Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116240 | AES90576.2 | 63.934 | 122 | 34 | 2 | 6 | 127 | 67 | 178 | 4.01e-44 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116240 | G7JV28 | 63.934 | 122 | 34 | 2 | 6 | 127 | 67 | 178 | 1.92e-44 | 159 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0386580 | Msa1116240 | 0.808832 | 2.551883e-50 | -8.615850e-47 |
| Msa1116240 | Msa1116250 | 0.919413 | 4.645943e-87 | -8.615850e-47 |
| Msa1116240 | Msa1116260 | 0.827989 | 1.153598e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116240 | MtrunA17_Chr4g0049701 | 63.934 | 122 | 34 | 2 | 6 | 127 | 67 | 178 | 3.69e-48 | 159 |
| Msa1116240 | MtrunA17_Chr4g0049671 | 76.829 | 82 | 19 | 0 | 6 | 87 | 61 | 142 | 2.35e-40 | 144 |
| Msa1116240 | MtrunA17_Chr4g0049651 | 68.293 | 82 | 26 | 0 | 6 | 87 | 70 | 151 | 1.67e-33 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTCATCATACCGGATTT+TGG | 0.172853 | 7_3:+63862995 | Msa1116240:CDS |
| GACTTCAACATCAATTGTTT+TGG | 0.284110 | 7_3:-63864634 | None:intergenic |
| TGTGACTATTTGTCGTTTCA+TGG | 0.289329 | 7_3:-63863053 | None:intergenic |
| CACTGACACAAGAGCCTTGA+TGG | 0.322437 | 7_3:+63864154 | Msa1116240:CDS |
| GTCGTTTCATGGAGCGAATA+AGG | 0.360177 | 7_3:-63863042 | None:intergenic |
| TTAAGCTAACGATCATCTTA+TGG | 0.371974 | 7_3:+63862975 | Msa1116240:CDS |
| TCTGAAGAAGTTAAAATCTC+TGG | 0.431243 | 7_3:-63863947 | None:intergenic |
| GCTAGCAATGAGTTTCTGTA+AGG | 0.438556 | 7_3:-63863170 | None:intergenic |
| CAGATTCAGTGGAATCTGTA+AGG | 0.450140 | 7_3:+63863966 | Msa1116240:CDS |
| TCATTACCATGTCTGACATC+AGG | 0.466569 | 7_3:+63862933 | None:intergenic |
| TAAGGAGTTCGTCCAAAATC+CGG | 0.471885 | 7_3:-63863007 | None:intergenic |
| ATAAGGTTGTTATAAACATA+AGG | 0.476829 | 7_3:-63863025 | None:intergenic |
| ATAGCCTCTTCACTTAGGCT+TGG | 0.478230 | 7_3:-63864010 | None:intergenic |
| CTTGCATAGCCTCTTCACTT+AGG | 0.480071 | 7_3:-63864015 | None:intergenic |
| GAGAGATATATGATAGAGAA+TGG | 0.482195 | 7_3:+63863139 | Msa1116240:CDS |
| CATGGAGGTTAAATAGCTAC+TGG | 0.492701 | 7_3:+63863074 | Msa1116240:CDS |
| CATCTTATGGCTCATCATAC+CGG | 0.498653 | 7_3:+63862988 | Msa1116240:CDS |
| TGGAGTTCAAAGCTGGAGTA+AGG | 0.503066 | 7_3:+63864174 | Msa1116240:CDS |
| CTGACATCAGGTTTCAGCTC+TGG | 0.505719 | 7_3:+63862945 | Msa1116240:CDS |
| TTTAACTTCTTCAGATTCAG+TGG | 0.515006 | 7_3:+63863955 | Msa1116240:CDS |
| GCCTTGATGGAGTTCAAAGC+TGG | 0.517462 | 7_3:+63864167 | Msa1116240:CDS |
| TCCAGCTTTGAACTCCATCA+AGG | 0.536851 | 7_3:-63864168 | None:intergenic |
| GTCATCATCATCTGAAGCAA+AGG | 0.540729 | 7_3:+63864654 | Msa1116240:CDS |
| TGCTCCAAGCCTAAGTGAAG+AGG | 0.559997 | 7_3:+63864006 | Msa1116240:CDS |
| ACAGAAACTCATTGCTAGCA+AGG | 0.589154 | 7_3:+63863174 | Msa1116240:CDS |
| ATGATCGTTAGCTTAATGTA+CGG | 0.607680 | 7_3:-63862968 | None:intergenic |
| CTGAAACCTGATGTCAGACA+TGG | 0.638276 | 7_3:-63862939 | None:intergenic |
| TGAAACGACAAATAGTCACA+TGG | 0.707197 | 7_3:+63863056 | Msa1116240:CDS |
| AACGACAAATAGTCACATGG+AGG | 0.755899 | 7_3:+63863059 | Msa1116240:CDS |
| TGTATGCAGCAAGAAGTGTG+AGG | 0.814348 | 7_3:-63863924 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAGTAAAGAAATATTAA+AGG | + | chr7_3:63863389-63863408 | Msa1116240:intron | 10.0% |
| !! | TAATAGTAAAGAAATATTAA+AGG | + | chr7_3:63863389-63863408 | Msa1116240:intron | 10.0% |
| !! | TAACTTAAGAAGAATTATAT+AGG | + | chr7_3:63863226-63863245 | Msa1116240:intron | 15.0% |
| !! | AACTTAAGAAGAATTATATA+GGG | + | chr7_3:63863227-63863246 | Msa1116240:intron | 15.0% |
| !!! | AATATTAAAGGTAAAGTTTT+TGG | + | chr7_3:63863401-63863420 | Msa1116240:intron | 15.0% |
| !! | TAAAGTAATAAAACAACAAT+CGG | - | chr7_3:63864445-63864464 | None:intergenic | 15.0% |
| !! | TAACTTAAGAAGAATTATAT+AGG | + | chr7_3:63863226-63863245 | Msa1116240:intron | 15.0% |
| !! | AACTTAAGAAGAATTATATA+GGG | + | chr7_3:63863227-63863246 | Msa1116240:intron | 15.0% |
| !!! | AATATTAAAGGTAAAGTTTT+TGG | + | chr7_3:63863401-63863420 | Msa1116240:intron | 15.0% |
| !! | TAAAGTAATAAAACAACAAT+CGG | - | chr7_3:63864445-63864464 | None:intergenic | 15.0% |
| !! | ATAAGGTTGTTATAAACATA+AGG | - | chr7_3:63863028-63863047 | None:intergenic | 20.0% |
| !! | TCTAAAAATTATTTGTCCTT+GGG | - | chr7_3:63863671-63863690 | None:intergenic | 20.0% |
| !! | GAAATTGTAATTTATGAAAG+AGG | - | chr7_3:63863771-63863790 | None:intergenic | 20.0% |
| !! | ATAAGGTTGTTATAAACATA+AGG | - | chr7_3:63863028-63863047 | None:intergenic | 20.0% |
| !! | TCTAAAAATTATTTGTCCTT+GGG | - | chr7_3:63863671-63863690 | None:intergenic | 20.0% |
| !! | GAAATTGTAATTTATGAAAG+AGG | - | chr7_3:63863771-63863790 | None:intergenic | 20.0% |
| ! | TTCTTTACTATTAGTACCTA+TGG | - | chr7_3:63863382-63863401 | None:intergenic | 25.0% |
| !! | TGATGTCTTTGTATTTTACT+TGG | - | chr7_3:63863564-63863583 | None:intergenic | 25.0% |
| ! | ATACAAAGACATCAAAGATT+TGG | + | chr7_3:63863570-63863589 | Msa1116240:intron | 25.0% |
| ! | GTCTAAAAATTATTTGTCCT+TGG | - | chr7_3:63863672-63863691 | None:intergenic | 25.0% |
| ! | TGAAATATGTGTTTCTTTGT+TGG | + | chr7_3:63863726-63863745 | Msa1116240:intron | 25.0% |
| !!! | ATCTTTTTCGAGAAATTAGA+AGG | + | chr7_3:63863844-63863863 | Msa1116240:intron | 25.0% |
| ! | ATGAAGCAAGAAACAATAAT+CGG | - | chr7_3:63864486-63864505 | None:intergenic | 25.0% |
| ! | TTCATTGTCAAAAATTCAGA+TGG | + | chr7_3:63864501-63864520 | Msa1116240:intron | 25.0% |
| ! | AATATGCAATATTGTTTGTG+TGG | + | chr7_3:63864547-63864566 | Msa1116240:intron | 25.0% |
| ! | TGAGAAATCAATCATATCAA+AGG | - | chr7_3:63864581-63864600 | None:intergenic | 25.0% |
| ! | TTCTTTACTATTAGTACCTA+TGG | - | chr7_3:63863382-63863401 | None:intergenic | 25.0% |
| !! | TGATGTCTTTGTATTTTACT+TGG | - | chr7_3:63863564-63863583 | None:intergenic | 25.0% |
| ! | ATACAAAGACATCAAAGATT+TGG | + | chr7_3:63863570-63863589 | Msa1116240:intron | 25.0% |
| ! | GTCTAAAAATTATTTGTCCT+TGG | - | chr7_3:63863672-63863691 | None:intergenic | 25.0% |
| ! | TGAAATATGTGTTTCTTTGT+TGG | + | chr7_3:63863726-63863745 | Msa1116240:intron | 25.0% |
| !!! | ATCTTTTTCGAGAAATTAGA+AGG | + | chr7_3:63863844-63863863 | Msa1116240:intron | 25.0% |
| ! | ATGAAGCAAGAAACAATAAT+CGG | - | chr7_3:63864486-63864505 | None:intergenic | 25.0% |
| ! | TTCATTGTCAAAAATTCAGA+TGG | + | chr7_3:63864501-63864520 | Msa1116240:intron | 25.0% |
| ! | AATATGCAATATTGTTTGTG+TGG | + | chr7_3:63864547-63864566 | Msa1116240:intron | 25.0% |
| ! | TGAGAAATCAATCATATCAA+AGG | - | chr7_3:63864581-63864600 | None:intergenic | 25.0% |
| ! | ATGATCGTTAGCTTAATGTA+CGG | - | chr7_3:63862971-63862990 | None:intergenic | 30.0% |
| TTAAGCTAACGATCATCTTA+TGG | + | chr7_3:63862975-63862994 | Msa1116240:CDS | 30.0% | |
| GAGAGATATATGATAGAGAA+TGG | + | chr7_3:63863139-63863158 | Msa1116240:CDS | 30.0% | |
| TGATAACTCTATATCTGCAT+TGG | + | chr7_3:63863267-63863286 | Msa1116240:intron | 30.0% | |
| ! | ACATTTAGAGTGCTTAATGA+GGG | + | chr7_3:63863504-63863523 | Msa1116240:intron | 30.0% |
| TACATAGCAGAAATTCTTTG+AGG | + | chr7_3:63863799-63863818 | Msa1116240:intron | 30.0% | |
| TCTGAAGAAGTTAAAATCTC+TGG | - | chr7_3:63863950-63863969 | None:intergenic | 30.0% | |
| ! | TTTAACTTCTTCAGATTCAG+TGG | + | chr7_3:63863955-63863974 | Msa1116240:CDS | 30.0% |
| CTGATCATATGGTGATTAAT+CGG | - | chr7_3:63864245-63864264 | None:intergenic | 30.0% | |
| CTTTATTATGCTATGTACGT+CGG | - | chr7_3:63864271-63864290 | None:intergenic | 30.0% | |
| TGTCAAAAATTCAGATGGTT+AGG | + | chr7_3:63864506-63864525 | Msa1116240:intron | 30.0% | |
| !!! | CAATTGTTTTGGCTCATTTT+CGG | - | chr7_3:63864626-63864645 | None:intergenic | 30.0% |
| ! | GACTTCAACATCAATTGTTT+TGG | - | chr7_3:63864637-63864656 | None:intergenic | 30.0% |
| ! | ATGATCGTTAGCTTAATGTA+CGG | - | chr7_3:63862971-63862990 | None:intergenic | 30.0% |
| TTAAGCTAACGATCATCTTA+TGG | + | chr7_3:63862975-63862994 | Msa1116240:CDS | 30.0% | |
| GAGAGATATATGATAGAGAA+TGG | + | chr7_3:63863139-63863158 | Msa1116240:CDS | 30.0% | |
| TGATAACTCTATATCTGCAT+TGG | + | chr7_3:63863267-63863286 | Msa1116240:intron | 30.0% | |
| ! | ACATTTAGAGTGCTTAATGA+GGG | + | chr7_3:63863504-63863523 | Msa1116240:intron | 30.0% |
| TACATAGCAGAAATTCTTTG+AGG | + | chr7_3:63863799-63863818 | Msa1116240:intron | 30.0% | |
| TCTGAAGAAGTTAAAATCTC+TGG | - | chr7_3:63863950-63863969 | None:intergenic | 30.0% | |
| ! | TTTAACTTCTTCAGATTCAG+TGG | + | chr7_3:63863955-63863974 | Msa1116240:CDS | 30.0% |
| CTGATCATATGGTGATTAAT+CGG | - | chr7_3:63864245-63864264 | None:intergenic | 30.0% | |
| CTTTATTATGCTATGTACGT+CGG | - | chr7_3:63864271-63864290 | None:intergenic | 30.0% | |
| TGTCAAAAATTCAGATGGTT+AGG | + | chr7_3:63864506-63864525 | Msa1116240:intron | 30.0% | |
| !!! | CAATTGTTTTGGCTCATTTT+CGG | - | chr7_3:63864626-63864645 | None:intergenic | 30.0% |
| ! | GACTTCAACATCAATTGTTT+TGG | - | chr7_3:63864637-63864656 | None:intergenic | 30.0% |
| ! | TGTGACTATTTGTCGTTTCA+TGG | - | chr7_3:63863056-63863075 | None:intergenic | 35.0% |
| TGAAACGACAAATAGTCACA+TGG | + | chr7_3:63863056-63863075 | Msa1116240:CDS | 35.0% | |
| ! | GACATTTAGAGTGCTTAATG+AGG | + | chr7_3:63863503-63863522 | Msa1116240:intron | 35.0% |
| CTTAATCCTGTGCAGAAAAA+TGG | + | chr7_3:63863529-63863548 | Msa1116240:intron | 35.0% | |
| CAAAGACATCAAAGATTTGG+AGG | + | chr7_3:63863573-63863592 | Msa1116240:intron | 35.0% | |
| TGAATGAATCCTTACTTGCT+TGG | - | chr7_3:63863626-63863645 | None:intergenic | 35.0% | |
| GATTTCAGTCACAATATGTC+AGG | + | chr7_3:63863694-63863713 | Msa1116240:intron | 35.0% | |
| AGAATTTCTGCTATGTATGC+AGG | - | chr7_3:63863796-63863815 | None:intergenic | 35.0% | |
| TGTGAGGTCTAAATCTTTCA+AGG | - | chr7_3:63863911-63863930 | None:intergenic | 35.0% | |
| CATCTGCAGAAAAATTAGAG+AGG | - | chr7_3:63864107-63864126 | None:intergenic | 35.0% | |
| GCAGATGATGATTACATATC+AGG | + | chr7_3:63864120-63864139 | Msa1116240:intron | 35.0% | |
| ! | TGTGACTATTTGTCGTTTCA+TGG | - | chr7_3:63863056-63863075 | None:intergenic | 35.0% |
| TGAAACGACAAATAGTCACA+TGG | + | chr7_3:63863056-63863075 | Msa1116240:CDS | 35.0% | |
| ! | GACATTTAGAGTGCTTAATG+AGG | + | chr7_3:63863503-63863522 | Msa1116240:intron | 35.0% |
| CTTAATCCTGTGCAGAAAAA+TGG | + | chr7_3:63863529-63863548 | Msa1116240:intron | 35.0% | |
| CAAAGACATCAAAGATTTGG+AGG | + | chr7_3:63863573-63863592 | Msa1116240:intron | 35.0% | |
| TGAATGAATCCTTACTTGCT+TGG | - | chr7_3:63863626-63863645 | None:intergenic | 35.0% | |
| GATTTCAGTCACAATATGTC+AGG | + | chr7_3:63863694-63863713 | Msa1116240:intron | 35.0% | |
| AGAATTTCTGCTATGTATGC+AGG | - | chr7_3:63863796-63863815 | None:intergenic | 35.0% | |
| TGTGAGGTCTAAATCTTTCA+AGG | - | chr7_3:63863911-63863930 | None:intergenic | 35.0% | |
| CATCTGCAGAAAAATTAGAG+AGG | - | chr7_3:63864107-63864126 | None:intergenic | 35.0% | |
| GCAGATGATGATTACATATC+AGG | + | chr7_3:63864120-63864139 | Msa1116240:intron | 35.0% | |
| CATCTTATGGCTCATCATAC+CGG | + | chr7_3:63862988-63863007 | Msa1116240:CDS | 40.0% | |
| TAAGGAGTTCGTCCAAAATC+CGG | - | chr7_3:63863010-63863029 | None:intergenic | 40.0% | |
| AACGACAAATAGTCACATGG+AGG | + | chr7_3:63863059-63863078 | Msa1116240:CDS | 40.0% | |
| CATGGAGGTTAAATAGCTAC+TGG | + | chr7_3:63863074-63863093 | Msa1116240:CDS | 40.0% | |
| GCTAGCAATGAGTTTCTGTA+AGG | - | chr7_3:63863173-63863192 | None:intergenic | 40.0% | |
| ACAGAAACTCATTGCTAGCA+AGG | + | chr7_3:63863174-63863193 | Msa1116240:CDS | 40.0% | |
| TTCTACCTGTCTTAGTCTCA+TGG | + | chr7_3:63863479-63863498 | Msa1116240:intron | 40.0% | |
| !! | CTTTCTCCATTTTTCTGCAC+AGG | - | chr7_3:63863538-63863557 | None:intergenic | 40.0% |
| ATGTGTTTCTTTGTTGGCCA+AGG | + | chr7_3:63863732-63863751 | Msa1116240:intron | 40.0% | |
| TAGAAGGATTCATCACGTGT+AGG | + | chr7_3:63863860-63863879 | Msa1116240:intron | 40.0% | |
| CAGATTCAGTGGAATCTGTA+AGG | + | chr7_3:63863966-63863985 | Msa1116240:CDS | 40.0% | |
| AGTTCTATTGCAACCTGCTT+AGG | + | chr7_3:63864078-63864097 | Msa1116240:intron | 40.0% | |
| ATTAGAGAGGTAACCTAAGC+AGG | - | chr7_3:63864094-63864113 | None:intergenic | 40.0% | |
| AAGTCGTTGTGCAAGTATCT+TGG | - | chr7_3:63864346-63864365 | None:intergenic | 40.0% | |
| ! | GTCATCATCATCTGAAGCAA+AGG | + | chr7_3:63864654-63864673 | Msa1116240:CDS | 40.0% |
| CATCTTATGGCTCATCATAC+CGG | + | chr7_3:63862988-63863007 | Msa1116240:CDS | 40.0% | |
| TAAGGAGTTCGTCCAAAATC+CGG | - | chr7_3:63863010-63863029 | None:intergenic | 40.0% | |
| AACGACAAATAGTCACATGG+AGG | + | chr7_3:63863059-63863078 | Msa1116240:CDS | 40.0% | |
| CATGGAGGTTAAATAGCTAC+TGG | + | chr7_3:63863074-63863093 | Msa1116240:CDS | 40.0% | |
| GCTAGCAATGAGTTTCTGTA+AGG | - | chr7_3:63863173-63863192 | None:intergenic | 40.0% | |
| ACAGAAACTCATTGCTAGCA+AGG | + | chr7_3:63863174-63863193 | Msa1116240:CDS | 40.0% | |
| TTCTACCTGTCTTAGTCTCA+TGG | + | chr7_3:63863479-63863498 | Msa1116240:intron | 40.0% | |
| !! | CTTTCTCCATTTTTCTGCAC+AGG | - | chr7_3:63863538-63863557 | None:intergenic | 40.0% |
| ATGTGTTTCTTTGTTGGCCA+AGG | + | chr7_3:63863732-63863751 | Msa1116240:intron | 40.0% | |
| TAGAAGGATTCATCACGTGT+AGG | + | chr7_3:63863860-63863879 | Msa1116240:intron | 40.0% | |
| CAGATTCAGTGGAATCTGTA+AGG | + | chr7_3:63863966-63863985 | Msa1116240:CDS | 40.0% | |
| AGTTCTATTGCAACCTGCTT+AGG | + | chr7_3:63864078-63864097 | Msa1116240:intron | 40.0% | |
| ATTAGAGAGGTAACCTAAGC+AGG | - | chr7_3:63864094-63864113 | None:intergenic | 40.0% | |
| AAGTCGTTGTGCAAGTATCT+TGG | - | chr7_3:63864346-63864365 | None:intergenic | 40.0% | |
| ! | GTCATCATCATCTGAAGCAA+AGG | + | chr7_3:63864654-63864673 | Msa1116240:CDS | 40.0% |
| ! | TGGCTCATCATACCGGATTT+TGG | + | chr7_3:63862995-63863014 | Msa1116240:CDS | 45.0% |
| GTCGTTTCATGGAGCGAATA+AGG | - | chr7_3:63863045-63863064 | None:intergenic | 45.0% | |
| ! | TCCTTTGTCGCTTCTACATC+AGG | - | chr7_3:63863357-63863376 | None:intergenic | 45.0% |
| GAAGCGACAAAGGAAACCAT+AGG | + | chr7_3:63863363-63863382 | Msa1116240:intron | 45.0% | |
| TGTCACCATGAGACTAAGAC+AGG | - | chr7_3:63863487-63863506 | None:intergenic | 45.0% | |
| TTCCTGCAACCAAGCAAGTA+AGG | + | chr7_3:63863614-63863633 | Msa1116240:intron | 45.0% | |
| ATCCTTACTTGCTTGGTTGC+AGG | - | chr7_3:63863619-63863638 | None:intergenic | 45.0% | |
| CTGCAAGTAGAAATCTCCCA+AGG | + | chr7_3:63863652-63863671 | Msa1116240:intron | 45.0% | |
| !! | TGTAGGAGCATTCCCTCATA+AGG | + | chr7_3:63863877-63863896 | Msa1116240:intron | 45.0% |
| ! | AAGGATGTGCAGCCTTATGA+GGG | - | chr7_3:63863892-63863911 | None:intergenic | 45.0% |
| ! | TGTATGCAGCAAGAAGTGTG+AGG | - | chr7_3:63863927-63863946 | None:intergenic | 45.0% |
| ATAGCCTCTTCACTTAGGCT+TGG | - | chr7_3:63864013-63864032 | None:intergenic | 45.0% | |
| CTTGCATAGCCTCTTCACTT+AGG | - | chr7_3:63864018-63864037 | None:intergenic | 45.0% | |
| !! | TCCAGCTTTGAACTCCATCA+AGG | - | chr7_3:63864171-63864190 | None:intergenic | 45.0% |
| TGGAGTTCAAAGCTGGAGTA+AGG | + | chr7_3:63864174-63864193 | Msa1116240:CDS | 45.0% | |
| TACGTCGGAAGCTGATCATA+TGG | - | chr7_3:63864256-63864275 | None:intergenic | 45.0% | |
| ! | TGGCTCATCATACCGGATTT+TGG | + | chr7_3:63862995-63863014 | Msa1116240:CDS | 45.0% |
| GTCGTTTCATGGAGCGAATA+AGG | - | chr7_3:63863045-63863064 | None:intergenic | 45.0% | |
| ! | TCCTTTGTCGCTTCTACATC+AGG | - | chr7_3:63863357-63863376 | None:intergenic | 45.0% |
| GAAGCGACAAAGGAAACCAT+AGG | + | chr7_3:63863363-63863382 | Msa1116240:intron | 45.0% | |
| TGTCACCATGAGACTAAGAC+AGG | - | chr7_3:63863487-63863506 | None:intergenic | 45.0% | |
| TTCCTGCAACCAAGCAAGTA+AGG | + | chr7_3:63863614-63863633 | Msa1116240:intron | 45.0% | |
| ATCCTTACTTGCTTGGTTGC+AGG | - | chr7_3:63863619-63863638 | None:intergenic | 45.0% | |
| CTGCAAGTAGAAATCTCCCA+AGG | + | chr7_3:63863652-63863671 | Msa1116240:intron | 45.0% | |
| !! | TGTAGGAGCATTCCCTCATA+AGG | + | chr7_3:63863877-63863896 | Msa1116240:intron | 45.0% |
| ! | AAGGATGTGCAGCCTTATGA+GGG | - | chr7_3:63863892-63863911 | None:intergenic | 45.0% |
| ! | TGTATGCAGCAAGAAGTGTG+AGG | - | chr7_3:63863927-63863946 | None:intergenic | 45.0% |
| ATAGCCTCTTCACTTAGGCT+TGG | - | chr7_3:63864013-63864032 | None:intergenic | 45.0% | |
| CTTGCATAGCCTCTTCACTT+AGG | - | chr7_3:63864018-63864037 | None:intergenic | 45.0% | |
| !! | TCCAGCTTTGAACTCCATCA+AGG | - | chr7_3:63864171-63864190 | None:intergenic | 45.0% |
| TGGAGTTCAAAGCTGGAGTA+AGG | + | chr7_3:63864174-63864193 | Msa1116240:CDS | 45.0% | |
| TACGTCGGAAGCTGATCATA+TGG | - | chr7_3:63864256-63864275 | None:intergenic | 45.0% | |
| CTGACATCAGGTTTCAGCTC+TGG | + | chr7_3:63862945-63862964 | Msa1116240:CDS | 50.0% | |
| GCCTGATGTAGAAGCGACAA+AGG | + | chr7_3:63863353-63863372 | Msa1116240:intron | 50.0% | |
| GTTGGCCAAGGTGAAAGAGT+TGG | + | chr7_3:63863744-63863763 | Msa1116240:intron | 50.0% | |
| GAGGTCCAACTCTTTCACCT+TGG | - | chr7_3:63863752-63863771 | None:intergenic | 50.0% | |
| ! | CAAGGATGTGCAGCCTTATG+AGG | - | chr7_3:63863893-63863912 | None:intergenic | 50.0% |
| TGCTCCAAGCCTAAGTGAAG+AGG | + | chr7_3:63864006-63864025 | Msa1116240:CDS | 50.0% | |
| CACTGACACAAGAGCCTTGA+TGG | + | chr7_3:63864154-63864173 | Msa1116240:CDS | 50.0% | |
| GCCTTGATGGAGTTCAAAGC+TGG | + | chr7_3:63864167-63864186 | Msa1116240:CDS | 50.0% | |
| CTGACATCAGGTTTCAGCTC+TGG | + | chr7_3:63862945-63862964 | Msa1116240:CDS | 50.0% | |
| GCCTGATGTAGAAGCGACAA+AGG | + | chr7_3:63863353-63863372 | Msa1116240:intron | 50.0% | |
| GTTGGCCAAGGTGAAAGAGT+TGG | + | chr7_3:63863744-63863763 | Msa1116240:intron | 50.0% | |
| GAGGTCCAACTCTTTCACCT+TGG | - | chr7_3:63863752-63863771 | None:intergenic | 50.0% | |
| ! | CAAGGATGTGCAGCCTTATG+AGG | - | chr7_3:63863893-63863912 | None:intergenic | 50.0% |
| TGCTCCAAGCCTAAGTGAAG+AGG | + | chr7_3:63864006-63864025 | Msa1116240:CDS | 50.0% | |
| CACTGACACAAGAGCCTTGA+TGG | + | chr7_3:63864154-63864173 | Msa1116240:CDS | 50.0% | |
| GCCTTGATGGAGTTCAAAGC+TGG | + | chr7_3:63864167-63864186 | Msa1116240:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 63862941 | 63864699 | 63862941 | ID=Msa1116240;Name=Msa1116240 |
| chr7_3 | mRNA | 63862941 | 63864699 | 63862941 | ID=Msa1116240-mRNA-1;Parent=Msa1116240;Name=Msa1116240-mRNA-1;_AED=0.62;_eAED=0.62;_QI=0|0|0|0.5|0.33|0.75|4|0|179 |
| chr7_3 | exon | 63862941 | 63863195 | 63862941 | ID=Msa1116240-mRNA-1:exon:15033;Parent=Msa1116240-mRNA-1 |
| chr7_3 | exon | 63863923 | 63864050 | 63863923 | ID=Msa1116240-mRNA-1:exon:15034;Parent=Msa1116240-mRNA-1 |
| chr7_3 | exon | 63864142 | 63864211 | 63864142 | ID=Msa1116240-mRNA-1:exon:15035;Parent=Msa1116240-mRNA-1 |
| chr7_3 | exon | 63864613 | 63864699 | 63864613 | ID=Msa1116240-mRNA-1:exon:15036;Parent=Msa1116240-mRNA-1 |
| chr7_3 | CDS | 63862941 | 63863195 | 63862941 | ID=Msa1116240-mRNA-1:cds;Parent=Msa1116240-mRNA-1 |
| chr7_3 | CDS | 63863923 | 63864050 | 63863923 | ID=Msa1116240-mRNA-1:cds;Parent=Msa1116240-mRNA-1 |
| chr7_3 | CDS | 63864142 | 63864211 | 63864142 | ID=Msa1116240-mRNA-1:cds;Parent=Msa1116240-mRNA-1 |
| chr7_3 | CDS | 63864613 | 63864699 | 63864613 | ID=Msa1116240-mRNA-1:cds;Parent=Msa1116240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
