AlfalfaGEDB | Msa1162900

M. sativa cultivar zhongmu-4 / Msa1162900

KEGG: -
GO: -
PFAM: PF03018.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162900	XP_003625315.1	95.876	194	8	0	1	194	1	194	2.78e-134	384

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162900	sp\|A0A1V1FH01\|DIR_GLYEC	84.021	194	25	3	1	194	1	188	1.41e-116	332

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162900	G7KWC3	95.876	194	8	0	1	194	1	194	1.33e-134	384

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0151220	Msa1162900	0.804387	2.213230e-49	-8.615850e-47
Msa0225840	Msa1162900	0.806369	8.505110e-50	-8.615850e-47
Msa0260530	Msa1162900	0.817346	3.458056e-52	-8.615850e-47
Msa1075500	Msa1162900	0.876591	1.236496e-68	-8.615850e-47
Msa1116620	Msa1162900	0.929737	4.519548e-93	-8.615850e-47
Msa1162900	Msa1420930	0.808143	3.578781e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162900	MtrunA17_Chr7g0259091	95.876	194	8	0	1	194	1	194	2.55e-138	384
Msa1162900	MtrunA17_Chr7g0259101	94.845	194	10	0	1	194	1	194	6.49e-134	380
Msa1162900	MtrunA17_Chr7g0259101	93.299	194	12	1	1	194	201	393	7.51e-130	370
Msa1162900	MtrunA17_Chr7g0259071	77.157	197	36	2	1	194	1	191	1.18e-109	311
Msa1162900	MtrunA17_Chr7g0259121	59.091	176	65	4	24	194	20	193	1.07e-70	214
Msa1162900	MtrunA17_Chr1g0175911	51.309	191	87	4	5	194	7	192	2.32e-60	186
Msa1162900	MtrunA17_Chr4g0005081	50.000	166	81	2	30	194	33	197	1.19e-57	180
Msa1162900	MtrunA17_Chr4g0005071	47.541	183	94	2	13	194	15	196	1.11e-56	177
Msa1162900	MtrunA17_Chr4g0005031	51.316	152	73	1	43	194	71	221	2.88e-53	169
Msa1162900	MtrunA17_Chr4g0005041	48.214	168	81	4	30	194	34	198	3.16e-52	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1162900	AT5G42500.1	51.190	168	78	3	26	193	22	185	2.69e-55	174
Msa1162900	AT5G42510.1	50.000	162	77	3	32	193	25	182	1.82e-51	164
Msa1162900	AT1G65870.1	53.548	155	67	3	41	193	38	189	2.18e-51	164
Msa1162900	AT1G22900.1	48.295	176	87	3	18	193	22	193	1.00e-50	162
Msa1162900	AT1G58170.1	43.716	183	97	2	12	194	9	185	3.86e-49	158
Msa1162900	AT1G55210.1	40.000	190	108	4	7	194	2	187	1.07e-48	157
Msa1162900	AT1G55210.2	40.000	190	108	4	7	194	2	187	1.07e-48	157
Msa1162900	AT5G49040.1	39.791	191	111	3	7	194	2	191	1.51e-48	157
Msa1162900	AT3G13650.1	39.785	186	108	2	9	194	5	186	3.36e-48	155
Msa1162900	AT2G21100.1	43.503	177	99	1	17	193	12	187	7.66e-44	144

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Find 56 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATTAGAAGAGTTA+TGG	0.360744	7_4:-53827133	None:intergenic
AAACTTGTGGGTAAGGCTCA+AGG	0.545821	7_4:+53827408	Msa1162900:CDS
AAATGCGTTGCCATTCGGGA+CGG	0.561926	7_4:+53827338	Msa1162900:CDS
AACCCAGCATTGTTGGGGAT+AGG	0.607331	7_4:-53827212	None:intergenic
AAGCCTATCCCCAACAATGC+TGG	0.431336	7_4:+53827209	Msa1162900:CDS
ACAAATACCATGCTAGGTTT+TGG	0.370876	7_4:-53827291	None:intergenic
ACAAGTTTCGAGTCACGTTC+AGG	0.491447	7_4:-53827393	None:intergenic
ACAATGGCCATTTCTCTAAC+AGG	0.358166	7_4:-53827555	None:intergenic
ACTAATGATGGTGATGACCA+TGG	0.702330	7_4:+53827464	Msa1162900:CDS
AGAAATTAGAAGAGTTATGG+AGG	0.509697	7_4:-53827130	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAATTAGAAGAGTTATGG+AGG	-	chr7_4:53827133-53827152	None:intergenic	30.0%
TTACACTTCTATATCACAAG+AGG	+	chr7_4:53827434-53827453	Msa1162900:CDS	30.0%
ATCTCCTTTAGTGTAATCAA+CGG	-	chr7_4:53827637-53827656	None:intergenic	30.0%
TGTCGTGAAAGTAAAAGTGA+AGG	-	chr7_4:53827260-53827279	None:intergenic	35.0%
GTAAAAAATGCGTTGCCATT+CGG	+	chr7_4:53827333-53827352	Msa1162900:CDS	35.0%
TAAAAAATGCGTTGCCATTC+GGG	+	chr7_4:53827334-53827353	Msa1162900:CDS	35.0%
TTCTATATCACAAGAGGAGA+TGG	+	chr7_4:53827440-53827459	Msa1162900:CDS	35.0%
TCTATATCACAAGAGGAGAT+GGG	+	chr7_4:53827441-53827460	Msa1162900:CDS	35.0%
TTCACTGATGGAGATTTCAA+TGG	+	chr7_4:53827489-53827508	Msa1162900:CDS	35.0%
TGACAAGGGATATTATGGAG+AGG	-	chr7_4:53827170-53827189	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	53827111	53827695	53827111	ID=Msa1162900;Name=Msa1162900
chr7_4	mRNA	53827111	53827695	53827111	ID=Msa1162900-mRNA-1;Parent=Msa1162900;Name=Msa1162900-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|194
chr7_4	exon	53827111	53827695	53827111	ID=Msa1162900-mRNA-1:exon:15560;Parent=Msa1162900-mRNA-1
chr7_4	CDS	53827111	53827695	53827111	ID=Msa1162900-mRNA-1:cds;Parent=Msa1162900-mRNA-1

Gene Sequence

>Msa1162900

ATGGCAAAATCTTCACAATCCTCCATAACTCTTCTAATTTCTTTTAACGTTACATTCCTCTCCATAATATCCCTTGTCACTGCCACTAATTACTATAAAAGCCTATCCCCAACAATGCTGGGTTTTCAAGAAGAGAAATTCACTCACCTTCACTTTTACTTTCACGACATTGTGTCAGGACCAAAACCTAGCATGGTATTTGTAGCTGAGCCTAATGGCAAGGTAAAAAATGCGTTGCCATTCGGGACGGTTGTGGCGATGGATGACCCATTGACGGCTGGTCCTGAACGTGACTCGAAACTTGTGGGTAAGGCTCAAGGAATTTACACTTCTATATCACAAGAGGAGATGGGACTAATGATGGTGATGACCATGGCATTCACTGATGGAGATTTCAATGGAAGTACACTTAGCATATTGGGCAGAAACATGATCATGAGTGAACCTGTTAGAGAAATGGCCATTGTTGGCGGGACTGGGGCTTTTCGTTTTGTACGTGGGTATGCTCAAGCTAAATTTTATTCCGTTGATTACACTAAAGGAGATGCCATTGTGGAATATGATATATTCGTTTTCCATTATTAG

Protein sequence

>Msa1162900

MAKSSQSSITLLISFNVTFLSIISLVTATNYYKSLSPTMLGFQEEKFTHLHFYFHDIVSGPKPSMVFVAEPNGKVKNALPFGTVVAMDDPLTAGPERDSKLVGKAQGIYTSISQEEMGLMMVMTMAFTDGDFNGSTLSILGRNMIMSEPVREMAIVGGTGAFRFVRGYAQAKFYSVDYTKGDAIVEYDIFVFHY*