Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160180 | XP_003625047.1 | 97.473 | 277 | 7 | 0 | 1 | 277 | 1 | 277 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160180 | sp|Q5HZL9|HDHD3_XENLA | 33.005 | 203 | 117 | 6 | 70 | 258 | 9 | 206 | 2.27e-19 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160180 | G7KRP6 | 97.473 | 277 | 7 | 0 | 1 | 277 | 1 | 277 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1033750 | Msa1160180 | 0.970016 | 5.571503e-131 | -8.615850e-47 |
| Msa1114210 | Msa1160180 | 0.830633 | 2.630762e-55 | -8.615850e-47 |
| Msa1160180 | Msa1374930 | 0.833399 | 5.453656e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160180 | MtrunA17_Chr7g0256641 | 97.473 | 277 | 7 | 0 | 1 | 277 | 1 | 277 | 0.0 | 563 |
| Msa1160180 | MtrunA17_Chr5g0416861 | 48.341 | 211 | 105 | 3 | 64 | 273 | 66 | 273 | 1.08e-67 | 211 |
| Msa1160180 | MtrunA17_Chr7g0231601 | 47.826 | 207 | 104 | 3 | 64 | 269 | 63 | 266 | 6.99e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1160180 | AT2G41250.1 | 81.304 | 230 | 43 | 0 | 48 | 277 | 61 | 290 | 2.75e-137 | 389 |
| Msa1160180 | AT1G14310.1 | 49.528 | 212 | 105 | 2 | 64 | 275 | 42 | 251 | 1.96e-67 | 210 |
Find 81 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATGATGGTAGACCTTTC+TGG | 0.249688 | 7_4:-49982563 | Msa1160180:CDS |
| ATCTTGTATTCATTTATTAA+AGG | 0.250230 | 7_4:+49983926 | None:intergenic |
| ATGATCGTCGAAATGATATA+TGG | 0.289147 | 7_4:-49980857 | Msa1160180:CDS |
| TTCAGAAATATAGTTGGATT+TGG | 0.302915 | 7_4:+49980930 | None:intergenic |
| TTGAACACTTCTTCTGTGTT+AGG | 0.306154 | 7_4:+49982337 | None:intergenic |
| TAGAAACTCAGGTGTGAAAT+TGG | 0.317258 | 7_4:-49982308 | Msa1160180:CDS |
| CAGGCTGTGATGCATGGCTT+TGG | 0.332233 | 7_4:-49980821 | Msa1160180:CDS |
| TTTGGTGAGTGACTTGGATT+TGG | 0.369028 | 7_4:+49983702 | None:intergenic |
| AGAACGATTGGGGAGAAATA+TGG | 0.377341 | 7_4:-49983403 | Msa1160180:CDS |
| AGGCTGTGATGCATGGCTTT+GGG | 0.378994 | 7_4:-49980820 | Msa1160180:CDS |
| TCTGAAAGCGTGTGAACTAT+TGG | 0.383129 | 7_4:-49980913 | Msa1160180:CDS |
| GATTATAGAAGATCTCTTTA+CGG | 0.384557 | 7_4:-49983583 | Msa1160180:CDS |
| CACAGCTGCGGCGGAGGAAG+TGG | 0.389807 | 7_4:+49983654 | None:intergenic |
| AAGGGTGTATGTAATAAAAT+AGG | 0.391192 | 7_4:+49984031 | None:intergenic |
| CACGCTTTCAGAAATATAGT+TGG | 0.393418 | 7_4:+49980924 | None:intergenic |
| TGCATCACAGCCTGCATCTC+TGG | 0.399671 | 7_4:+49980830 | None:intergenic |
| TCGGTTAAGACCTCTCTTGC+GGG | 0.408806 | 7_4:-49982263 | Msa1160180:CDS |
| AGCCACCACAGCTGCGGCGG+AGG | 0.419941 | 7_4:+49983648 | None:intergenic |
| TTTAGATATATAGAACGATT+GGG | 0.421275 | 7_4:-49983414 | Msa1160180:intron |
| TGTTCTTCCTTCTCAACCCA+TGG | 0.422624 | 7_4:-49983515 | Msa1160180:CDS |
| AGCACAGAGGATTGGTGTCC+AGG | 0.433372 | 7_4:-49980112 | Msa1160180:CDS |
| CTGAGGATGCTGTTCATGTT+GGG | 0.434567 | 7_4:-49980881 | Msa1160180:CDS |
| AAGAGCTTATAGTCAACCTT+GGG | 0.436522 | 7_4:-49983341 | Msa1160180:CDS |
| TCCTTCTCAACCCATGGCTC+AGG | 0.437339 | 7_4:-49983509 | Msa1160180:intron |
| GCTCTTCTTGTTGATGCTGT+TGG | 0.438636 | 7_4:-49983544 | Msa1160180:CDS |
| CTCACTATGTATTGCCAGAA+AGG | 0.449095 | 7_4:+49982549 | None:intergenic |
| GAGTAATTCTACTGGCTGTT+CGG | 0.455824 | 7_4:-49982529 | Msa1160180:CDS |
| CGACGGTGAACGGCACCATT+TGG | 0.457580 | 7_4:+49983684 | None:intergenic |
| TGATCGTCGAAATGATATAT+GGG | 0.458223 | 7_4:-49980856 | Msa1160180:CDS |
| CACTTCCTCCGCCGCAGCTG+TGG | 0.460319 | 7_4:-49983653 | Msa1160180:CDS |
| GCACCATTTGGTGAGTGACT+TGG | 0.468245 | 7_4:+49983696 | None:intergenic |
| TATTAATAAATAAAATAAAC+CGG | 0.478283 | 7_4:-49979871 | Msa1160180:three_prime_UTR |
| CTTTGCAGATATGTTAATGA+TGG | 0.480696 | 7_4:-49982576 | Msa1160180:intron |
| TTCCTCCGCCGCAGCTGTGG+TGG | 0.487008 | 7_4:-49983650 | Msa1160180:CDS |
| GGGCATTAAACTGTGATGAT+TGG | 0.499814 | 7_4:-49982243 | Msa1160180:CDS |
| TCTTCACATTGGAAATGAGT+TGG | 0.503588 | 7_4:+49983787 | None:intergenic |
| TTTACTCAAAATTAATCCAC+CGG | 0.509883 | 7_4:+49979852 | None:intergenic |
| TTCAAAGCTCTTAGAAACTC+AGG | 0.510990 | 7_4:-49982319 | Msa1160180:CDS |
| AATCCAAGTCACTCACCAAA+TGG | 0.515543 | 7_4:-49983699 | Msa1160180:CDS |
| ATATGGGGTGCCAGAGATGC+AGG | 0.522973 | 7_4:-49980840 | Msa1160180:CDS |
| ACCTGAGCCATGGGTTGAGA+AGG | 0.526827 | 7_4:+49983508 | None:intergenic |
| CATTTATTAAAGGATATATG+TGG | 0.526994 | 7_4:+49983936 | None:intergenic |
| GGCTGTGATGCATGGCTTTG+GGG | 0.533409 | 7_4:-49980819 | Msa1160180:CDS |
| TACATAGTGAGTAATTCTAC+TGG | 0.536989 | 7_4:-49982537 | Msa1160180:CDS |
| TTAGATATATAGAACGATTG+GGG | 0.538472 | 7_4:-49983413 | Msa1160180:intron |
| ATTATGTTAATATCATAAAA+CGG | 0.538831 | 7_4:-49984256 | None:intergenic |
| AGCTGCGGCGGAGGAAGTGG+AGG | 0.539047 | 7_4:+49983657 | None:intergenic |
| CCTGAGGATGCTGTTCATGT+TGG | 0.541192 | 7_4:-49980882 | Msa1160180:CDS |
| CTTGGGGTAAATCTCGTCTC+AGG | 0.541735 | 7_4:-49983324 | Msa1160180:intron |
| AACTTATGAAACAGAAATGA+AGG | 0.543782 | 7_4:-49979964 | Msa1160180:three_prime_UTR |
| TTCTTCAGCCACCACAGCTG+CGG | 0.544992 | 7_4:+49983642 | None:intergenic |
| CAGTTTAATGCCCGCAAGAG+AGG | 0.545810 | 7_4:+49982253 | None:intergenic |
| TTCAGCCACCACAGCTGCGG+CGG | 0.545958 | 7_4:+49983645 | None:intergenic |
| TTTATGCTACAAGTTCAAGA+AGG | 0.550134 | 7_4:-49980078 | Msa1160180:three_prime_UTR |
| GAAGAGCTTATAGTCAACCT+TGG | 0.555689 | 7_4:-49983342 | Msa1160180:CDS |
| TGTTCTTAGCTTCTTCACAT+TGG | 0.559222 | 7_4:+49983776 | None:intergenic |
| TGAAACAGAAATGAAGGTGT+AGG | 0.561462 | 7_4:-49979958 | Msa1160180:three_prime_UTR |
| CCAACATGAACAGCATCCTC+AGG | 0.569555 | 7_4:+49980882 | None:intergenic |
| ACGCAGGTAGCACAGAGGAT+TGG | 0.572051 | 7_4:-49980120 | Msa1160180:intron |
| TGGAGGAGTACGACGGTGAA+CGG | 0.578395 | 7_4:+49983674 | None:intergenic |
| CTGAGACGAGATTTACCCCA+AGG | 0.582915 | 7_4:+49983325 | None:intergenic |
| ATACAAACACTCGCATCGCA+CGG | 0.591978 | 7_4:+49983841 | None:intergenic |
| CTCGGTTAAGACCTCTCTTG+CGG | 0.592040 | 7_4:-49982264 | Msa1160180:CDS |
| GAGATGCAGGCTGTGATGCA+TGG | 0.598443 | 7_4:-49980827 | Msa1160180:CDS |
| TGAATGAATTACCTGAGCCA+TGG | 0.611058 | 7_4:+49983498 | None:intergenic |
| GAATGAATTACCTGAGCCAT+GGG | 0.613187 | 7_4:+49983499 | None:intergenic |
| ACAGAAATGAAGGTGTAGGT+AGG | 0.622289 | 7_4:-49979954 | Msa1160180:three_prime_UTR |
| CTTCTGTGTTAGGATCACAT+AGG | 0.622443 | 7_4:+49982347 | None:intergenic |
| TTCGTTATTTCTACGTGACA+CGG | 0.634315 | 7_4:+49983887 | None:intergenic |
| GAACAAATAACGAACGAACA+TGG | 0.637482 | 7_4:-49983758 | Msa1160180:exon |
| TGAGGATGCTGTTCATGTTG+GGG | 0.639896 | 7_4:-49980880 | Msa1160180:CDS |
| TAATAAATAAAATAAACCGG+TGG | 0.643912 | 7_4:-49979868 | Msa1160180:three_prime_UTR |
| ATATGGTGTGAATTATTCAG+AGG | 0.644916 | 7_4:-49983386 | Msa1160180:CDS |
| TGCTGTAGCAGTATCAGCTG+AGG | 0.669977 | 7_4:-49982215 | Msa1160180:intron |
| GATCGTCGAAATGATATATG+GGG | 0.681395 | 7_4:-49980855 | Msa1160180:CDS |
| GTATGAAACATGTGAACGAG+TGG | 0.682684 | 7_4:-49983822 | Msa1160180:five_prime_UTR |
| GAGGAAGTGGAGGAGTACGA+CGG | 0.706146 | 7_4:+49983667 | None:intergenic |
| TAACTACTATACGACTGACA+AGG | 0.713612 | 7_4:-49982481 | Msa1160180:intron |
| AGAGCTTATAGTCAACCTTG+GGG | 0.721676 | 7_4:-49983340 | Msa1160180:CDS |
| TGCTGACGCAGGTAGCACAG+AGG | 0.734423 | 7_4:-49980125 | Msa1160180:intron |
| ACTATTGGATGTAAAACCTG+AGG | 0.738416 | 7_4:-49980898 | Msa1160180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATAATATTTTTTTATAA+TGG | + | chr7_4:49980102-49980121 | None:intergenic | 0.0% |
| !!! | TTATTATACATTTTAGAAAA+AGG | + | chr7_4:49981664-49981683 | None:intergenic | 10.0% |
| !! | TAATATAATATAACATTTGA+GGG | + | chr7_4:49982040-49982059 | None:intergenic | 10.0% |
| !! | TTAATATAATATAACATTTG+AGG | + | chr7_4:49982041-49982060 | None:intergenic | 10.0% |
| !!! | TTTTTATAATGGTAATTGAA+GGG | + | chr7_4:49980091-49980110 | None:intergenic | 15.0% |
| !!! | TTTTTTATAATGGTAATTGA+AGG | + | chr7_4:49980092-49980111 | None:intergenic | 15.0% |
| !! | ATCTTGTATTCATTTATTAA+AGG | + | chr7_4:49980178-49980197 | None:intergenic | 15.0% |
| !! | TTTATATTAGAGATTATCAA+TGG | - | chr7_4:49980915-49980934 | Msa1160180:CDS | 15.0% |
| !!! | ATTAAACAAGTTTTTCATTA+TGG | - | chr7_4:49981433-49981452 | Msa1160180:intron | 15.0% |
| !! | AATATAATATAACATTTGAG+GGG | + | chr7_4:49982039-49982058 | None:intergenic | 15.0% |
| !! | TTAATGTATATGTGAATTAT+TGG | - | chr7_4:49983115-49983134 | Msa1160180:intron | 15.0% |
| !!! | ACATTTTATTAATAGTGTTT+AGG | - | chr7_4:49984064-49984083 | Msa1160180:five_prime_UTR | 15.0% |
| !! | AGAGAGAAAAAAATAATTGA+GGG | - | chr7_4:49980046-49980065 | Msa1160180:three_prime_UTR | 20.0% |
| !! | CATTTATTAAAGGATATATG+TGG | + | chr7_4:49980168-49980187 | None:intergenic | 20.0% |
| !!! | TTTTAGATATATAGAACGAT+TGG | - | chr7_4:49980686-49980705 | Msa1160180:intron | 20.0% |
| !! | TTTAGATATATAGAACGATT+GGG | - | chr7_4:49980687-49980706 | Msa1160180:intron | 20.0% |
| !! | AAAATGTAAGAGACTAATTT+GGG | - | chr7_4:49981181-49981200 | Msa1160180:intron | 20.0% |
| !!! | TTCACTCTAGATTTTTTTTA+TGG | - | chr7_4:49981265-49981284 | Msa1160180:intron | 20.0% |
| !!! | TCACTCTAGATTTTTTTTAT+GGG | - | chr7_4:49981266-49981285 | Msa1160180:intron | 20.0% |
| !!! | TTTTAGAAAAAGGTAACTAT+TGG | + | chr7_4:49981654-49981673 | None:intergenic | 20.0% |
| !! | CAAACTGATAAAACAAAATA+CGG | + | chr7_4:49981937-49981956 | None:intergenic | 20.0% |
| !! | AAATTGGGTGAAAATTTAAA+TGG | - | chr7_4:49982818-49982837 | Msa1160180:intron | 20.0% |
| !! | AATTGGGTGAAAATTTAAAT+GGG | - | chr7_4:49982819-49982838 | Msa1160180:intron | 20.0% |
| !! | AAATATAAATAACTGTCAAG+AGG | + | chr7_4:49982966-49982985 | None:intergenic | 20.0% |
| !! | AAAATCATTATTCAAATGCA+TGG | + | chr7_4:49983010-49983029 | None:intergenic | 20.0% |
| !!! | GATGCATAAGAAAATTTTAT+TGG | - | chr7_4:49983357-49983376 | Msa1160180:CDS | 20.0% |
| !!! | ATAAGAAAATTTTATTGGAG+TGG | - | chr7_4:49983362-49983381 | Msa1160180:CDS | 20.0% |
| !!! | CCTACATAAGAATTAATTTT+GGG | + | chr7_4:49983430-49983449 | None:intergenic | 20.0% |
| !!! | ACCTACATAAGAATTAATTT+TGG | + | chr7_4:49983431-49983450 | None:intergenic | 20.0% |
| !!! | TATTAATAGTTGGATTTTGA+TGG | + | chr7_4:49983532-49983551 | None:intergenic | 20.0% |
| !! | CAATGGTTATTATTAATAGT+TGG | + | chr7_4:49983542-49983561 | None:intergenic | 20.0% |
| !! | CAACTATTAATAATAACCAT+TGG | - | chr7_4:49983540-49983559 | Msa1160180:CDS | 20.0% |
| !! | TTATAAAATAGTCATACCAA+TGG | + | chr7_4:49983559-49983578 | None:intergenic | 20.0% |
| !!! | ATAGCATTGTTTCTATTTTT+TGG | + | chr7_4:49983730-49983749 | None:intergenic | 20.0% |
| !! | AAAAAAATAATAAACAGCAG+TGG | + | chr7_4:49983847-49983866 | None:intergenic | 20.0% |
| !! | TAATAAATAAAATAAACCGG+TGG | - | chr7_4:49984233-49984252 | Msa1160180:five_prime_UTR | 20.0% |
| ! | GAGAGAGAAAAAAATAATTG+AGG | - | chr7_4:49980045-49980064 | Msa1160180:three_prime_UTR | 25.0% |
| !! | AAGGGTGTATGTAATAAAAT+AGG | + | chr7_4:49980073-49980092 | None:intergenic | 25.0% |
| ! | GATTATAGAAGATCTCTTTA+CGG | - | chr7_4:49980518-49980537 | Msa1160180:intron | 25.0% |
| ! | TTAGATATATAGAACGATTG+GGG | - | chr7_4:49980688-49980707 | Msa1160180:intron | 25.0% |
| ! | TTCTTTGGATTGAAAATTTC+TGG | - | chr7_4:49980940-49980959 | Msa1160180:CDS | 25.0% |
| !!! | AAAATGCTATTTCAATGGTT+TGG | - | chr7_4:49980997-49981016 | Msa1160180:intron | 25.0% |
| ! | GAAAATGTAAGAGACTAATT+TGG | - | chr7_4:49981180-49981199 | Msa1160180:intron | 25.0% |
| ! | TTTATACAGAGACAGAAAAA+AGG | + | chr7_4:49981404-49981423 | None:intergenic | 25.0% |
| ! | GACTACTATATACTATAAGT+TGG | + | chr7_4:49982074-49982093 | None:intergenic | 25.0% |
| ! | ACAAGAAAATGAAATTTCCA+AGG | - | chr7_4:49982188-49982207 | Msa1160180:intron | 25.0% |
| ! | CATGTATATATACATCTATC+TGG | - | chr7_4:49982285-49982304 | Msa1160180:CDS | 25.0% |
| !!! | TTTCTTTCCCAAAGATTTTT+TGG | + | chr7_4:49982389-49982408 | None:intergenic | 25.0% |
| ! | TGAGGAATATTGAAGTAAAT+TGG | - | chr7_4:49982802-49982821 | Msa1160180:intron | 25.0% |
| ! | GAGGAATATTGAAGTAAATT+GGG | - | chr7_4:49982803-49982822 | Msa1160180:intron | 25.0% |
| ! | ATTGGGTGAAAATTTAAATG+GGG | - | chr7_4:49982820-49982839 | Msa1160180:intron | 25.0% |
| !! | GCATTTGAATAATGATTTTG+CGG | - | chr7_4:49983011-49983030 | Msa1160180:intron | 25.0% |
| ! | TTCAGAAATATAGTTGGATT+TGG | + | chr7_4:49983174-49983193 | None:intergenic | 25.0% |
| !! | ACATAAGAATTAATTTTGGG+AGG | + | chr7_4:49983427-49983446 | None:intergenic | 25.0% |
| ! | CCCAAAATTAATTCTTATGT+AGG | - | chr7_4:49983427-49983446 | Msa1160180:intron | 25.0% |
| !!! | TTCTATTTTTTGGCTAACTA+GGG | + | chr7_4:49983720-49983739 | None:intergenic | 25.0% |
| !!! | TTTCTATTTTTTGGCTAACT+AGG | + | chr7_4:49983721-49983740 | None:intergenic | 25.0% |
| ! | TGCTATTCTGTTACAAATTT+AGG | - | chr7_4:49983744-49983763 | Msa1160180:exon | 25.0% |
| ! | GCTATTCTGTTACAAATTTA+GGG | - | chr7_4:49983745-49983764 | Msa1160180:exon | 25.0% |
| ! | TTACAAATTTAGGGAAAACA+GGG | - | chr7_4:49983754-49983773 | Msa1160180:exon | 25.0% |
| !!! | CATACATTTTTGGATCATAT+TGG | + | chr7_4:49983808-49983827 | None:intergenic | 25.0% |
| ! | AACTTATGAAACAGAAATGA+AGG | - | chr7_4:49984137-49984156 | Msa1160180:five_prime_UTR | 25.0% |
| ! | TTTACTCAAAATTAATCCAC+CGG | + | chr7_4:49984252-49984271 | None:intergenic | 25.0% |
| !! | TTTTATCTCTCGTCTTATTG+TGG | + | chr7_4:49979997-49980016 | None:intergenic | 30.0% |
| ATATGGTGTGAATTATTCAG+AGG | - | chr7_4:49980715-49980734 | Msa1160180:intron | 30.0% | |
| AGATTATCAATGGCTTTCTT+TGG | - | chr7_4:49980925-49980944 | Msa1160180:CDS | 30.0% | |
| ! | CCATTGAAATAGCATTTTGA+AGG | + | chr7_4:49980995-49981014 | None:intergenic | 30.0% |
| !! | CCTTCAAAATGCTATTTCAA+TGG | - | chr7_4:49980992-49981011 | Msa1160180:intron | 30.0% |
| !! | AGTCTTTCACAATTTTTGAG+TGG | - | chr7_4:49981044-49981063 | Msa1160180:intron | 30.0% |
| !!! | GTCTTTCACAATTTTTGAGT+GGG | - | chr7_4:49981045-49981064 | Msa1160180:intron | 30.0% |
| ! | ATTTTTGTCAAGGACTGAAT+AGG | + | chr7_4:49981071-49981090 | None:intergenic | 30.0% |
| ! | TTTGGGCATAATTTTTGTCA+AGG | + | chr7_4:49981081-49981100 | None:intergenic | 30.0% |
| AAAAAGTCAGGGACTAATTT+GGG | + | chr7_4:49981098-49981117 | None:intergenic | 30.0% | |
| AAAATTGTGAGCAACTGATT+TGG | - | chr7_4:49981239-49981258 | Msa1160180:intron | 30.0% | |
| CTTTGCAGATATGTTAATGA+TGG | - | chr7_4:49981525-49981544 | Msa1160180:intron | 30.0% | |
| TACATAGTGAGTAATTCTAC+TGG | - | chr7_4:49981564-49981583 | Msa1160180:intron | 30.0% | |
| TAGAAAAAGGTAACTATTGG+AGG | + | chr7_4:49981651-49981670 | None:intergenic | 30.0% | |
| !!! | GAGTGGGATTTGATTTTTTT+TGG | - | chr7_4:49981706-49981725 | Msa1160180:intron | 30.0% |
| !! | TTGTGTCAAATTTTGACACT+CGG | - | chr7_4:49981819-49981838 | Msa1160180:intron | 30.0% |
| AATACAAAACACAATGGTTG+AGG | + | chr7_4:49982140-49982159 | None:intergenic | 30.0% | |
| TTCTTCTTGAATATTCAGTG+CGG | + | chr7_4:49982164-49982183 | None:intergenic | 30.0% | |
| !! | AGCTTGCATAAATTTTTCGA+GGG | + | chr7_4:49982313-49982332 | None:intergenic | 30.0% |
| ATCACTGCCAAAAAATCTTT+GGG | - | chr7_4:49982379-49982398 | Msa1160180:intron | 30.0% | |
| ! | AATCTTTGGGAAAGAAATGA+TGG | - | chr7_4:49982392-49982411 | Msa1160180:intron | 30.0% |
| !! | ACAGTTCTAAGAATTGCATT+GGG | + | chr7_4:49982624-49982643 | None:intergenic | 30.0% |
| !! | TACAGTTCTAAGAATTGCAT+TGG | + | chr7_4:49982625-49982644 | None:intergenic | 30.0% |
| TGCAATTCTTAGAACTGTAT+TGG | - | chr7_4:49982626-49982645 | Msa1160180:intron | 30.0% | |
| AATTCTTAGAACTGTATTGG+AGG | - | chr7_4:49982629-49982648 | Msa1160180:intron | 30.0% | |
| ! | GTTTCAAATGAAAGCATGTT+TGG | + | chr7_4:49982718-49982737 | None:intergenic | 30.0% |
| ! | CATGCTTTCATTTGAAACAA+TGG | - | chr7_4:49982720-49982739 | Msa1160180:intron | 30.0% |
| ! | TTTGAAACAATGGATTTGCA+TGG | - | chr7_4:49982730-49982749 | Msa1160180:intron | 30.0% |
| ! | TTGAAACAATGGATTTGCAT+GGG | - | chr7_4:49982731-49982750 | Msa1160180:intron | 30.0% |
| TGATACATCTTCAATGCTAA+GGG | + | chr7_4:49982767-49982786 | None:intergenic | 30.0% | |
| TTGATACATCTTCAATGCTA+AGG | + | chr7_4:49982768-49982787 | None:intergenic | 30.0% | |
| AATTTAAATGGGGACTTTGA+TGG | - | chr7_4:49982830-49982849 | Msa1160180:intron | 30.0% | |
| GAATCATTCAATAGATTCTG+TGG | - | chr7_4:49982887-49982906 | Msa1160180:intron | 30.0% | |
| CAACTCCTCAAAGTTAATAT+TGG | + | chr7_4:49982926-49982945 | None:intergenic | 30.0% | |
| ! | CAATATTAACTTTGAGGAGT+TGG | - | chr7_4:49982924-49982943 | Msa1160180:intron | 30.0% |
| ATGAGTTCATAAATCAGCTA+TGG | + | chr7_4:49983088-49983107 | None:intergenic | 30.0% | |
| ATGATCGTCGAAATGATATA+TGG | - | chr7_4:49983244-49983263 | Msa1160180:intron | 30.0% | |
| TGATCGTCGAAATGATATAT+GGG | - | chr7_4:49983245-49983264 | Msa1160180:intron | 30.0% | |
| ! | AAGTGATGTTCACTCTTTTA+AGG | - | chr7_4:49983305-49983324 | Msa1160180:intron | 30.0% |
| TCTATACAGTATACACAACT+GGG | + | chr7_4:49983497-49983516 | None:intergenic | 30.0% | |
| TTCTATACAGTATACACAAC+TGG | + | chr7_4:49983498-49983517 | None:intergenic | 30.0% | |
| GTTGTGTATACTGTATAGAA+TGG | - | chr7_4:49983498-49983517 | Msa1160180:intron | 30.0% | |
| AATCAAGGGATTGTATAGAA+TGG | + | chr7_4:49983643-49983662 | None:intergenic | 30.0% | |
| GTTACAAATTTAGGGAAAAC+AGG | - | chr7_4:49983753-49983772 | Msa1160180:exon | 30.0% | |
| AAGGATATACTTGTCAGATA+GGG | + | chr7_4:49983781-49983800 | None:intergenic | 30.0% | |
| TAAGGATATACTTGTCAGAT+AGG | + | chr7_4:49983782-49983801 | None:intergenic | 30.0% | |
| TTTGGATCATATTGGACATA+AGG | + | chr7_4:49983800-49983819 | None:intergenic | 30.0% | |
| ! | CCATATAAGGCATACATTTT+TGG | + | chr7_4:49983818-49983837 | None:intergenic | 30.0% |
| CCAAAAATGTATGCCTTATA+TGG | - | chr7_4:49983815-49983834 | Msa1160180:five_prime_UTR | 30.0% | |
| TTTATGCTACAAGTTCAAGA+AGG | - | chr7_4:49984023-49984042 | Msa1160180:five_prime_UTR | 30.0% | |
| !!! | ACAGATTTTCTAAAGCTACA+AGG | - | chr7_4:49984205-49984224 | Msa1160180:five_prime_UTR | 30.0% |
| !! | TTCGTTATTTCTACGTGACA+CGG | + | chr7_4:49980217-49980236 | None:intergenic | 35.0% |
| TCTTCACATTGGAAATGAGT+TGG | + | chr7_4:49980317-49980336 | None:intergenic | 35.0% | |
| TGTTCTTAGCTTCTTCACAT+TGG | + | chr7_4:49980328-49980347 | None:intergenic | 35.0% | |
| GAACAAATAACGAACGAACA+TGG | - | chr7_4:49980343-49980362 | Msa1160180:intron | 35.0% | |
| AAGAGCTTATAGTCAACCTT+GGG | - | chr7_4:49980760-49980779 | Msa1160180:intron | 35.0% | |
| GAAAAAGTCAGGGACTAATT+TGG | + | chr7_4:49981099-49981118 | None:intergenic | 35.0% | |
| TCCCTAACTCATTGTATTAG+AGG | - | chr7_4:49981137-49981156 | Msa1160180:intron | 35.0% | |
| CCCTCTAATACAATGAGTTA+GGG | + | chr7_4:49981141-49981160 | None:intergenic | 35.0% | |
| CCCTAACTCATTGTATTAGA+GGG | - | chr7_4:49981138-49981157 | Msa1160180:intron | 35.0% | |
| TCCCTCTAATACAATGAGTT+AGG | + | chr7_4:49981142-49981161 | None:intergenic | 35.0% | |
| TAACTCATTGTATTAGAGGG+AGG | - | chr7_4:49981141-49981160 | Msa1160180:intron | 35.0% | |
| !!! | ATTTGGGCTTACTTTTTGTC+AGG | - | chr7_4:49981197-49981216 | Msa1160180:intron | 35.0% |
| !!! | TTTGGGCTTACTTTTTGTCA+GGG | - | chr7_4:49981198-49981217 | Msa1160180:intron | 35.0% |
| ! | AGTTGCTCACAATTTTCATG+CGG | + | chr7_4:49981235-49981254 | None:intergenic | 35.0% |
| !! | TTTTTATGGGTCTGACTTGT+TGG | - | chr7_4:49981279-49981298 | Msa1160180:intron | 35.0% |
| !!! | TTTTATGGGTCTGACTTGTT+GGG | - | chr7_4:49981280-49981299 | Msa1160180:intron | 35.0% |
| !!! | GTAGCGTTTTTAGTACATAC+TGG | - | chr7_4:49981323-49981342 | Msa1160180:intron | 35.0% |
| ATACAGAGACAGAAAAAAGG+AGG | + | chr7_4:49981401-49981420 | None:intergenic | 35.0% | |
| TTAATGATGGTAGACCTTTC+TGG | - | chr7_4:49981538-49981557 | Msa1160180:intron | 35.0% | |
| TAACTACTATACGACTGACA+AGG | - | chr7_4:49981620-49981639 | Msa1160180:intron | 35.0% | |
| CAGATTGAAAACAGGAAAAG+AGG | + | chr7_4:49981687-49981706 | None:intergenic | 35.0% | |
| ! | TTTCCTGTTTTCAATCTGAG+TGG | - | chr7_4:49981689-49981708 | Msa1160180:intron | 35.0% |
| ! | TTCCTGTTTTCAATCTGAGT+GGG | - | chr7_4:49981690-49981709 | Msa1160180:intron | 35.0% |
| ! | TTTGGCATTTTATCATCCAC+AGG | - | chr7_4:49981724-49981743 | Msa1160180:intron | 35.0% |
| TTGAACACTTCTTCTGTGTT+AGG | + | chr7_4:49981767-49981786 | None:intergenic | 35.0% | |
| TTCAAAGCTCTTAGAAACTC+AGG | - | chr7_4:49981782-49981801 | Msa1160180:intron | 35.0% | |
| TAGAAACTCAGGTGTGAAAT+TGG | - | chr7_4:49981793-49981812 | Msa1160180:intron | 35.0% | |
| TAGCATGCATCAATAGATGA+GGG | + | chr7_4:49981985-49982004 | None:intergenic | 35.0% | |
| TGCGGAAATACAAAACACAA+TGG | + | chr7_4:49982146-49982165 | None:intergenic | 35.0% | |
| ! | GAGCTTGCATAAATTTTTCG+AGG | + | chr7_4:49982314-49982333 | None:intergenic | 35.0% |
| CATCACTGCCAAAAAATCTT+TGG | - | chr7_4:49982378-49982397 | Msa1160180:intron | 35.0% | |
| AGATTATGCTTTCACTATCG+TGG | + | chr7_4:49982502-49982521 | None:intergenic | 35.0% | |
| CTTCACAGTTGACATATTTG+TGG | + | chr7_4:49982564-49982583 | None:intergenic | 35.0% | |
| ! | AAAGCATGTTTGGTTCAATG+GGG | + | chr7_4:49982708-49982727 | None:intergenic | 35.0% |
| ! | GAAAGCATGTTTGGTTCAAT+GGG | + | chr7_4:49982709-49982728 | None:intergenic | 35.0% |
| ! | TGAAAGCATGTTTGGTTCAA+TGG | + | chr7_4:49982710-49982729 | None:intergenic | 35.0% |
| ! | TCAAGTATTGCATGCAATTG+AGG | - | chr7_4:49982784-49982803 | Msa1160180:intron | 35.0% |
| TGCTGCCAATATTAACTTTG+AGG | - | chr7_4:49982918-49982937 | Msa1160180:intron | 35.0% | |
| AATCAGCTATGGAACAGAAA+AGG | + | chr7_4:49983077-49983096 | None:intergenic | 35.0% | |
| TTGGTATGCCTATTTCATAC+AGG | - | chr7_4:49983134-49983153 | Msa1160180:intron | 35.0% | |
| TGCTTCAACCTGTATGAAAT+AGG | + | chr7_4:49983145-49983164 | None:intergenic | 35.0% | |
| CACGCTTTCAGAAATATAGT+TGG | + | chr7_4:49983180-49983199 | None:intergenic | 35.0% | |
| ACTATTGGATGTAAAACCTG+AGG | - | chr7_4:49983203-49983222 | Msa1160180:intron | 35.0% | |
| GATCGTCGAAATGATATATG+GGG | - | chr7_4:49983246-49983265 | Msa1160180:intron | 35.0% | |
| !! | TGATGTTCACTCTTTTAAGG+AGG | - | chr7_4:49983308-49983327 | Msa1160180:intron | 35.0% |
| ! | AAATTCAGGTTCTTACTGCT+GGG | - | chr7_4:49983458-49983477 | Msa1160180:intron | 35.0% |
| !!! | AGTTGGATTTTGATGGACTA+TGG | + | chr7_4:49983525-49983544 | None:intergenic | 35.0% |
| ! | TTTGGACTTTTGGTCTATGA+TGG | + | chr7_4:49983609-49983628 | None:intergenic | 35.0% |
| ATTGACATGTGGGAAATCAA+GGG | + | chr7_4:49983657-49983676 | None:intergenic | 35.0% | |
| AATTGACATGTGGGAAATCA+AGG | + | chr7_4:49983658-49983677 | None:intergenic | 35.0% | |
| ATTGGGAATTTGGTATCTGA+GGG | + | chr7_4:49983689-49983708 | None:intergenic | 35.0% | |
| TATTGGGAATTTGGTATCTG+AGG | + | chr7_4:49983690-49983709 | None:intergenic | 35.0% | |
| AGATACCAAATTCCCAATAG+AGG | - | chr7_4:49983691-49983710 | Msa1160180:CDS | 35.0% | |
| ! | GCAGTGGATTTATCCATATA+AGG | + | chr7_4:49983831-49983850 | None:intergenic | 35.0% |
| !! | GCATAAACATTTTTCAGACC+TGG | + | chr7_4:49984010-49984029 | None:intergenic | 35.0% |
| ! | TGAAACAGAAATGAAGGTGT+AGG | - | chr7_4:49984143-49984162 | Msa1160180:five_prime_UTR | 35.0% |
| CGCACGGAATCGATATTTAA+CGG | + | chr7_4:49980247-49980266 | None:intergenic | 40.0% | |
| GTATGAAACATGTGAACGAG+TGG | - | chr7_4:49980279-49980298 | Msa1160180:intron | 40.0% | |
| ! | TTTGGTGAGTGACTTGGATT+TGG | + | chr7_4:49980402-49980421 | None:intergenic | 40.0% |
| AATCCAAGTCACTCACCAAA+TGG | - | chr7_4:49980402-49980421 | Msa1160180:intron | 40.0% | |
| GAATGAATTACCTGAGCCAT+GGG | + | chr7_4:49980605-49980624 | None:intergenic | 40.0% | |
| TGAATGAATTACCTGAGCCA+TGG | + | chr7_4:49980606-49980625 | None:intergenic | 40.0% | |
| AGAACGATTGGGGAGAAATA+TGG | - | chr7_4:49980698-49980717 | Msa1160180:intron | 40.0% | |
| GAAGAGCTTATAGTCAACCT+TGG | - | chr7_4:49980759-49980778 | Msa1160180:intron | 40.0% | |
| AGAGCTTATAGTCAACCTTG+GGG | - | chr7_4:49980761-49980780 | Msa1160180:intron | 40.0% | |
| ! | GGATTTAGATTTTGCCCTGT+TGG | - | chr7_4:49980961-49980980 | Msa1160180:intron | 40.0% |
| !! | TGAAGGTACTTTCACCAACA+GGG | + | chr7_4:49980978-49980997 | None:intergenic | 40.0% |
| !! | TTGAAGGTACTTTCACCAAC+AGG | + | chr7_4:49980979-49980998 | None:intergenic | 40.0% |
| !!! | AGTCCCTGACTTTTTCAAAC+CGG | - | chr7_4:49981103-49981122 | Msa1160180:intron | 40.0% |
| ! | TCTCCGGTTTGAAAAAGTCA+GGG | + | chr7_4:49981109-49981128 | None:intergenic | 40.0% |
| ! | GTTAGGGACTAATTTGTCTC+CGG | + | chr7_4:49981125-49981144 | None:intergenic | 40.0% |
| ! | GTTGCTCACAATTTTCATGC+GGG | + | chr7_4:49981234-49981253 | None:intergenic | 40.0% |
| CTCACTATGTATTGCCAGAA+AGG | + | chr7_4:49981555-49981574 | None:intergenic | 40.0% | |
| ! | GAGTAATTCTACTGGCTGTT+CGG | - | chr7_4:49981572-49981591 | Msa1160180:intron | 40.0% |
| ATCCCACTCAGATTGAAAAC+AGG | + | chr7_4:49981695-49981714 | None:intergenic | 40.0% | |
| ! | CATTTTATCATCCACAGGCA+TGG | - | chr7_4:49981729-49981748 | Msa1160180:intron | 40.0% |
| CTTCTGTGTTAGGATCACAT+AGG | + | chr7_4:49981757-49981776 | None:intergenic | 40.0% | |
| GGGCATTAAACTGTGATGAT+TGG | - | chr7_4:49981858-49981877 | Msa1160180:intron | 40.0% | |
| AGCATGCATCAATAGATGAG+GGG | + | chr7_4:49981984-49982003 | None:intergenic | 40.0% | |
| CTAGCATGCATCAATAGATG+AGG | + | chr7_4:49981986-49982005 | None:intergenic | 40.0% | |
| ! | TGCATGCTAGTATTTCTGCA+TGG | - | chr7_4:49981996-49982015 | Msa1160180:intron | 40.0% |
| ! | ATGCTAGTATTTCTGCATGG+CGG | - | chr7_4:49981999-49982018 | Msa1160180:intron | 40.0% |
| TAGTCGTAACTTCCTCACTT+TGG | - | chr7_4:49982089-49982108 | Msa1160180:intron | 40.0% | |
| AGTCGTAACTTCCTCACTTT+GGG | - | chr7_4:49982090-49982109 | Msa1160180:intron | 40.0% | |
| AAAACACAATGGTTGAGGAG+TGG | + | chr7_4:49982135-49982154 | None:intergenic | 40.0% | |
| TAACTTTCCACCATCACACT+TGG | - | chr7_4:49982242-49982261 | Msa1160180:CDS | 40.0% | |
| AACAAATGAGCCAAGTGTGA+TGG | + | chr7_4:49982255-49982274 | None:intergenic | 40.0% | |
| TCGATACAGTAAGTTCAGTG+AGG | + | chr7_4:49982336-49982355 | None:intergenic | 40.0% | |
| GCATCTTGCAGAAACATGTT+AGG | - | chr7_4:49982448-49982467 | Msa1160180:intron | 40.0% | |
| TCTTAGAACTGTATTGGAGG+AGG | - | chr7_4:49982632-49982651 | Msa1160180:intron | 40.0% | |
| ! | AAGCATGTTTGGTTCAATGG+GGG | + | chr7_4:49982707-49982726 | None:intergenic | 40.0% |
| ! | TCTGAAAGCGTGTGAACTAT+TGG | - | chr7_4:49983188-49983207 | Msa1160180:intron | 40.0% |
| TTTATTGGAGTGGAGACTAG+AGG | - | chr7_4:49983372-49983391 | Msa1160180:CDS | 40.0% | |
| TTATTGGAGTGGAGACTAGA+GGG | - | chr7_4:49983373-49983392 | Msa1160180:CDS | 40.0% | |
| !! | AGGATGTTTTATTCTCCCCT+AGG | + | chr7_4:49983407-49983426 | None:intergenic | 40.0% |
| AGTAAGAACCTGAATTTGCG+AGG | + | chr7_4:49983455-49983474 | None:intergenic | 40.0% | |
| ! | CAAATTCAGGTTCTTACTGC+TGG | - | chr7_4:49983457-49983476 | Msa1160180:intron | 40.0% |
| !!! | CCTCATGAGTTTTGGACTTT+TGG | + | chr7_4:49983619-49983638 | None:intergenic | 40.0% |
| CCAAAAGTCCAAAACTCATG+AGG | - | chr7_4:49983616-49983635 | Msa1160180:CDS | 40.0% | |
| ! | AGAATGGTCCTCATGAGTTT+TGG | + | chr7_4:49983627-49983646 | None:intergenic | 40.0% |
| GGAAGGAGAAATTGACATGT+GGG | + | chr7_4:49983667-49983686 | None:intergenic | 40.0% | |
| TTGGGAATTTGGTATCTGAG+GGG | + | chr7_4:49983688-49983707 | None:intergenic | 40.0% | |
| TAACTAGGGAGACCTCTATT+GGG | + | chr7_4:49983706-49983725 | None:intergenic | 40.0% | |
| ! | ACAGAAATGAAGGTGTAGGT+AGG | - | chr7_4:49984147-49984166 | Msa1160180:five_prime_UTR | 40.0% |
| ATACAAACACTCGCATCGCA+CGG | + | chr7_4:49980263-49980282 | None:intergenic | 45.0% | |
| GCTCTTCTTGTTGATGCTGT+TGG | - | chr7_4:49980557-49980576 | Msa1160180:intron | 45.0% | |
| TGTTCTTCCTTCTCAACCCA+TGG | - | chr7_4:49980586-49980605 | Msa1160180:intron | 45.0% | |
| ! | GTCTCCGGTTTGAAAAAGTC+AGG | + | chr7_4:49981110-49981129 | None:intergenic | 45.0% |
| CATGCATCAATAGATGAGGG+GGG | + | chr7_4:49981982-49982001 | None:intergenic | 45.0% | |
| GCATGCATCAATAGATGAGG+GGG | + | chr7_4:49981983-49982002 | None:intergenic | 45.0% | |
| ! | TGCTAGTATTTCTGCATGGC+GGG | - | chr7_4:49982000-49982019 | Msa1160180:intron | 45.0% |
| ! | TTCCTCACTTTGGGTTAAGC+AGG | - | chr7_4:49982099-49982118 | Msa1160180:intron | 45.0% |
| ! | TCCTCACTTTGGGTTAAGCA+GGG | - | chr7_4:49982100-49982119 | Msa1160180:intron | 45.0% |
| GTTCAAGCGAGTTTGAACCT+TGG | + | chr7_4:49982208-49982227 | None:intergenic | 45.0% | |
| AAATGAGCCAAGTGTGATGG+TGG | + | chr7_4:49982252-49982271 | None:intergenic | 45.0% | |
| CTGAGGATGCTGTTCATGTT+GGG | - | chr7_4:49983220-49983239 | Msa1160180:intron | 45.0% | |
| TGAGGATGCTGTTCATGTTG+GGG | - | chr7_4:49983221-49983240 | Msa1160180:intron | 45.0% | |
| TGTAGGTACCTCGCAAATTC+AGG | - | chr7_4:49983444-49983463 | Msa1160180:intron | 45.0% | |
| GGGAAGGAGAAATTGACATG+TGG | + | chr7_4:49983668-49983687 | None:intergenic | 45.0% | |
| GAATTTGGTATCTGAGGGGA+AGG | + | chr7_4:49983684-49983703 | None:intergenic | 45.0% | |
| GGAGACCTCTATTGGGAATT+TGG | + | chr7_4:49983699-49983718 | None:intergenic | 45.0% | |
| CTAACTAGGGAGACCTCTAT+TGG | + | chr7_4:49983707-49983726 | None:intergenic | 45.0% | |
| ! | CTTGATTCTTTTGCTGACGC+AGG | - | chr7_4:49983965-49983984 | Msa1160180:five_prime_UTR | 45.0% |
| !! | TATTAATAAATAAAATAAAC+CGG | - | chr7_4:49984230-49984249 | Msa1160180:five_prime_UTR | 5.0% |
| ! | GCACCATTTGGTGAGTGACT+TGG | + | chr7_4:49980408-49980427 | None:intergenic | 50.0% |
| CTGAGACGAGATTTACCCCA+AGG | + | chr7_4:49980779-49980798 | None:intergenic | 50.0% | |
| CTTGGGGTAAATCTCGTCTC+AGG | - | chr7_4:49980777-49980796 | Msa1160180:intron | 50.0% | |
| !! | GTCTGACTTGTTGGGTTGAG+TGG | - | chr7_4:49981288-49981307 | Msa1160180:intron | 50.0% |
| CTCGGTTAAGACCTCTCTTG+CGG | - | chr7_4:49981837-49981856 | Msa1160180:intron | 50.0% | |
| TCGGTTAAGACCTCTCTTGC+GGG | - | chr7_4:49981838-49981857 | Msa1160180:intron | 50.0% | |
| CAGTTTAATGCCCGCAAGAG+AGG | + | chr7_4:49981851-49981870 | None:intergenic | 50.0% | |
| TGCTGTAGCAGTATCAGCTG+AGG | - | chr7_4:49981886-49981905 | Msa1160180:intron | 50.0% | |
| TCAATAGATGAGGGGGGAAG+TGG | + | chr7_4:49981976-49981995 | None:intergenic | 50.0% | |
| ! | TAGTATTTCTGCATGGCGGG+TGG | - | chr7_4:49982003-49982022 | Msa1160180:intron | 50.0% |
| !! | AGTATTTCTGCATGGCGGGT+GGG | - | chr7_4:49982004-49982023 | Msa1160180:intron | 50.0% |
| ACCCTGCTTAACCCAAAGTG+AGG | + | chr7_4:49982104-49982123 | None:intergenic | 50.0% | |
| ATGGTTGAGGAGTGGAACAC+AGG | + | chr7_4:49982127-49982146 | None:intergenic | 50.0% | |
| GAAGCAGCTTAGCATGACTC+TGG | - | chr7_4:49982654-49982673 | Msa1160180:intron | 50.0% | |
| AACTGTCAAGAGGATCTCGC+AGG | + | chr7_4:49982956-49982975 | None:intergenic | 50.0% | |
| CCAACATGAACAGCATCCTC+AGG | + | chr7_4:49983222-49983241 | None:intergenic | 50.0% | |
| CCTGAGGATGCTGTTCATGT+TGG | - | chr7_4:49983219-49983238 | Msa1160180:intron | 50.0% | |
| AGGCTGTGATGCATGGCTTT+GGG | - | chr7_4:49983281-49983300 | Msa1160180:intron | 50.0% | |
| ! | TTCAGGTTCTTACTGCTGGG+TGG | - | chr7_4:49983461-49983480 | Msa1160180:intron | 50.0% |
| ! | TGGAGGAGTACGACGGTGAA+CGG | + | chr7_4:49980430-49980449 | None:intergenic | 55.0% |
| ! | GAGGAAGTGGAGGAGTACGA+CGG | + | chr7_4:49980437-49980456 | None:intergenic | 55.0% |
| TTCTTCAGCCACCACAGCTG+CGG | + | chr7_4:49980462-49980481 | None:intergenic | 55.0% | |
| TCCTTCTCAACCCATGGCTC+AGG | - | chr7_4:49980592-49980611 | Msa1160180:intron | 55.0% | |
| ! | ACCTGAGCCATGGGTTGAGA+AGG | + | chr7_4:49980596-49980615 | None:intergenic | 55.0% |
| ! | TCACATAGGTGCCATGCCTG+TGG | + | chr7_4:49981743-49981762 | None:intergenic | 55.0% |
| GGGGGGAAGTGGAAAACATG+CGG | + | chr7_4:49981965-49981984 | None:intergenic | 55.0% | |
| ! | ATATGGGGTGCCAGAGATGC+AGG | - | chr7_4:49983261-49983280 | Msa1160180:intron | 55.0% |
| TGCATCACAGCCTGCATCTC+TGG | + | chr7_4:49983274-49983293 | None:intergenic | 55.0% | |
| GAGATGCAGGCTGTGATGCA+TGG | - | chr7_4:49983274-49983293 | Msa1160180:intron | 55.0% | |
| CAGGCTGTGATGCATGGCTT+TGG | - | chr7_4:49983280-49983299 | Msa1160180:intron | 55.0% | |
| ! | GGCTGTGATGCATGGCTTTG+GGG | - | chr7_4:49983282-49983301 | Msa1160180:intron | 55.0% |
| ACTAGAGGGCGAGTACACCT+AGG | - | chr7_4:49983387-49983406 | Msa1160180:CDS | 55.0% | |
| CTAGAGGGCGAGTACACCTA+GGG | - | chr7_4:49983388-49983407 | Msa1160180:CDS | 55.0% | |
| TAGAGGGCGAGTACACCTAG+GGG | - | chr7_4:49983389-49983408 | Msa1160180:CDS | 55.0% | |
| ACGCAGGTAGCACAGAGGAT+TGG | - | chr7_4:49983981-49984000 | Msa1160180:five_prime_UTR | 55.0% | |
| ! | AGCACAGAGGATTGGTGTCC+AGG | - | chr7_4:49983989-49984008 | Msa1160180:five_prime_UTR | 55.0% |
| CGACGGTGAACGGCACCATT+TGG | + | chr7_4:49980420-49980439 | None:intergenic | 60.0% | |
| TGCTGACGCAGGTAGCACAG+AGG | - | chr7_4:49983976-49983995 | Msa1160180:five_prime_UTR | 60.0% | |
| TTCAGCCACCACAGCTGCGG+CGG | + | chr7_4:49980459-49980478 | None:intergenic | 65.0% | |
| AGCTGCGGCGGAGGAAGTGG+AGG | + | chr7_4:49980447-49980466 | None:intergenic | 70.0% | |
| CACAGCTGCGGCGGAGGAAG+TGG | + | chr7_4:49980450-49980469 | None:intergenic | 70.0% | |
| CACTTCCTCCGCCGCAGCTG+TGG | - | chr7_4:49980448-49980467 | Msa1160180:intron | 70.0% | |
| TTCCTCCGCCGCAGCTGTGG+TGG | - | chr7_4:49980451-49980470 | Msa1160180:intron | 70.0% | |
| !! | CTGCATGGCGGGTGGGAGCA+TGG | - | chr7_4:49982011-49982030 | Msa1160180:intron | 70.0% |
| AGCCACCACAGCTGCGGCGG+AGG | + | chr7_4:49980456-49980475 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 49979851 | 49984272 | 49979851 | ID=Msa1160180;Name=Msa1160180 |
| chr7_4 | mRNA | 49979851 | 49984272 | 49979851 | ID=Msa1160180-mRNA-1;Parent=Msa1160180;Name=Msa1160180-mRNA-1;_AED=0.07;_eAED=0.07;_QI=511|1|1|1|1|1|6|256|277 |
| chr7_4 | exon | 49979851 | 49980136 | 49979851 | ID=Msa1160180-mRNA-1:exon:13851;Parent=Msa1160180-mRNA-1 |
| chr7_4 | exon | 49980794 | 49980967 | 49980794 | ID=Msa1160180-mRNA-1:exon:13850;Parent=Msa1160180-mRNA-1 |
| chr7_4 | exon | 49982216 | 49982377 | 49982216 | ID=Msa1160180-mRNA-1:exon:13849;Parent=Msa1160180-mRNA-1 |
| chr7_4 | exon | 49982482 | 49982590 | 49982482 | ID=Msa1160180-mRNA-1:exon:13848;Parent=Msa1160180-mRNA-1 |
| chr7_4 | exon | 49983325 | 49983431 | 49983325 | ID=Msa1160180-mRNA-1:exon:13847;Parent=Msa1160180-mRNA-1 |
| chr7_4 | exon | 49983510 | 49984272 | 49983510 | ID=Msa1160180-mRNA-1:exon:13846;Parent=Msa1160180-mRNA-1 |
| chr7_4 | five_prime_UTR | 49983762 | 49984272 | 49983762 | ID=Msa1160180-mRNA-1:five_prime_utr;Parent=Msa1160180-mRNA-1 |
| chr7_4 | CDS | 49983510 | 49983761 | 49983510 | ID=Msa1160180-mRNA-1:cds;Parent=Msa1160180-mRNA-1 |
| chr7_4 | CDS | 49983325 | 49983431 | 49983325 | ID=Msa1160180-mRNA-1:cds;Parent=Msa1160180-mRNA-1 |
| chr7_4 | CDS | 49982482 | 49982590 | 49982482 | ID=Msa1160180-mRNA-1:cds;Parent=Msa1160180-mRNA-1 |
| chr7_4 | CDS | 49982216 | 49982377 | 49982216 | ID=Msa1160180-mRNA-1:cds;Parent=Msa1160180-mRNA-1 |
| chr7_4 | CDS | 49980794 | 49980967 | 49980794 | ID=Msa1160180-mRNA-1:cds;Parent=Msa1160180-mRNA-1 |
| chr7_4 | CDS | 49980107 | 49980136 | 49980107 | ID=Msa1160180-mRNA-1:cds;Parent=Msa1160180-mRNA-1 |
| chr7_4 | three_prime_UTR | 49979851 | 49980106 | 49979851 | ID=Msa1160180-mRNA-1:three_prime_utr;Parent=Msa1160180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
