AlfalfaGEDB | Msa1116250

M. sativa cultivar zhongmu-4 / Msa1116250

KEGG: K17279
GO: GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700
PFAM: PF00847.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116250	XP_013468504.1	65.217	138	23	3	1	125	78	203	2.61e-46	164
Msa1116250	XP_013468504.1	90.244	41	4	0	202	242	35	75	1.26e-12	76.3

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116250	sp\|Q8LDC8\|ERF92_ARATH	52.885	104	31	2	6	94	81	181	2.44e-24	99.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116250	A0A072VLN9	65.217	138	23	3	1	125	78	203	1.24e-46	164
Msa1116250	A0A072VLN9	90.244	41	4	0	202	242	35	75	6.02e-13	76.3

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1116250	TF	AP2/ERF-ERF

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0142220	Msa1116250	0.805825	1.107393e-49	-8.615850e-47
Msa0214300	Msa1116250	0.803301	3.720906e-49	-8.615850e-47
Msa0294030	Msa1116250	0.800619	1.324001e-48	-8.615850e-47
Msa0386580	Msa1116250	0.818259	2.151680e-52	-8.615850e-47
Msa0458090	Msa1116250	0.823438	1.384897e-53	-8.615850e-47
Msa0766630	Msa1116250	0.822664	2.098376e-53	-8.615850e-47
Msa0810540	Msa1116250	0.802372	5.789669e-49	-8.615850e-47
Msa1116240	Msa1116250	0.919413	4.645943e-87	-8.615850e-47
Msa1116250	Msa1116260	0.904532	1.112225e-79	-8.615850e-47
Msa1116250	Msa1251910	0.802421	5.655323e-49	-8.615850e-47

Showing 1 to 10 of 10 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116250	MtrunA17_Chr1g0184031	65.217	138	23	3	1	125	78	203	2.40e-50	164
Msa1116250	MtrunA17_Chr1g0184031	90.244	41	4	0	202	242	35	75	1.16e-16	76.3
Msa1116250	MtrunA17_Chr1g0184011	63.309	139	25	4	1	125	78	204	3.37e-48	158
Msa1116250	MtrunA17_Chr1g0184011	92.857	42	3	0	202	243	35	76	1.10e-18	81.6
Msa1116250	MtrunA17_Chr4g0049701	84.337	83	13	0	107	189	69	151	6.56e-46	155
Msa1116250	MtrunA17_Chr1g0183981	66.667	120	26	4	1	107	70	188	3.63e-43	145
Msa1116250	MtrunA17_Chr4g0049671	72.727	88	24	0	107	194	63	150	1.20e-38	142
Msa1116250	MtrunA17_Chr1g0184071	66.000	100	20	2	3	89	65	163	2.98e-34	121
Msa1116250	MtrunA17_Chr4g0049651	67.073	82	27	0	107	188	72	153	1.46e-31	121
Msa1116250	MtrunA17_Chr1g0184061	63.636	99	23	3	1	87	72	169	8.36e-31	113

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1116250	AT3G23240.1	52.885	104	31	2	6	94	81	181	2.48e-25	99.8
Msa1116250	AT2G31230.1	53.191	94	31	2	1	81	80	173	1.72e-22	92.8
Msa1116250	AT4G17500.1	70.370	54	16	0	7	60	148	201	6.56e-19	83.6
Msa1116250	AT5G43410.1	56.716	67	26	1	3	66	11	77	7.16e-19	80.1
Msa1116250	AT5G47220.1	70.370	54	16	0	7	60	117	170	1.40e-18	82.4
Msa1116250	AT5G47230.1	66.071	56	19	0	3	58	152	207	1.66e-18	83.2
Msa1116250	AT2G44840.1	38.393	112	66	1	7	115	92	203	5.32e-18	80.5
Msa1116250	AT5G51190.1	63.158	57	21	0	2	58	67	123	5.67e-18	80.1
Msa1116250	AT4G17490.1	62.712	59	22	0	3	61	133	191	1.76e-17	80.1
Msa1116250	AT4G18450.1	60.000	60	24	0	7	66	110	169	2.23e-17	80.1

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Find 34 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGACAAATAGTCACATGG+AGG	0.755899	7_3:+63869350	Msa1116250:CDS
AATATGCAATATTGTTTGTG+TGG	0.574428	7_3:+63870839	Msa1116250:CDS
AATCAAAAGTCTTCATATAT+AGG	0.378865	7_3:+63864703	Msa1116250:CDS
ACACAACAAGAAGAGGAAGA+AGG	0.533196	7_3:+63864770	Msa1116250:CDS
ACAGAAACTCATTGCTAGCA+AGG	0.589154	7_3:+63869465	Msa1116250:CDS
AGAGGAAGAAGGGTTTGGCT+TGG	0.531425	7_3:+63864781	Msa1116250:CDS
AGATTCAATATGATTGCAGA+GGG	0.557172	7_3:+63864920	Msa1116250:CDS
AGGGAAACAAGATCAATCAG+AGG	0.654836	7_3:+63865021	Msa1116250:CDS
ATAAGGTTGTTATAAACATA+AGG	0.476829	7_3:-63869316	None:intergenic
ATCAGAGACACAACAAGAAG+AGG	0.520617	7_3:+63864763	Msa1116250:CDS

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGATTCAATATGATTGCAGA+GGG	+	chr7_3:63864920-63864939	Msa1116250:CDS	30.0%
CAAAGAAAGATGTTATCCAA+AGG	+	chr7_3:63864983-63865002	Msa1116250:CDS	30.0%
AAAAAAATATTGCTGACAGG+AGG	+	chr7_3:63865547-63865566	Msa1116250:intron	30.0%
GAGAAAGAAGAAAGAAGAAT+GGG	+	chr7_3:63866143-63866162	Msa1116250:intron	30.0%
TTGATGAATGAAGAACAAAC+AGG	-	chr7_3:63866208-63866227	None:intergenic	30.0%
GTTTGTTCTTCATTCATCAA+AGG	+	chr7_3:63866208-63866227	Msa1116250:intron	30.0%
AAGCTACCATAAGTGATTAT+TGG	+	chr7_3:63866636-63866655	Msa1116250:intron	30.0%
AGCTACCATAAGTGATTATT+GGG	+	chr7_3:63866637-63866656	Msa1116250:intron	30.0%
TAACACCCAATAATCACTTA+TGG	-	chr7_3:63866645-63866664	None:intergenic	30.0%
TGTTAAAATTGTTGTAGGAG+TGG	+	chr7_3:63867315-63867334	Msa1116250:intron	30.0%

Showing 1 to 10 of 366 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	63864700	63870991	63864700	ID=Msa1116250;Name=Msa1116250
chr7_3	mRNA	63864700	63870991	63864700	ID=Msa1116250-mRNA-1;Parent=Msa1116250;Name=Msa1116250-mRNA-1;_AED=0.34;_eAED=0.41;_QI=0\|0\|0\|1\|0\|0.5\|4\|0\|243
chr7_3	exon	63864700	63864865	63864700	ID=Msa1116250-mRNA-1:exon:15027;Parent=Msa1116250-mRNA-1
chr7_3	exon	63864900	63865051	63864900	ID=Msa1116250-mRNA-1:exon:15028;Parent=Msa1116250-mRNA-1
chr7_3	exon	63869253	63869486	63869253	ID=Msa1116250-mRNA-1:exon:15029;Parent=Msa1116250-mRNA-1
chr7_3	exon	63870812	63870991	63870812	ID=Msa1116250-mRNA-1:exon:15030;Parent=Msa1116250-mRNA-1
chr7_3	CDS	63864700	63864865	63864700	ID=Msa1116250-mRNA-1:cds;Parent=Msa1116250-mRNA-1
chr7_3	CDS	63864900	63865051	63864900	ID=Msa1116250-mRNA-1:cds;Parent=Msa1116250-mRNA-1
chr7_3	CDS	63869253	63869486	63869253	ID=Msa1116250-mRNA-1:cds;Parent=Msa1116250-mRNA-1
chr7_3	CDS	63870812	63870991	63870812	ID=Msa1116250-mRNA-1:cds;Parent=Msa1116250-mRNA-1

Gene Sequence

>Msa1116250

ATGAATCAAAAGTCTTCATATATAGGTGTGAGAAAAAGACCTAGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGAAGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGTTGAGGATGCTGCTTTGGCTTACGATCAAGCTGCATTTTTAATGAGAGGGTCAAAGGATCTTTGCAAGAGATTCAATATGATTGCAGAGGGGTTTTCACCTGAACTTGCACTCAAGGAGAGACACTGTGAACAAAGAAAGATGTTATCCAAAGGTGTAAAAAATAAAGCAGGGAAACAAGATCAATCAGAGGGATCAAGTCTCTGGCCGTACATTAAGCTAACGATCATCTTATGGCTCATCATACCGGATTTTGGACGAACTCCTTATGTTTATAACAACCTTATTCGCTCCATGAAACGACAAATAGTCACATGGAGGTTAAATAGCTACTGGAGAGATTGTTTTGCTGAGAAAGATAGCTTTTTACTGCATGCAGAGAGATATATGATAGAGAATGGAACTGAAACCTTACAGAAACTCATTGCTAGCAAGATGGTTAGGTGTTTGATTACATTGCTAAATATGCAATATTGTTTGTGTGGTTTTCTTTCCTTTGATATGATTGATTTCTCATCGAGTTCGCAGACAACAATTACCGAAAATGAGCCAAAACAATTGATGTTGAAGTCATCATCATCTGAAGCAAAGGAAGTGTTGCAGAATAATAATTAG

Protein sequence

>Msa1116250

MNQKSSYIGVRKRPRGKYAAEIRDTTRRGRRVWLGTFDSVEDAALAYDQAAFLMRGSKDLCKRFNMIAEGFSPELALKERHCEQRKMLSKGVKNKAGKQDQSEGSSLWPYIKLTIILWLIIPDFGRTPYVYNNLIRSMKRQIVTWRLNSYWRDCFAEKDSFLLHAERYMIENGTETLQKLIASKMVRCLITLLNMQYCLCGFLSFDMIDFSSSSQTTITENEPKQLMLKSSSSEAKEVLQNNN*