Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114060 | XP_003625068.1 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 3.50e-79 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114060 | sp|P27057|GAST1_SOLLC | 77.465 | 71 | 16 | 0 | 50 | 120 | 42 | 112 | 1.73e-36 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114060 | Q2HRH3 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 1.67e-79 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1073810 | Msa1114060 | 0.828673 | 7.890048e-55 | -8.615850e-47 |
| Msa1114060 | Msa1160020 | 0.904757 | 8.785228e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114060 | MtrunA17_Chr7g0256821 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 3.22e-83 | 238 |
| Msa1114060 | MtrunA17_Chr3g0092361 | 51.667 | 120 | 41 | 1 | 1 | 120 | 1 | 103 | 2.76e-37 | 122 |
| Msa1114060 | MtrunA17_Chr6g0453241 | 47.500 | 120 | 50 | 1 | 1 | 120 | 1 | 107 | 1.41e-33 | 112 |
| Msa1114060 | MtrunA17_Chr7g0217311 | 53.608 | 97 | 45 | 0 | 24 | 120 | 13 | 109 | 1.29e-32 | 110 |
| Msa1114060 | MtrunA17_Chr5g0434631 | 73.134 | 67 | 18 | 0 | 54 | 120 | 30 | 96 | 5.73e-32 | 108 |
| Msa1114060 | MtrunA17_Chr5g0446671 | 78.333 | 60 | 13 | 0 | 61 | 120 | 6 | 65 | 6.77e-31 | 104 |
| Msa1114060 | MtrunA17_Chr3g0078781 | 76.667 | 60 | 14 | 0 | 61 | 120 | 6 | 65 | 1.49e-30 | 103 |
| Msa1114060 | MtrunA17_Chr5g0415001 | 68.657 | 67 | 21 | 0 | 54 | 120 | 26 | 92 | 3.71e-30 | 103 |
| Msa1114060 | MtrunA17_Chr5g0415091 | 72.131 | 61 | 17 | 0 | 60 | 120 | 28 | 88 | 1.25e-26 | 94.7 |
| Msa1114060 | MtrunA17_Chr5g0415051 | 66.667 | 60 | 20 | 0 | 61 | 120 | 12 | 71 | 3.21e-23 | 85.5 |
| Msa1114060 | MtrunA17_Chr5g0415111 | 65.000 | 60 | 21 | 0 | 61 | 120 | 24 | 83 | 1.47e-22 | 84.3 |
| Msa1114060 | MtrunA17_Chr3g0134511 | 50.847 | 59 | 29 | 0 | 62 | 120 | 27 | 85 | 4.96e-14 | 62.4 |
| Msa1114060 | MtrunA17_Chr3g0142671 | 34.188 | 117 | 62 | 3 | 5 | 120 | 1 | 103 | 7.54e-14 | 62.4 |
| Msa1114060 | MtrunA17_Chr1g0200531 | 48.333 | 60 | 31 | 0 | 61 | 120 | 41 | 100 | 2.18e-13 | 61.2 |
| Msa1114060 | MtrunA17_Chr1g0207611 | 45.763 | 59 | 32 | 0 | 62 | 120 | 32 | 90 | 2.81e-13 | 60.8 |
| Msa1114060 | MtrunA17_Chr1g0156601 | 46.377 | 69 | 36 | 1 | 53 | 120 | 33 | 101 | 6.21e-13 | 60.1 |
| Msa1114060 | MtrunA17_Chr8g0364311 | 33.058 | 121 | 71 | 4 | 1 | 120 | 1 | 112 | 1.14e-12 | 59.7 |
| Msa1114060 | MtrunA17_Chr4g0013021 | 62.791 | 43 | 16 | 0 | 54 | 96 | 26 | 68 | 2.48e-12 | 57.8 |
| Msa1114060 | MtrunA17_Chr1g0156621 | 41.667 | 72 | 41 | 1 | 50 | 120 | 29 | 100 | 2.16e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1114060 | AT3G10185.1 | 64.000 | 125 | 37 | 3 | 1 | 120 | 1 | 122 | 4.28e-37 | 122 |
| Msa1114060 | AT1G74670.1 | 69.737 | 76 | 23 | 0 | 45 | 120 | 26 | 101 | 1.38e-34 | 115 |
| Msa1114060 | AT5G15230.1 | 48.246 | 114 | 44 | 2 | 7 | 120 | 8 | 106 | 4.94e-30 | 104 |
| Msa1114060 | AT5G15230.2 | 71.212 | 66 | 19 | 0 | 55 | 120 | 18 | 83 | 6.31e-29 | 100 |
| Msa1114060 | AT2G30810.1 | 51.282 | 117 | 44 | 3 | 5 | 120 | 2 | 106 | 7.72e-26 | 93.6 |
| Msa1114060 | AT3G02885.1 | 71.212 | 66 | 19 | 0 | 55 | 120 | 32 | 97 | 3.41e-22 | 84.0 |
| Msa1114060 | AT2G39540.1 | 47.692 | 65 | 34 | 0 | 56 | 120 | 23 | 87 | 7.61e-16 | 67.8 |
| Msa1114060 | AT1G10588.1 | 48.485 | 66 | 33 | 1 | 56 | 120 | 25 | 90 | 5.07e-15 | 65.5 |
| Msa1114060 | AT1G10588.2 | 48.485 | 66 | 33 | 1 | 56 | 120 | 24 | 89 | 9.78e-15 | 64.7 |
| Msa1114060 | AT1G22690.1 | 36.885 | 122 | 72 | 2 | 1 | 120 | 1 | 119 | 2.23e-14 | 64.7 |
| Msa1114060 | AT1G22690.2 | 36.885 | 122 | 72 | 2 | 1 | 120 | 1 | 119 | 2.23e-14 | 64.7 |
| Msa1114060 | AT1G22690.3 | 36.885 | 122 | 72 | 2 | 1 | 120 | 1 | 119 | 2.23e-14 | 64.7 |
| Msa1114060 | AT4G09600.1 | 46.377 | 69 | 36 | 1 | 52 | 120 | 32 | 99 | 4.89e-14 | 63.2 |
| Msa1114060 | AT5G59845.1 | 51.667 | 60 | 28 | 1 | 62 | 120 | 30 | 89 | 8.61e-14 | 62.4 |
| Msa1114060 | AT2G14900.1 | 36.082 | 97 | 48 | 1 | 24 | 120 | 26 | 108 | 1.55e-13 | 62.4 |
Find 32 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGGGTCCTCCCCTTT+TGG | 0.258816 | 7_3:-60665412 | None:intergenic |
| GTTAAATTCCTCCTAGAAAT+AGG | 0.285332 | 7_3:+60665736 | Msa1114060:three_prime_UTR |
| AAGAGTGTAAGTTATATTAT+AGG | 0.287207 | 7_3:-60664159 | None:intergenic |
| AGACAAACATAATTAAATTA+AGG | 0.347789 | 7_3:-60665653 | None:intergenic |
| GAAAGAAGATATCACAAGTT+TGG | 0.358833 | 7_3:-60664195 | None:intergenic |
| CTTGTCGTGTACCTATTTCT+AGG | 0.361945 | 7_3:-60665747 | None:intergenic |
| TTAAGGTACTTTAAATATCA+TGG | 0.365347 | 7_3:-60665636 | None:intergenic |
| TGTGTGCCTCCTGGCTATTA+TGG | 0.366912 | 7_3:+60665351 | Msa1114060:CDS |
| TTTGCCCTTGCTACAACAAC+TGG | 0.381953 | 7_3:+60665385 | Msa1114060:CDS |
| GTCTTCCAGTTGTTGTAGCA+AGG | 0.436792 | 7_3:-60665390 | None:intergenic |
| AAGTGTTTGTGTGTGCCTCC+TGG | 0.437793 | 7_3:+60665342 | Msa1114060:CDS |
| ACAACAACTGGAAGACCAAA+AGG | 0.460886 | 7_3:+60665397 | Msa1114060:CDS |
| AGTTATATTATAGGCAAATG+AGG | 0.512720 | 7_3:-60664150 | None:intergenic |
| CAACAACTGGAAGACCAAAA+GGG | 0.528864 | 7_3:+60665398 | Msa1114060:CDS |
| TGCTTGTTGCCATAATAGCC+AGG | 0.534265 | 7_3:-60665360 | None:intergenic |
| CTTGCGCTAGACTTCTATAG+TGG | 0.545031 | 7_3:-60665475 | None:intergenic |
| TCTTCCAGTTGTTGTAGCAA+GGG | 0.549133 | 7_3:-60665389 | None:intergenic |
| TGGCTATTATGGCAACAAGC+AGG | 0.551960 | 7_3:+60665362 | Msa1114060:CDS |
| GAAGAAGCAGCATTTGAACT+AGG | 0.567095 | 7_3:-60664263 | None:intergenic |
| TTGTGGAGCTGGAGCCTCAA+CGG | 0.577216 | 7_3:-60664900 | None:intergenic |
| TTTCAGCATGGCATCACTGA+AGG | 0.581824 | 7_3:+60665104 | Msa1114060:intron |
| TTGTTACAAAAGAATAAGCA+TGG | 0.618630 | 7_3:-60665309 | None:intergenic |
| AACAACTGGAAGACCAAAAG+GGG | 0.622992 | 7_3:+60665399 | Msa1114060:CDS |
| GTCGTGTACCTATTTCTAGG+AGG | 0.632942 | 7_3:-60665744 | None:intergenic |
| GATTGTTGTGTCCACCGTTG+AGG | 0.641899 | 7_3:+60664886 | Msa1114060:CDS |
| AACTGGAAGACCAAAAGGGG+AGG | 0.643524 | 7_3:+60665402 | Msa1114060:CDS |
| GTGCTTGTACATATATTGAG+TGG | 0.644083 | 7_3:-60665574 | None:intergenic |
| TGGAGCTGGAGCCTCAACGG+TGG | 0.663602 | 7_3:-60664897 | None:intergenic |
| GAGCATCTATTAGTGCATCG+TGG | 0.712242 | 7_3:-60665267 | None:intergenic |
| GAAGGCAGTCTTCAACCACA+AGG | 0.744634 | 7_3:+60665122 | Msa1114060:CDS |
| TGTGAGTATTGTAAACTCTG+AGG | 0.749548 | 7_3:+60665514 | Msa1114060:three_prime_UTR |
| TTGTTGCCATAATAGCCAGG+AGG | 0.777087 | 7_3:-60665357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTCATATAAAAAATTTAA+GGG | - | chr7_3:60665437-60665456 | None:intergenic | 10.0% |
| !! | ACTTCATATAAAAAATTTAA+GGG | - | chr7_3:60665437-60665456 | None:intergenic | 10.0% |
| !!! | ATGTTGTTTCTTTAAAATAT+GGG | + | chr7_3:60664687-60664706 | Msa1114060:intron | 15.0% |
| !!! | GAAAATGTAATATTTTTACA+TGG | - | chr7_3:60664767-60664786 | None:intergenic | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | + | chr7_3:60664990-60665009 | Msa1114060:intron | 15.0% |
| !! | GACTTCATATAAAAAATTTA+AGG | - | chr7_3:60665438-60665457 | None:intergenic | 15.0% |
| !!! | TGGTAATATAACATTTTTAT+CGG | - | chr7_3:60665557-60665576 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | - | chr7_3:60665656-60665675 | None:intergenic | 15.0% |
| !!! | AATTTTTGTCTTATACTTTA+AGG | - | chr7_3:60665700-60665719 | None:intergenic | 15.0% |
| !!! | ATGTTGTTTCTTTAAAATAT+GGG | + | chr7_3:60664687-60664706 | Msa1114060:intron | 15.0% |
| !!! | GAAAATGTAATATTTTTACA+TGG | - | chr7_3:60664767-60664786 | None:intergenic | 15.0% |
| !!! | ATTTTCATATTTTCTGTTTT+AGG | + | chr7_3:60664990-60665009 | Msa1114060:intron | 15.0% |
| !! | GACTTCATATAAAAAATTTA+AGG | - | chr7_3:60665438-60665457 | None:intergenic | 15.0% |
| !!! | TGGTAATATAACATTTTTAT+CGG | - | chr7_3:60665557-60665576 | None:intergenic | 15.0% |
| !! | AGACAAACATAATTAAATTA+AGG | - | chr7_3:60665656-60665675 | None:intergenic | 15.0% |
| !!! | AATTTTTGTCTTATACTTTA+AGG | - | chr7_3:60665700-60665719 | None:intergenic | 15.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | - | chr7_3:60664162-60664181 | None:intergenic | 20.0% |
| !!! | CATGTTGTTTCTTTAAAATA+TGG | + | chr7_3:60664686-60664705 | Msa1114060:intron | 20.0% |
| !!! | CTTTAATTTGTTGTAACTAT+TGG | + | chr7_3:60664786-60664805 | Msa1114060:intron | 20.0% |
| !! | TGATGAGTTACATAAATATT+TGG | - | chr7_3:60664840-60664859 | None:intergenic | 20.0% |
| !! | ATAATAATAATGATGCTTTC+AGG | + | chr7_3:60664859-60664878 | Msa1114060:intron | 20.0% |
| !! | CAAAAAAAAAAACTCACATT+GGG | - | chr7_3:60664956-60664975 | None:intergenic | 20.0% |
| !! | AAGCAAGAAATTAACATTAA+AGG | - | chr7_3:60665073-60665092 | None:intergenic | 20.0% |
| !! | AAATTAATATTGATCCATGT+TGG | + | chr7_3:60665209-60665228 | Msa1114060:intron | 20.0% |
| !!! | TAAAAAATTTAAGGGCATTT+GGG | - | chr7_3:60665429-60665448 | None:intergenic | 20.0% |
| !!! | ATAAAAAATTTAAGGGCATT+TGG | - | chr7_3:60665430-60665449 | None:intergenic | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | - | chr7_3:60665639-60665658 | None:intergenic | 20.0% |
| !! | ATAAGACAAAAATTTCACAT+TGG | + | chr7_3:60665706-60665725 | Msa1114060:three_prime_UTR | 20.0% |
| !!! | AAGAGTGTAAGTTATATTAT+AGG | - | chr7_3:60664162-60664181 | None:intergenic | 20.0% |
| !!! | CATGTTGTTTCTTTAAAATA+TGG | + | chr7_3:60664686-60664705 | Msa1114060:intron | 20.0% |
| !!! | CTTTAATTTGTTGTAACTAT+TGG | + | chr7_3:60664786-60664805 | Msa1114060:intron | 20.0% |
| !! | TGATGAGTTACATAAATATT+TGG | - | chr7_3:60664840-60664859 | None:intergenic | 20.0% |
| !! | ATAATAATAATGATGCTTTC+AGG | + | chr7_3:60664859-60664878 | Msa1114060:intron | 20.0% |
| !! | CAAAAAAAAAAACTCACATT+GGG | - | chr7_3:60664956-60664975 | None:intergenic | 20.0% |
| !! | AAGCAAGAAATTAACATTAA+AGG | - | chr7_3:60665073-60665092 | None:intergenic | 20.0% |
| !! | AAATTAATATTGATCCATGT+TGG | + | chr7_3:60665209-60665228 | Msa1114060:intron | 20.0% |
| !!! | TAAAAAATTTAAGGGCATTT+GGG | - | chr7_3:60665429-60665448 | None:intergenic | 20.0% |
| !!! | ATAAAAAATTTAAGGGCATT+TGG | - | chr7_3:60665430-60665449 | None:intergenic | 20.0% |
| !!! | TTAAGGTACTTTAAATATCA+TGG | - | chr7_3:60665639-60665658 | None:intergenic | 20.0% |
| !! | ATAAGACAAAAATTTCACAT+TGG | + | chr7_3:60665706-60665725 | Msa1114060:three_prime_UTR | 20.0% |
| ! | AGTTATATTATAGGCAAATG+AGG | - | chr7_3:60664153-60664172 | None:intergenic | 25.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | + | chr7_3:60664212-60664231 | Msa1114060:exon | 25.0% |
| ! | ATTAACCAGATATTTGAACA+TGG | - | chr7_3:60664439-60664458 | None:intergenic | 25.0% |
| ! | AAATGATCATGTTTAGATAG+TGG | + | chr7_3:60664491-60664510 | Msa1114060:intron | 25.0% |
| ! | GCTATAATGTCAAATAGAAT+CGG | + | chr7_3:60664534-60664553 | Msa1114060:intron | 25.0% |
| ! | CCAAAAAAAAAAACTCACAT+TGG | - | chr7_3:60664957-60664976 | None:intergenic | 25.0% |
| !!! | CCAATGTGAGTTTTTTTTTT+TGG | + | chr7_3:60664954-60664973 | Msa1114060:intron | 25.0% |
| ! | CAAAAATGTTAAAACACAGA+AGG | - | chr7_3:60665040-60665059 | None:intergenic | 25.0% |
| ! | ACAATACTTGATTCATGAAA+TGG | + | chr7_3:60665151-60665170 | Msa1114060:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | - | chr7_3:60665312-60665331 | None:intergenic | 25.0% |
| !! | ACATTTTTATCGGTAGAAAT+CGG | - | chr7_3:60665547-60665566 | None:intergenic | 25.0% |
| !!! | AGTGATCGTACATTTTTTTT+GGG | - | chr7_3:60665605-60665624 | None:intergenic | 25.0% |
| !!! | TAGTGATCGTACATTTTTTT+TGG | - | chr7_3:60665606-60665625 | None:intergenic | 25.0% |
| ! | AGTTATATTATAGGCAAATG+AGG | - | chr7_3:60664153-60664172 | None:intergenic | 25.0% |
| !! | TCTTTCTCTATTTTCAACAA+TGG | + | chr7_3:60664212-60664231 | Msa1114060:exon | 25.0% |
| ! | ATTAACCAGATATTTGAACA+TGG | - | chr7_3:60664439-60664458 | None:intergenic | 25.0% |
| ! | AAATGATCATGTTTAGATAG+TGG | + | chr7_3:60664491-60664510 | Msa1114060:intron | 25.0% |
| ! | GCTATAATGTCAAATAGAAT+CGG | + | chr7_3:60664534-60664553 | Msa1114060:intron | 25.0% |
| ! | CCAAAAAAAAAAACTCACAT+TGG | - | chr7_3:60664957-60664976 | None:intergenic | 25.0% |
| !!! | CCAATGTGAGTTTTTTTTTT+TGG | + | chr7_3:60664954-60664973 | Msa1114060:intron | 25.0% |
| ! | CAAAAATGTTAAAACACAGA+AGG | - | chr7_3:60665040-60665059 | None:intergenic | 25.0% |
| ! | ACAATACTTGATTCATGAAA+TGG | + | chr7_3:60665151-60665170 | Msa1114060:intron | 25.0% |
| ! | TTGTTACAAAAGAATAAGCA+TGG | - | chr7_3:60665312-60665331 | None:intergenic | 25.0% |
| !! | ACATTTTTATCGGTAGAAAT+CGG | - | chr7_3:60665547-60665566 | None:intergenic | 25.0% |
| !!! | AGTGATCGTACATTTTTTTT+GGG | - | chr7_3:60665605-60665624 | None:intergenic | 25.0% |
| !!! | TAGTGATCGTACATTTTTTT+TGG | - | chr7_3:60665606-60665625 | None:intergenic | 25.0% |
| ! | TGTCTTTTATAGGTGAAATG+TGG | - | chr7_3:60664126-60664145 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | - | chr7_3:60664198-60664217 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | - | chr7_3:60664299-60664318 | None:intergenic | 30.0% | |
| !!! | CTTGTTGTTTTGATCAACAA+TGG | + | chr7_3:60664463-60664482 | Msa1114060:intron | 30.0% |
| !! | ATGTTTAGATAGTGGAATTG+AGG | + | chr7_3:60664499-60664518 | Msa1114060:intron | 30.0% |
| ACTAAATGGAAACATTTCTC+AGG | - | chr7_3:60664621-60664640 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTAAA+TGG | - | chr7_3:60664635-60664654 | None:intergenic | 30.0% | |
| TTAAAGAAACAACATGCCTA+GGG | - | chr7_3:60664682-60664701 | None:intergenic | 30.0% | |
| TTTAAAGAAACAACATGCCT+AGG | - | chr7_3:60664683-60664702 | None:intergenic | 30.0% | |
| ! | AAGTATTGTTTGTTACCTTG+TGG | - | chr7_3:60665140-60665159 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | - | chr7_3:60665226-60665245 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | + | chr7_3:60665243-60665262 | Msa1114060:intron | 30.0% | |
| GTTAAATTCCTCCTAGAAAT+AGG | + | chr7_3:60665736-60665755 | Msa1114060:three_prime_UTR | 30.0% | |
| ! | TGTCTTTTATAGGTGAAATG+TGG | - | chr7_3:60664126-60664145 | None:intergenic | 30.0% |
| GAAAGAAGATATCACAAGTT+TGG | - | chr7_3:60664198-60664217 | None:intergenic | 30.0% | |
| AGAGAACTATAAGACTTACA+TGG | - | chr7_3:60664299-60664318 | None:intergenic | 30.0% | |
| !!! | CTTGTTGTTTTGATCAACAA+TGG | + | chr7_3:60664463-60664482 | Msa1114060:intron | 30.0% |
| !! | ATGTTTAGATAGTGGAATTG+AGG | + | chr7_3:60664499-60664518 | Msa1114060:intron | 30.0% |
| ACTAAATGGAAACATTTCTC+AGG | - | chr7_3:60664621-60664640 | None:intergenic | 30.0% | |
| AGTAGTCATCAAACACTAAA+TGG | - | chr7_3:60664635-60664654 | None:intergenic | 30.0% | |
| TTAAAGAAACAACATGCCTA+GGG | - | chr7_3:60664682-60664701 | None:intergenic | 30.0% | |
| TTTAAAGAAACAACATGCCT+AGG | - | chr7_3:60664683-60664702 | None:intergenic | 30.0% | |
| ! | AAGTATTGTTTGTTACCTTG+TGG | - | chr7_3:60665140-60665159 | None:intergenic | 30.0% |
| CATTAAGTCAATAACCAACA+TGG | - | chr7_3:60665226-60665245 | None:intergenic | 30.0% | |
| ATGCATTAAATTGCAGAATG+TGG | + | chr7_3:60665243-60665262 | Msa1114060:intron | 30.0% | |
| ! | ATGAGGCTTGTGTCTTTTAT+AGG | - | chr7_3:60664136-60664155 | None:intergenic | 35.0% |
| !!! | AGACTTACATGGTTTTGTAG+AGG | - | chr7_3:60664288-60664307 | None:intergenic | 35.0% |
| CTACACCATGTTCAAATATC+TGG | + | chr7_3:60664431-60664450 | Msa1114060:intron | 35.0% | |
| !!! | ACTCGAACATGTTTTGATCA+TGG | + | chr7_3:60664652-60664671 | Msa1114060:intron | 35.0% |
| ! | TGTGAGTATTGTAAACTCTG+AGG | + | chr7_3:60665514-60665533 | Msa1114060:three_prime_UTR | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | - | chr7_3:60665577-60665596 | None:intergenic | 35.0% | |
| ! | ATGAGGCTTGTGTCTTTTAT+AGG | - | chr7_3:60664136-60664155 | None:intergenic | 35.0% |
| !!! | AGACTTACATGGTTTTGTAG+AGG | - | chr7_3:60664288-60664307 | None:intergenic | 35.0% |
| CTACACCATGTTCAAATATC+TGG | + | chr7_3:60664431-60664450 | Msa1114060:intron | 35.0% | |
| !!! | ACTCGAACATGTTTTGATCA+TGG | + | chr7_3:60664652-60664671 | Msa1114060:intron | 35.0% |
| ! | TGTGAGTATTGTAAACTCTG+AGG | + | chr7_3:60665514-60665533 | Msa1114060:three_prime_UTR | 35.0% |
| GTGCTTGTACATATATTGAG+TGG | - | chr7_3:60665577-60665596 | None:intergenic | 35.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | - | chr7_3:60664266-60664285 | None:intergenic | 40.0% | |
| CTTCGAAAAATTGAAGTGCG+AGG | - | chr7_3:60664395-60664414 | None:intergenic | 40.0% | |
| CGGTAGTAGAGTCTAATGAA+AGG | + | chr7_3:60664554-60664573 | Msa1114060:intron | 40.0% | |
| TCTTCATTCATCGCATTGTG+AGG | - | chr7_3:60664586-60664605 | None:intergenic | 40.0% | |
| ! | TTTTGATCATGGCATTCCCT+AGG | + | chr7_3:60664663-60664682 | Msa1114060:intron | 40.0% |
| !!! | CCATTGTTTTTGCTAGGTTG+TGG | - | chr7_3:60664920-60664939 | None:intergenic | 40.0% |
| CCACAACCTAGCAAAAACAA+TGG | + | chr7_3:60664917-60664936 | Msa1114060:CDS | 40.0% | |
| TGTTTCCCTGAATTTCAGCA+TGG | + | chr7_3:60665092-60665111 | Msa1114060:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | - | chr7_3:60665100-60665119 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | - | chr7_3:60665392-60665411 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | + | chr7_3:60665397-60665416 | Msa1114060:CDS | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | + | chr7_3:60665398-60665417 | Msa1114060:CDS | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | + | chr7_3:60665399-60665418 | Msa1114060:CDS | 40.0% | |
| GAAGAAGCAGCATTTGAACT+AGG | - | chr7_3:60664266-60664285 | None:intergenic | 40.0% | |
| CTTCGAAAAATTGAAGTGCG+AGG | - | chr7_3:60664395-60664414 | None:intergenic | 40.0% | |
| CGGTAGTAGAGTCTAATGAA+AGG | + | chr7_3:60664554-60664573 | Msa1114060:intron | 40.0% | |
| TCTTCATTCATCGCATTGTG+AGG | - | chr7_3:60664586-60664605 | None:intergenic | 40.0% | |
| ! | TTTTGATCATGGCATTCCCT+AGG | + | chr7_3:60664663-60664682 | Msa1114060:intron | 40.0% |
| !!! | CCATTGTTTTTGCTAGGTTG+TGG | - | chr7_3:60664920-60664939 | None:intergenic | 40.0% |
| CCACAACCTAGCAAAAACAA+TGG | + | chr7_3:60664917-60664936 | Msa1114060:CDS | 40.0% | |
| TGTTTCCCTGAATTTCAGCA+TGG | + | chr7_3:60665092-60665111 | Msa1114060:intron | 40.0% | |
| TGATGCCATGCTGAAATTCA+GGG | - | chr7_3:60665100-60665119 | None:intergenic | 40.0% | |
| TCTTCCAGTTGTTGTAGCAA+GGG | - | chr7_3:60665392-60665411 | None:intergenic | 40.0% | |
| ACAACAACTGGAAGACCAAA+AGG | + | chr7_3:60665397-60665416 | Msa1114060:CDS | 40.0% | |
| CAACAACTGGAAGACCAAAA+GGG | + | chr7_3:60665398-60665417 | Msa1114060:CDS | 40.0% | |
| AACAACTGGAAGACCAAAAG+GGG | + | chr7_3:60665399-60665418 | Msa1114060:CDS | 40.0% | |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | - | chr7_3:60664914-60664933 | None:intergenic | 45.0% |
| !!! | GCAGTGCCATTGTTTTTGCT+AGG | - | chr7_3:60664926-60664945 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | - | chr7_3:60665101-60665120 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | + | chr7_3:60665104-60665123 | Msa1114060:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | - | chr7_3:60665270-60665289 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | - | chr7_3:60665360-60665379 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | - | chr7_3:60665363-60665382 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | + | chr7_3:60665362-60665381 | Msa1114060:CDS | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | + | chr7_3:60665385-60665404 | Msa1114060:CDS | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | - | chr7_3:60665393-60665412 | None:intergenic | 45.0% | |
| CTTGCGCTAGACTTCTATAG+TGG | - | chr7_3:60665478-60665497 | None:intergenic | 45.0% | |
| ! | TTTTTGCTAGGTTGTGGAGC+TGG | - | chr7_3:60664914-60664933 | None:intergenic | 45.0% |
| !!! | GCAGTGCCATTGTTTTTGCT+AGG | - | chr7_3:60664926-60664945 | None:intergenic | 45.0% |
| GTGATGCCATGCTGAAATTC+AGG | - | chr7_3:60665101-60665120 | None:intergenic | 45.0% | |
| TTTCAGCATGGCATCACTGA+AGG | + | chr7_3:60665104-60665123 | Msa1114060:intron | 45.0% | |
| GAGCATCTATTAGTGCATCG+TGG | - | chr7_3:60665270-60665289 | None:intergenic | 45.0% | |
| TTGTTGCCATAATAGCCAGG+AGG | - | chr7_3:60665360-60665379 | None:intergenic | 45.0% | |
| ! | TGCTTGTTGCCATAATAGCC+AGG | - | chr7_3:60665363-60665382 | None:intergenic | 45.0% |
| TGGCTATTATGGCAACAAGC+AGG | + | chr7_3:60665362-60665381 | Msa1114060:CDS | 45.0% | |
| TTTGCCCTTGCTACAACAAC+TGG | + | chr7_3:60665385-60665404 | Msa1114060:CDS | 45.0% | |
| GTCTTCCAGTTGTTGTAGCA+AGG | - | chr7_3:60665393-60665412 | None:intergenic | 45.0% | |
| CTTGCGCTAGACTTCTATAG+TGG | - | chr7_3:60665478-60665497 | None:intergenic | 45.0% | |
| GATTGTTGTGTCCACCGTTG+AGG | + | chr7_3:60664886-60664905 | Msa1114060:CDS | 50.0% | |
| GAAGGCAGTCTTCAACCACA+AGG | + | chr7_3:60665122-60665141 | Msa1114060:CDS | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | + | chr7_3:60665342-60665361 | Msa1114060:CDS | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | + | chr7_3:60665351-60665370 | Msa1114060:CDS | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | + | chr7_3:60665402-60665421 | Msa1114060:CDS | 50.0% | |
| GATTGTTGTGTCCACCGTTG+AGG | + | chr7_3:60664886-60664905 | Msa1114060:CDS | 50.0% | |
| GAAGGCAGTCTTCAACCACA+AGG | + | chr7_3:60665122-60665141 | Msa1114060:CDS | 50.0% | |
| AAGTGTTTGTGTGTGCCTCC+TGG | + | chr7_3:60665342-60665361 | Msa1114060:CDS | 50.0% | |
| TGTGTGCCTCCTGGCTATTA+TGG | + | chr7_3:60665351-60665370 | Msa1114060:CDS | 50.0% | |
| AACTGGAAGACCAAAAGGGG+AGG | + | chr7_3:60665402-60665421 | Msa1114060:CDS | 50.0% | |
| TTGTGGAGCTGGAGCCTCAA+CGG | - | chr7_3:60664903-60664922 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | - | chr7_3:60665415-60665434 | None:intergenic | 55.0% |
| TTGTGGAGCTGGAGCCTCAA+CGG | - | chr7_3:60664903-60664922 | None:intergenic | 55.0% | |
| ! | GCATTTGGGTCCTCCCCTTT+TGG | - | chr7_3:60665415-60665434 | None:intergenic | 55.0% |
| TGGAGCTGGAGCCTCAACGG+TGG | - | chr7_3:60664900-60664919 | None:intergenic | 65.0% | |
| TGGAGCTGGAGCCTCAACGG+TGG | - | chr7_3:60664900-60664919 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 60664109 | 60665758 | 60664109 | ID=Msa1114060;Name=Msa1114060 |
| chr7_3 | mRNA | 60664109 | 60665758 | 60664109 | ID=Msa1114060-mRNA-1;Parent=Msa1114060;Name=Msa1114060-mRNA-1;_AED=0.04;_eAED=0.04;_QI=122|1|1|1|0.66|0.75|4|318|120 |
| chr7_3 | exon | 60664109 | 60664299 | 60664109 | ID=Msa1114060-mRNA-1:exon:13654;Parent=Msa1114060-mRNA-1 |
| chr7_3 | exon | 60664881 | 60664958 | 60664881 | ID=Msa1114060-mRNA-1:exon:13655;Parent=Msa1114060-mRNA-1 |
| chr7_3 | exon | 60665110 | 60665143 | 60665110 | ID=Msa1114060-mRNA-1:exon:13656;Parent=Msa1114060-mRNA-1 |
| chr7_3 | exon | 60665259 | 60665758 | 60665259 | ID=Msa1114060-mRNA-1:exon:13657;Parent=Msa1114060-mRNA-1 |
| chr7_3 | five_prime_UTR | 60664109 | 60664230 | 60664109 | ID=Msa1114060-mRNA-1:five_prime_utr;Parent=Msa1114060-mRNA-1 |
| chr7_3 | CDS | 60664231 | 60664299 | 60664231 | ID=Msa1114060-mRNA-1:cds;Parent=Msa1114060-mRNA-1 |
| chr7_3 | CDS | 60664881 | 60664958 | 60664881 | ID=Msa1114060-mRNA-1:cds;Parent=Msa1114060-mRNA-1 |
| chr7_3 | CDS | 60665110 | 60665143 | 60665110 | ID=Msa1114060-mRNA-1:cds;Parent=Msa1114060-mRNA-1 |
| chr7_3 | CDS | 60665259 | 60665440 | 60665259 | ID=Msa1114060-mRNA-1:cds;Parent=Msa1114060-mRNA-1 |
| chr7_3 | three_prime_UTR | 60665441 | 60665758 | 60665441 | ID=Msa1114060-mRNA-1:three_prime_utr;Parent=Msa1114060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
