AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1114210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1114210 MtrunA17_Chr7g0256641 97.571 247 6 0 1 247 1 247 0.0 503
Msa1114210 MtrunA17_Chr7g0231601 48.087 183 91 3 64 245 63 242 5.24e-56 181
Msa1114210 MtrunA17_Chr5g0416861 47.541 183 92 3 64 245 66 245 1.33e-54 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1114210 AT2G41250.1 78.818 203 43 0 45 247 58 260 1.32e-115 333
Msa1114210 AT1G14310.1 50.273 183 89 2 63 245 41 221 2.14e-57 184

Find 86 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAATTTATATTTATATA+TGG 0.218549 7_3:+60958696 None:intergenic
AGTGTTTAGGCTTTAGTTAC+AGG 0.225498 7_3:-60958669 Msa1114210:three_prime_UTR
CAGGCTGTGATGCATGGCTT+TGG 0.248789 7_3:-60959433 Msa1114210:CDS
TTAATGATGGTAGACCTTTC+TGG 0.249688 7_3:-60961712 Msa1114210:CDS
ATCTTGTATTCATTTATTAA+AGG 0.250230 7_3:+60963030 None:intergenic
ATGATCGTCGCAATGATATA+TGG 0.277640 7_3:-60959459 Msa1114210:CDS
TTCAGAAATATAGTTGGATT+TGG 0.302915 7_3:+60959532 None:intergenic
TTGAACACTTCTTCTGTGTT+AGG 0.306154 7_3:+60961487 None:intergenic
TAGAAACTCAGGTGTGAAAT+TGG 0.317258 7_3:-60961458 Msa1114210:CDS
AGGCTGTGATGCATGGCTTT+GGG 0.318097 7_3:-60959432 Msa1114210:CDS
TTTGGTGAGTGACTTGGATT+TGG 0.369028 7_3:+60962821 None:intergenic
TCTGAAAGCGTGTGAACTAT+TGG 0.383129 7_3:-60959515 Msa1114210:CDS
GATTATAGAAGATCTCTTTA+CGG 0.384557 7_3:-60962702 Msa1114210:CDS
CACAGCTGCGGCGGAGGAAG+TGG 0.389807 7_3:+60962773 None:intergenic
AAGGGTGTATGTAATAAAAT+AGG 0.391192 7_3:+60963136 None:intergenic
CACGCTTTCAGAAATATAGT+TGG 0.393418 7_3:+60959526 None:intergenic
TCGGTTAAGACCTCTCTTGC+GGG 0.408806 7_3:-60961413 Msa1114210:CDS
AGCACAGAGGATCGGGGTCC+AGG 0.409334 7_3:-60958760 Msa1114210:three_prime_UTR
AGCCACCACAGCTGCGGCGG+AGG 0.419941 7_3:+60962767 None:intergenic
TTTAGATATATAGAACGATT+GGG 0.421275 7_3:-60962529 Msa1114210:intron
TGTTCTTCCTTCTCAACCCA+TGG 0.422624 7_3:-60962634 Msa1114210:CDS
AGAACGATTGGGGAGAAGTA+TGG 0.428413 7_3:-60962518 Msa1114210:CDS
CTGAGGATGCTGTTCATGTT+GGG 0.434567 7_3:-60959483 Msa1114210:CDS
AAGAGCTTATAGTCAACCTT+GGG 0.436522 7_3:-60962456 Msa1114210:CDS
TCCTTCTCAACCCATGGCTC+AGG 0.437339 7_3:-60962628 Msa1114210:intron
GCTCTTCTTGTTGATGCTGT+TGG 0.438636 7_3:-60962663 Msa1114210:CDS
CTCACTATGTATTGCCAGAA+AGG 0.449095 7_3:+60961698 None:intergenic
TGACGGTGAACGGCACCATT+TGG 0.451681 7_3:+60962803 None:intergenic
CACTTCCTCCGCCGCAGCTG+TGG 0.460319 7_3:-60962772 Msa1114210:CDS
GCACCATTTGGTGAGTGACT+TGG 0.468245 7_3:+60962815 None:intergenic
TATTAATAAATAAAATAAAC+CGG 0.478283 7_3:-60958517 Msa1114210:three_prime_UTR
GAGTAACTCTACTGGCTGTT+CGG 0.479936 7_3:-60961678 Msa1114210:CDS
CTTTGCAGATATGTTAATGA+TGG 0.480696 7_3:-60961725 Msa1114210:intron
TTCCTCCGCCGCAGCTGTGG+TGG 0.487008 7_3:-60962769 Msa1114210:CDS
AAAGAGAAAATAATAATTGA+GGG 0.494961 7_3:-60963160 Msa1114210:five_prime_UTR
GAAAGAGAAAATAATAATTG+AGG 0.497150 7_3:-60963161 Msa1114210:five_prime_UTR
GGGCATTAAACTGTGATGAT+TGG 0.499814 7_3:-60961393 Msa1114210:CDS
TCTTCACATTGGAAATGAGT+TGG 0.503588 7_3:+60962891 None:intergenic
TGATCGTCGCAATGATATAT+GGG 0.508373 7_3:-60959458 Msa1114210:CDS
TTCAAAGCTCTTAGAAACTC+AGG 0.510990 7_3:-60961469 Msa1114210:CDS
AATCCAAGTCACTCACCAAA+TGG 0.515543 7_3:-60962818 Msa1114210:CDS
AAATATCGATTCCGTGCGAT+GGG 0.517137 7_3:-60962956 Msa1114210:five_prime_UTR
CATTTATTAAAGGATGTATG+TGG 0.521449 7_3:+60963040 None:intergenic
ACGCAGGTAGCACAGAGGAT+CGG 0.524810 7_3:-60958768 Msa1114210:intron
ACCTGAGCCATGGGTTGAGA+AGG 0.526827 7_3:+60962627 None:intergenic
TCGCAATGATATATGGGTGC+AGG 0.530403 7_3:-60959452 Msa1114210:CDS
GGCTGTGATGCATGGCTTTG+GGG 0.533409 7_3:-60959431 Msa1114210:CDS
TAAATATCGATTCCGTGCGA+TGG 0.535296 7_3:-60962957 Msa1114210:five_prime_UTR
TGTTCTTAGCTTCTTCACAT+TGG 0.537128 7_3:+60962880 None:intergenic
TTAGATATATAGAACGATTG+GGG 0.538472 7_3:-60962528 Msa1114210:intron
ATTATGTTAATATCATAAAA+CGG 0.538831 7_3:-60963357 Msa1114210:five_prime_UTR
AGCTGCGGCGGAGGAAGTGG+AGG 0.539047 7_3:+60962776 None:intergenic
CCTGAGGATGCTGTTCATGT+TGG 0.541192 7_3:-60959484 Msa1114210:CDS
CTTGGGGTAAATCTCGTCTC+AGG 0.541735 7_3:-60962439 Msa1114210:intron
TTCTTCAGCCACCACAGCTG+CGG 0.544992 7_3:+60962761 None:intergenic
CAGTTTAATGCCCGCAAGAG+AGG 0.545810 7_3:+60961403 None:intergenic
TTCAGCCACCACAGCTGCGG+CGG 0.545958 7_3:+60962764 None:intergenic
GAAGAGCTTATAGTCAACCT+TGG 0.555689 7_3:-60962457 Msa1114210:CDS
TGAAGCAGAAATGAAGGTGT+AGG 0.564415 7_3:-60958603 Msa1114210:three_prime_UTR
TACATAGTGAGTAACTCTAC+TGG 0.569540 7_3:-60961686 Msa1114210:CDS
CCAACATGAACAGCATCCTC+AGG 0.569555 7_3:+60959484 None:intergenic
CTGAGACGAGATTTACCCCA+AGG 0.582915 7_3:+60962440 None:intergenic
TTTAGAACGAATTATTCCAC+CGG 0.583210 7_3:+60958498 None:intergenic
TGGAGGAGTATGACGGTGAA+CGG 0.586447 7_3:+60962793 None:intergenic
TGGGTGCAGGCTGTGATGCA+TGG 0.587278 7_3:-60959439 Msa1114210:CDS
TAAACATGCTTTCTCAGACC+TGG 0.591029 7_3:+60958742 None:intergenic
CTCGGTTAAGACCTCTCTTG+CGG 0.592040 7_3:-60961414 Msa1114210:CDS
GCAGAAATGAAGGTGTAGGT+AGG 0.598752 7_3:-60958599 Msa1114210:three_prime_UTR
TGAATGAATTACCTGAGCCA+TGG 0.611058 7_3:+60962617 None:intergenic
GAATGAATTACCTGAGCCAT+GGG 0.613187 7_3:+60962618 None:intergenic
CTTCTGTGTTAGGATCACAT+AGG 0.622443 7_3:+60961497 None:intergenic
GTATGGTGTGAATTATTCAG+AGG 0.623470 7_3:-60962501 Msa1114210:CDS
AACTTGTGAAGCAGAAATGA+AGG 0.630305 7_3:-60958609 Msa1114210:three_prime_UTR
TTCGTTATTTCTACGTGACA+CGG 0.634315 7_3:+60962991 None:intergenic
GAGGAAGTGGAGGAGTATGA+CGG 0.636032 7_3:+60962786 None:intergenic
TGAGGATGCTGTTCATGTTG+GGG 0.639896 7_3:-60959482 Msa1114210:CDS
ATACAAACACTCCCATCGCA+CGG 0.652236 7_3:+60962945 None:intergenic
TGCTGTAGCAGTATCAGCTG+AGG 0.669977 7_3:-60961365 Msa1114210:intron
ATGTGAAGAAGCTAAGAACA+TGG 0.672517 7_3:-60962877 Msa1114210:exon
TAATAAATAAAATAAACCGG+TGG 0.674474 7_3:-60958514 Msa1114210:three_prime_UTR
GTATGAAACATGTGAACGAG+TGG 0.682684 7_3:-60962926 Msa1114210:five_prime_UTR
GCAGGTAGCACAGAGGATCG+GGG 0.685395 7_3:-60958766 Msa1114210:intron
AGAGCTTATAGTCAACCTTG+GGG 0.721676 7_3:-60962455 Msa1114210:CDS
TAACTACTATATGACTGACA+AGG 0.733651 7_3:-60961630 Msa1114210:intron
ACTATTGGATGTAAAACCTG+AGG 0.738416 7_3:-60959500 Msa1114210:CDS
TGCTGACGCAGGTAGCACAG+AGG 0.743794 7_3:-60958773 Msa1114210:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATAATATTTTTTTTATAA+TGG + chr7_3:60958747-60958766 None:intergenic 0.0%
!! ATAAAATTTATATTTATATA+TGG + chr7_3:60963158-60963177 None:intergenic 0.0%
!!! TTATTATACATTTTAGAAAA+AGG + chr7_3:60960265-60960284 None:intergenic 10.0%
!!! AAATTTTATTAATAGTGTTT+AGG - chr7_3:60963169-60963188 Msa1114210:five_prime_UTR 10.0%
!! AAAGAGAAAATAATAATTGA+GGG - chr7_3:60958691-60958710 Msa1114210:three_prime_UTR 15.0%
!!! TTTTTATAATGGTAATTGAA+GGG + chr7_3:60958736-60958755 None:intergenic 15.0%
!!! TTTTTTATAATGGTAATTGA+AGG + chr7_3:60958737-60958756 None:intergenic 15.0%
!! ATCTTGTATTCATTTATTAA+AGG + chr7_3:60958824-60958843 None:intergenic 15.0%
!! TTTATATTAGAGATTATCAA+TGG - chr7_3:60959573-60959592 Msa1114210:intron 15.0%
!! AAAATAATGAAATCTTATGA+AGG - chr7_3:60960827-60960846 Msa1114210:intron 15.0%
!! TTATACATAAAAAGCTTAAT+AGG - chr7_3:60960948-60960967 Msa1114210:intron 15.0%
!! TAAAGCCTATTTAATTAAAT+AGG + chr7_3:60961019-60961038 None:intergenic 15.0%
!! TAGTATAATAAAACATTTGA+GGG + chr7_3:60961223-60961242 None:intergenic 15.0%
!! TTAGTATAATAAAACATTTG+AGG + chr7_3:60961224-60961243 None:intergenic 15.0%
!! GAAAGAGAAAATAATAATTG+AGG - chr7_3:60958690-60958709 Msa1114210:three_prime_UTR 20.0%
!!! TTTTAGATATATAGAACGAT+TGG - chr7_3:60959321-60959340 Msa1114210:intron 20.0%
!! TTTAGATATATAGAACGATT+GGG - chr7_3:60959322-60959341 Msa1114210:intron 20.0%
!! AAGTATATGAATTGAATGAA+AGG + chr7_3:60959449-60959468 None:intergenic 20.0%
!!! TCACTCTAGATTTTTTTTTA+TGG - chr7_3:60959871-60959890 Msa1114210:intron 20.0%
!!! CACTCTAGATTTTTTTTTAT+GGG - chr7_3:60959872-60959891 Msa1114210:intron 20.0%
!! GTTTAATGATTTGAAGAAAA+AGG + chr7_3:60960014-60960033 None:intergenic 20.0%
!!! TGAGTAGGATTTTATTTTTT+TGG - chr7_3:60960306-60960325 Msa1114210:intron 20.0%
!! CAAACTGATAAAACAAAATA+CGG + chr7_3:60960537-60960556 None:intergenic 20.0%
!!! TGTAAAATAGGCTTTTAAAT+AGG + chr7_3:60960723-60960742 None:intergenic 20.0%
!! TTATTTAGTAGCACATATAT+TGG + chr7_3:60960863-60960882 None:intergenic 20.0%
!! CTAAATAAACAATCATATGA+AGG - chr7_3:60960875-60960894 Msa1114210:intron 20.0%
!! AGTATAATAAAACATTTGAG+GGG + chr7_3:60961222-60961241 None:intergenic 20.0%
!! TAATGATAAAAAACATGTTC+AGG + chr7_3:60961405-60961424 None:intergenic 20.0%
!! AAATTGGGTGAAAATTTAAA+TGG - chr7_3:60961965-60961984 Msa1114210:intron 20.0%
!! AATTGGGTGAAAATTTAAAT+GGG - chr7_3:60961966-60961985 Msa1114210:intron 20.0%
!! AAATTTAAATAACTGTCAAG+AGG + chr7_3:60962113-60962132 None:intergenic 20.0%
!! CATATACATTAAATGTGATA+TGG + chr7_3:60962251-60962270 None:intergenic 20.0%
!! TTAATGTATATGTGAATGAT+TGG - chr7_3:60962259-60962278 Msa1114210:intron 20.0%
!!! CCTACATAAGAAAAAATTTT+GGG + chr7_3:60962578-60962597 None:intergenic 20.0%
!!! ACCTACATAAGAAAAAATTT+TGG + chr7_3:60962579-60962598 None:intergenic 20.0%
!!! TAATAATAGTTGGATTTTGA+TGG + chr7_3:60962672-60962691 None:intergenic 20.0%
!! TTATAAAATAGTCATACCAA+TGG + chr7_3:60962696-60962715 None:intergenic 20.0%
!!! ATAGCATAGTTTCTATTTTT+TGG + chr7_3:60962867-60962886 None:intergenic 20.0%
!! TGCTATTCTATAACAAATTT+AGG - chr7_3:60962881-60962900 Msa1114210:five_prime_UTR 20.0%
!! GCTATTCTATAACAAATTTA+GGG - chr7_3:60962882-60962901 Msa1114210:five_prime_UTR 20.0%
!! CTATTCTATAACAAATTTAG+GGG - chr7_3:60962883-60962902 Msa1114210:five_prime_UTR 20.0%
!! TAATAAATAAAATAAACCGG+TGG - chr7_3:60963337-60963356 Msa1114210:five_prime_UTR 20.0%
!! AAGGGTGTATGTAATAAAAT+AGG + chr7_3:60958718-60958737 None:intergenic 25.0%
! CATTTATTAAAGGATGTATG+TGG + chr7_3:60958814-60958833 None:intergenic 25.0%
! GATTATAGAAGATCTCTTTA+CGG - chr7_3:60959149-60959168 Msa1114210:intron 25.0%
! TTAGATATATAGAACGATTG+GGG - chr7_3:60959323-60959342 Msa1114210:intron 25.0%
! TTCTTTGGATTGAAAATTTC+TGG - chr7_3:60959598-60959617 Msa1114210:intron 25.0%
!!! AAAATGCTATTTCAATGGTT+TGG - chr7_3:60959655-60959674 Msa1114210:intron 25.0%
! TCTCTAACTCATTGTATTAA+AGG - chr7_3:60959742-60959761 Msa1114210:intron 25.0%
! CTCTAACTCATTGTATTAAA+GGG - chr7_3:60959743-60959762 Msa1114210:intron 25.0%
! TCCCAGAAATAAAAATGTAA+GGG - chr7_3:60959775-60959794 Msa1114210:intron 25.0%
!!! TCCCTTACATTTTTATTTCT+GGG + chr7_3:60959779-60959798 None:intergenic 25.0%
! AAAAATGTAAGGGACTAATT+TGG - chr7_3:60959785-60959804 Msa1114210:intron 25.0%
! AAAATGTAAGGGACTAATTT+GGG - chr7_3:60959786-60959805 Msa1114210:intron 25.0%
! TAATGATTTGAAGAAAAAGG+AGG + chr7_3:60960011-60960030 None:intergenic 25.0%
!!! TTTTAGAAAAAGGTACCTAT+TGG + chr7_3:60960255-60960274 None:intergenic 25.0%
! GTTAGACTTTAGTGTAAAAT+AGG + chr7_3:60960735-60960754 None:intergenic 25.0%
! ATGTAAACCTACTACTAAAT+AGG - chr7_3:60960760-60960779 Msa1114210:intron 25.0%
! GACTACTATATACTATAAGT+TGG + chr7_3:60961257-60961276 None:intergenic 25.0%
! AATACAAAAAACAATGGTTG+AGG + chr7_3:60961323-60961342 None:intergenic 25.0%
!! TTTTTCTTGAATATTCAGTG+CGG + chr7_3:60961347-60961366 None:intergenic 25.0%
! AAAGTATATGTACATGTATC+TGG - chr7_3:60961471-60961490 Msa1114210:CDS 25.0%
!!! ATTTCTTTCCCAAGATTTTT+TGG + chr7_3:60961575-60961594 None:intergenic 25.0%
! AAAAAATCTTGGGAAAGAAA+TGG - chr7_3:60961574-60961593 Msa1114210:intron 25.0%
!! ACAATTCTAAGAATTGCATT+GGG + chr7_3:60961809-60961828 None:intergenic 25.0%
!! TACAATTCTAAGAATTGCAT+TGG + chr7_3:60961810-60961829 None:intergenic 25.0%
! TGCAATTCTTAGAATTGTAT+TGG - chr7_3:60961811-60961830 Msa1114210:intron 25.0%
! AATTCTTAGAATTGTATTGG+AGG - chr7_3:60961814-60961833 Msa1114210:intron 25.0%
! TGAGGAAAATTGAAGTAAAT+TGG - chr7_3:60961949-60961968 Msa1114210:intron 25.0%
! GAGGAAAATTGAAGTAAATT+GGG - chr7_3:60961950-60961969 Msa1114210:intron 25.0%
! ATTGGGTGAAAATTTAAATG+GGG - chr7_3:60961967-60961986 Msa1114210:intron 25.0%
! ATTGTTGCTCAAATGTATTT+GGG + chr7_3:60962154-60962173 None:intergenic 25.0%
!! GCATTTGAATAATGATTTTG+CGG - chr7_3:60962174-60962193 Msa1114210:intron 25.0%
! TTCAGAAATATAGTTGGATT+TGG + chr7_3:60962322-60962341 None:intergenic 25.0%
!! CAAGGATAAGGAAATTTTAT+TGG - chr7_3:60962501-60962520 Msa1114210:CDS 25.0%
!! ACATAAGAAAAAATTTTGGG+AGG + chr7_3:60962575-60962594 None:intergenic 25.0%
!!! CCCAAAATTTTTTCTTATGT+AGG - chr7_3:60962575-60962594 Msa1114210:intron 25.0%
! TCTATACAATATACACAACT+GGG + chr7_3:60962644-60962663 None:intergenic 25.0%
! TTCTATACAATATACACAAC+TGG + chr7_3:60962645-60962664 None:intergenic 25.0%
! GTTGTGTATATTGTATAGAA+TGG - chr7_3:60962645-60962664 Msa1114210:CDS 25.0%
! ATCCAACTATTATTAACCAT+TGG - chr7_3:60962677-60962696 Msa1114210:CDS 25.0%
! TACCAATGGTTAATAATAGT+TGG + chr7_3:60962682-60962701 None:intergenic 25.0%
!!! TTTCTATTTTTTGGCTAACT+GGG + chr7_3:60962858-60962877 None:intergenic 25.0%
! TATAACAAATTTAGGGGAAA+CGG - chr7_3:60962889-60962908 Msa1114210:five_prime_UTR 25.0%
!!! ACAGATTTTCTAAAGTTACA+AGG - chr7_3:60963309-60963328 Msa1114210:five_prime_UTR 25.0%
!! TTTTATCTCTCGTCTTATTG+TGG + chr7_3:60958643-60958662 None:intergenic 30.0%
AGATTATCAATGGCTTTCTT+TGG - chr7_3:60959583-60959602 Msa1114210:intron 30.0%
! CCATTGAAATAGCATTTTGA+AGG + chr7_3:60959653-60959672 None:intergenic 30.0%
!! CCTTCAAAATGCTATTTCAA+TGG - chr7_3:60959650-60959669 Msa1114210:intron 30.0%
GTCCCAGAAATAAAAATGTA+AGG - chr7_3:60959774-60959793 Msa1114210:intron 30.0%
!! GTCCCTTACATTTTTATTTC+TGG + chr7_3:60959780-60959799 None:intergenic 30.0%
!! GACTAATTTGGGTTTACTTT+TGG - chr7_3:60959797-60959816 Msa1114210:intron 30.0%
!!! TGTGTTTTTTTAGTACCTAC+TGG - chr7_3:60959933-60959952 Msa1114210:intron 30.0%
TTCTGTTACATTTATCCAGT+AGG + chr7_3:60959951-60959970 None:intergenic 30.0%
CTTTGCAGATATGTTAATGA+TGG - chr7_3:60960126-60960145 Msa1114210:intron 30.0%
TAACTACTATATGACTGACA+AGG - chr7_3:60960221-60960240 Msa1114210:intron 30.0%
!! TTGTGTCAAATTTTGACACT+CGG - chr7_3:60960419-60960438 Msa1114210:intron 30.0%
!!! TATAATTTTTGAAGTAGGCC+AGG + chr7_3:60960616-60960635 None:intergenic 30.0%
TGGCCTACTTCAAAAATTAT+AGG - chr7_3:60960615-60960634 Msa1114210:intron 30.0%
!!! AGGCCTATAATTTTTGAAGT+AGG + chr7_3:60960621-60960640 None:intergenic 30.0%
!! ATTTTGGCCTATTTAGTAGT+AGG + chr7_3:60960770-60960789 None:intergenic 30.0%
AAATAGGCCAAAATTTACGA+AGG - chr7_3:60960776-60960795 Msa1114210:intron 30.0%
! CTTTATGCCTTCGTAAATTT+TGG + chr7_3:60960786-60960805 None:intergenic 30.0%
ACATAAAAAGCTTAATAGGC+CGG - chr7_3:60960952-60960971 Msa1114210:intron 30.0%
AAAAGCCTATTAAGTCTGTT+GGG + chr7_3:60960978-60960997 None:intergenic 30.0%
CCTATTTAATTAAATAGGCC+AGG + chr7_3:60961014-60961033 None:intergenic 30.0%
CCTGGCCTATTTAATTAAAT+AGG - chr7_3:60961011-60961030 Msa1114210:intron 30.0%
TAGTCATAACTTACTCACTT+TGG - chr7_3:60961272-60961291 Msa1114210:intron 30.0%
AGTCATAACTTACTCACTTT+GGG - chr7_3:60961273-60961292 Msa1114210:intron 30.0%
TGCGGAAATACAAAAAACAA+TGG + chr7_3:60961329-60961348 None:intergenic 30.0%
ACAAGAAAATGAATCTTCCA+AGG - chr7_3:60961369-60961388 Msa1114210:CDS 30.0%
!!! AGCTTGCATAGATTTTTTGA+GGG + chr7_3:60961499-60961518 None:intergenic 30.0%
GTTTCAAATGTAAGCATGTT+TGG + chr7_3:60961903-60961922 None:intergenic 30.0%
! CATGCTTACATTTGAAACAA+TGG - chr7_3:60961905-60961924 Msa1114210:intron 30.0%
AATTTAAATGGGGACTTTGA+TGG - chr7_3:60961977-60961996 Msa1114210:intron 30.0%
CAACTCCTCAAAGTTAATAT+TGG + chr7_3:60962073-60962092 None:intergenic 30.0%
TTGTTGCTCAAATGTATTTG+GGG + chr7_3:60962153-60962172 None:intergenic 30.0%
CATTGTTGCTCAAATGTATT+TGG + chr7_3:60962155-60962174 None:intergenic 30.0%
AATGTGATATGGAACAGAAA+AGG + chr7_3:60962240-60962259 None:intergenic 30.0%
! AAGTGATGTTCACTCTTTTA+AGG - chr7_3:60962443-60962462 Msa1114210:CDS 30.0%
! TCATCTCTTTTTGATACACA+AGG - chr7_3:60962483-60962502 Msa1114210:CDS 30.0%
! CTTTTTGATACACAAGGATA+AGG - chr7_3:60962489-60962508 Msa1114210:CDS 30.0%
! AAGGAAATTTTATTGGAGAG+TGG - chr7_3:60962508-60962527 Msa1114210:CDS 30.0%
! CAGCAGTAACAATCAATTTT+GGG + chr7_3:60962606-60962625 None:intergenic 30.0%
CAAAATTGATTGTTACTGCT+GGG - chr7_3:60962605-60962624 Msa1114210:intron 30.0%
TATTGGGAATTTGGTATCTA+AGG + chr7_3:60962827-60962846 None:intergenic 30.0%
!!! TTCTATTTTTTGGCTAACTG+GGG + chr7_3:60962857-60962876 None:intergenic 30.0%
!!! GTTTCTATTTTTTGGCTAAC+TGG + chr7_3:60962859-60962878 None:intergenic 30.0%
ATAACAAATTTAGGGGAAAC+GGG - chr7_3:60962890-60962909 Msa1114210:five_prime_UTR 30.0%
ACAACTAAATTTGTCAGACA+GGG + chr7_3:60962918-60962937 None:intergenic 30.0%
AACAACTAAATTTGTCAGAC+AGG + chr7_3:60962919-60962938 None:intergenic 30.0%
! GCTTTTATACTTGACTTCAT+CGG - chr7_3:60963276-60963295 Msa1114210:five_prime_UTR 30.0%
! TTTAGAACGAATTATTCCAC+CGG + chr7_3:60963356-60963375 None:intergenic 30.0%
!! TTCGTTATTTCTACGTGACA+CGG + chr7_3:60958863-60958882 None:intergenic 35.0%
TCTTCACATTGGAAATGAGT+TGG + chr7_3:60958963-60958982 None:intergenic 35.0%
TGTTCTTAGCTTCTTCACAT+TGG + chr7_3:60958974-60958993 None:intergenic 35.0%
ATGTGAAGAAGCTAAGAACA+TGG - chr7_3:60958974-60958993 Msa1114210:intron 35.0%
GTATGGTGTGAATTATTCAG+AGG - chr7_3:60959350-60959369 Msa1114210:intron 35.0%
AAGAGCTTATAGTCAACCTT+GGG - chr7_3:60959395-60959414 Msa1114210:intron 35.0%
CCAATTTGAAAGACTGAACT+GGG + chr7_3:60959711-60959730 None:intergenic 35.0%
TCCAATTTGAAAGACTGAAC+TGG + chr7_3:60959712-60959731 None:intergenic 35.0%
!! ATTTGGGTTTACTTTTGGTC+AGG - chr7_3:60959802-60959821 Msa1114210:intron 35.0%
!! TTTGGGTTTACTTTTGGTCA+GGG - chr7_3:60959803-60959822 Msa1114210:intron 35.0%
AAAATTGTGAGCGACTGATT+TGG - chr7_3:60959844-60959863 Msa1114210:intron 35.0%
!! TTTTTATGGGTCTGACTTGT+TGG - chr7_3:60959885-60959904 Msa1114210:intron 35.0%
!!! TTTTATGGGTCTGACTTGTT+GGG - chr7_3:60959886-60959905 Msa1114210:intron 35.0%
TTAATGATGGTAGACCTTTC+TGG - chr7_3:60960139-60960158 Msa1114210:intron 35.0%
TACATAGTGAGTAACTCTAC+TGG - chr7_3:60960165-60960184 Msa1114210:intron 35.0%
!! TAGAAAAAGGTACCTATTGG+AGG + chr7_3:60960252-60960271 None:intergenic 35.0%
!! TTTCTGTTTTCAAGCTGAGT+AGG - chr7_3:60960291-60960310 Msa1114210:intron 35.0%
TTTGGCATATTATCATCCAC+AGG - chr7_3:60960324-60960343 Msa1114210:intron 35.0%
TTGAACACTTCTTCTGTGTT+AGG + chr7_3:60960367-60960386 None:intergenic 35.0%
TTCAAAGCTCTTAGAAACTC+AGG - chr7_3:60960382-60960401 Msa1114210:intron 35.0%
TAGAAACTCAGGTGTGAAAT+TGG - chr7_3:60960393-60960412 Msa1114210:intron 35.0%
! AGGCTTTTAAATAGGCTTTC+AGG + chr7_3:60960715-60960734 None:intergenic 35.0%
GAAAAGCCTATTAAGTCTGT+TGG + chr7_3:60960979-60960998 None:intergenic 35.0%
TAATTAAATAGGCCAGGCTA+AGG + chr7_3:60961008-60961027 None:intergenic 35.0%
ACCTTGTTAATAAACGAGCT+GGG - chr7_3:60961056-60961075 Msa1114210:intron 35.0%
TAGCATGCATCAATAGATGA+GGG + chr7_3:60961168-60961187 None:intergenic 35.0%
AAAAAACAATGGTTGAGGAG+TGG + chr7_3:60961318-60961337 None:intergenic 35.0%
!!! GAGCTTGCATAGATTTTTTG+AGG + chr7_3:60961500-60961519 None:intergenic 35.0%
TCATCACTGCCAAAAAATCT+TGG - chr7_3:60961563-60961582 Msa1114210:intron 35.0%
CATCACTGCCAAAAAATCTT+GGG - chr7_3:60961564-60961583 Msa1114210:intron 35.0%
AAATCTTGGGAAAGAAATGG+TGG - chr7_3:60961577-60961596 Msa1114210:intron 35.0%
ACATCTTGCAGAAACATGTT+AGG - chr7_3:60961633-60961652 Msa1114210:CDS 35.0%
CTTCACAGTTGACATATTTG+TGG + chr7_3:60961749-60961768 None:intergenic 35.0%
TCTTAGAATTGTATTGGAGG+AGG - chr7_3:60961817-60961836 Msa1114210:intron 35.0%
! TAAGCATGTTTGGTTCAATG+GGG + chr7_3:60961893-60961912 None:intergenic 35.0%
! GTAAGCATGTTTGGTTCAAT+GGG + chr7_3:60961894-60961913 None:intergenic 35.0%
! TGTAAGCATGTTTGGTTCAA+TGG + chr7_3:60961895-60961914 None:intergenic 35.0%
TATCGTATTGCATGCAATTG+AGG - chr7_3:60961931-60961950 Msa1114210:intron 35.0%
GCATCATTCAATAGATTCTG+TGG - chr7_3:60962034-60962053 Msa1114210:intron 35.0%
TGCTGCCAATATTAACTTTG+AGG - chr7_3:60962065-60962084 Msa1114210:intron 35.0%
TGCTTCAACCTGTATGAAAT+AGG + chr7_3:60962293-60962312 None:intergenic 35.0%
CACGCTTTCAGAAATATAGT+TGG + chr7_3:60962328-60962347 None:intergenic 35.0%
ACTATTGGATGTAAAACCTG+AGG - chr7_3:60962351-60962370 Msa1114210:intron 35.0%
ATGATCGTCGCAATGATATA+TGG - chr7_3:60962392-60962411 Msa1114210:intron 35.0%
TGATCGTCGCAATGATATAT+GGG - chr7_3:60962393-60962412 Msa1114210:intron 35.0%
!! TGATGTTCACTCTTTTAAGG+AGG - chr7_3:60962446-60962465 Msa1114210:CDS 35.0%
! CAGTAACAATCAATTTTGGG+AGG + chr7_3:60962603-60962622 None:intergenic 35.0%
! CCAGCAGTAACAATCAATTT+TGG + chr7_3:60962607-60962626 None:intergenic 35.0%
CCAAAATTGATTGTTACTGC+TGG - chr7_3:60962604-60962623 Msa1114210:intron 35.0%
AATCAAGGGACTGTATAGAA+TGG + chr7_3:60962780-60962799 None:intergenic 35.0%
ATTGACATGTGGGAAATCAA+GGG + chr7_3:60962794-60962813 None:intergenic 35.0%
AATTGACATGTGGGAAATCA+AGG + chr7_3:60962795-60962814 None:intergenic 35.0%
AGAAGGAGAAATTGACATGT+GGG + chr7_3:60962804-60962823 None:intergenic 35.0%
GAATTTGGTATCTAAGGAGA+AGG + chr7_3:60962821-60962840 None:intergenic 35.0%
AGATACCAAATTCCCAATAG+AGG - chr7_3:60962828-60962847 Msa1114210:CDS 35.0%
TAACAAATTTAGGGGAAACG+GGG - chr7_3:60962891-60962910 Msa1114210:five_prime_UTR 35.0%
! AGTGTTTAGGCTTTAGTTAC+AGG - chr7_3:60963182-60963201 Msa1114210:five_prime_UTR 35.0%
AACTTGTGAAGCAGAAATGA+AGG - chr7_3:60963242-60963261 Msa1114210:five_prime_UTR 35.0%
CGCACGGAATCGATATTTAA+CGG + chr7_3:60958893-60958912 None:intergenic 40.0%
!! TAAATATCGATTCCGTGCGA+TGG - chr7_3:60958894-60958913 Msa1114210:intron 40.0%
!! AAATATCGATTCCGTGCGAT+GGG - chr7_3:60958895-60958914 Msa1114210:intron 40.0%
GTATGAAACATGTGAACGAG+TGG - chr7_3:60958925-60958944 Msa1114210:intron 40.0%
! TTTGGTGAGTGACTTGGATT+TGG + chr7_3:60959033-60959052 None:intergenic 40.0%
AATCCAAGTCACTCACCAAA+TGG - chr7_3:60959033-60959052 Msa1114210:intron 40.0%
GAATGAATTACCTGAGCCAT+GGG + chr7_3:60959236-60959255 None:intergenic 40.0%
TGAATGAATTACCTGAGCCA+TGG + chr7_3:60959237-60959256 None:intergenic 40.0%
GAAGAGCTTATAGTCAACCT+TGG - chr7_3:60959394-60959413 Msa1114210:intron 40.0%
AGAGCTTATAGTCAACCTTG+GGG - chr7_3:60959396-60959415 Msa1114210:intron 40.0%
!!! GGATTTTGATTTTGCCCTGT+TGG - chr7_3:60959619-60959638 Msa1114210:intron 40.0%
!! TGAAGGTACTTTCACCAACA+GGG + chr7_3:60959636-60959655 None:intergenic 40.0%
!! TTGAAGGTACTTTCACCAAC+AGG + chr7_3:60959637-60959656 None:intergenic 40.0%
CCCAGTTCAGTCTTTCAAAT+TGG - chr7_3:60959708-60959727 Msa1114210:intron 40.0%
! GTCGCTCACAATTTTCTTGT+GGG + chr7_3:60959839-60959858 None:intergenic 40.0%
! AGTCGCTCACAATTTTCTTG+TGG + chr7_3:60959840-60959859 None:intergenic 40.0%
CTCACTATGTATTGCCAGAA+AGG + chr7_3:60960156-60960175 None:intergenic 40.0%
CATATTATCATCCACAGGCA+TGG - chr7_3:60960329-60960348 Msa1114210:intron 40.0%
CTTCTGTGTTAGGATCACAT+AGG + chr7_3:60960357-60960376 None:intergenic 40.0%
GGGCATTAAACTGTGATGAT+TGG - chr7_3:60960458-60960477 Msa1114210:intron 40.0%
AAAAATTATAGGCCTGAGCC+TGG - chr7_3:60960626-60960645 Msa1114210:intron 40.0%
AATAGGCTTTCAGGCTTCAT+CGG + chr7_3:60960706-60960725 None:intergenic 40.0%
GCTCGTTTATTAACAAGGTC+AGG + chr7_3:60961055-60961074 None:intergenic 40.0%
GACCTTGTTAATAAACGAGC+TGG - chr7_3:60961055-60961074 Msa1114210:intron 40.0%
! AGCCTATTTAAAGCCTAGCT+CGG + chr7_3:60961082-60961101 None:intergenic 40.0%
!! AGCTAGGCTTTAAATAGGCT+AGG - chr7_3:60961082-60961101 Msa1114210:intron 40.0%
CTTTAAATAGGCTAGGCCAT+AGG - chr7_3:60961089-60961108 Msa1114210:intron 40.0%
AGCATGCATCAATAGATGAG+GGG + chr7_3:60961167-60961186 None:intergenic 40.0%
CTAGCATGCATCAATAGATG+AGG + chr7_3:60961169-60961188 None:intergenic 40.0%
! TGCATGCTAGTATTTCTGCA+TGG - chr7_3:60961179-60961198 Msa1114210:intron 40.0%
! ATGCTAGTATTTCTGCATGG+CGG - chr7_3:60961182-60961201 Msa1114210:intron 40.0%
TAACTTTCCACCATCACACT+TGG - chr7_3:60961423-60961442 Msa1114210:CDS 40.0%
AACAAATGAGCCAAGTGTGA+TGG + chr7_3:60961436-60961455 None:intergenic 40.0%
! TGGCTCATTTGTTGACAACA+CGG - chr7_3:60961443-60961462 Msa1114210:CDS 40.0%
! AAGCATGTTTGGTTCAATGG+GGG + chr7_3:60961892-60961911 None:intergenic 40.0%
TATGCCTGCCTATTTCATAC+AGG - chr7_3:60962282-60962301 Msa1114210:intron 40.0%
TCAACCTGTATGAAATAGGC+AGG + chr7_3:60962289-60962308 None:intergenic 40.0%
! TCTGAAAGCGTGTGAACTAT+TGG - chr7_3:60962336-60962355 Msa1114210:intron 40.0%
!! AGGATGTTTTATTCTCCCCT+AGG + chr7_3:60962555-60962574 None:intergenic 40.0%
AATTGATTGTTACTGCTGGG+TGG - chr7_3:60962608-60962627 Msa1114210:intron 40.0%
ATTGATTGTTACTGCTGGGT+GGG - chr7_3:60962609-60962628 Msa1114210:intron 40.0%
CAAAAAGTCCAAAACTCACG+AGG - chr7_3:60962753-60962772 Msa1114210:CDS 40.0%
GAGAAGGAGAAATTGACATG+TGG + chr7_3:60962805-60962824 None:intergenic 40.0%
TAAACATGCTTTCTCAGACC+TGG + chr7_3:60963112-60963131 None:intergenic 40.0%
! TGAAGCAGAAATGAAGGTGT+AGG - chr7_3:60963248-60963267 Msa1114210:five_prime_UTR 40.0%
ATACAAACACTCCCATCGCA+CGG + chr7_3:60958909-60958928 None:intergenic 45.0%
GCTCTTCTTGTTGATGCTGT+TGG - chr7_3:60959188-60959207 Msa1114210:intron 45.0%
TGTTCTTCCTTCTCAACCCA+TGG - chr7_3:60959217-60959236 Msa1114210:intron 45.0%
AGAACGATTGGGGAGAAGTA+TGG - chr7_3:60959333-60959352 Msa1114210:intron 45.0%
! GAGTAACTCTACTGGCTGTT+CGG - chr7_3:60960173-60960192 Msa1114210:intron 45.0%
GACAAGGTATGACCTCCAAT+AGG - chr7_3:60960237-60960256 Msa1114210:intron 45.0%
TATCAGTTTGTGTCACCGCT+AGG - chr7_3:60960547-60960566 Msa1114210:intron 45.0%
ATCAGTTTGTGTCACCGCTA+GGG - chr7_3:60960548-60960567 Msa1114210:intron 45.0%
!!! TTTTGAAGTAGGCCAGGCTT+AGG + chr7_3:60960610-60960629 None:intergenic 45.0%
!! ATGAGCCTATGACGGGTAAT+AGG + chr7_3:60960652-60960671 None:intergenic 45.0%
CTCGAAAATGAGCCTATGAC+GGG + chr7_3:60960659-60960678 None:intergenic 45.0%
CCTCGAAAATGAGCCTATGA+CGG + chr7_3:60960660-60960679 None:intergenic 45.0%
GCTTCATCGGGCCTTTAATT+AGG + chr7_3:60960693-60960712 None:intergenic 45.0%
ATAGGCTTTCAGGCTTCATC+GGG + chr7_3:60960705-60960724 None:intergenic 45.0%
! CTTTTCTGTAAGCCTTAGCC+TGG - chr7_3:60960993-60961012 Msa1114210:intron 45.0%
GCCCAGCTCGTTTATTAACA+AGG + chr7_3:60961060-60961079 None:intergenic 45.0%
CATGCATCAATAGATGAGGG+GGG + chr7_3:60961165-60961184 None:intergenic 45.0%
GCATGCATCAATAGATGAGG+GGG + chr7_3:60961166-60961185 None:intergenic 45.0%
! TGCTAGTATTTCTGCATGGC+GGG - chr7_3:60961183-60961202 Msa1114210:intron 45.0%
!! TAAAACATTTGAGGGGTGCC+AGG + chr7_3:60961215-60961234 None:intergenic 45.0%
TTACTCACTTTGGGTCAAGC+AGG - chr7_3:60961282-60961301 Msa1114210:intron 45.0%
TACTCACTTTGGGTCAAGCA+GGG - chr7_3:60961283-60961302 Msa1114210:intron 45.0%
AAATGAGCCAAGTGTGATGG+TGG + chr7_3:60961433-60961452 None:intergenic 45.0%
TCGATACAGTAAGTTCAGCG+AGG + chr7_3:60961522-60961541 None:intergenic 45.0%
CTGAGGATGCTGTTCATGTT+GGG - chr7_3:60962368-60962387 Msa1114210:intron 45.0%
TGAGGATGCTGTTCATGTTG+GGG - chr7_3:60962369-60962388 Msa1114210:intron 45.0%
TCGCAATGATATATGGGTGC+AGG - chr7_3:60962399-60962418 Msa1114210:intron 45.0%
TTGGAGAGTGGAGACTATAG+AGG - chr7_3:60962520-60962539 Msa1114210:CDS 45.0%
TGGAGAGTGGAGACTATAGA+GGG - chr7_3:60962521-60962540 Msa1114210:CDS 45.0%
TATAGAGGGTGAGAACACCT+AGG - chr7_3:60962535-60962554 Msa1114210:intron 45.0%
ATAGAGGGTGAGAACACCTA+GGG - chr7_3:60962536-60962555 Msa1114210:intron 45.0%
! AGAATGGTCCTCGTGAGTTT+TGG + chr7_3:60962764-60962783 None:intergenic 45.0%
GGAGACCTCTATTGGGAATT+TGG + chr7_3:60962836-60962855 None:intergenic 45.0%
TAACTGGGGAGACCTCTATT+GGG + chr7_3:60962843-60962862 None:intergenic 45.0%
! CTTGAATCTTTTGCTGACGC+AGG - chr7_3:60963067-60963086 Msa1114210:five_prime_UTR 45.0%
! GCAGAAATGAAGGTGTAGGT+AGG - chr7_3:60963252-60963271 Msa1114210:five_prime_UTR 45.0%
!! TATTAATAAATAAAATAAAC+CGG - chr7_3:60963334-60963353 Msa1114210:five_prime_UTR 5.0%
! GCACCATTTGGTGAGTGACT+TGG + chr7_3:60959039-60959058 None:intergenic 50.0%
! TGGAGGAGTATGACGGTGAA+CGG + chr7_3:60959061-60959080 None:intergenic 50.0%
! GAGGAAGTGGAGGAGTATGA+CGG + chr7_3:60959068-60959087 None:intergenic 50.0%
CTGAGACGAGATTTACCCCA+AGG + chr7_3:60959414-60959433 None:intergenic 50.0%
CTTGGGGTAAATCTCGTCTC+AGG - chr7_3:60959412-60959431 Msa1114210:CDS 50.0%
! CTTTTGGTCAGGGACTGAAC+TGG - chr7_3:60959813-60959832 Msa1114210:intron 50.0%
!! GTCTGACTTGTTGGGTTGAG+TGG - chr7_3:60959894-60959913 Msa1114210:intron 50.0%
CTCGGTTAAGACCTCTCTTG+CGG - chr7_3:60960437-60960456 Msa1114210:intron 50.0%
TCGGTTAAGACCTCTCTTGC+GGG - chr7_3:60960438-60960457 Msa1114210:intron 50.0%
CAGTTTAATGCCCGCAAGAG+AGG + chr7_3:60960451-60960470 None:intergenic 50.0%
TGCTGTAGCAGTATCAGCTG+AGG - chr7_3:60960486-60960505 Msa1114210:intron 50.0%
TCAGTTTGTGTCACCGCTAG+GGG - chr7_3:60960549-60960568 Msa1114210:intron 50.0%
TAGCCTATTTCCACCCCTAG+CGG + chr7_3:60960565-60960584 None:intergenic 50.0%
! CCGTCATAGGCTCATTTTCG+AGG - chr7_3:60960657-60960676 Msa1114210:intron 50.0%
GCCTGACCTGGCCTAATTAA+AGG - chr7_3:60960679-60960698 Msa1114210:intron 50.0%
GCCTTTAATTAGGCCAGGTC+AGG + chr7_3:60960683-60960702 None:intergenic 50.0%
ATCGGGCCTTTAATTAGGCC+AGG + chr7_3:60960688-60960707 None:intergenic 50.0%
GCCTATTAAGTCTGTTGGGC+CGG + chr7_3:60960974-60960993 None:intergenic 50.0%
!! GGCCGAGCTAGGCTTTAAAT+AGG - chr7_3:60961077-60961096 Msa1114210:intron 50.0%
GGAAGTGGAAAACATGCGGT+GGG + chr7_3:60961144-60961163 None:intergenic 50.0%
TCAATAGATGAGGGGGGAAG+TGG + chr7_3:60961159-60961178 None:intergenic 50.0%
! TAGTATTTCTGCATGGCGGG+TGG - chr7_3:60961186-60961205 Msa1114210:intron 50.0%
!! AGTATTTCTGCATGGCGGGT+GGG - chr7_3:60961187-60961206 Msa1114210:intron 50.0%
GTTCAGGCGAGTTTGAACCT+TGG + chr7_3:60961389-60961408 None:intergenic 50.0%
GAAGCAGCTTAGCATGACTC+TGG - chr7_3:60961839-60961858 Msa1114210:intron 50.0%
AACTGTCAAGAGGATCTCGC+AGG + chr7_3:60962103-60962122 None:intergenic 50.0%
CCAACATGAACAGCATCCTC+AGG + chr7_3:60962370-60962389 None:intergenic 50.0%
CCTGAGGATGCTGTTCATGT+TGG - chr7_3:60962367-60962386 Msa1114210:intron 50.0%
AGGCTGTGATGCATGGCTTT+GGG - chr7_3:60962419-60962438 Msa1114210:intron 50.0%
TAGAGGGTGAGAACACCTAG+GGG - chr7_3:60962537-60962556 Msa1114210:intron 50.0%
CTAACTGGGGAGACCTCTAT+TGG + chr7_3:60962844-60962863 None:intergenic 50.0%
TGACGGTGAACGGCACCATT+TGG + chr7_3:60959051-60959070 None:intergenic 55.0%
TTCTTCAGCCACCACAGCTG+CGG + chr7_3:60959093-60959112 None:intergenic 55.0%
TCCTTCTCAACCCATGGCTC+AGG - chr7_3:60959223-60959242 Msa1114210:intron 55.0%
! ACCTGAGCCATGGGTTGAGA+AGG + chr7_3:60959227-60959246 None:intergenic 55.0%
! TCACATAGGTGCCATGCCTG+TGG + chr7_3:60960343-60960362 None:intergenic 55.0%
TCACCGCTAGGGGTGGAAAT+AGG - chr7_3:60960559-60960578 Msa1114210:intron 55.0%
GCTAGGGGTGGAAATAGGCT+AGG - chr7_3:60960564-60960583 Msa1114210:intron 55.0%
GGCTTAGGCCTTACAAAGCC+CGG + chr7_3:60960595-60960614 None:intergenic 55.0%
! GGCTTTGTAAGGCCTAAGCC+TGG - chr7_3:60960595-60960614 Msa1114210:intron 55.0%
!! CCTATGACGGGTAATAGGCC+AGG + chr7_3:60960647-60960666 None:intergenic 55.0%
CCTGGCCTATTACCCGTCAT+AGG - chr7_3:60960644-60960663 Msa1114210:intron 55.0%
!! CTCATTTTCGAGGCCTGACC+TGG - chr7_3:60960667-60960686 Msa1114210:intron 55.0%
GCCGGCCCAACAGACTTAAT+AGG - chr7_3:60960970-60960989 Msa1114210:intron 55.0%
GTGGAAAACATGCGGTGGGT+GGG + chr7_3:60961140-60961159 None:intergenic 55.0%
AGTGGAAAACATGCGGTGGG+TGG + chr7_3:60961141-60961160 None:intergenic 55.0%
GGGAAGTGGAAAACATGCGG+TGG + chr7_3:60961145-60961164 None:intergenic 55.0%
GGGGGGAAGTGGAAAACATG+CGG + chr7_3:60961148-60961167 None:intergenic 55.0%
CAGGCTGTGATGCATGGCTT+TGG - chr7_3:60962418-60962437 Msa1114210:intron 55.0%
! GGCTGTGATGCATGGCTTTG+GGG - chr7_3:60962420-60962439 Msa1114210:intron 55.0%
ACGCAGGTAGCACAGAGGAT+CGG - chr7_3:60963083-60963102 Msa1114210:five_prime_UTR 55.0%
GTTTGTGTCACCGCTAGGGG+TGG - chr7_3:60960552-60960571 Msa1114210:intron 60.0%
GGGGTGGAAATAGGCTAGGC+CGG - chr7_3:60960568-60960587 Msa1114210:intron 60.0%
GGGTGGAAATAGGCTAGGCC+GGG - chr7_3:60960569-60960588 Msa1114210:intron 60.0%
ACGGGTAATAGGCCAGGCTC+AGG + chr7_3:60960641-60960660 None:intergenic 60.0%
TAAACGAGCTGGGCCGAGCT+AGG - chr7_3:60961066-60961085 Msa1114210:intron 60.0%
AACATGCGGTGGGTGGGAAC+AGG + chr7_3:60961134-60961153 None:intergenic 60.0%
TGGGTGCAGGCTGTGATGCA+TGG - chr7_3:60962412-60962431 Msa1114210:intron 60.0%
TGCTGACGCAGGTAGCACAG+AGG - chr7_3:60963078-60963097 Msa1114210:five_prime_UTR 60.0%
CGCAGGTAGCACAGAGGATC+GGG - chr7_3:60963084-60963103 Msa1114210:five_prime_UTR 60.0%
GCAGGTAGCACAGAGGATCG+GGG - chr7_3:60963085-60963104 Msa1114210:five_prime_UTR 60.0%
TTCAGCCACCACAGCTGCGG+CGG + chr7_3:60959090-60959109 None:intergenic 65.0%
GGAAATAGGCTAGGCCGGGC+CGG - chr7_3:60960573-60960592 Msa1114210:intron 65.0%
GAAATAGGCTAGGCCGGGCC+GGG - chr7_3:60960574-60960593 Msa1114210:intron 65.0%
AGGCCTTACAAAGCCCGGCC+CGG + chr7_3:60960590-60960609 None:intergenic 65.0%
GCTAGGCCATAGGCCCCTGT+CGG - chr7_3:60961099-60961118 Msa1114210:intron 65.0%
AGCACAGAGGATCGGGGTCC+AGG - chr7_3:60963091-60963110 Msa1114210:five_prime_UTR 65.0%
AGCTGCGGCGGAGGAAGTGG+AGG + chr7_3:60959078-60959097 None:intergenic 70.0%
CACAGCTGCGGCGGAGGAAG+TGG + chr7_3:60959081-60959100 None:intergenic 70.0%
CACTTCCTCCGCCGCAGCTG+TGG - chr7_3:60959079-60959098 Msa1114210:intron 70.0%
TTCCTCCGCCGCAGCTGTGG+TGG - chr7_3:60959082-60959101 Msa1114210:intron 70.0%
! AGGCCGGGCCGGGCTTTGTA+AGG - chr7_3:60960584-60960603 Msa1114210:intron 70.0%
GGCCATAGGCCCCTGTCGGA+CGG - chr7_3:60961103-60961122 Msa1114210:intron 70.0%
ACAGGCCAGGCCGTCCGACA+GGG + chr7_3:60961116-60961135 None:intergenic 70.0%
AACAGGCCAGGCCGTCCGAC+AGG + chr7_3:60961117-60961136 None:intergenic 70.0%
AGCCACCACAGCTGCGGCGG+AGG + chr7_3:60959087-60959106 None:intergenic 75.0%
GGCCGTCCGACAGGGGCCTA+TGG + chr7_3:60961108-60961127 None:intergenic 75.0%
TAGGCCCCTGTCGGACGGCC+TGG - chr7_3:60961108-60961127 Msa1114210:intron 75.0%
CAGGCCAGGCCGTCCGACAG+GGG + chr7_3:60961115-60961134 None:intergenic 75.0%
GCGGTGGGTGGGAACAGGCC+AGG + chr7_3:60961129-60961148 None:intergenic 75.0%
!! CTGCATGGCGGGTGGGAGCC+TGG - chr7_3:60961194-60961213 Msa1114210:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 60958497 60963376 60958497 ID=Msa1114210;Name=Msa1114210
chr7_3 mRNA 60958497 60963376 60958497 ID=Msa1114210-mRNA-1;Parent=Msa1114210;Name=Msa1114210-mRNA-1;_AED=0.07;_eAED=0.07;_QI=496|1|1|1|0.8|0.66|6|284|265
chr7_3 exon 60958497 60958784 60958497 ID=Msa1114210-mRNA-1:exon:13767;Parent=Msa1114210-mRNA-1
chr7_3 exon 60959406 60959569 60959406 ID=Msa1114210-mRNA-1:exon:13766;Parent=Msa1114210-mRNA-1
chr7_3 exon 60961366 60961527 60961366 ID=Msa1114210-mRNA-1:exon:13765;Parent=Msa1114210-mRNA-1
chr7_3 exon 60961631 60961739 60961631 ID=Msa1114210-mRNA-1:exon:13764;Parent=Msa1114210-mRNA-1
chr7_3 exon 60962440 60962546 60962440 ID=Msa1114210-mRNA-1:exon:13763;Parent=Msa1114210-mRNA-1
chr7_3 exon 60962629 60963376 60962629 ID=Msa1114210-mRNA-1:exon:13762;Parent=Msa1114210-mRNA-1
chr7_3 five_prime_UTR 60962881 60963376 60962881 ID=Msa1114210-mRNA-1:five_prime_utr;Parent=Msa1114210-mRNA-1
chr7_3 CDS 60962629 60962880 60962629 ID=Msa1114210-mRNA-1:cds;Parent=Msa1114210-mRNA-1
chr7_3 CDS 60962440 60962546 60962440 ID=Msa1114210-mRNA-1:cds;Parent=Msa1114210-mRNA-1
chr7_3 CDS 60961631 60961739 60961631 ID=Msa1114210-mRNA-1:cds;Parent=Msa1114210-mRNA-1
chr7_3 CDS 60961366 60961527 60961366 ID=Msa1114210-mRNA-1:cds;Parent=Msa1114210-mRNA-1
chr7_3 CDS 60959406 60959569 60959406 ID=Msa1114210-mRNA-1:cds;Parent=Msa1114210-mRNA-1
chr7_3 CDS 60958781 60958784 60958781 ID=Msa1114210-mRNA-1:cds;Parent=Msa1114210-mRNA-1
chr7_3 three_prime_UTR 60958497 60958780 60958497 ID=Msa1114210-mRNA-1:three_prime_utr;Parent=Msa1114210-mRNA-1
Gene Sequence

>Msa1114210

ATGGCAGTGATGAGTAGTTTCAGAAGCGTTCTTACTTCCAAATCCAAGTCACTCACCAAATGGTGCCGTTCACCGTCATACTCCTCCACTTCCTCCGCCGCAGCTGTGGTGGCTGAAGAACAACATGATAACAGCACTTATTTGAAAGATTATGCTGATTATAGAAGATCTCTTTACGGTAACATCACTCATAAAGCTCTTCTTGTTGATGCTGTTGGTACTCTTGTTCTTCCTTCTCAACCCATGGCTCAGATATATAGAACGATTGGGGAGAAGTATGGTGTGAATTATTCAGAGGAAGAGATTTTGTATAGATACAGAAGAGCTTATAGTCAACCTTGGGGTAAATCTCGTCTCAGATATGTTAATGATGGTAGACCTTTCTGGCAATACATAGTGAGTAACTCTACTGGCTGTTCGGATTCTCAATATTTTGAAGAGCTTTATAACTACTATATGACTGACAAGGCATGGCACCTATGTGATCCTAACACAGAAGAAGTGTTCAAAGCTCTTAGAAACTCAGGTGTGAAATTGGCTGTTGTGTCAAATTTTGACACTCGGTTAAGACCTCTCTTGCGGGCATTAAACTGTGATGATTGGTTTGATGCTGTAGCAGTATCAGCTGAGGTTGAAGCAGAGAAACCAAATCCAACTATATTTCTGAAAGCGTGTGAACTATTGGATGTAAAACCTGAGGATGCTGTTCATGTTGGGGATGATCGTCGCAATGATATATGGGTGCAGGCTGTGATGCATGGCTTTGGGGAAGTGATGTTCACTCTTTTAAGGAGGTAG
Protein sequence

>Msa1114210

MAVMSSFRSVLTSKSKSLTKWCRSPSYSSTSSAAAVVAEEQHDNSTYLKDYADYRRSLYGNITHKALLVDAVGTLVLPSQPMAQIYRTIGEKYGVNYSEEEILYRYRRAYSQPWGKSRLRYVNDGRPFWQYIVSNSTGCSDSQYFEELYNYYMTDKAWHLCDPNTEEVFKALRNSGVKLAVVSNFDTRLRPLLRALNCDDWFDAVAVSAEVEAEKPNPTIFLKACELLDVKPEDAVHVGDDRRNDIWVQAVMHGFGEVMFTLLRR*