Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116980 | XP_013449697.1 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 2.94e-61 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116980 | sp|Q1H595|LSM2_ARATH | 91.398 | 93 | 8 | 0 | 1 | 93 | 1 | 93 | 4.68e-60 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116980 | A0A072UD03 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 1.40e-61 | 191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0585620 | Msa1116980 | 0.820384 | 7.058201e-53 | -8.615850e-47 |
| Msa0585650 | Msa1116980 | 0.839657 | 1.389655e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116980 | MtrunA17_Chr7g0259511 | 98.925 | 93 | 1 | 0 | 1 | 93 | 1 | 93 | 2.70e-65 | 191 |
| Msa1116980 | MtrunA17_Chr7g0266371 | 97.849 | 93 | 2 | 0 | 1 | 93 | 1 | 93 | 6.15e-65 | 190 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1116980 | AT1G03330.1 | 91.398 | 93 | 8 | 0 | 1 | 93 | 1 | 93 | 4.76e-61 | 181 |
Find 41 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGGATCGTTACCATTT+TGG | 0.144327 | 7_3:-65030840 | None:intergenic |
| AAGAAATGTCAAAACGTATA+TGG | 0.306358 | 7_3:+65033881 | Msa1116980:three_prime_UTR |
| TTTCTCGTACTTCAAAGATT+TGG | 0.349513 | 7_3:+65030941 | Msa1116980:CDS |
| CGAGCTTGATGTTAAGGTAT+TGG | 0.368384 | 7_3:-65031031 | None:intergenic |
| AGTTCAATGTCCACACCTTC+TGG | 0.375260 | 7_3:-65033615 | None:intergenic |
| GTTCTCAGCCATATCCAAAA+TGG | 0.376359 | 7_3:+65030826 | Msa1116980:exon |
| TGCCACAAGGAGAGAAGCCC+GGG | 0.436743 | 7_3:+65033647 | Msa1116980:CDS |
| TCATCGTATGAGAATTCTAT+AGG | 0.439692 | 7_3:+65033699 | Msa1116980:three_prime_UTR |
| TTTGCTTTCAGCTTTCTGTA+AGG | 0.472959 | 7_3:+65033547 | Msa1116980:intron |
| CTCGTACTTCAAAGATTTGG+TGG | 0.482905 | 7_3:+65030944 | Msa1116980:CDS |
| CGTATGAGAATTCTATAGGC+TGG | 0.489218 | 7_3:+65033703 | Msa1116980:three_prime_UTR |
| ATGTTGTGCATAATAATACT+TGG | 0.493739 | 7_3:-65033915 | None:intergenic |
| CGCGAGAGCGAGAGGAAACA+AGG | 0.506147 | 7_3:-65030774 | None:intergenic |
| GGATATGGCTGAGAACTAGC+AGG | 0.509593 | 7_3:-65030819 | None:intergenic |
| TTAATAGATGCATAAGGGGA+AGG | 0.521914 | 7_3:-65033858 | None:intergenic |
| GAGTGAGCCGCGAGAGCGAG+AGG | 0.523710 | 7_3:-65030782 | None:intergenic |
| TAATAGATGCATAAGGGGAA+GGG | 0.542987 | 7_3:-65033857 | None:intergenic |
| ATGCCACAAGGAGAGAAGCC+CGG | 0.548759 | 7_3:+65033646 | Msa1116980:CDS |
| AGAATGCAAGGTTCCTCTGA+TGG | 0.563659 | 7_3:-65031003 | None:intergenic |
| CATAAGGGGAAGGGAAACGC+AGG | 0.566273 | 7_3:-65033848 | None:intergenic |
| ACCCCGGGCTTCTCTCCTTG+TGG | 0.566921 | 7_3:-65033649 | None:intergenic |
| TCGTACTTCAAAGATTTGGT+GGG | 0.591251 | 7_3:+65030945 | Msa1116980:CDS |
| CTTGTTTCCTCTCGCTCTCG+CGG | 0.594319 | 7_3:+65030775 | Msa1116980:five_prime_UTR |
| GAGAGAGAGATACCATGTGA+GGG | 0.599690 | 7_3:-65031085 | None:intergenic |
| TTTGGTGGGAAGAGAAGTGA+CGG | 0.599876 | 7_3:+65030959 | Msa1116980:CDS |
| CTGCTTCGTCAGAGGATCAG+TGG | 0.603810 | 7_3:+65033572 | Msa1116980:CDS |
| AGAGAGAGAGATACCATGTG+AGG | 0.605635 | 7_3:-65031086 | None:intergenic |
| TACGTACAATTGCCTCCAGA+AGG | 0.606151 | 7_3:+65033600 | Msa1116980:CDS |
| TTAACAAAATCAACCACCCC+GGG | 0.612233 | 7_3:-65033664 | None:intergenic |
| GTAAGGAACTGCTTCGTCAG+AGG | 0.613409 | 7_3:+65033564 | Msa1116980:CDS |
| GTATTGGTCAACAGAATGCA+AGG | 0.624995 | 7_3:-65031015 | None:intergenic |
| ACAATTGCCTCCAGAAGGTG+TGG | 0.630003 | 7_3:+65033605 | Msa1116980:CDS |
| GATATGGCTGAGAACTAGCA+GGG | 0.651090 | 7_3:-65030818 | None:intergenic |
| AACTGTTGCATGATGCCACA+AGG | 0.651942 | 7_3:+65033634 | Msa1116980:CDS |
| ATTAACAAAATCAACCACCC+CGG | 0.669310 | 7_3:-65033665 | None:intergenic |
| TCAATGTCCACACCTTCTGG+AGG | 0.678011 | 7_3:-65033612 | None:intergenic |
| ACAAGGAGAGAAGCCCGGGG+TGG | 0.693695 | 7_3:+65033651 | Msa1116980:CDS |
| AAGAACGATTTAGCCATCAG+AGG | 0.696928 | 7_3:+65030990 | Msa1116980:CDS |
| GCCACAAGGAGAGAAGCCCG+GGG | 0.716300 | 7_3:+65033648 | Msa1116980:CDS |
| TCAAGACAGATACCCTCACA+TGG | 0.727038 | 7_3:+65031073 | Msa1116980:CDS |
| ATAAGGGGAAGGGAAACGCA+GGG | 0.742911 | 7_3:-65033847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAAATTTATTTTATACTTA+TGG | + | chr7_3:65032534-65032553 | Msa1116980:intron | 10.0% |
| !! | ATATATATTATATTTGACAA+TGG | + | chr7_3:65032573-65032592 | Msa1116980:intron | 10.0% |
| !! | AAAAAAATGAGAAATCAAAA+AGG | - | chr7_3:65030870-65030889 | None:intergenic | 15.0% |
| !! | ATGTAAAATATCATAAATGA+AGG | + | chr7_3:65032415-65032434 | Msa1116980:intron | 15.0% |
| !! | TGTAAAATATCATAAATGAA+GGG | + | chr7_3:65032416-65032435 | Msa1116980:intron | 15.0% |
| !!! | TGTTTTATATCTTCTTTTAA+TGG | - | chr7_3:65033184-65033203 | None:intergenic | 15.0% |
| !! | TGGTGTATTAAAATTCAATT+CGG | + | chr7_3:65031187-65031206 | Msa1116980:intron | 20.0% |
| !! | TTAAAATTCAATTCGGAATT+TGG | + | chr7_3:65031194-65031213 | Msa1116980:intron | 20.0% |
| !! | TAAAATTCAATTCGGAATTT+GGG | + | chr7_3:65031195-65031214 | Msa1116980:intron | 20.0% |
| !!! | TACAAATTTTCACTAACTAA+TGG | - | chr7_3:65031457-65031476 | None:intergenic | 20.0% |
| !! | CAGGTTAAAATAATGATATA+TGG | + | chr7_3:65031607-65031626 | Msa1116980:intron | 20.0% |
| !! | AATAATGATATATGGACATT+AGG | + | chr7_3:65031615-65031634 | Msa1116980:intron | 20.0% |
| !!! | ATAAATGAGAGATTTTACAA+GGG | + | chr7_3:65033287-65033306 | Msa1116980:intron | 20.0% |
| !!! | TTCTTTTAATAGATGCATAA+GGG | - | chr7_3:65033866-65033885 | None:intergenic | 20.0% |
| !!! | TTTCTTTTAATAGATGCATA+AGG | - | chr7_3:65033867-65033886 | None:intergenic | 20.0% |
| ! | AAATCAAAAAGGAGAAGAAA+AGG | - | chr7_3:65030859-65030878 | None:intergenic | 25.0% |
| !!! | TTGAATTTTAATACACCATC+CGG | - | chr7_3:65031185-65031204 | None:intergenic | 25.0% |
| !! | ATTTCATCTGATTGTGATTT+TGG | + | chr7_3:65031223-65031242 | Msa1116980:intron | 25.0% |
| !!! | TTTGGCTTTATGATTATATG+TGG | + | chr7_3:65031241-65031260 | Msa1116980:intron | 25.0% |
| !!! | CGTTTTTTCATATTCAATTG+AGG | + | chr7_3:65031320-65031339 | Msa1116980:intron | 25.0% |
| ! | TCAGTTATTCAATGAATCTA+AGG | + | chr7_3:65031381-65031400 | Msa1116980:intron | 25.0% |
| ! | TAACATAACATAAGAAGGAA+AGG | - | chr7_3:65031573-65031592 | None:intergenic | 25.0% |
| ! | ACAGATAACATAACATAAGA+AGG | - | chr7_3:65031578-65031597 | None:intergenic | 25.0% |
| !! | ATTTGTGTCATTAACATTTG+TGG | + | chr7_3:65031646-65031665 | Msa1116980:intron | 25.0% |
| !!! | TGTTTTAGCTAAGTATATGA+AGG | + | chr7_3:65031735-65031754 | Msa1116980:intron | 25.0% |
| ! | TCATTTCATATTAACAGATG+AGG | - | chr7_3:65032026-65032045 | None:intergenic | 25.0% |
| !! | TTTTAGCATAGATCAAAGTA+AGG | - | chr7_3:65032110-65032129 | None:intergenic | 25.0% |
| ! | TTGATCTATGCTAAAAGTTA+CGG | + | chr7_3:65032114-65032133 | Msa1116980:intron | 25.0% |
| ! | AATGTGGATGAAGTAAAAAA+TGG | - | chr7_3:65032162-65032181 | None:intergenic | 25.0% |
| ! | AGTGTCTAAAAAAAAGAGTT+CGG | + | chr7_3:65032690-65032709 | Msa1116980:intron | 25.0% |
| ! | TATAAACAAATTCACGAACA+AGG | - | chr7_3:65033086-65033105 | None:intergenic | 25.0% |
| !!! | ATAATAGCTTTGTGTTTGAA+TGG | + | chr7_3:65033111-65033130 | Msa1116980:intron | 25.0% |
| !!! | TAATAGCTTTGTGTTTGAAT+GGG | + | chr7_3:65033112-65033131 | Msa1116980:intron | 25.0% |
| ! | ACCAAAAAACCTAAAATTCA+GGG | - | chr7_3:65033158-65033177 | None:intergenic | 25.0% |
| ! | TACCAAAAAACCTAAAATTC+AGG | - | chr7_3:65033159-65033178 | None:intergenic | 25.0% |
| !!! | TGAATTTTAGGTTTTTTGGT+AGG | + | chr7_3:65033158-65033177 | Msa1116980:intron | 25.0% |
| ! | TGTAGAATCAGAGTATATAT+AGG | + | chr7_3:65033230-65033249 | Msa1116980:intron | 25.0% |
| !! | GATAAATGAGAGATTTTACA+AGG | + | chr7_3:65033286-65033305 | Msa1116980:intron | 25.0% |
| !!! | TACAATTGTATGCTATTTTC+TGG | + | chr7_3:65033425-65033444 | Msa1116980:intron | 25.0% |
| !! | TCTTTTAATAGATGCATAAG+GGG | - | chr7_3:65033865-65033884 | None:intergenic | 25.0% |
| ! | AAGAAATGTCAAAACGTATA+TGG | + | chr7_3:65033881-65033900 | Msa1116980:three_prime_UTR | 25.0% |
| ! | ATGTTGTGCATAATAATACT+TGG | - | chr7_3:65033918-65033937 | None:intergenic | 25.0% |
| TTTCTCGTACTTCAAAGATT+TGG | + | chr7_3:65030941-65030960 | Msa1116980:CDS | 30.0% | |
| ! | ATCCAATGAATTTCAAGTAC+CGG | + | chr7_3:65031163-65031182 | Msa1116980:intron | 30.0% |
| TGTTATCTGTGTAATTTCAC+AGG | + | chr7_3:65031588-65031607 | Msa1116980:intron | 30.0% | |
| GTATCCTAATATCACCATAT+TGG | - | chr7_3:65031693-65031712 | None:intergenic | 30.0% | |
| CAAAAGATGTTGAAATTCGT+TGG | + | chr7_3:65031887-65031906 | Msa1116980:intron | 30.0% | |
| TTGAAATTCGTTGGTGTATT+GGG | + | chr7_3:65031896-65031915 | Msa1116980:intron | 30.0% | |
| ! | TAATAGAACCATGCATCTTT+TGG | + | chr7_3:65031923-65031942 | Msa1116980:intron | 30.0% |
| AATAAGAACCAAAAGATGCA+TGG | - | chr7_3:65031934-65031953 | None:intergenic | 30.0% | |
| !!! | TCTTATTTTGTGTCAGCATT+AGG | + | chr7_3:65031947-65031966 | Msa1116980:intron | 30.0% |
| TTTCATATTAACAGATGAGG+AGG | - | chr7_3:65032023-65032042 | None:intergenic | 30.0% | |
| ATGTTTATGTATGTCATGTG+TGG | + | chr7_3:65032057-65032076 | Msa1116980:intron | 30.0% | |
| TGTTTATGTATGTCATGTGT+GGG | + | chr7_3:65032058-65032077 | Msa1116980:intron | 30.0% | |
| GCTATAATTGTGCCAATTTA+CGG | - | chr7_3:65032202-65032221 | None:intergenic | 30.0% | |
| GCACAATTATAGCAATAGTA+GGG | + | chr7_3:65032209-65032228 | Msa1116980:intron | 30.0% | |
| CACAATTATAGCAATAGTAG+GGG | + | chr7_3:65032210-65032229 | Msa1116980:intron | 30.0% | |
| ACAATTATAGCAATAGTAGG+GGG | + | chr7_3:65032211-65032230 | Msa1116980:intron | 30.0% | |
| !! | TTGTGATTTTGATCCTATGT+AGG | + | chr7_3:65032382-65032401 | Msa1116980:intron | 30.0% |
| TAGTTTAGTAAGCCTAATGA+AGG | - | chr7_3:65032948-65032967 | None:intergenic | 30.0% | |
| !!! | AGAATTTACCTTTGTTTTCG+AGG | + | chr7_3:65033328-65033347 | Msa1116980:intron | 30.0% |
| !!! | GAATTTACCTTTGTTTTCGA+GGG | + | chr7_3:65033329-65033348 | Msa1116980:intron | 30.0% |
| !!! | ATTGTATGCTATTTTCTGGA+TGG | + | chr7_3:65033429-65033448 | Msa1116980:intron | 30.0% |
| TTCTGGATGGTTGTTATATT+TGG | + | chr7_3:65033442-65033461 | Msa1116980:intron | 30.0% | |
| ! | AATCAAATCTGAAGCAAGTT+AGG | - | chr7_3:65033491-65033510 | None:intergenic | 30.0% |
| TCATCGTATGAGAATTCTAT+AGG | + | chr7_3:65033699-65033718 | Msa1116980:three_prime_UTR | 30.0% | |
| AATAGTTTCTTCTCTTAAGC+AGG | - | chr7_3:65033750-65033769 | None:intergenic | 30.0% | |
| ! | GATCGTTACCATTTTGGATA+TGG | - | chr7_3:65030837-65030856 | None:intergenic | 35.0% |
| ! | GAAAAGGATCGTTACCATTT+TGG | - | chr7_3:65030843-65030862 | None:intergenic | 35.0% |
| ! | TCGTACTTCAAAGATTTGGT+GGG | + | chr7_3:65030945-65030964 | Msa1116980:CDS | 35.0% |
| !! | TGTTTTCGAGCTTGATGTTA+AGG | - | chr7_3:65031040-65031059 | None:intergenic | 35.0% |
| ATCCGGTACTTGAAATTCAT+TGG | - | chr7_3:65031168-65031187 | None:intergenic | 35.0% | |
| !! | AATGAATTTCAAGTACCGGA+TGG | + | chr7_3:65031167-65031186 | Msa1116980:intron | 35.0% |
| CTTAAATACGAGACCTAAGA+GGG | - | chr7_3:65031292-65031311 | None:intergenic | 35.0% | |
| TCTTAAATACGAGACCTAAG+AGG | - | chr7_3:65031293-65031312 | None:intergenic | 35.0% | |
| ! | CTTTTGCTTATACATGAGAC+CGG | + | chr7_3:65031410-65031429 | Msa1116980:intron | 35.0% |
| AATTTGTAAGTGAACGCTAG+TGG | + | chr7_3:65031469-65031488 | Msa1116980:intron | 35.0% | |
| GAGTCCAATATGGTGATATT+AGG | + | chr7_3:65031686-65031705 | Msa1116980:intron | 35.0% | |
| TAGCTAAAACACGTTCACAA+TGG | - | chr7_3:65031726-65031745 | None:intergenic | 35.0% | |
| GTTGAAATTCGTTGGTGTAT+TGG | + | chr7_3:65031895-65031914 | Msa1116980:intron | 35.0% | |
| ! | CATTAGGTTCCTCATTTTCA+TGG | + | chr7_3:65031963-65031982 | Msa1116980:intron | 35.0% |
| TCATCCACATTTAATCAGAG+TGG | + | chr7_3:65032171-65032190 | Msa1116980:intron | 35.0% | |
| TAATTGTGCCAATTTACGGA+TGG | - | chr7_3:65032198-65032217 | None:intergenic | 35.0% | |
| GGCACAATTATAGCAATAGT+AGG | + | chr7_3:65032208-65032227 | Msa1116980:intron | 35.0% | |
| AACAGTTATAACATATCCCG+AGG | + | chr7_3:65032317-65032336 | Msa1116980:intron | 35.0% | |
| ACAGTTATAACATATCCCGA+GGG | + | chr7_3:65032318-65032337 | Msa1116980:intron | 35.0% | |
| TTGGAATTTGGGAACTATGT+TGG | + | chr7_3:65032342-65032361 | Msa1116980:intron | 35.0% | |
| TGGAATTTGGGAACTATGTT+GGG | + | chr7_3:65032343-65032362 | Msa1116980:intron | 35.0% | |
| TCAATGAAACAGAGTAAGAG+AGG | + | chr7_3:65032741-65032760 | Msa1116980:intron | 35.0% | |
| TGAGAAAAAGAGTCAGATGA+AGG | + | chr7_3:65032847-65032866 | Msa1116980:intron | 35.0% | |
| TAGTGCAGTTAACCTTCATT+AGG | + | chr7_3:65032933-65032952 | Msa1116980:intron | 35.0% | |
| GAATTGCCATGGAAATTTGA+AGG | - | chr7_3:65032987-65033006 | None:intergenic | 35.0% | |
| GCTACATAGAAAAGATCAAC+TGG | - | chr7_3:65033009-65033028 | None:intergenic | 35.0% | |
| TATGTAGCAATCTACTCTGT+AGG | + | chr7_3:65033021-65033040 | Msa1116980:intron | 35.0% | |
| ! | TAATTGTGGCCCTGAATTTT+AGG | + | chr7_3:65033146-65033165 | Msa1116980:intron | 35.0% |
| !!! | GCCCTGAATTTTAGGTTTTT+TGG | + | chr7_3:65033154-65033173 | Msa1116980:intron | 35.0% |
| !! | TTTACAAGGGTATTTGCACA+AGG | + | chr7_3:65033300-65033319 | Msa1116980:intron | 35.0% |
| TTGTACTCTTTGCATGCAAA+AGG | - | chr7_3:65033410-65033429 | None:intergenic | 35.0% | |
| TTTGCTTTCAGCTTTCTGTA+AGG | + | chr7_3:65033547-65033566 | Msa1116980:intron | 35.0% | |
| ATTAACAAAATCAACCACCC+CGG | - | chr7_3:65033668-65033687 | None:intergenic | 35.0% | |
| TAATAGATGCATAAGGGGAA+GGG | - | chr7_3:65033860-65033879 | None:intergenic | 35.0% | |
| TTAATAGATGCATAAGGGGA+AGG | - | chr7_3:65033861-65033880 | None:intergenic | 35.0% | |
| GTTCTCAGCCATATCCAAAA+TGG | + | chr7_3:65030826-65030845 | Msa1116980:exon | 40.0% | |
| CTCGTACTTCAAAGATTTGG+TGG | + | chr7_3:65030944-65030963 | Msa1116980:CDS | 40.0% | |
| AAGAACGATTTAGCCATCAG+AGG | + | chr7_3:65030990-65031009 | Msa1116980:CDS | 40.0% | |
| ! | GTATTGGTCAACAGAATGCA+AGG | - | chr7_3:65031018-65031037 | None:intergenic | 40.0% |
| CGAGCTTGATGTTAAGGTAT+TGG | - | chr7_3:65031034-65031053 | None:intergenic | 40.0% | |
| GCTGTTATAACTACCCTCTT+AGG | + | chr7_3:65031276-65031295 | Msa1116980:intron | 40.0% | |
| ! | TCATATTCAATTGAGGCGTC+TGG | + | chr7_3:65031327-65031346 | Msa1116980:intron | 40.0% |
| ! | GTTTTATCCGTCCATTCCAA+AGG | + | chr7_3:65031536-65031555 | Msa1116980:intron | 40.0% |
| ! | ACAAGACTTCACCTTTGGAA+TGG | - | chr7_3:65031550-65031569 | None:intergenic | 40.0% |
| AAAGGACAAGACTTCACCTT+TGG | - | chr7_3:65031555-65031574 | None:intergenic | 40.0% | |
| TAACATTTGTGGTGTGATGC+TGG | + | chr7_3:65031657-65031676 | Msa1116980:intron | 40.0% | |
| AAACACGTTCACAATGGAGT+GGG | - | chr7_3:65031720-65031739 | None:intergenic | 40.0% | |
| AAAACACGTTCACAATGGAG+TGG | - | chr7_3:65031721-65031740 | None:intergenic | 40.0% | |
| !! | GTGTCGTTTGTTGATTGATG+AGG | + | chr7_3:65031804-65031823 | Msa1116980:intron | 40.0% |
| ! | AGGTTCCTCATTTTCATGGT+TGG | + | chr7_3:65031967-65031986 | Msa1116980:intron | 40.0% |
| ACACACCAACCATGAAAATG+AGG | - | chr7_3:65031975-65031994 | None:intergenic | 40.0% | |
| TGGTCCACTCTGATTAAATG+TGG | - | chr7_3:65032178-65032197 | None:intergenic | 40.0% | |
| !! | GGGGTATTTGTGTTTTGAGT+GGG | + | chr7_3:65032230-65032249 | Msa1116980:intron | 40.0% |
| !! | GGGTATTTGTGTTTTGAGTG+GGG | + | chr7_3:65032231-65032250 | Msa1116980:intron | 40.0% |
| ! | TGGGAACTATGTTGGGATTT+TGG | + | chr7_3:65032350-65032369 | Msa1116980:intron | 40.0% |
| TGATCCTATGTAGGATCAGA+AGG | + | chr7_3:65032391-65032410 | Msa1116980:intron | 40.0% | |
| CATTCCTTCTGATCCTACAT+AGG | - | chr7_3:65032398-65032417 | None:intergenic | 40.0% | |
| ! | TAAATGAAGGGAGCGTAACA+TGG | + | chr7_3:65032428-65032447 | Msa1116980:intron | 40.0% |
| ! | AAATGAAGGGAGCGTAACAT+GGG | + | chr7_3:65032429-65032448 | Msa1116980:intron | 40.0% |
| AGTTCACAAGAGAAGCTAAG+AGG | + | chr7_3:65032634-65032653 | Msa1116980:intron | 40.0% | |
| GTTCACAAGAGAAGCTAAGA+GGG | + | chr7_3:65032635-65032654 | Msa1116980:intron | 40.0% | |
| ! | AGATGAAGGATTGTTGTTGC+TGG | + | chr7_3:65032861-65032880 | Msa1116980:intron | 40.0% |
| AAGATCAACTGGAATTGCCA+TGG | - | chr7_3:65032998-65033017 | None:intergenic | 40.0% | |
| TTCAGGGCCACAATTATTGT+GGG | - | chr7_3:65033142-65033161 | None:intergenic | 40.0% | |
| ATTCAGGGCCACAATTATTG+TGG | - | chr7_3:65033143-65033162 | None:intergenic | 40.0% | |
| TTCAGTTCCCTCGAAAACAA+AGG | - | chr7_3:65033339-65033358 | None:intergenic | 40.0% | |
| ! | AATCTGAAGCAAGTTAGGTC+TGG | - | chr7_3:65033486-65033505 | None:intergenic | 40.0% |
| TTAACAAAATCAACCACCCC+GGG | - | chr7_3:65033667-65033686 | None:intergenic | 40.0% | |
| CGTATGAGAATTCTATAGGC+TGG | + | chr7_3:65033703-65033722 | Msa1116980:three_prime_UTR | 40.0% | |
| GATATGGCTGAGAACTAGCA+GGG | - | chr7_3:65030821-65030840 | None:intergenic | 45.0% | |
| TTTGGTGGGAAGAGAAGTGA+CGG | + | chr7_3:65030959-65030978 | Msa1116980:CDS | 45.0% | |
| AGAATGCAAGGTTCCTCTGA+TGG | - | chr7_3:65031006-65031025 | None:intergenic | 45.0% | |
| TCAAGACAGATACCCTCACA+TGG | + | chr7_3:65031073-65031092 | Msa1116980:CDS | 45.0% | |
| GAGAGAGAGATACCATGTGA+GGG | - | chr7_3:65031088-65031107 | None:intergenic | 45.0% | |
| AGAGAGAGAGATACCATGTG+AGG | - | chr7_3:65031089-65031108 | None:intergenic | 45.0% | |
| TCTCTCTCTCTCTCTCTCTA+GGG | + | chr7_3:65031104-65031123 | Msa1116980:intron | 45.0% | |
| TTGCTTATACATGAGACCGG+AGG | + | chr7_3:65031413-65031432 | Msa1116980:intron | 45.0% | |
| TGCTTATACATGAGACCGGA+GGG | + | chr7_3:65031414-65031433 | Msa1116980:intron | 45.0% | |
| ACACTACTAGATACTCCCTC+CGG | - | chr7_3:65031432-65031451 | None:intergenic | 45.0% | |
| !! | GACTTCACCTTTGGAATGGA+CGG | - | chr7_3:65031546-65031565 | None:intergenic | 45.0% |
| AGAGTGGACCATCCGTAAAT+TGG | + | chr7_3:65032187-65032206 | Msa1116980:intron | 45.0% | |
| !!! | GGGGGTATTTGTGTTTTGAG+TGG | + | chr7_3:65032229-65032248 | Msa1116980:intron | 45.0% |
| TATAACATATCCCGAGGGCT+TGG | + | chr7_3:65032323-65032342 | Msa1116980:intron | 45.0% | |
| ACAAGAGAAGCTAAGAGGGA+AGG | + | chr7_3:65032639-65032658 | Msa1116980:intron | 45.0% | |
| AAGCTAAGAGGGAAGGTAGT+TGG | + | chr7_3:65032646-65032665 | Msa1116980:intron | 45.0% | |
| TAAGAGGGAAGGTAGTTGGA+AGG | + | chr7_3:65032650-65032669 | Msa1116980:intron | 45.0% | |
| ! | GACACTTGAGACTTTTCTCC+AGG | - | chr7_3:65032676-65032695 | None:intergenic | 45.0% |
| AAACAGAGTAAGAGAGGCTG+AGG | + | chr7_3:65032747-65032766 | Msa1116980:intron | 45.0% | |
| AACAGAGTAAGAGAGGCTGA+GGG | + | chr7_3:65032748-65032767 | Msa1116980:intron | 45.0% | |
| GAGAAAGACAATGAGTCGAG+AGG | + | chr7_3:65032775-65032794 | Msa1116980:intron | 45.0% | |
| ! | TGCTGGCTGTGTGTCATTAT+CGG | + | chr7_3:65032904-65032923 | Msa1116980:intron | 45.0% |
| ACCGCTCCTTCAAATTTCCA+TGG | + | chr7_3:65032978-65032997 | Msa1116980:intron | 45.0% | |
| GCCATGGAAATTTGAAGGAG+CGG | - | chr7_3:65032982-65033001 | None:intergenic | 45.0% | |
| GGGATGTCCCACAATAATTG+TGG | + | chr7_3:65033132-65033151 | Msa1116980:intron | 45.0% | |
| TTTATCATAGCAGCATGCGC+AGG | - | chr7_3:65033263-65033282 | None:intergenic | 45.0% | |
| TACGTACAATTGCCTCCAGA+AGG | + | chr7_3:65033600-65033619 | Msa1116980:CDS | 45.0% | |
| AGTTCAATGTCCACACCTTC+TGG | - | chr7_3:65033618-65033637 | None:intergenic | 45.0% | |
| AACTGTTGCATGATGCCACA+AGG | + | chr7_3:65033634-65033653 | Msa1116980:CDS | 45.0% | |
| GGATATGGCTGAGAACTAGC+AGG | - | chr7_3:65030822-65030841 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTCT+AGG | + | chr7_3:65031099-65031118 | Msa1116980:intron | 50.0% | |
| CATTTGTGGTGTGATGCTGG+AGG | + | chr7_3:65031660-65031679 | Msa1116980:intron | 50.0% | |
| CTGGAGGTCTGAGTCCAATA+TGG | + | chr7_3:65031676-65031695 | Msa1116980:intron | 50.0% | |
| CGTTCACAATGGAGTGGGAA+AGG | - | chr7_3:65031715-65031734 | None:intergenic | 50.0% | |
| !! | GTTTTGAGTGGGGCTACTGA+TGG | + | chr7_3:65032241-65032260 | Msa1116980:intron | 50.0% |
| TATCCCGAGGGCTTGGAATT+TGG | + | chr7_3:65032330-65032349 | Msa1116980:intron | 50.0% | |
| ATCCCGAGGGCTTGGAATTT+GGG | + | chr7_3:65032331-65032350 | Msa1116980:intron | 50.0% | |
| TTCCCAAATTCCAAGCCCTC+GGG | - | chr7_3:65032336-65032355 | None:intergenic | 50.0% | |
| GTTCCCAAATTCCAAGCCCT+CGG | - | chr7_3:65032337-65032356 | None:intergenic | 50.0% | |
| AGGCATGAACAGAGAGGTTG+AGG | + | chr7_3:65032795-65032814 | Msa1116980:intron | 50.0% | |
| GGCATGAACAGAGAGGTTGA+GGG | + | chr7_3:65032796-65032815 | Msa1116980:intron | 50.0% | |
| TTGTTGCTGGCATGTGTAGC+TGG | + | chr7_3:65032874-65032893 | Msa1116980:intron | 50.0% | |
| ! | GTGTAGCTGGTTGTTGTTGC+TGG | + | chr7_3:65032887-65032906 | Msa1116980:intron | 50.0% |
| GCATGCAAAAGGTGACGATG+AGG | - | chr7_3:65033399-65033418 | None:intergenic | 50.0% | |
| GTAAGGAACTGCTTCGTCAG+AGG | + | chr7_3:65033564-65033583 | Msa1116980:CDS | 50.0% | |
| ACAATTGCCTCCAGAAGGTG+TGG | + | chr7_3:65033605-65033624 | Msa1116980:CDS | 50.0% | |
| TCAATGTCCACACCTTCTGG+AGG | - | chr7_3:65033615-65033634 | None:intergenic | 50.0% | |
| ATAAGGGGAAGGGAAACGCA+GGG | - | chr7_3:65033850-65033869 | None:intergenic | 50.0% | |
| CTTGTTTCCTCTCGCTCTCG+CGG | + | chr7_3:65030775-65030794 | Msa1116980:five_prime_UTR | 55.0% | |
| ! | GTCGAGAGGCATGAACAGAG+AGG | + | chr7_3:65032789-65032808 | Msa1116980:intron | 55.0% |
| CAACCCCTCTGTCTGTCTCT+CGG | - | chr7_3:65032822-65032841 | None:intergenic | 55.0% | |
| CTGCTTCGTCAGAGGATCAG+TGG | + | chr7_3:65033572-65033591 | Msa1116980:CDS | 55.0% | |
| ATGCCACAAGGAGAGAAGCC+CGG | + | chr7_3:65033646-65033665 | Msa1116980:CDS | 55.0% | |
| CATAAGGGGAAGGGAAACGC+AGG | - | chr7_3:65033851-65033870 | None:intergenic | 55.0% | |
| CGCGAGAGCGAGAGGAAACA+AGG | - | chr7_3:65030777-65030796 | None:intergenic | 60.0% | |
| GGGAAGGTAGTTGGAAGGCC+TGG | + | chr7_3:65032655-65032674 | Msa1116980:intron | 60.0% | |
| AGGGCCGAGAGACAGACAGA+GGG | + | chr7_3:65032815-65032834 | Msa1116980:intron | 60.0% | |
| TGCCACAAGGAGAGAAGCCC+GGG | + | chr7_3:65033647-65033666 | Msa1116980:CDS | 60.0% | |
| GAGGGCCGAGAGACAGACAG+AGG | + | chr7_3:65032814-65032833 | Msa1116980:intron | 65.0% | |
| GGGCCGAGAGACAGACAGAG+GGG | + | chr7_3:65032816-65032835 | Msa1116980:intron | 65.0% | |
| GCCACAAGGAGAGAAGCCCG+GGG | + | chr7_3:65033648-65033667 | Msa1116980:CDS | 65.0% | |
| ACCCCGGGCTTCTCTCCTTG+TGG | - | chr7_3:65033652-65033671 | None:intergenic | 65.0% | |
| ACAAGGAGAGAAGCCCGGGG+TGG | + | chr7_3:65033651-65033670 | Msa1116980:CDS | 65.0% | |
| GAGTGAGCCGCGAGAGCGAG+AGG | - | chr7_3:65030785-65030804 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 65030754 | 65033984 | 65030754 | ID=Msa1116980;Name=Msa1116980 |
| chr7_3 | mRNA | 65030754 | 65033984 | 65030754 | ID=Msa1116980-mRNA-1;Parent=Msa1116980;Name=Msa1116980-mRNA-1;_AED=0.19;_eAED=0.19;_QI=91|1|1|1|0.33|0|4|263|93 |
| chr7_3 | exon | 65030754 | 65030847 | 65030754 | ID=Msa1116980-mRNA-1:exon:15434;Parent=Msa1116980-mRNA-1 |
| chr7_3 | exon | 65030936 | 65031094 | 65030936 | ID=Msa1116980-mRNA-1:exon:15435;Parent=Msa1116980-mRNA-1 |
| chr7_3 | exon | 65033558 | 65033737 | 65033558 | ID=Msa1116980-mRNA-1:exon:15436;Parent=Msa1116980-mRNA-1 |
| chr7_3 | exon | 65033782 | 65033984 | 65033782 | ID=Msa1116980-mRNA-1:exon:15437;Parent=Msa1116980-mRNA-1 |
| chr7_3 | five_prime_UTR | 65030754 | 65030844 | 65030754 | ID=Msa1116980-mRNA-1:five_prime_utr;Parent=Msa1116980-mRNA-1 |
| chr7_3 | CDS | 65030845 | 65030847 | 65030845 | ID=Msa1116980-mRNA-1:cds;Parent=Msa1116980-mRNA-1 |
| chr7_3 | CDS | 65030936 | 65031094 | 65030936 | ID=Msa1116980-mRNA-1:cds;Parent=Msa1116980-mRNA-1 |
| chr7_3 | CDS | 65033558 | 65033677 | 65033558 | ID=Msa1116980-mRNA-1:cds;Parent=Msa1116980-mRNA-1 |
| chr7_3 | three_prime_UTR | 65033678 | 65033737 | 65033678 | ID=Msa1116980-mRNA-1:three_prime_utr;Parent=Msa1116980-mRNA-1 |
| chr7_3 | three_prime_UTR | 65033782 | 65033984 | 65033782 | ID=Msa1116980-mRNA-1:three_prime_utr;Parent=Msa1116980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
