | + | tig0045407:868-887 | Msa1465680:three_prime_UTR | 30.0% | |
| ATTTCCAGGAAATGTTTACA+GGG | - | tig0045407:913-932 | Msa1465680:intergenic | 30.0% | |
| TATTTCCAGGAAATGTTTAC+AGG | - | tig0045407:914-933 | Msa1465680:intergenic | 30.0% | |
| AAATTGAATGTGTAAGAGCA+TGG | + | tig0045407:975-994 | Msa1465680:three_prime_UTR | 30.0% | |
| GAGAGAATCTTATAAGTCTT+TGG | - | tig0045407:211-230 | Msa1465680:intergenic | 30.0% | |
| AAGATTCTCTCTGATATTAC+AGG | + | tig0045407:220-239 | Msa1465680:CDS | 30.0% | |
| ATGTGCCTTCAAGAATTAAT+AGG | + | tig0045407:291-310 | Msa1465680:CDS | 30.0% | |
| TATCAAATGTAACAGATGCT+TGG | + | tig0045407:404-423 | Msa1465680:intron | 30.0% | |
| ! | TTTAAATCTGATAGCCTTAC+AGG | - | tig0045407:459-478 | Msa1465680:intergenic | 30.0% |
| !!! | AATTTGGTTTTCTTCATGTG+AGG | - | tig0045407:492-511 | Msa1465680:intergenic | 30.0% |
| !! | ACTCTTTCTCTTGTTATTGT+TGG | - | tig0045407:688-707 | Msa1465680:intergenic | 30.0% |
| GATTTATCATCATACAACAG+TGG | - | tig0045407:769-788 | Msa1465680:intergenic | 30.0% | |
| TTGGTTTATATAGGCTCTAT+AGG | + | tig0045407:868-887 | Msa1465680:three_prime_UTR | 30.0% | |
| ATTTCCAGGAAATGTTTACA+GGG | - | tig0045407:913-932 | Msa1465680:intergenic | 30.0% | |
| TATTTCCAGGAAATGTTTAC+AGG | - | tig0045407:914-933 | Msa1465680:intergenic | 30.0% | |
| AAATTGAATGTGTAAGAGCA+TGG | + | tig0045407:975-994 | Msa1465680:three_prime_UTR | 30.0% | |
| ATCATTGAGAAACATACCAG+TGG | + | tig0045407:250-269 | Msa1465680:CDS | 35.0% | |
| ! | AGTTTTTCTTGAAGCCTGTA+AGG | + | tig0045407:442-461 | Msa1465680:CDS | 35.0% |
| CAATAACAAGAGAAAGAGTG+TGG | + | tig0045407:689-708 | Msa1465680:CDS | 35.0% | |
| !! | ACTTGGGTGTTGGTTTATAT+AGG | + | tig0045407:859-878 | Msa1465680:three_prime_UTR | 35.0% |
| ! | TGTAGCTTTTGCCAAAATCT+CGG | + | tig0045407:1084-1103 | Msa1465680:three_prime_UTR | 35.0% |
| ATCATTGAGAAACATACCAG+TGG | + | tig0045407:250-269 | Msa1465680:CDS | 35.0% | |
| ! | AGTTTTTCTTGAAGCCTGTA+AGG | + | tig0045407:442-461 | Msa1465680:CDS | 35.0% |
| CAATAACAAGAGAAAGAGTG+TGG | + | tig0045407:689-708 | Msa1465680:CDS | 35.0% | |
| !! | ACTTGGGTGTTGGTTTATAT+AGG | + | tig0045407:859-878 | Msa1465680:three_prime_UTR | 35.0% |
| ! | TGTAGCTTTTGCCAAAATCT+CGG | + | tig0045407:1084-1103 | Msa1465680:three_prime_UTR | 35.0% |
| TCAGATGACATAATCACCAC+TGG | - | tig0045407:269-288 | Msa1465680:intergenic | 40.0% | |
| CAAATGTAACAGATGCTTGG+AGG | + | tig0045407:407-426 | Msa1465680:intron | 40.0% | |
| AGAACAAGACCAAGATACAG+TGG | + | tig0045407:738-757 | Msa1465680:CDS | 40.0% | |
| TGTTCCCTGTAAACATTTCC+TGG | + | tig0045407:906-925 | Msa1465680:three_prime_UTR | 40.0% | |
| AATTGGAAGGGGATATTTCC+AGG | - | tig0045407:927-946 | Msa1465680:intergenic | 40.0% | |
| TCAGATGACATAATCACCAC+TGG | - | tig0045407:269-288 | Msa1465680:intergenic | 40.0% | |
| CAAATGTAACAGATGCTTGG+AGG | + | tig0045407:407-426 | Msa1465680:intron | 40.0% | |
| AGAACAAGACCAAGATACAG+TGG | + | tig0045407:738-757 | Msa1465680:CDS | 40.0% | |
| TGTTCCCTGTAAACATTTCC+TGG | + | tig0045407:906-925 | Msa1465680:three_prime_UTR | 40.0% | |
| AATTGGAAGGGGATATTTCC+AGG | - | tig0045407:927-946 | Msa1465680:intergenic | 40.0% | |
| TGTAACAGATGCTTGGAGGA+AGG | + | tig0045407:411-430 | Msa1465680:intron | 45.0% | |
| TGTAACAGATGCTTGGAGGA+AGG | + | tig0045407:411-430 | Msa1465680:intron | 45.0% | |
| !! | TTAAAAATTAAATATTAACT+TGG | + | tig0045407:842-861 | Msa1465680:three_prime_UTR | 5.0% |
| !! | TAAAAATTAAATATTAACTT+GGG | + | tig0045407:843-862 | Msa1465680:three_prime_UTR | 5.0% |
| !! | TTAAAAATTAAATATTAACT+TGG | + | tig0045407:842-861 | Msa1465680:three_prime_UTR | 5.0% |
| !! | TAAAAATTAAATATTAACTT+GGG | + | tig0045407:843-862 | Msa1465680:three_prime_UTR | 5.0% |
| GTGGCTATGCCACTGTATCT+TGG | - | tig0045407:750-769 | Msa1465680:intergenic | 50.0% | |
| !! | TGCCAAAATCTCGGTGCTTC+TGG | + | tig0045407:1093-1112 | Msa1465680:three_prime_UTR | 50.0% |
| GTGGCTATGCCACTGTATCT+TGG | - | tig0045407:750-769 | Msa1465680:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0045407 | gene | 203 | 1112 | 203 | ID=Msa1465680;Name=Msa1465680 |
| tig0045407 | mRNA | 203 | 1112 | 203 | ID=Msa1465680-mRNA-1;Parent=Msa1465680;Name=Msa1465680-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|333|156 |
| tig0045407 | exon | 203 | 312 | 203 | ID=Msa1465680-mRNA-1:exon:24853;Parent=Msa1465680-mRNA-1 |
| tig0045407 | exon | 419 | 1112 | 419 | ID=Msa1465680-mRNA-1:exon:24854;Parent=Msa1465680-mRNA-1 |
| tig0045407 | CDS | 203 | 312 | 203 | ID=Msa1465680-mRNA-1:cds;Parent=Msa1465680-mRNA-1 |
| tig0045407 | CDS | 419 | 779 | 419 | ID=Msa1465680-mRNA-1:cds;Parent=Msa1465680-mRNA-1 |
| tig0045407 | three_prime_UTR | 780 | 1112 | 780 | ID=Msa1465680-mRNA-1:three_prime_utr;Parent=Msa1465680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
