AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116620 MtrunA17_Chr7g0259091 84.737 190 13 3 1 174 1 190 1.10e-109 317
Msa1116620 MtrunA17_Chr7g0259091 98.582 141 2 0 172 312 45 185 8.56e-100 291
Msa1116620 MtrunA17_Chr7g0259101 86.243 189 11 2 1 174 201 389 1.30e-109 324
Msa1116620 MtrunA17_Chr7g0259101 82.143 196 18 4 1 180 1 195 5.95e-106 315
Msa1116620 MtrunA17_Chr7g0259101 92.568 148 11 0 172 319 45 192 1.18e-95 288
Msa1116620 MtrunA17_Chr7g0259101 92.568 148 11 0 172 319 244 391 1.04e-94 286
Msa1116620 MtrunA17_Chr7g0259071 68.254 189 43 3 1 174 1 187 2.68e-85 255
Msa1116620 MtrunA17_Chr7g0259071 75.000 148 37 0 172 319 42 189 3.23e-80 242
Msa1116620 MtrunA17_Chr7g0259121 56.209 153 61 3 172 319 40 191 5.90e-54 176
Msa1116620 MtrunA17_Chr7g0259121 52.326 172 60 5 23 174 20 189 1.31e-52 172
Msa1116620 MtrunA17_Chr4g0005081 51.773 141 67 1 172 312 49 188 1.92e-47 158
Msa1116620 MtrunA17_Chr4g0005081 44.025 159 74 3 29 172 33 191 4.47e-40 139
Msa1116620 MtrunA17_Chr4g0005071 51.773 141 67 1 172 312 48 187 3.93e-46 155
Msa1116620 MtrunA17_Chr4g0005071 44.025 159 74 3 29 172 32 190 1.11e-38 135
Msa1116620 MtrunA17_Chr1g0175911 56.391 133 57 1 172 304 46 177 6.35e-46 154
Msa1116620 MtrunA17_Chr1g0175911 44.792 192 84 7 1 174 1 188 2.36e-44 150
Msa1116620 MtrunA17_Chr4g0037481 54.676 139 61 2 175 312 46 183 1.33e-44 150
Msa1116620 MtrunA17_Chr4g0037481 47.403 154 63 4 42 179 41 192 4.16e-38 134
Msa1116620 MtrunA17_Chr4g0005031 44.318 176 88 3 144 319 54 219 1.41e-43 149
Msa1116620 MtrunA17_Chr4g0005031 46.897 145 63 2 42 172 71 215 3.28e-37 132
Msa1116620 MtrunA17_Chr3g0136641 53.147 143 64 3 172 312 38 179 2.28e-43 147
Msa1116620 MtrunA17_Chr3g0136641 43.617 188 85 7 9 179 5 188 8.01e-39 135
Msa1116620 MtrunA17_Chr3g0136631 50.694 144 67 3 172 312 38 180 5.18e-43 146
Msa1116620 MtrunA17_Chr3g0136631 42.857 189 86 7 9 179 5 189 1.16e-38 135
Msa1116620 MtrunA17_Chr4g0005011 52.632 133 62 1 172 304 51 182 3.02e-42 145
Msa1116620 MtrunA17_Chr4g0005011 43.195 169 74 6 29 181 35 197 2.44e-36 129
Msa1116620 MtrunA17_Chr4g0005041 48.000 150 73 3 172 319 50 196 5.48e-42 144
Msa1116620 MtrunA17_Chr4g0005041 43.750 160 73 5 29 172 34 192 2.76e-36 129
Msa1116620 MtrunA17_Chr7g0243501 47.170 159 82 2 159 317 32 188 5.90e-38 133
Msa1116620 MtrunA17_Chr7g0243501 43.523 193 85 7 10 179 1 192 7.98e-37 130
Msa1116620 MtrunA17_Chr1g0177051 49.275 138 67 3 175 311 41 176 6.92e-38 133
Msa1116620 MtrunA17_Chr1g0177051 42.424 165 75 6 33 179 24 186 2.43e-31 116
Msa1116620 MtrunA17_Chr5g0446751 45.342 161 78 5 160 312 22 180 3.60e-37 131
Msa1116620 MtrunA17_Chr5g0446751 40.541 185 85 7 9 172 3 183 2.21e-32 119
Msa1116620 MtrunA17_Chr4g0005111 47.059 136 70 2 175 310 46 179 4.28e-37 131
Msa1116620 MtrunA17_Chr4g0005111 38.202 178 93 4 11 172 8 184 1.06e-33 122
Msa1116620 MtrunA17_Chr3g0085311 50.000 128 61 2 172 299 43 167 1.14e-35 127
Msa1116620 MtrunA17_Chr3g0085311 44.366 142 65 3 44 172 43 183 2.10e-29 111
Msa1116620 MtrunA17_Chr3g0085291 50.000 128 59 2 172 299 43 165 1.68e-35 127
Msa1116620 MtrunA17_Chr3g0085291 44.286 140 66 3 44 172 43 181 3.41e-29 110
Msa1116620 MtrunA17_Chr3g0090231 44.828 145 76 3 172 315 39 180 3.65e-35 126
Msa1116620 MtrunA17_Chr3g0090231 37.634 186 97 8 11 179 3 186 7.06e-28 107
Msa1116620 MtrunA17_Chr4g0005131 40.972 144 83 2 175 317 45 187 1.03e-34 125
Msa1116620 MtrunA17_Chr4g0005131 37.126 167 87 4 28 178 27 191 1.53e-30 114
Msa1116620 MtrunA17_Chr4g0040551 44.138 145 77 3 172 315 39 180 1.59e-34 124
Msa1116620 MtrunA17_Chr4g0040551 36.979 192 102 8 1 179 1 186 1.53e-27 106
Msa1116620 MtrunA17_Chr3g0085301 46.094 128 66 2 172 299 48 172 1.45e-32 119
Msa1116620 MtrunA17_Chr3g0085301 35.632 174 96 5 14 172 16 188 5.41e-26 102
Msa1116620 MtrunA17_Chr3g0085321 45.865 133 67 3 172 304 43 170 4.72e-32 118
Msa1116620 MtrunA17_Chr3g0085321 35.795 176 95 5 14 172 9 183 3.33e-25 100
Msa1116620 MtrunA17_Chr4g0068391 44.615 130 71 1 175 304 35 163 2.25e-27 105
Msa1116620 MtrunA17_Chr4g0068391 34.356 163 83 4 13 161 11 163 3.19e-18 80.9
Msa1116620 MtrunA17_Chr4g0068381 45.082 122 66 1 175 296 35 155 4.17e-27 104
Msa1116620 MtrunA17_Chr4g0068381 38.400 125 63 2 43 153 31 155 8.30e-19 82.8
Msa1116620 MtrunA17_Chr4g0005091 37.654 162 79 5 25 174 20 171 3.50e-26 102
Msa1116620 MtrunA17_Chr4g0005091 37.762 143 74 1 175 317 44 171 1.60e-25 100
Msa1116620 MtrunA17_Chr4g0024961 34.586 133 86 1 172 304 30 161 1.56e-19 84.7
Msa1116620 MtrunA17_Chr4g0024961 29.524 105 69 1 71 170 66 170 2.28e-11 62.0
Msa1116620 MtrunA17_Chr4g0024951 33.824 136 89 1 177 312 35 169 4.16e-19 83.6
Msa1116620 MtrunA17_Chr4g0024951 25.000 184 110 4 1 170 1 170 7.80e-12 63.2
Msa1116620 MtrunA17_Chr1g0169281 38.947 95 56 2 205 299 139 231 8.94e-13 67.4
Msa1116620 MtrunA17_Chr1g0169281 34.409 93 57 1 68 156 139 231 2.07e-11 63.2
Msa1116620 MtrunA17_Chr1g0169511 40.000 95 55 2 205 299 133 225 8.99e-13 67.0
Msa1116620 MtrunA17_Chr1g0169511 37.634 93 54 1 68 156 133 225 8.01e-12 64.3
Msa1116620 MtrunA17_Chr1g0169291 40.000 95 55 2 205 299 133 225 1.33e-12 66.6
Msa1116620 MtrunA17_Chr1g0169291 37.634 93 54 1 68 156 133 225 1.08e-11 63.9
Msa1116620 MtrunA17_Chr4g0030731 37.383 107 66 1 198 304 177 282 9.69e-12 64.7
Msa1116620 MtrunA17_Chr4g0030681 37.383 107 66 1 198 304 178 283 1.00e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116620 AT5G42500.1 56.818 132 56 1 172 303 40 170 2.18e-46 155
Msa1116620 AT5G42500.1 49.697 165 64 5 25 174 22 182 1.03e-42 146
Msa1116620 AT1G65870.1 53.333 150 65 3 172 319 42 188 1.92e-44 150
Msa1116620 AT1G65870.1 50.000 150 59 3 40 174 38 186 1.06e-39 138
Msa1116620 AT1G22900.1 54.545 132 59 1 172 303 48 178 8.58e-43 146
Msa1116620 AT1G22900.1 45.087 173 76 5 17 174 22 190 2.43e-37 132
Msa1116620 AT5G42510.1 53.030 132 61 1 172 303 37 167 1.15e-42 145
Msa1116620 AT5G42510.1 48.428 159 63 5 31 174 25 179 2.91e-39 137
Msa1116620 AT5G49040.1 45.205 146 79 1 172 317 43 187 1.30e-39 138
Msa1116620 AT5G49040.1 38.298 188 90 6 16 179 6 191 1.02e-33 123
Msa1116620 AT3G13662.1 48.905 137 66 2 172 308 40 172 1.49e-39 137
Msa1116620 AT3G13662.1 43.151 146 66 4 32 165 32 172 2.35e-31 116
Msa1116620 AT1G58170.1 46.099 141 75 1 172 312 37 176 1.55e-39 137
Msa1116620 AT1G58170.1 39.891 183 93 4 12 179 5 185 6.45e-35 125
Msa1116620 AT2G21100.1 49.645 141 70 1 172 312 40 179 1.77e-38 135
Msa1116620 AT2G21100.1 39.037 187 94 4 1 172 1 182 2.88e-31 116
Msa1116620 AT2G21100.2 49.645 141 70 1 172 312 40 179 1.77e-38 135
Msa1116620 AT2G21100.2 39.037 187 94 4 1 172 1 182 2.88e-31 116
Msa1116620 AT1G55210.1 46.043 139 71 2 172 310 42 176 4.47e-38 134
Msa1116620 AT1G55210.1 38.251 183 97 6 11 179 7 187 9.68e-35 125
Msa1116620 AT1G55210.2 46.043 139 71 2 172 310 42 176 4.47e-38 134
Msa1116620 AT1G55210.2 38.251 183 97 6 11 179 7 187 9.68e-35 125
Msa1116620 AT3G13650.1 39.560 182 96 4 10 179 7 186 2.13e-36 129
Msa1116620 AT3G13650.1 44.604 139 73 2 172 310 41 175 3.62e-36 129
Msa1116620 AT2G21110.1 43.046 151 79 4 175 319 37 186 4.07e-35 126
Msa1116620 AT2G21110.1 42.069 145 64 3 47 172 37 180 4.01e-30 113
Msa1116620 AT5G49030.3 47.656 128 66 1 172 299 43 169 6.48e-34 132
Msa1116620 AT5G49030.3 38.788 165 76 5 16 156 6 169 5.21e-27 112
Msa1116620 AT4G38700.1 42.384 151 82 3 167 312 31 181 1.29e-32 120
Msa1116620 AT4G38700.1 37.838 185 92 6 8 172 3 184 3.19e-31 116
Msa1116620 AT3G58090.1 45.113 133 72 1 187 319 139 270 1.73e-28 111
Msa1116620 AT3G58090.1 52.941 102 41 2 77 172 166 266 3.31e-24 99.8
Msa1116620 AT3G13660.1 42.727 110 62 1 203 312 8 116 1.77e-25 99.4
Msa1116620 AT3G13660.1 36.800 125 71 3 61 179 3 125 1.17e-21 89.0
Msa1116620 AT4G23690.1 35.433 127 70 5 176 296 42 162 8.98e-12 63.5

Find 92 sgRNAs with CRISPR-Local

Find 362 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCCATTGTTGGCGGGAC+TGG 0.222462 7_3:-64337737 Msa1116620:CDS
GTTAGAGAAATGGCCATTAT+TGG 0.260398 7_3:-64343279 Msa1116620:CDS
TGGCCATTGTTGGCGGGACT+GGG 0.273301 7_3:-64337736 Msa1116620:CDS
TGGAAGTACACTTAGCATAT+TGG 0.334562 7_3:-64337795 Msa1116620:CDS
CTTGAAAACCCAGCATTGTT+GGG 0.345342 7_3:+64343619 None:intergenic
ATAATGGCCATTTCTCTAAC+AGG 0.349831 7_3:+64343282 None:intergenic
AGCTTCAGTCCCACCAATAA+TGG 0.353446 7_3:+64343266 None:intergenic
ACAATGGCCATTTCTCTAAC+AGG 0.358166 7_3:+64337749 None:intergenic
ATGGATGACCCTTTGACGGC+TGG 0.362400 7_3:-64343468 Msa1116620:CDS
ACAAATACCATGCTAGGTTT+TGG 0.370876 7_3:+64338013 None:intergenic
ACAAATACCATGCTAGGTTT+TGG 0.370876 7_3:+64343546 None:intergenic
GTAATACACCTAGCTAATAA+TGG 0.380631 7_3:+64337616 None:intergenic
GGAAGTACACTTAGCATATT+GGG 0.380807 7_3:-64337794 Msa1116620:CDS
ATATATCATATTCCACAATA+TGG 0.386923 7_3:+64337646 None:intergenic
TTCCACAATGGCATCTCCTT+TGG 0.400130 7_3:+64343191 None:intergenic
TCTTGAAAACCCAGCATTGT+TGG 0.400814 7_3:+64343618 None:intergenic
CGTTCAGGACCAGCCGTCAA+TGG 0.424944 7_3:+64337926 None:intergenic
TACTTTCACGACATTGTGTC+AGG 0.427188 7_3:-64338037 Msa1116620:CDS
TACTTTCACGACATTGTGTC+AGG 0.427188 7_3:-64343570 Msa1116620:CDS
AAGCCTATCCCCAACAATGC+TGG 0.431336 7_3:-64343628 Msa1116620:CDS
GGCAGTGACAAGGGATATTA+CGG 0.444661 7_3:+64343665 None:intergenic
TATTCCGTTGATTACACTAA+AGG 0.444889 7_3:-64337674 Msa1116620:CDS
GAGTGAACCTGTTAGAGAAA+TGG 0.463422 7_3:-64337756 Msa1116620:CDS
GAGTGAACCTGTTAGAGAAA+TGG 0.463422 7_3:-64343289 Msa1116620:CDS
TTCACTGATGGAGATTTCAA+TGG 0.465136 7_3:-64337815 Msa1116620:CDS
TTCACTGATGGAGATTTCAA+TGG 0.465136 7_3:-64343348 Msa1116620:CDS
TTCGTATTCCATTATTAGCT+AGG 0.466419 7_3:-64337624 None:intergenic
GTTAGAGAAATGGCCATTGT+TGG 0.468463 7_3:-64337746 Msa1116620:CDS
TGGATGACCCTTTGACGGCT+GGG 0.473571 7_3:-64343467 Msa1116620:CDS
TTCTATATCACAAGAGGAGA+TGG 0.477985 7_3:-64337864 Msa1116620:CDS
TTCTATATCACAAGAGGAGA+TGG 0.477985 7_3:-64343397 Msa1116620:CDS
GGCGATGGATGACCCTTTGA+CGG 0.482950 7_3:-64343472 Msa1116620:CDS
ACAAGTTTCGAGTCACGTTC+AGG 0.491447 7_3:+64337911 None:intergenic
ATATTACGGCGAGGAAAGTA+AGG 0.492766 7_3:+64343679 None:intergenic
ATTCGGGACGGTTGTGGCGA+TGG 0.502476 7_3:-64337954 Msa1116620:CDS
GTTGCCATTCGGGACGGTTG+TGG 0.502902 7_3:-64337960 Msa1116620:CDS
TGAATCAAAACTTGTGGGTA+AGG 0.505874 7_3:-64343436 Msa1116620:CDS
AGAGAAATGGCCATTATTGG+TGG 0.507074 7_3:-64343276 Msa1116620:CDS
AGAGAAATGGCCATTGTTGG+CGG 0.509028 7_3:-64337743 Msa1116620:CDS
AGCCTATCCCCAACAATGCT+GGG 0.510899 7_3:-64343627 Msa1116620:CDS
GGCCATTGTTGGCGGGACTG+GGG 0.511798 7_3:-64337735 Msa1116620:CDS
GAGAAATGGCCATTGTTGGC+GGG 0.513679 7_3:-64337742 Msa1116620:CDS
GTTCAGGACCAGCCGTCAAT+GGG 0.519940 7_3:+64337927 None:intergenic
GGCGATGGATGACCCATTGA+CGG 0.521036 7_3:-64337939 Msa1116620:CDS
GTATTTGTAGCTGAGCCTAA+TGG 0.523113 7_3:-64337998 Msa1116620:CDS
GAACGTGACTCGAAACTTGT+GGG 0.527774 7_3:-64337908 Msa1116620:CDS
AGAGGAGATGGGACTAATGA+TGG 0.528699 7_3:-64337852 Msa1116620:CDS
AGAGGAGATGGGACTAATGA+TGG 0.528699 7_3:-64343385 Msa1116620:CDS
GTTAAAAGAAATGAGAATTG+TGG 0.531863 7_3:+64343701 None:intergenic
TGACTCGAAACTTGTGGGTA+AGG 0.534298 7_3:-64337903 Msa1116620:CDS
ATGGATGACCCATTGACGGC+TGG 0.541350 7_3:-64337935 Msa1116620:CDS
ATTCGGGACAGTTGTGGCGA+TGG 0.545723 7_3:-64343487 Msa1116620:CDS
AAACTTGTGGGTAAGGCTCA+AGG 0.545821 7_3:-64337896 Msa1116620:CDS
AAACTTGTGGGTAAGGCTCA+AGG 0.547993 7_3:-64343429 Msa1116620:CDS
TATTCCGTTGATTATACCAA+AGG 0.550205 7_3:-64343207 Msa1116620:CDS
ATCTCCTTTGGTATAATCAA+CGG 0.551045 7_3:+64343203 None:intergenic
TCAGCTACAAATACCATGCT+AGG 0.557255 7_3:+64338007 None:intergenic
TCAGCTACAAATACCATGCT+AGG 0.557255 7_3:+64343540 None:intergenic
TTACACTTCTATATCACAAG+AGG 0.558364 7_3:-64337870 Msa1116620:CDS
TTACACTTCTATATCACAAG+AGG 0.558364 7_3:-64343403 Msa1116620:CDS
AAATGCGTTGCCATTCGGGA+CGG 0.561926 7_3:-64337966 Msa1116620:CDS
TTGAAAACCCAGCATTGTTG+GGG 0.562104 7_3:+64343620 None:intergenic
ATGACCATGGCATTCACTGA+TGG 0.562304 7_3:-64337827 Msa1116620:CDS
ATGACCATGGCATTCACTGA+TGG 0.562304 7_3:-64343360 Msa1116620:CDS
AGCCCCAGTCCCGCCAACAA+TGG 0.563286 7_3:+64337733 None:intergenic
GAACGTGAATCAAAACTTGT+GGG 0.564741 7_3:-64343441 Msa1116620:CDS
GTAATTAGTGGCAGTGACAA+GGG 0.567205 7_3:+64343656 None:intergenic
AGTAATTAGTGGCAGTGACA+AGG 0.571016 7_3:+64343655 None:intergenic
CTAAAGGAGATGCCATATTG+TGG 0.580025 7_3:-64337658 Msa1116620:CDS
TGAACGTGACTCGAAACTTG+TGG 0.588799 7_3:-64337909 Msa1116620:CDS
ATCGCCACAACCGTCCCGAA+TGG 0.592145 7_3:+64337956 None:intergenic
GTTGCCATTCGGGACAGTTG+TGG 0.592291 7_3:-64343493 Msa1116620:CDS
TCTATATCACAAGAGGAGAT+GGG 0.592301 7_3:-64337863 Msa1116620:CDS
TCTATATCACAAGAGGAGAT+GGG 0.592301 7_3:-64343396 Msa1116620:CDS
GAGAAATGGCCATTATTGGT+GGG 0.597507 7_3:-64343275 Msa1116620:CDS
ATCTCCTTTAGTGTAATCAA+CGG 0.597699 7_3:+64337670 None:intergenic
AACCCAGCATTGTTGGGGAT+AGG 0.607331 7_3:+64343625 None:intergenic
ATCGCCACAACTGTCCCGAA+TGG 0.611420 7_3:+64343489 None:intergenic
CGAACGTGAATCAAAACTTG+TGG 0.618950 7_3:-64343442 Msa1116620:CDS
GTCAGGACCAAAACCTAGCA+TGG 0.622028 7_3:-64338020 Msa1116620:CDS
GTCAGGACCAAAACCTAGCA+TGG 0.622028 7_3:-64343553 Msa1116620:intron
TGTAGCTGAGCCTAATGGCA+AGG 0.630219 7_3:-64337993 Msa1116620:CDS
ATCTCCATCAGTGAATGCCA+TGG 0.633818 7_3:+64337823 None:intergenic
ATCTCCATCAGTGAATGCCA+TGG 0.633818 7_3:+64343356 None:intergenic
TACCAAAGGAGATGCCATTG+TGG 0.635951 7_3:-64343193 Msa1116620:CDS
TGTCGTGAAAGTAAAAGTGA+AGG 0.637192 7_3:+64338047 None:intergenic
TGTCGTGAAAGTAAAAGTGA+AGG 0.637192 7_3:+64343580 None:intergenic
GAGAATTGTGGAGCATGATG+AGG 0.646509 7_3:+64343713 None:intergenic
GAATACATCATATTCCACAA+TGG 0.695532 7_3:+64343179 None:intergenic
ACTAATGATGGTGATGACCA+TGG 0.702330 7_3:-64337840 Msa1116620:CDS
ACTAATGATGGTGATGACCA+TGG 0.702330 7_3:-64343373 Msa1116620:CDS
TGACAAGGGATATTACGGCG+AGG 0.747711 7_3:+64343670 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTATTTATTTTATT+AGG + chr7_3:64340680-64340699 None:intergenic 0.0%
!! AAAAATAAATATATTGAATG+TGG + chr7_3:64338319-64338338 None:intergenic 10.0%
!!! ATTTTTTAGTTTTAATTCAA+CGG - chr7_3:64338333-64338352 Msa1116620:intron 10.0%
!!! AACATTTAAAATAATCAAAA+AGG - chr7_3:64339710-64339729 Msa1116620:intron 10.0%
!! TTTATTAGAATATATTATTG+GGG - chr7_3:64340015-64340034 Msa1116620:intron 10.0%
!! CTTATTTAATACTAAAAAAA+TGG + chr7_3:64340558-64340577 None:intergenic 10.0%
!! TTTATTTATCTTAATAGTTT+GGG + chr7_3:64342590-64342609 None:intergenic 10.0%
!!! TTTTATTTATCTTAATAGTT+TGG + chr7_3:64342591-64342610 None:intergenic 10.0%
!!! TAATTATTATTGTTTTTAAC+GGG + chr7_3:64342891-64342910 None:intergenic 10.0%
!! TTTAGATATATTTCAAAATA+TGG + chr7_3:64342960-64342979 None:intergenic 10.0%
!! GATATGTAAAAAAAAATTGT+AGG + chr7_3:64338763-64338782 None:intergenic 15.0%
!!! AACTAATTGTTTTAATAGTT+TGG - chr7_3:64338918-64338937 Msa1116620:intron 15.0%
!! TTATGATTTATGTTTACTAA+TGG - chr7_3:64339027-64339046 Msa1116620:intron 15.0%
!!! AATCTTAATGGATTTAAATT+TGG - chr7_3:64339173-64339192 Msa1116620:intron 15.0%
!!! TGTCAATTATAGAAATTTTT+TGG - chr7_3:64339205-64339224 Msa1116620:intron 15.0%
!!! CTTATAGTTATAATGTTTTA+TGG + chr7_3:64339491-64339510 None:intergenic 15.0%
!! CATAAAACATTATAACTATA+AGG - chr7_3:64339489-64339508 Msa1116620:intron 15.0%
!!! TAAAATAATCAAAAAGGTAT+TGG - chr7_3:64339716-64339735 Msa1116620:intron 15.0%
!! TTACATTAATTAGATCATTA+TGG + chr7_3:64339797-64339816 None:intergenic 15.0%
!!! TTTTTTTTTTGAGATAAACA+CGG - chr7_3:64340235-64340254 Msa1116620:intron 15.0%
!! CTTAACAAAATTAATAAACA+AGG - chr7_3:64340747-64340766 Msa1116620:intron 15.0%
!! TTAGAAAATTTATTTACGTT+TGG - chr7_3:64341140-64341159 Msa1116620:intron 15.0%
!!! CTGAATTTACTTTTTTTTTT+TGG + chr7_3:64341420-64341439 None:intergenic 15.0%
!!! AACAATATTTTGATTCATAA+GGG + chr7_3:64341644-64341663 None:intergenic 15.0%
!! CACTTATTAATTAACTAAAA+GGG + chr7_3:64342001-64342020 None:intergenic 15.0%
!! TCACTTATTAATTAACTAAA+AGG + chr7_3:64342002-64342021 None:intergenic 15.0%
!!! TTATATTTTGCAATCTAAAA+AGG + chr7_3:64342698-64342717 None:intergenic 15.0%
!!! GAAATATATCTAAAAGTTTT+TGG - chr7_3:64342966-64342985 Msa1116620:intron 15.0%
!! AATAATATGATAGATACGAT+AGG - chr7_3:64338829-64338848 Msa1116620:intron 20.0%
!!! AATTGTTTTAATAGTTTGGA+AGG - chr7_3:64338922-64338941 Msa1116620:intron 20.0%
!! AGATGTTATAACAATCTTAA+TGG - chr7_3:64339161-64339180 Msa1116620:intron 20.0%
!!! TAGGGTTTTATTATGTTTTA+TGG + chr7_3:64339440-64339459 None:intergenic 20.0%
!! AATTAATAGAAACACAGTTT+AGG - chr7_3:64340208-64340227 Msa1116620:intron 20.0%
!!! TCACCTCTAAAAAAAAAAAT+TGG - chr7_3:64340416-64340435 Msa1116620:intron 20.0%
!!! GAACCAATTTTTTTTTTTAG+AGG + chr7_3:64340422-64340441 None:intergenic 20.0%
!! AAAATATTGTCAGGAAAAAA+AGG - chr7_3:64340583-64340602 Msa1116620:intron 20.0%
!!! TTTTTTAGATGGAATTTGTT+AGG - chr7_3:64340639-64340658 Msa1116620:intron 20.0%
!!! ACAACTCAATTCTAAAATTT+TGG + chr7_3:64340721-64340740 None:intergenic 20.0%
!!! AATGCTGGAAATTTTATAAA+CGG + chr7_3:64341011-64341030 None:intergenic 20.0%
!!! GTAAATAAATTTTCTAAGTG+TGG + chr7_3:64341137-64341156 None:intergenic 20.0%
!!! TTCCTTCTTTTTTTTTTTGA+GGG - chr7_3:64341200-64341219 Msa1116620:intron 20.0%
!!! GTTTTTCCTTTTTTTTTTGA+GGG - chr7_3:64341223-64341242 Msa1116620:intron 20.0%
!! AATCAAATATAAGCTTGATT+TGG - chr7_3:64341312-64341331 Msa1116620:intron 20.0%
!!! CAACAATATTTTGATTCATA+AGG + chr7_3:64341645-64341664 None:intergenic 20.0%
!! CTTATGAATCAAAATATTGT+TGG - chr7_3:64341643-64341662 Msa1116620:intron 20.0%
!! TATTAATTAACTAAAAGGGA+AGG + chr7_3:64341997-64342016 None:intergenic 20.0%
!! AGATATATTTCAAAATATGG+TGG + chr7_3:64342957-64342976 None:intergenic 20.0%
!!! ATGAACTAAGAATGTTTTTT+TGG + chr7_3:64343124-64343143 None:intergenic 20.0%
!! AAAAGAAATTAGAAGAGTTA+TGG + chr7_3:64343180-64343199 None:intergenic 20.0%
!! ATATATCATATTCCACAATA+TGG + chr7_3:64343705-64343724 None:intergenic 20.0%
! GTTAAAAGAAATGAGAATTG+TGG + chr7_3:64337650-64337669 None:intergenic 25.0%
!! TAGGCTTTTATAGTAATTAG+TGG + chr7_3:64337707-64337726 None:intergenic 25.0%
! TCAACGGAAAAAAAATATGA+TGG - chr7_3:64338349-64338368 Msa1116620:intron 25.0%
! ACATGTAAGCATATTAGAAA+AGG + chr7_3:64338375-64338394 None:intergenic 25.0%
! TTGAAATGAGTCAAACAAAA+AGG + chr7_3:64338706-64338725 None:intergenic 25.0%
! TAATGGAAAATGTTTACCTT+TGG - chr7_3:64339044-64339063 Msa1116620:intron 25.0%
!! CATTTTCTGCAAATTCAATA+CGG + chr7_3:64339386-64339405 None:intergenic 25.0%
!! TTATAATGTTTTATGGTCTC+TGG + chr7_3:64339484-64339503 None:intergenic 25.0%
! TATAACTATAAGGACTTACA+AGG - chr7_3:64339499-64339518 Msa1116620:intron 25.0%
! ATAACTATAAGGACTTACAA+GGG - chr7_3:64339500-64339519 Msa1116620:intron 25.0%
!!! TTTTGTGACCTCTAAAAAAA+TGG + chr7_3:64339566-64339585 None:intergenic 25.0%
! CATAAAAAAAATCTTAGGAC+CGG - chr7_3:64339746-64339765 Msa1116620:intron 25.0%
!!! ATAATTTTAGTTTCCAAAGC+CGG + chr7_3:64339768-64339787 None:intergenic 25.0%
! TTAAAGATTATTCATTGGTC+TGG + chr7_3:64339831-64339850 None:intergenic 25.0%
! ATACCATATTATATTGTTGC+AGG - chr7_3:64340089-64340108 Msa1116620:intron 25.0%
! TACCATATTATATTGTTGCA+GGG - chr7_3:64340090-64340109 Msa1116620:intron 25.0%
! TAAGTGTACAAAATATTGTC+AGG - chr7_3:64340574-64340593 Msa1116620:intron 25.0%
!! ATGCTGGAAATTTTATAAAC+GGG + chr7_3:64341010-64341029 None:intergenic 25.0%
! GAGTGAAAAAGATGTTTAAA+AGG + chr7_3:64341068-64341087 None:intergenic 25.0%
! CATAAAAAATGTGTGGTATT+TGG - chr7_3:64341165-64341184 Msa1116620:intron 25.0%
!!! CTTCCTTCTTTTTTTTTTTG+AGG - chr7_3:64341199-64341218 Msa1116620:intron 25.0%
!!! TCCTTCTTTTTTTTTTTGAG+GGG - chr7_3:64341201-64341220 Msa1116620:intron 25.0%
!!! GGTTTTTCCTTTTTTTTTTG+AGG - chr7_3:64341222-64341241 Msa1116620:intron 25.0%
! TTCAAACCCTCAAAAAAAAA+AGG + chr7_3:64341232-64341251 None:intergenic 25.0%
! TTAGCGAAAAAATATGAACT+TGG - chr7_3:64341276-64341295 Msa1116620:intron 25.0%
! AAAATTCGATCACTAAACAA+AGG + chr7_3:64341563-64341582 None:intergenic 25.0%
!! GATATTTGATTCGTTTGTAT+CGG + chr7_3:64341588-64341607 None:intergenic 25.0%
! GAAGAACAAAAAAAAGTTGA+CGG + chr7_3:64341760-64341779 None:intergenic 25.0%
! GAAGAACAAAAAAAAGTTGA+CGG + chr7_3:64341760-64341779 None:intergenic 25.0%
! CCATGTTAATAGCATAAAAT+GGG + chr7_3:64342233-64342252 None:intergenic 25.0%
! TCCATGTTAATAGCATAAAA+TGG + chr7_3:64342234-64342253 None:intergenic 25.0%
!! GGTTTCTTTTTATTCACTTA+AGG - chr7_3:64342263-64342282 Msa1116620:intron 25.0%
!! TTTTTATTCACTTAAGGAGT+AGG - chr7_3:64342269-64342288 Msa1116620:intron 25.0%
!! TAGAGATTTGAAATTGAACA+TGG - chr7_3:64342294-64342313 Msa1116620:intron 25.0%
!! AGAGATTTGAAATTGAACAT+GGG - chr7_3:64342295-64342314 Msa1116620:intron 25.0%
! TATGCATGCCTATTTATAAT+AGG + chr7_3:64343056-64343075 None:intergenic 25.0%
!!! TTTTTGGTTGTTATTGTTTG+AGG + chr7_3:64343108-64343127 None:intergenic 25.0%
TTACACTTCTATATCACAAG+AGG - chr7_3:64337945-64337964 Msa1116620:CDS 30.0%
! TATTCCGTTGATTATACCAA+AGG - chr7_3:64338141-64338160 Msa1116620:intron 30.0%
ATCTCCTTTGGTATAATCAA+CGG + chr7_3:64338148-64338167 None:intergenic 30.0%
GAATACATCATATTCCACAA+TGG + chr7_3:64338172-64338191 None:intergenic 30.0%
TTCGTATTCCATTATTAGCT+AGG - chr7_3:64338189-64338208 Msa1116620:intron 30.0%
AAACTACACCTAGCTAATAA+TGG + chr7_3:64338200-64338219 None:intergenic 30.0%
ACCTAAAGTGAAAGTCAAAT+AGG - chr7_3:64338273-64338292 Msa1116620:intron 30.0%
! ACCTATTTGACTTTCACTTT+AGG + chr7_3:64338277-64338296 None:intergenic 30.0%
ATTGTCCAGTTAACAATTCA+AGG - chr7_3:64338409-64338428 Msa1116620:intron 30.0%
TTGTCCAGTTAACAATTCAA+GGG - chr7_3:64338410-64338429 Msa1116620:intron 30.0%
TTTACCCTTGAATTGTTAAC+TGG + chr7_3:64338417-64338436 None:intergenic 30.0%
!!! TTAGTGGGTTTAGGATTTTA+GGG + chr7_3:64338460-64338479 None:intergenic 30.0%
!!! ATTGATGGTGAATGTTTTGA+AGG + chr7_3:64338560-64338579 None:intergenic 30.0%
AATTGATCATGCTGAATCTA+TGG + chr7_3:64338585-64338604 None:intergenic 30.0%
!! TACTAAAAAAAGAGCGTCTA+TGG + chr7_3:64338972-64338991 None:intergenic 30.0%
! TGTTTACCTTTGGATCATTT+TGG - chr7_3:64339054-64339073 Msa1116620:intron 30.0%
! GTTTACCTTTGGATCATTTT+GGG - chr7_3:64339055-64339074 Msa1116620:intron 30.0%
! AGACACATCTAATAGTTTGT+TGG - chr7_3:64339089-64339108 Msa1116620:intron 30.0%
! TATGTTTTATGGTCTAGTGT+TGG + chr7_3:64339429-64339448 None:intergenic 30.0%
AAACCCTAATTTCAGAACAA+AGG - chr7_3:64339452-64339471 Msa1116620:intron 30.0%
AACCCTAATTTCAGAACAAA+GGG - chr7_3:64339453-64339472 Msa1116620:intron 30.0%
ATTTATACCGTTCATGCTAA+GGG + chr7_3:64339529-64339548 None:intergenic 30.0%
!! TAATCAAAAAGGTATTGGCT+CGG - chr7_3:64339721-64339740 Msa1116620:intron 30.0%
CGGGACATAAAAAAAATCTT+AGG - chr7_3:64339741-64339760 Msa1116620:intron 30.0%
! ACGGGTTAAAGATTATTCAT+TGG + chr7_3:64339836-64339855 None:intergenic 30.0%
! TAAGATTCAAGTGTCATTGA+AGG + chr7_3:64339940-64339959 None:intergenic 30.0%
ACCATATTATATTGTTGCAG+GGG - chr7_3:64340091-64340110 Msa1116620:intron 30.0%
!!! TTTTGAGATAAACACGGTTT+AGG - chr7_3:64340241-64340260 Msa1116620:intron 30.0%
! TTTGAGATAAACACGGTTTA+GGG - chr7_3:64340242-64340261 Msa1116620:intron 30.0%
AGATGTGTAACACTATAACT+TGG - chr7_3:64340472-64340491 Msa1116620:intron 30.0%
ACACTATAACTTGGAGAATA+AGG - chr7_3:64340481-64340500 Msa1116620:intron 30.0%
CAATCGAATAGGAATGAAAT+TGG - chr7_3:64340606-64340625 Msa1116620:intron 30.0%
CAGCATTTGAATTTGAATGA+CGG - chr7_3:64341024-64341043 Msa1116620:intron 30.0%
! TTTGGCTCATAAAAAATGTG+TGG - chr7_3:64341158-64341177 Msa1116620:intron 30.0%
ACCCCTCAAAAAAAAAAAGA+AGG + chr7_3:64341205-64341224 None:intergenic 30.0%
ATATCAAACATTTGACCACT+TGG - chr7_3:64341603-64341622 Msa1116620:intron 30.0%
CAATTATTATCACCCTCATT+CGG + chr7_3:64341830-64341849 None:intergenic 30.0%
! GCAGATCCATTCAATTATTT+TGG - chr7_3:64342184-64342203 Msa1116620:intron 30.0%
TCGAAGCCAAAATAATTGAA+TGG + chr7_3:64342193-64342212 None:intergenic 30.0%
! CCCATTTTATGCTATTAACA+TGG - chr7_3:64342230-64342249 Msa1116620:intron 30.0%
CTATTAACATGGATAATGTG+CGG - chr7_3:64342241-64342260 Msa1116620:intron 30.0%
TATTAACATGGATAATGTGC+GGG - chr7_3:64342242-64342261 Msa1116620:intron 30.0%
! ATATGATGAGGCATATTTTC+AGG + chr7_3:64342393-64342412 None:intergenic 30.0%
!!! AAGTTGAGCTGACATTTTTT+TGG + chr7_3:64342428-64342447 None:intergenic 30.0%
TATAACGTCAGTGACTAAAA+TGG - chr7_3:64342453-64342472 Msa1116620:intron 30.0%
AAACAACAAGCTTCATTGTT+TGG - chr7_3:64342672-64342691 Msa1116620:intron 30.0%
!!! TCATTTTGGTTTTGACATCT+TGG + chr7_3:64342805-64342824 None:intergenic 30.0%
! TTAACGGGAAACTATCATTT+TGG + chr7_3:64342819-64342838 None:intergenic 30.0%
!! TAACACTATTGGTTCTTAAC+GGG + chr7_3:64342834-64342853 None:intergenic 30.0%
!! CTAACACTATTGGTTCTTAA+CGG + chr7_3:64342835-64342854 None:intergenic 30.0%
! TCATTTTGGATTTGACATCT+TGG + chr7_3:64342862-64342881 None:intergenic 30.0%
! TTAACGGGAAACTATCATTT+TGG + chr7_3:64342819-64342838 None:intergenic 30.0%
TGCCTATTTATAATAGGTGA+GGG + chr7_3:64343050-64343069 None:intergenic 30.0%
ATGCCTATTTATAATAGGTG+AGG + chr7_3:64343051-64343070 None:intergenic 30.0%
AGAAATTAGAAGAGTTATGG+AGG + chr7_3:64343177-64343196 None:intergenic 30.0%
ATATTATGGAGAGGAATGTA+AGG + chr7_3:64343205-64343224 None:intergenic 30.0%
TTACACTTCTATATCACAAG+AGG - chr7_3:64337945-64337964 Msa1116620:CDS 30.0%
! TATTCCGTTGATTACACTAA+AGG - chr7_3:64343674-64343693 Msa1116620:CDS 30.0%
ATCTCCTTTAGTGTAATCAA+CGG + chr7_3:64343681-64343700 None:intergenic 30.0%
TGTCGTGAAAGTAAAAGTGA+AGG + chr7_3:64337771-64337790 None:intergenic 35.0%
! ACAAATACCATGCTAGGTTT+TGG + chr7_3:64337805-64337824 None:intergenic 35.0%
!!! GCATTTTTTACCTTGCCATT+TGG + chr7_3:64337835-64337854 None:intergenic 35.0%
GTAAAAAATGCGTTGCCATT+CGG - chr7_3:64337844-64337863 Msa1116620:CDS 35.0%
TAAAAAATGCGTTGCCATTC+GGG - chr7_3:64337845-64337864 Msa1116620:CDS 35.0%
!!! ACAAGTTTTGATTCACGTTC+GGG + chr7_3:64337907-64337926 None:intergenic 35.0%
!!! CACAAGTTTTGATTCACGTT+CGG + chr7_3:64337908-64337927 None:intergenic 35.0%
GAACGTGAATCAAAACTTGT+GGG - chr7_3:64337907-64337926 Msa1116620:CDS 35.0%
TGAATCAAAACTTGTGGGTA+AGG - chr7_3:64337912-64337931 Msa1116620:CDS 35.0%
TTCTATATCACAAGAGGAGA+TGG - chr7_3:64337951-64337970 Msa1116620:CDS 35.0%
TCTATATCACAAGAGGAGAT+GGG - chr7_3:64337952-64337971 Msa1116620:CDS 35.0%
TTCACTGATGGAGATTTCAA+TGG - chr7_3:64338000-64338019 Msa1116620:CDS 35.0%
! GGAAGTACACTTAGCATATT+AGG - chr7_3:64338021-64338040 Msa1116620:CDS 35.0%
ATAATGGCCATTTCTCTAAC+AGG + chr7_3:64338069-64338088 None:intergenic 35.0%
GTTAGAGAAATGGCCATTAT+TGG - chr7_3:64338069-64338088 Msa1116620:intron 35.0%
!!! TTAGGATTTTAGGGTGATAG+AGG + chr7_3:64338451-64338470 None:intergenic 35.0%
!!! GTTAGTGGGTTTAGGATTTT+AGG + chr7_3:64338461-64338480 None:intergenic 35.0%
GACTAATGTCATGAGTTAGT+GGG + chr7_3:64338475-64338494 None:intergenic 35.0%
GCTGAATCTATGGAAATTGA+TGG + chr7_3:64338575-64338594 None:intergenic 35.0%
ACCCTAATTTCAGAACAAAG+GGG - chr7_3:64339454-64339473 Msa1116620:intron 35.0%
!! ACCCCTTTGTTCTGAAATTA+GGG + chr7_3:64339458-64339477 None:intergenic 35.0%
CATTTATACCGTTCATGCTA+AGG + chr7_3:64339530-64339549 None:intergenic 35.0%
!! TAAAAAAATGGTGCCATAGG+CGG + chr7_3:64339554-64339573 None:intergenic 35.0%
!! CTCTAAAAAAATGGTGCCAT+AGG + chr7_3:64339557-64339576 None:intergenic 35.0%
!!! CTATGGCACCATTTTTTTAG+AGG - chr7_3:64339555-64339574 Msa1116620:intron 35.0%
!! AATCAAAAAGGTATTGGCTC+GGG - chr7_3:64339722-64339741 Msa1116620:intron 35.0%
ATCTTTAACCCGTAAGATCA+TGG - chr7_3:64339843-64339862 Msa1116620:intron 35.0%
TCTTTAACCCGTAAGATCAT+GGG - chr7_3:64339844-64339863 Msa1116620:intron 35.0%
ACCCCTGCAACAATATAATA+TGG + chr7_3:64340095-64340114 None:intergenic 35.0%
! CCCTAATTTTCATGCAAACT+CGG + chr7_3:64340308-64340327 None:intergenic 35.0%
CCGAGTTTGCATGAAAATTA+GGG - chr7_3:64340305-64340324 Msa1116620:intron 35.0%
GGAAAAAAAGGCAATCGAAT+AGG - chr7_3:64340595-64340614 Msa1116620:intron 35.0%
TCGAATAGGAATGAAATTGG+TGG - chr7_3:64340609-64340628 Msa1116620:intron 35.0%
CGAATAGGAATGAAATTGGT+GGG - chr7_3:64340610-64340629 Msa1116620:intron 35.0%
!!! GTGGGATGCATTTTTTTAGA+TGG - chr7_3:64340628-64340647 Msa1116620:intron 35.0%
!! CACTGACTCTTCTATTCTAA+TGG - chr7_3:64340771-64340790 Msa1116620:intron 35.0%
TGCTATTATTGCTACGATTG+TGG + chr7_3:64340867-64340886 None:intergenic 35.0%
! GGAAATTTTATAAACGGGAG+AGG + chr7_3:64341005-64341024 None:intergenic 35.0%
CGTCATTCAAATTCAAATGC+TGG + chr7_3:64341026-64341045 None:intergenic 35.0%
!! GTTGGCTCATATTTTCTTCA+TGG + chr7_3:64341090-64341109 None:intergenic 35.0%
TCATTTGCACCTCTAGATAT+GGG + chr7_3:64341112-64341131 None:intergenic 35.0%
ATCATTTGCACCTCTAGATA+TGG + chr7_3:64341113-64341132 None:intergenic 35.0%
GAAACTTCGTTCTTAGGATA+TGG + chr7_3:64341538-64341557 None:intergenic 35.0%
AAGGTAGAAACTTCGTTCTT+AGG + chr7_3:64341544-64341563 None:intergenic 35.0%
ACTTGAACGAATTAACCAAG+TGG + chr7_3:64341621-64341640 None:intergenic 35.0%
AAGAAGAAGAAAGATGGTGA+CGG + chr7_3:64341802-64341821 None:intergenic 35.0%
GTAGACAAGAAGAAGAAAGA+TGG + chr7_3:64341808-64341827 None:intergenic 35.0%
GTAGACAAGAAGAAGAAAGA+TGG + chr7_3:64341808-64341827 None:intergenic 35.0%
TTAGATTTCCCATCTTAGTG+CGG - chr7_3:64342120-64342139 Msa1116620:intron 35.0%
AATAAAGACCGCACTAAGAT+GGG + chr7_3:64342131-64342150 None:intergenic 35.0%
AAATAAAGACCGCACTAAGA+TGG + chr7_3:64342132-64342151 None:intergenic 35.0%
CTGACAAGAATGATATGATG+AGG + chr7_3:64342405-64342424 None:intergenic 35.0%
TCAGTGACTAAAATGGCTAA+CGG - chr7_3:64342460-64342479 Msa1116620:intron 35.0%
CGTTAAGAACCAATAGTGTT+AGG - chr7_3:64342833-64342852 Msa1116620:intron 35.0%
AACAACGCTTAACATGTTTC+TGG - chr7_3:64342917-64342936 Msa1116620:intron 35.0%
ATTTATAATAGGTGAGGGTG+TGG + chr7_3:64343045-64343064 None:intergenic 35.0%
CACCCTCACCTATTATAAAT+AGG - chr7_3:64343045-64343064 Msa1116620:intron 35.0%
GTAATTAGTAGCAGTGACAA+GGG + chr7_3:64343228-64343247 None:intergenic 35.0%
AGTAATTAGTAGCAGTGACA+AGG + chr7_3:64343229-64343248 None:intergenic 35.0%
TGTCGTGAAAGTAAAAGTGA+AGG + chr7_3:64337771-64337790 None:intergenic 35.0%
! ACAAATACCATGCTAGGTTT+TGG + chr7_3:64337805-64337824 None:intergenic 35.0%
!!! GCATTTTTTACCTTGCCATT+AGG + chr7_3:64337835-64337854 None:intergenic 35.0%
GTAAAAAATGCGTTGCCATT+CGG - chr7_3:64337844-64337863 Msa1116620:CDS 35.0%
TAAAAAATGCGTTGCCATTC+GGG - chr7_3:64337845-64337864 Msa1116620:CDS 35.0%
TTCTATATCACAAGAGGAGA+TGG - chr7_3:64337951-64337970 Msa1116620:CDS 35.0%
TCTATATCACAAGAGGAGAT+GGG - chr7_3:64337952-64337971 Msa1116620:CDS 35.0%
TTCACTGATGGAGATTTCAA+TGG - chr7_3:64338000-64338019 Msa1116620:CDS 35.0%
! TGGAAGTACACTTAGCATAT+TGG - chr7_3:64338020-64338039 Msa1116620:CDS 35.0%
! GGAAGTACACTTAGCATATT+GGG - chr7_3:64338021-64338040 Msa1116620:CDS 35.0%
ATATTACGGCGAGGAAAGTA+AGG + chr7_3:64337672-64337691 None:intergenic 40.0%
GTAATTAGTGGCAGTGACAA+GGG + chr7_3:64337695-64337714 None:intergenic 40.0%
AGTAATTAGTGGCAGTGACA+AGG + chr7_3:64337696-64337715 None:intergenic 40.0%
TTGAAAACCCAGCATTGTTG+GGG + chr7_3:64337731-64337750 None:intergenic 40.0%
CTTGAAAACCCAGCATTGTT+GGG + chr7_3:64337732-64337751 None:intergenic 40.0%
TCTTGAAAACCCAGCATTGT+TGG + chr7_3:64337733-64337752 None:intergenic 40.0%
TACTTTCACGACATTGTGTC+AGG - chr7_3:64337778-64337797 Msa1116620:CDS 40.0%
TCAGCTACAAATACCATGCT+AGG + chr7_3:64337811-64337830 None:intergenic 40.0%
GTATTTGTAGCTGAGCCAAA+TGG - chr7_3:64337817-64337836 Msa1116620:CDS 40.0%
CGAACGTGAATCAAAACTTG+TGG - chr7_3:64337906-64337925 Msa1116620:CDS 40.0%
! ACTAATGATGGTGATGACCA+TGG - chr7_3:64337975-64337994 Msa1116620:CDS 40.0%
GAGTGAACCTGTTAGAGAAA+TGG - chr7_3:64338059-64338078 Msa1116620:CDS 40.0%
AGAGAAATGGCCATTATTGG+TGG - chr7_3:64338072-64338091 Msa1116620:intron 40.0%
GAGAAATGGCCATTATTGGT+GGG - chr7_3:64338073-64338092 Msa1116620:intron 40.0%
! ACTTTAGGTGAGAGTGTAAC+AGG + chr7_3:64338262-64338281 None:intergenic 40.0%
!! ATGCTTACATGTGTCACTTG+AGG - chr7_3:64338383-64338402 Msa1116620:intron 40.0%
!! TGTCATGAGTTAGTGGGTTT+AGG + chr7_3:64338469-64338488 None:intergenic 40.0%
GGACTAATGTCATGAGTTAG+TGG + chr7_3:64338476-64338495 None:intergenic 40.0%
CTAACTCATGACATTAGTCC+AGG - chr7_3:64338476-64338495 Msa1116620:intron 40.0%
TTATAGTCCAAACCCTTCTC+TGG - chr7_3:64338504-64338523 Msa1116620:intron 40.0%
CAGTATTCTTCTCCAGAGAA+GGG + chr7_3:64338519-64338538 None:intergenic 40.0%
! TACCTTTGGATCATTTTGGG+TGG - chr7_3:64339058-64339077 Msa1116620:intron 40.0%
AACCACCCAAAATGATCCAA+AGG + chr7_3:64339063-64339082 None:intergenic 40.0%
!! CACCCCTTTGTTCTGAAATT+AGG + chr7_3:64339459-64339478 None:intergenic 40.0%
ACTATAAGGACTTACAAGGG+TGG - chr7_3:64339503-64339522 Msa1116620:intron 40.0%
! AAAAATCTTAGGACCGGCTT+TGG - chr7_3:64339752-64339771 Msa1116620:intron 40.0%
TTGATCGACCCATGATCTTA+CGG + chr7_3:64339855-64339874 None:intergenic 40.0%
TATATACAGCCGAGTTTGCA+TGG - chr7_3:64340270-64340289 Msa1116620:intron 40.0%
CCCTAATTTCCATGCAAACT+CGG + chr7_3:64340282-64340301 None:intergenic 40.0%
CCGAGTTTGCATGGAAATTA+GGG - chr7_3:64340279-64340298 Msa1116620:intron 40.0%
GCCGAGTTTGCATGAAAATT+AGG - chr7_3:64340304-64340323 Msa1116620:intron 40.0%
!! GTGAGAGCGTCAAAAAAGAA+AGG - chr7_3:64340503-64340522 Msa1116620:intron 40.0%
CGTCAAAAAAGAAAGGCAAC+AGG - chr7_3:64340510-64340529 Msa1116620:intron 40.0%
ATTATTGCTACGATTGTGGC+TGG + chr7_3:64340863-64340882 None:intergenic 40.0%
TTCTTCTTGTCTACCGAATG+AGG - chr7_3:64341814-64341833 Msa1116620:intron 40.0%
TCTTCTTGTCTACCGAATGA+GGG - chr7_3:64341815-64341834 Msa1116620:intron 40.0%
! AAGAAAGATGGTGACGACTA+GGG + chr7_3:64341904-64341923 None:intergenic 40.0%
TTCTTCTTGTCTACCGAATG+AGG - chr7_3:64341814-64341833 Msa1116620:intron 40.0%
TCTTCTTGTCTACCGAATGA+GGG - chr7_3:64341815-64341834 Msa1116620:intron 40.0%
GAACTTGAATCACCCTCATT+CGG + chr7_3:64341938-64341957 None:intergenic 40.0%
GATTTCAGAGGAGTGAGTTA+GGG + chr7_3:64341969-64341988 None:intergenic 40.0%
AGATTTCAGAGGAGTGAGTT+AGG + chr7_3:64341970-64341989 None:intergenic 40.0%
GGGAAGGAAAAAGATTTCAG+AGG + chr7_3:64341981-64342000 None:intergenic 40.0%
! GTGCGGTCTTTATTTGATTC+AGG - chr7_3:64342137-64342156 Msa1116620:intron 40.0%
TGAACATGGGAGTGATGAAT+TGG - chr7_3:64342308-64342327 Msa1116620:intron 40.0%
GAACATGGGAGTGATGAATT+GGG - chr7_3:64342309-64342328 Msa1116620:intron 40.0%
CGATGTGTTGTAAGCACATT+AGG - chr7_3:64342544-64342563 Msa1116620:intron 40.0%
CGTCAAGAACCAATAGTGTT+AGG - chr7_3:64342776-64342795 Msa1116620:intron 40.0%
TCTTGGCTTCCTAACACTAT+TGG + chr7_3:64342788-64342807 None:intergenic 40.0%
TCTTGGCTTCCTAACACTAT+TGG + chr7_3:64342788-64342807 None:intergenic 40.0%
TAGTTCATTCGCATCAACCA+TGG - chr7_3:64343136-64343155 Msa1116620:intron 40.0%
! GGATTGTGAAGATTTTGCCA+TGG + chr7_3:64343156-64343175 None:intergenic 40.0%
TGACAAGGGATATTATGGAG+AGG + chr7_3:64343214-64343233 None:intergenic 40.0%
AGCAGTGACAAGGGATATTA+TGG + chr7_3:64343219-64343238 None:intergenic 40.0%
TTGAAAACCCAGCATTGTTG+GGG + chr7_3:64337731-64337750 None:intergenic 40.0%
CTTGAAAACCCAGCATTGTT+GGG + chr7_3:64337732-64337751 None:intergenic 40.0%
TCTTGAAAACCCAGCATTGT+TGG + chr7_3:64337733-64337752 None:intergenic 40.0%
TACTTTCACGACATTGTGTC+AGG - chr7_3:64337778-64337797 Msa1116620:CDS 40.0%
TCAGCTACAAATACCATGCT+AGG + chr7_3:64337811-64337830 None:intergenic 40.0%
GTATTTGTAGCTGAGCCTAA+TGG - chr7_3:64343350-64343369 Msa1116620:CDS 40.0%
! ACTAATGATGGTGATGACCA+TGG - chr7_3:64337975-64337994 Msa1116620:CDS 40.0%
GAGTGAACCTGTTAGAGAAA+TGG - chr7_3:64338059-64338078 Msa1116620:CDS 40.0%
ACAATGGCCATTTCTCTAAC+AGG + chr7_3:64343602-64343621 None:intergenic 40.0%
GTTAGAGAAATGGCCATTGT+TGG - chr7_3:64343602-64343621 Msa1116620:CDS 40.0%
CTAAAGGAGATGCCATATTG+TGG - chr7_3:64343690-64343709 Msa1116620:CDS 40.0%
GAGAATTGTGGAGCATGATG+AGG + chr7_3:64337638-64337657 None:intergenic 45.0%
GGCAGTGACAAGGGATATTA+CGG + chr7_3:64337686-64337705 None:intergenic 45.0%
AAACTTGTGGGTAAGGCTCA+AGG - chr7_3:64337919-64337938 Msa1116620:CDS 45.0%
AGAGGAGATGGGACTAATGA+TGG - chr7_3:64337963-64337982 Msa1116620:CDS 45.0%
ATGACCATGGCATTCACTGA+TGG - chr7_3:64337988-64338007 Msa1116620:CDS 45.0%
ATCTCCATCAGTGAATGCCA+TGG + chr7_3:64337995-64338014 None:intergenic 45.0%
AGCTTCAGTCCCACCAATAA+TGG + chr7_3:64338085-64338104 None:intergenic 45.0%
! GAAGCTTTTCGTTTCGTACG+TGG - chr7_3:64338099-64338118 Msa1116620:intron 45.0%
TACCAAAGGAGATGCCATTG+TGG - chr7_3:64338155-64338174 Msa1116620:intron 45.0%
TTCCACAATGGCATCTCCTT+TGG + chr7_3:64338160-64338179 None:intergenic 45.0%
AGGGTGATAGAGGAGGTTTA+GGG + chr7_3:64338441-64338460 None:intergenic 45.0%
TAGGGTGATAGAGGAGGTTT+AGG + chr7_3:64338442-64338461 None:intergenic 45.0%
!!! GGATTTTAGGGTGATAGAGG+AGG + chr7_3:64338448-64338467 None:intergenic 45.0%
GTTTGGACTATAAGCGTACC+TGG + chr7_3:64338497-64338516 None:intergenic 45.0%
TTCTTCTCCAGAGAAGGGTT+TGG + chr7_3:64338514-64338533 None:intergenic 45.0%
GCAGTATTCTTCTCCAGAGA+AGG + chr7_3:64338520-64338539 None:intergenic 45.0%
! AGAGCGTCTATGGTTGAACT+AGG + chr7_3:64338962-64338981 None:intergenic 45.0%
ACGGTATAAATGTCCGCCTA+TGG - chr7_3:64339538-64339557 Msa1116620:intron 45.0%
TGATCGACCCATGATCTTAC+GGG + chr7_3:64339854-64339873 None:intergenic 45.0%
GCCGAGTTTGCATGGAAATT+AGG - chr7_3:64340278-64340297 Msa1116620:intron 45.0%
! CTTCTTTGAGTTCTGTCACG+TGG - chr7_3:64340829-64340848 Msa1116620:intron 45.0%
TACGATTGTGGCTGGTACAT+TGG + chr7_3:64340855-64340874 None:intergenic 45.0%
TAATAGCAGCCTCCAACGAA+CGG - chr7_3:64340879-64340898 Msa1116620:intron 45.0%
ATGAGCCAACCCATATCTAG+AGG - chr7_3:64341100-64341119 Msa1116620:intron 45.0%
TTGCACCTCTAGATATGGGT+TGG + chr7_3:64341108-64341127 None:intergenic 45.0%
!! AAGAAAGATGGTGACGGCTA+GGG + chr7_3:64341796-64341815 None:intergenic 45.0%
! GAAGAAAGATGGTGACGACT+AGG + chr7_3:64341905-64341924 None:intergenic 45.0%
AAACCTATCCCCAACAATGC+TGG - chr7_3:64343253-64343272 Msa1116620:CDS 45.0%
AACCTATCCCCAACAATGCT+GGG - chr7_3:64343254-64343273 Msa1116620:CDS 45.0%
! ACAAGTTTCGAGTCACGTTC+AGG + chr7_3:64343440-64343459 None:intergenic 45.0%
TGAACGTGACTCGAAACTTG+TGG - chr7_3:64343439-64343458 Msa1116620:CDS 45.0%
GAACGTGACTCGAAACTTGT+GGG - chr7_3:64343440-64343459 Msa1116620:CDS 45.0%
TGACTCGAAACTTGTGGGTA+AGG - chr7_3:64343445-64343464 Msa1116620:CDS 45.0%
AAACTTGTGGGTAAGGCTCA+AGG - chr7_3:64337919-64337938 Msa1116620:CDS 45.0%
AGAGGAGATGGGACTAATGA+TGG - chr7_3:64337963-64337982 Msa1116620:CDS 45.0%
ATGACCATGGCATTCACTGA+TGG - chr7_3:64337988-64338007 Msa1116620:CDS 45.0%
ATCTCCATCAGTGAATGCCA+TGG + chr7_3:64337995-64338014 None:intergenic 45.0%
AGAGAAATGGCCATTGTTGG+CGG - chr7_3:64343605-64343624 Msa1116620:CDS 45.0%
! GGGCTTTTCGTTTTGTACGT+GGG - chr7_3:64343633-64343652 Msa1116620:CDS 45.0%
!!! ATTTTATTAGAATATATTAT+TGG - chr7_3:64340013-64340032 Msa1116620:intron 5.0%
!!! TTTTATTAGAATATATTATT+GGG - chr7_3:64340014-64340033 Msa1116620:intron 5.0%
!!! ATATATATCAATTTTTTTAT+AGG - chr7_3:64341509-64341528 Msa1116620:intron 5.0%
!!! TTAATTATTATTGTTTTTAA+CGG + chr7_3:64342892-64342911 None:intergenic 5.0%
TGACAAGGGATATTACGGCG+AGG + chr7_3:64337681-64337700 None:intergenic 50.0%
AAGCCTATCCCCAACAATGC+TGG - chr7_3:64337720-64337739 Msa1116620:CDS 50.0%
AGCCTATCCCCAACAATGCT+GGG - chr7_3:64337721-64337740 Msa1116620:CDS 50.0%
AACCCAGCATTGTTGGGGAT+AGG + chr7_3:64337726-64337745 None:intergenic 50.0%
GTCAGGACCAAAACCTAGCA+TGG - chr7_3:64337795-64337814 Msa1116620:CDS 50.0%
TGTAGCTGAGCCAAATGGCA+AGG - chr7_3:64337822-64337841 Msa1116620:CDS 50.0%
CTAACTGCTAAGCCGTTCGT+TGG + chr7_3:64340894-64340913 None:intergenic 50.0%
TCCTACACACCTCATCACAC+TGG - chr7_3:64340938-64340957 Msa1116620:intron 50.0%
TCCAGTGTGATGAGGTGTGT+AGG + chr7_3:64340942-64340961 None:intergenic 50.0%
! AGCTAGCTTCCAGTGTGATG+AGG + chr7_3:64340950-64340969 None:intergenic 50.0%
!! GAAGAAAGATGGTGACGGCT+AGG + chr7_3:64341797-64341816 None:intergenic 50.0%
TTGGCTTCGAGCAAGTGCAT+TGG - chr7_3:64342203-64342222 Msa1116620:intron 50.0%
AACCCAGCATTGTTGGGGAT+AGG + chr7_3:64337726-64337745 None:intergenic 50.0%
GTCAGGACCAAAACCTAGCA+TGG - chr7_3:64337795-64337814 Msa1116620:CDS 50.0%
TGTAGCTGAGCCTAATGGCA+AGG - chr7_3:64343355-64343374 Msa1116620:CDS 50.0%
AAATGCGTTGCCATTCGGGA+CGG - chr7_3:64337849-64337868 Msa1116620:CDS 50.0%
GAGAAATGGCCATTGTTGGC+GGG - chr7_3:64343606-64343625 Msa1116620:CDS 50.0%
! GGGGCTTTTCGTTTTGTACG+TGG - chr7_3:64343632-64343651 Msa1116620:CDS 50.0%
GTTGCCATTCGGGACAGTTG+TGG - chr7_3:64337855-64337874 Msa1116620:CDS 55.0%
ATCGCCACAACTGTCCCGAA+TGG + chr7_3:64337862-64337881 None:intergenic 55.0%
ATTCGGGACAGTTGTGGCGA+TGG - chr7_3:64337861-64337880 Msa1116620:CDS 55.0%
GGCGATGGATGACCCTTTGA+CGG - chr7_3:64337876-64337895 Msa1116620:CDS 55.0%
ATGGATGACCCTTTGACGGC+TGG - chr7_3:64337880-64337899 Msa1116620:CDS 55.0%
TGGATGACCCTTTGACGGCT+GGG - chr7_3:64337881-64337900 Msa1116620:CDS 55.0%
AGGGTGGCCCTTAGCATGAA+CGG - chr7_3:64339519-64339538 Msa1116620:intron 55.0%
ACTGCTAAGCCGTTCGTTGG+AGG + chr7_3:64340891-64340910 None:intergenic 55.0%
GGCGATGGATGACCCATTGA+CGG - chr7_3:64343409-64343428 Msa1116620:CDS 55.0%
ATGGATGACCCATTGACGGC+TGG - chr7_3:64343413-64343432 Msa1116620:CDS 55.0%
GTTCAGGACCAGCCGTCAAT+GGG + chr7_3:64343424-64343443 None:intergenic 55.0%
GTTGCCATTCGGGACGGTTG+TGG - chr7_3:64343388-64343407 Msa1116620:CDS 60.0%
ATCGCCACAACCGTCCCGAA+TGG + chr7_3:64343395-64343414 None:intergenic 60.0%
ATTCGGGACGGTTGTGGCGA+TGG - chr7_3:64343394-64343413 Msa1116620:CDS 60.0%
CGTTCAGGACCAGCCGTCAA+TGG + chr7_3:64343425-64343444 None:intergenic 60.0%
ATGGCCATTGTTGGCGGGAC+TGG - chr7_3:64343611-64343630 Msa1116620:CDS 60.0%
TGGCCATTGTTGGCGGGACT+GGG - chr7_3:64343612-64343631 Msa1116620:CDS 60.0%
GTTCGGGCCCAGCCGTCAAA+GGG + chr7_3:64337891-64337910 None:intergenic 65.0%
GGCCATTGTTGGCGGGACTG+GGG - chr7_3:64343613-64343632 Msa1116620:CDS 65.0%
AGCCCCAGTCCCGCCAACAA+TGG + chr7_3:64343618-64343637 None:intergenic 65.0%
CGTTCGGGCCCAGCCGTCAA+AGG + chr7_3:64337892-64337911 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 64337625 64343745 64337625 ID=Msa1116620;Name=Msa1116620
chr7_3 mRNA 64337625 64343745 64337625 ID=Msa1116620-mRNA-1;Parent=Msa1116620;Name=Msa1116620-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|0|0|4|0|323
chr7_3 exon 64343554 64343745 64343554 ID=Msa1116620-mRNA-1:exon:15244;Parent=Msa1116620-mRNA-1
chr7_3 exon 64343346 64343526 64343346 ID=Msa1116620-mRNA-1:exon:15243;Parent=Msa1116620-mRNA-1
chr7_3 exon 64343185 64343327 64343185 ID=Msa1116620-mRNA-1:exon:15242;Parent=Msa1116620-mRNA-1
chr7_3 exon 64337625 64338080 64337625 ID=Msa1116620-mRNA-1:exon:15241;Parent=Msa1116620-mRNA-1
chr7_3 CDS 64343554 64343745 64343554 ID=Msa1116620-mRNA-1:cds;Parent=Msa1116620-mRNA-1
chr7_3 CDS 64343346 64343526 64343346 ID=Msa1116620-mRNA-1:cds;Parent=Msa1116620-mRNA-1
chr7_3 CDS 64343185 64343327 64343185 ID=Msa1116620-mRNA-1:cds;Parent=Msa1116620-mRNA-1
chr7_3 CDS 64337625 64338080 64337625 ID=Msa1116620-mRNA-1:cds;Parent=Msa1116620-mRNA-1
Gene Sequence

>Msa1116620

ATGGCAAAATCCTCATCATGCTCCACAATTCTCATTTCTTTTAACCTTACTTTCCTCGCCGTAATATCCCTTGTCACTGCCACTAATTACTATAAAAGCCTATCCCCAACAATGCTGGGTTTTCAAGAAGAGAAATTCACTCACCTTCACTTTTACTTTCACGACATTGTGTCAGGACCAAAACCTAGCATGGTAAAAAATGCGTTGCCATTCGGGACAGTTGTGGCGATGGATGACCCTTTGACGGCTGGGCCCGAACGTGAATCAAAACTTGTGGGTAAGGCTCAAGGAATTTACACTTCTATATCACAAGAGGAGATGGGACTAATGATGGTGATGACCATGGCATTCACTGATGGAGATTTCAATGGAAGCAGAAACATGATCATGAGTGAACCTGTTAGAGAAATGGCCATTATTGGTGGGACTGAAGCTTTTCGTTTCGTACGTGGTTATGCTCAAGCTAAATTTTATTCCGTTGATTATACCAAAGGAGATGCCATTGTGGAATATGATAAATTCACTCACCTTCACTTTTACTTTCACGACATTGTGTCAGGACCAAAACCTAGCATGGTATTTGTAGCTGAGCCTAATGGCAAGGTAAAAAATGCGTTGCCATTCGGGACGGTTGTGGCGATGGATGACCCATTGACGGCTGGTCCTGAACGTGACTCGAAACTTGTGGGTAAGGCTCAAGGAATTTACACTTCTATATCACAAGAGGAGATGGGACTAATGATGGTGATGACCATGGCATTCACTGATGGAGATTTCAATGGAAGTACACTTAGCATATTGGGCAGAAACATGATCATGAGTGAACCTGTTAGAGAAATGGCCATTGTTGGCGGGACTGGGGCTTTTCGTTTTGTACGTGGGTATGCTCAAGCTAAATTTTATTCCGTTGATTACACTAAAGGAGATGCCATATTGTGGAATATGATATATTCGTATTCCATTATTAGCTAG
Protein sequence

>Msa1116620

MAKSSSCSTILISFNLTFLAVISLVTATNYYKSLSPTMLGFQEEKFTHLHFYFHDIVSGPKPSMVKNALPFGTVVAMDDPLTAGPERESKLVGKAQGIYTSISQEEMGLMMVMTMAFTDGDFNGSRNMIMSEPVREMAIIGGTEAFRFVRGYAQAKFYSVDYTKGDAIVEYDKFTHLHFYFHDIVSGPKPSMVFVAEPNGKVKNALPFGTVVAMDDPLTAGPERDSKLVGKAQGIYTSISQEEMGLMMVMTMAFTDGDFNGSTLSILGRNMIMSEPVREMAIVGGTGAFRFVRGYAQAKFYSVDYTKGDAILWNMIYSYSIIS*