Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585650 | XP_029124621.1 | 98.701 | 77 | 1 | 0 | 1 | 77 | 398 | 474 | 7.18e-56 | 188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585650 | sp|Q9M9L0|APC11_ARATH | 100.000 | 76 | 0 | 0 | 1 | 76 | 8 | 83 | 2.18e-52 | 160 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036370 | Msa0585650 | -0.832965 | 6.996481e-56 | -8.615850e-47 |
| Msa0055070 | Msa0585650 | -0.802633 | 5.114026e-49 | -8.615850e-47 |
| Msa0072170 | Msa0585650 | -0.849662 | 2.799557e-60 | -8.615850e-47 |
| Msa0094010 | Msa0585650 | -0.802254 | 6.121799e-49 | -8.615850e-47 |
| Msa0095360 | Msa0585650 | -0.803206 | 3.893653e-49 | -8.615850e-47 |
| Msa0101020 | Msa0585650 | -0.807920 | 3.992613e-50 | -8.615850e-47 |
| Msa0119320 | Msa0585650 | -0.818088 | 2.352634e-52 | -8.615850e-47 |
| Msa0120540 | Msa0585650 | -0.835829 | 1.336431e-56 | -8.615850e-47 |
| Msa0145110 | Msa0585650 | -0.812166 | 4.861047e-51 | -8.615850e-47 |
| Msa0158130 | Msa0585650 | 0.811990 | 5.310948e-51 | -8.615850e-47 |
| Msa0161070 | Msa0585650 | 0.826072 | 3.316192e-54 | -8.615850e-47 |
| Msa0194720 | Msa0585650 | -0.818268 | 2.141941e-52 | -8.615850e-47 |
| Msa0223920 | Msa0585650 | -0.801842 | 7.439618e-49 | -8.615850e-47 |
| Msa0233380 | Msa0585650 | -0.804493 | 2.104052e-49 | -8.615850e-47 |
| Msa0387910 | Msa0585650 | -0.827399 | 1.598514e-54 | -8.615850e-47 |
| Msa0388650 | Msa0585650 | -0.800901 | 1.159593e-48 | -8.615850e-47 |
| Msa0421260 | Msa0585650 | -0.801824 | 7.501900e-49 | -8.615850e-47 |
| Msa0442310 | Msa0585650 | -0.811565 | 6.569648e-51 | -8.615850e-47 |
| Msa0443430 | Msa0585650 | -0.814123 | 1.808329e-51 | -8.615850e-47 |
| Msa0452810 | Msa0585650 | 0.827113 | 1.871546e-54 | -8.615850e-47 |
| Msa0467220 | Msa0585650 | -0.803447 | 3.471654e-49 | -8.615850e-47 |
| Msa0241740 | Msa0585650 | -0.812097 | 5.033116e-51 | -8.615850e-47 |
| Msa0265160 | Msa0585650 | -0.853019 | 3.150975e-61 | -8.615850e-47 |
| Msa0265230 | Msa0585650 | 0.802346 | 5.860701e-49 | -8.615850e-47 |
| Msa0266210 | Msa0585650 | -0.805037 | 1.619785e-49 | -8.615850e-47 |
| Msa0266240 | Msa0585650 | -0.813366 | 2.654049e-51 | -8.615850e-47 |
| Msa0287670 | Msa0585650 | -0.813996 | 1.929086e-51 | -8.615850e-47 |
| Msa0303160 | Msa0585650 | -0.831157 | 1.956933e-55 | -8.615850e-47 |
| Msa0351330 | Msa0585650 | -0.805581 | 1.245557e-49 | -8.615850e-47 |
| Msa0485680 | Msa0585650 | -0.802418 | 5.662518e-49 | -8.615850e-47 |
| Msa0495220 | Msa0585650 | -0.817030 | 4.073784e-52 | -8.615850e-47 |
| Msa0529280 | Msa0585650 | 0.822109 | 2.823713e-53 | -8.615850e-47 |
| Msa0534410 | Msa0585650 | -0.810389 | 1.181148e-50 | -8.615850e-47 |
| Msa0555640 | Msa0585650 | -0.808721 | 2.694940e-50 | -8.615850e-47 |
| Msa0569800 | Msa0585650 | -0.819008 | 1.455156e-52 | -8.615850e-47 |
| Msa0582280 | Msa0585650 | -0.852049 | 5.955905e-61 | -8.615850e-47 |
| Msa0585620 | Msa0585650 | 0.957979 | 7.279123e-116 | -8.615850e-47 |
| Msa0585650 | Msa0594200 | -0.815702 | 8.075612e-52 | -8.615850e-47 |
| Msa0585650 | Msa0602370 | -0.809204 | 2.124372e-50 | -8.615850e-47 |
| Msa0585650 | Msa0609220 | -0.812231 | 4.703714e-51 | -8.615850e-47 |
| Msa0585650 | Msa0621240 | -0.802588 | 5.225342e-49 | -8.615850e-47 |
| Msa0585650 | Msa0640940 | -0.803846 | 2.868779e-49 | -8.615850e-47 |
| Msa0585650 | Msa0713350 | -0.823622 | 1.254497e-53 | -8.615850e-47 |
| Msa0585650 | Msa0740060 | -0.803593 | 3.237276e-49 | -8.615850e-47 |
| Msa0585650 | Msa0743530 | -0.803167 | 3.966768e-49 | -8.615850e-47 |
| Msa0585650 | Msa0776750 | -0.821477 | 3.954658e-53 | -8.615850e-47 |
| Msa0585650 | Msa0798810 | 0.809425 | 1.904105e-50 | -8.615850e-47 |
| Msa0585650 | Msa0820530 | 0.802324 | 5.920504e-49 | -8.615850e-47 |
| Msa0585650 | Msa0822170 | -0.800837 | 1.194939e-48 | -8.615850e-47 |
| Msa0585650 | Msa0830210 | -0.805273 | 1.445609e-49 | -8.615850e-47 |
| Msa0585650 | Msa0837480 | -0.813204 | 2.881672e-51 | -8.615850e-47 |
| Msa0585650 | Msa0857300 | -0.810845 | 9.414340e-51 | -8.615850e-47 |
| Msa0585650 | Msa0861830 | -0.807425 | 5.086164e-50 | -8.615850e-47 |
| Msa0585650 | Msa0869010 | -0.816780 | 4.634614e-52 | -8.615850e-47 |
| Msa0585650 | Msa0930820 | -0.823733 | 1.181734e-53 | -8.615850e-47 |
| Msa0585650 | Msa0947800 | -0.825720 | 4.018657e-54 | -8.615850e-47 |
| Msa0585650 | Msa1006010 | 0.801512 | 8.694562e-49 | -8.615850e-47 |
| Msa0585650 | Msa1034290 | -0.801451 | 8.947747e-49 | -8.615850e-47 |
| Msa0585650 | Msa1036740 | -0.803318 | 3.691058e-49 | -8.615850e-47 |
| Msa0585650 | Msa1068870 | -0.831129 | 1.987848e-55 | -8.615850e-47 |
| Msa0585650 | Msa1087510 | 0.803695 | 3.083743e-49 | -8.615850e-47 |
| Msa0585650 | Msa1088290 | -0.806982 | 6.313888e-50 | -8.615850e-47 |
| Msa0585650 | Msa1109820 | -0.800221 | 1.595408e-48 | -8.615850e-47 |
| Msa0585650 | Msa1116980 | 0.839657 | 1.389655e-57 | -8.615850e-47 |
| Msa0585650 | Msa1127430 | -0.830138 | 3.475985e-55 | -8.615850e-47 |
| Msa0585650 | Msa1168550 | -0.805250 | 1.461500e-49 | -8.615850e-47 |
| Msa0585650 | Msa1168590 | -0.815061 | 1.120960e-51 | -8.615850e-47 |
| Msa0585650 | Msa1174310 | -0.831106 | 2.014934e-55 | -8.615850e-47 |
| Msa0585650 | Msa1178370 | -0.802934 | 4.432166e-49 | -8.615850e-47 |
| Msa0585650 | Msa1188560 | -0.814136 | 1.796790e-51 | -8.615850e-47 |
| Msa0585650 | Msa1205480 | -0.810439 | 1.152002e-50 | -8.615850e-47 |
| Msa0585650 | Msa1211000 | -0.804763 | 1.848117e-49 | -8.615850e-47 |
| Msa0585650 | Msa1211050 | 0.815178 | 1.055798e-51 | -8.615850e-47 |
| Msa0585650 | Msa1211350 | -0.802540 | 5.345438e-49 | -8.615850e-47 |
| Msa0585650 | Msa1235400 | -0.803200 | 3.905355e-49 | -8.615850e-47 |
| Msa0585650 | Msa1253810 | -0.809506 | 1.829618e-50 | -8.615850e-47 |
| Msa0585650 | Msa1296300 | -0.810066 | 1.386787e-50 | -8.615850e-47 |
| Msa0585650 | Msa1314770 | -0.803037 | 4.219577e-49 | -8.615850e-47 |
| Msa0585650 | Msa1329800 | -0.844975 | 5.418965e-59 | -8.615850e-47 |
| Msa0585650 | Msa1335560 | -0.803248 | 3.816826e-49 | -8.615850e-47 |
| Msa0585650 | Msa1336040 | -0.819506 | 1.120677e-52 | -8.615850e-47 |
| Msa0585650 | Msa1350690 | -0.813593 | 2.366715e-51 | -8.615850e-47 |
| Msa0585650 | Msa1360240 | -0.800188 | 1.620070e-48 | -8.615850e-47 |
| Msa0585650 | Msa1381650 | -0.801153 | 1.029776e-48 | -8.615850e-47 |
| Msa0585650 | Msa1396940 | -0.818828 | 1.599091e-52 | -8.615850e-47 |
| Msa0585650 | Msa1426910 | -0.818379 | 2.021669e-52 | -8.615850e-47 |
| Msa0585650 | Msa1433220 | -0.802008 | 6.876942e-49 | -8.615850e-47 |
| Msa0585650 | Msa1451150 | -0.808887 | 2.482683e-50 | -8.615850e-47 |
| Msa0585650 | Msa1454960 | -0.809574 | 1.769433e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585650 | MtrunA17_Chr4g0001531 | 100.000 | 57 | 0 | 0 | 21 | 77 | 1 | 57 | 1.67e-38 | 122 |
| Msa0585650 | MtrunA17_Chr7g0214441 | 100.000 | 57 | 0 | 0 | 21 | 77 | 1 | 57 | 1.67e-38 | 122 |
| Msa0585650 | MtrunA17_Chr4g0024331 | 38.272 | 81 | 42 | 2 | 1 | 76 | 36 | 113 | 1.72e-15 | 65.5 |
| Msa0585650 | MtrunA17_Chr2g0322741 | 37.037 | 81 | 43 | 2 | 1 | 76 | 37 | 114 | 8.67e-15 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0585650 | AT3G05870.1 | 100.000 | 76 | 0 | 0 | 1 | 76 | 11 | 86 | 1.67e-53 | 160 |
| Msa0585650 | AT3G05870.2 | 100.000 | 76 | 0 | 0 | 1 | 76 | 11 | 86 | 1.67e-53 | 160 |
| Msa0585650 | AT3G05870.6 | 100.000 | 76 | 0 | 0 | 1 | 76 | 11 | 86 | 1.67e-53 | 160 |
| Msa0585650 | AT3G05870.4 | 100.000 | 76 | 0 | 0 | 1 | 76 | 14 | 89 | 2.07e-53 | 160 |
| Msa0585650 | AT3G05870.3 | 100.000 | 76 | 0 | 0 | 1 | 76 | 14 | 89 | 2.07e-53 | 160 |
| Msa0585650 | AT3G05870.5 | 100.000 | 76 | 0 | 0 | 1 | 76 | 14 | 89 | 2.07e-53 | 160 |
| Msa0585650 | AT3G05870.7 | 100.000 | 76 | 0 | 0 | 1 | 76 | 2 | 77 | 5.89e-53 | 159 |
| Msa0585650 | AT5G20570.1 | 38.272 | 81 | 42 | 2 | 1 | 76 | 37 | 114 | 3.25e-15 | 65.1 |
| Msa0585650 | AT5G26640.1 | 84.375 | 32 | 5 | 0 | 8 | 39 | 5 | 36 | 2.30e-14 | 61.6 |
| Msa0585650 | AT3G42830.1 | 38.272 | 81 | 42 | 2 | 1 | 76 | 34 | 111 | 3.97e-14 | 62.4 |
Find 26 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTGTTGCTTCATGGACT+TGG | 0.279744 | 4_2:+6694543 | Msa0585650:CDS |
| CGTCGGGAATGGCAATTTAA+AGG | 0.290239 | 4_2:+6695520 | Msa0585650:CDS |
| ATTTGCATTGTATCTTGAAA+TGG | 0.352612 | 4_2:+6695458 | Msa0585650:CDS |
| TGTCCTGATTGTAAACTTCC+CGG | 0.396496 | 4_2:+6694617 | Msa0585650:CDS |
| GATGGCATGCTGTTGCTTCA+TGG | 0.397141 | 4_2:+6694537 | None:intergenic |
| GCCATTCCCGACGGCACATT+GGG | 0.397444 | 4_2:-6695510 | None:intergenic |
| ATTTGTAGGATGGCCTTTGA+TGG | 0.411828 | 4_2:+6694590 | Msa0585650:CDS |
| TGCTGTTGCTTCATGGACTT+GGG | 0.419431 | 4_2:+6694544 | Msa0585650:CDS |
| ATGAAACATGTGGGATTTGT+AGG | 0.429235 | 4_2:+6694576 | Msa0585650:CDS |
| TGCCATTCCCGACGGCACAT+TGG | 0.451421 | 4_2:-6695511 | None:intergenic |
| ACTGAGCGGGCAGTCATCCC+CGG | 0.466023 | 4_2:-6694636 | None:intergenic |
| GTCCTGATTGTAAACTTCCC+GGG | 0.472599 | 4_2:+6694618 | Msa0585650:CDS |
| GCCCAATGTGCCGTCGGGAA+TGG | 0.481653 | 4_2:+6695509 | Msa0585650:CDS |
| TTTGCATTGTATCTTGAAAT+GGG | 0.482104 | 4_2:+6695459 | Msa0585650:CDS |
| CACATTGCCCAATGTGCCGT+CGG | 0.515957 | 4_2:+6695503 | Msa0585650:CDS |
| TCCCCGGGAAGTTTACAATC+AGG | 0.518100 | 4_2:-6694620 | None:intergenic |
| CTTTAAATTGCCATTCCCGA+CGG | 0.544857 | 4_2:-6695519 | None:intergenic |
| CATTGGGCAATGTGCTTGTG+AGG | 0.551130 | 4_2:-6695494 | None:intergenic |
| ACATTGCCCAATGTGCCGTC+GGG | 0.562769 | 4_2:+6695504 | Msa0585650:CDS |
| CTGAGCGGGCAGTCATCCCC+GGG | 0.565342 | 4_2:-6694635 | None:intergenic |
| TCCTGATTGTAAACTTCCCG+GGG | 0.576107 | 4_2:+6694619 | Msa0585650:CDS |
| TTAGCAGTAGCTTACTGAGC+GGG | 0.577553 | 4_2:-6694649 | None:intergenic |
| ATCAGGACAACATCCATCAA+AGG | 0.626104 | 4_2:-6694603 | None:intergenic |
| AACATGTGGGATTTGTAGGA+TGG | 0.654714 | 4_2:+6694580 | Msa0585650:CDS |
| GATGCACAAGATGAAACATG+TGG | 0.720145 | 4_2:+6694566 | Msa0585650:CDS |
| ATGCACAAGATGAAACATGT+GGG | 0.725526 | 4_2:+6694567 | Msa0585650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAGTTTCATAAATATAATT+AGG | + | chr4_2:6695059-6695078 | Msa0585650:intron | 15.0% |
| !! | GTAGTTTCATAAATATAATT+AGG | + | chr4_2:6695059-6695078 | Msa0585650:intron | 15.0% |
| !! | TATTTGCATAAATTTGTCTT+TGG | + | chr4_2:6694703-6694722 | Msa0585650:intron | 20.0% |
| !!! | TCAGTTCATTTCTAATTTTT+CGG | + | chr4_2:6695000-6695019 | Msa0585650:intron | 20.0% |
| !!! | TTATAAAAGCTTTATTCTCA+AGG | + | chr4_2:6695129-6695148 | Msa0585650:intron | 20.0% |
| !!! | GTAATTGACAATTCTATTTT+GGG | + | chr4_2:6695205-6695224 | Msa0585650:intron | 20.0% |
| !! | TATTTGCATAAATTTGTCTT+TGG | + | chr4_2:6694703-6694722 | Msa0585650:intron | 20.0% |
| !!! | TCAGTTCATTTCTAATTTTT+CGG | + | chr4_2:6695000-6695019 | Msa0585650:intron | 20.0% |
| !!! | TTATAAAAGCTTTATTCTCA+AGG | + | chr4_2:6695129-6695148 | Msa0585650:intron | 20.0% |
| !!! | GTAATTGACAATTCTATTTT+GGG | + | chr4_2:6695205-6695224 | Msa0585650:intron | 20.0% |
| !! | AACTAAAAGTCTCTTTTCTA+AGG | - | chr4_2:6694870-6694889 | None:intergenic | 25.0% |
| !!! | TAATTTTTCGGAATGTAGAT+AGG | + | chr4_2:6695012-6695031 | Msa0585650:intron | 25.0% |
| ! | AAACTACAAATGATGTTTAG+AGG | - | chr4_2:6695046-6695065 | None:intergenic | 25.0% |
| ! | TGAAAAATTCTCAATTATGC+AGG | - | chr4_2:6695169-6695188 | None:intergenic | 25.0% |
| ! | AATTGTCAATTACCATCTTA+TGG | - | chr4_2:6695198-6695217 | None:intergenic | 25.0% |
| !! | GGTAATTGACAATTCTATTT+TGG | + | chr4_2:6695204-6695223 | Msa0585650:intron | 25.0% |
| ! | AGAATCATATTTGATCAGTT+AGG | - | chr4_2:6695357-6695376 | None:intergenic | 25.0% |
| ! | ATTTGCATTGTATCTTGAAA+TGG | + | chr4_2:6695458-6695477 | Msa0585650:CDS | 25.0% |
| ! | TTTGCATTGTATCTTGAAAT+GGG | + | chr4_2:6695459-6695478 | Msa0585650:CDS | 25.0% |
| !! | AACTAAAAGTCTCTTTTCTA+AGG | - | chr4_2:6694870-6694889 | None:intergenic | 25.0% |
| !!! | TAATTTTTCGGAATGTAGAT+AGG | + | chr4_2:6695012-6695031 | Msa0585650:intron | 25.0% |
| ! | AAACTACAAATGATGTTTAG+AGG | - | chr4_2:6695046-6695065 | None:intergenic | 25.0% |
| ! | TGAAAAATTCTCAATTATGC+AGG | - | chr4_2:6695169-6695188 | None:intergenic | 25.0% |
| ! | AATTGTCAATTACCATCTTA+TGG | - | chr4_2:6695198-6695217 | None:intergenic | 25.0% |
| !! | GGTAATTGACAATTCTATTT+TGG | + | chr4_2:6695204-6695223 | Msa0585650:intron | 25.0% |
| ! | AGAATCATATTTGATCAGTT+AGG | - | chr4_2:6695357-6695376 | None:intergenic | 25.0% |
| ! | ATTTGCATTGTATCTTGAAA+TGG | + | chr4_2:6695458-6695477 | Msa0585650:CDS | 25.0% |
| ! | TTTGCATTGTATCTTGAAAT+GGG | + | chr4_2:6695459-6695478 | Msa0585650:CDS | 25.0% |
| GTAAAGCTTAACTTCATAAC+TGG | + | chr4_2:6694776-6694795 | Msa0585650:intron | 30.0% | |
| CTACAAAGATGTATTGTTAC+TGG | + | chr4_2:6695090-6695109 | Msa0585650:intron | 30.0% | |
| !! | AAGCTTTATTCTCAAGGAAT+TGG | + | chr4_2:6695135-6695154 | Msa0585650:intron | 30.0% |
| AATTCTCAAGCATGATTTCA+CGG | - | chr4_2:6695231-6695250 | None:intergenic | 30.0% | |
| AATGGCAATTTAAAGGTTGA+TGG | + | chr4_2:6695527-6695546 | Msa0585650:CDS | 30.0% | |
| GTAAAGCTTAACTTCATAAC+TGG | + | chr4_2:6694776-6694795 | Msa0585650:intron | 30.0% | |
| CTACAAAGATGTATTGTTAC+TGG | + | chr4_2:6695090-6695109 | Msa0585650:intron | 30.0% | |
| !! | AAGCTTTATTCTCAAGGAAT+TGG | + | chr4_2:6695135-6695154 | Msa0585650:intron | 30.0% |
| AATTCTCAAGCATGATTTCA+CGG | - | chr4_2:6695231-6695250 | None:intergenic | 30.0% | |
| ATGCACAAGATGAAACATGT+GGG | + | chr4_2:6694567-6694586 | Msa0585650:CDS | 35.0% | |
| ATGAAACATGTGGGATTTGT+AGG | + | chr4_2:6694576-6694595 | Msa0585650:CDS | 35.0% | |
| !!! | TTTTTGAGTTCTCTACATGC+AGG | + | chr4_2:6694965-6694984 | Msa0585650:intron | 35.0% |
| ! | TTTTCAGAAGAGCCATAAGA+TGG | + | chr4_2:6695183-6695202 | Msa0585650:intron | 35.0% |
| AGAAACAAAGACAGACATCA+CGG | - | chr4_2:6695265-6695284 | None:intergenic | 35.0% | |
| ! | TGATGTCTGTCTTTGTTTCT+CGG | + | chr4_2:6695265-6695284 | Msa0585650:intron | 35.0% |
| ! | GCATAACTTGTCTTTCTCTA+CGG | + | chr4_2:6695307-6695326 | Msa0585650:intron | 35.0% |
| ! | TTTTCCTACTACTTGCAGTT+TGG | + | chr4_2:6695413-6695432 | Msa0585650:intron | 35.0% |
| TTTCCTACTACTTGCAGTTT+GGG | + | chr4_2:6695414-6695433 | Msa0585650:intron | 35.0% | |
| ATGCACAAGATGAAACATGT+GGG | + | chr4_2:6694567-6694586 | Msa0585650:CDS | 35.0% | |
| ATGAAACATGTGGGATTTGT+AGG | + | chr4_2:6694576-6694595 | Msa0585650:CDS | 35.0% | |
| !!! | TTTTTGAGTTCTCTACATGC+AGG | + | chr4_2:6694965-6694984 | Msa0585650:intron | 35.0% |
| ! | TTTTCAGAAGAGCCATAAGA+TGG | + | chr4_2:6695183-6695202 | Msa0585650:intron | 35.0% |
| AGAAACAAAGACAGACATCA+CGG | - | chr4_2:6695265-6695284 | None:intergenic | 35.0% | |
| ! | TGATGTCTGTCTTTGTTTCT+CGG | + | chr4_2:6695265-6695284 | Msa0585650:intron | 35.0% |
| ! | GCATAACTTGTCTTTCTCTA+CGG | + | chr4_2:6695307-6695326 | Msa0585650:intron | 35.0% |
| ! | TTTTCCTACTACTTGCAGTT+TGG | + | chr4_2:6695413-6695432 | Msa0585650:intron | 35.0% |
| TTTCCTACTACTTGCAGTTT+GGG | + | chr4_2:6695414-6695433 | Msa0585650:intron | 35.0% | |
| GATGCACAAGATGAAACATG+TGG | + | chr4_2:6694566-6694585 | Msa0585650:CDS | 40.0% | |
| AACATGTGGGATTTGTAGGA+TGG | + | chr4_2:6694580-6694599 | Msa0585650:CDS | 40.0% | |
| ATTTGTAGGATGGCCTTTGA+TGG | + | chr4_2:6694590-6694609 | Msa0585650:CDS | 40.0% | |
| ATCAGGACAACATCCATCAA+AGG | - | chr4_2:6694606-6694625 | None:intergenic | 40.0% | |
| TGTCCTGATTGTAAACTTCC+CGG | + | chr4_2:6694617-6694636 | Msa0585650:CDS | 40.0% | |
| ATTAGCAGTAGCTTACTGAG+CGG | - | chr4_2:6694653-6694672 | None:intergenic | 40.0% | |
| GCTACTGCTAATGTTGTCTT+TGG | + | chr4_2:6694661-6694680 | Msa0585650:intron | 40.0% | |
| TTTCGGAATGTAGATAGGTC+TGG | + | chr4_2:6695017-6695036 | Msa0585650:intron | 40.0% | |
| TGTATTGTTACTGGCATGCA+AGG | + | chr4_2:6695099-6695118 | Msa0585650:intron | 40.0% | |
| TTCCTACTACTTGCAGTTTG+GGG | + | chr4_2:6695415-6695434 | Msa0585650:intron | 40.0% | |
| CTTTAAATTGCCATTCCCGA+CGG | - | chr4_2:6695522-6695541 | None:intergenic | 40.0% | |
| GATGCACAAGATGAAACATG+TGG | + | chr4_2:6694566-6694585 | Msa0585650:CDS | 40.0% | |
| AACATGTGGGATTTGTAGGA+TGG | + | chr4_2:6694580-6694599 | Msa0585650:CDS | 40.0% | |
| ATTTGTAGGATGGCCTTTGA+TGG | + | chr4_2:6694590-6694609 | Msa0585650:CDS | 40.0% | |
| ATCAGGACAACATCCATCAA+AGG | - | chr4_2:6694606-6694625 | None:intergenic | 40.0% | |
| TGTCCTGATTGTAAACTTCC+CGG | + | chr4_2:6694617-6694636 | Msa0585650:CDS | 40.0% | |
| ATTAGCAGTAGCTTACTGAG+CGG | - | chr4_2:6694653-6694672 | None:intergenic | 40.0% | |
| GCTACTGCTAATGTTGTCTT+TGG | + | chr4_2:6694661-6694680 | Msa0585650:intron | 40.0% | |
| TTTCGGAATGTAGATAGGTC+TGG | + | chr4_2:6695017-6695036 | Msa0585650:intron | 40.0% | |
| TGTATTGTTACTGGCATGCA+AGG | + | chr4_2:6695099-6695118 | Msa0585650:intron | 40.0% | |
| TTCCTACTACTTGCAGTTTG+GGG | + | chr4_2:6695415-6695434 | Msa0585650:intron | 40.0% | |
| CTTTAAATTGCCATTCCCGA+CGG | - | chr4_2:6695522-6695541 | None:intergenic | 40.0% | |
| ! | ATGCTGTTGCTTCATGGACT+TGG | + | chr4_2:6694543-6694562 | Msa0585650:CDS | 45.0% |
| ! | TGCTGTTGCTTCATGGACTT+GGG | + | chr4_2:6694544-6694563 | Msa0585650:CDS | 45.0% |
| GTCCTGATTGTAAACTTCCC+GGG | + | chr4_2:6694618-6694637 | Msa0585650:CDS | 45.0% | |
| TCCTGATTGTAAACTTCCCG+GGG | + | chr4_2:6694619-6694638 | Msa0585650:CDS | 45.0% | |
| TTAGCAGTAGCTTACTGAGC+GGG | - | chr4_2:6694652-6694671 | None:intergenic | 45.0% | |
| AACAAAGACAGACATCACGG+CGG | - | chr4_2:6695262-6695281 | None:intergenic | 45.0% | |
| CGTCGGGAATGGCAATTTAA+AGG | + | chr4_2:6695520-6695539 | Msa0585650:CDS | 45.0% | |
| ! | ATGCTGTTGCTTCATGGACT+TGG | + | chr4_2:6694543-6694562 | Msa0585650:CDS | 45.0% |
| ! | TGCTGTTGCTTCATGGACTT+GGG | + | chr4_2:6694544-6694563 | Msa0585650:CDS | 45.0% |
| GTCCTGATTGTAAACTTCCC+GGG | + | chr4_2:6694618-6694637 | Msa0585650:CDS | 45.0% | |
| TCCTGATTGTAAACTTCCCG+GGG | + | chr4_2:6694619-6694638 | Msa0585650:CDS | 45.0% | |
| TTAGCAGTAGCTTACTGAGC+GGG | - | chr4_2:6694652-6694671 | None:intergenic | 45.0% | |
| AACAAAGACAGACATCACGG+CGG | - | chr4_2:6695262-6695281 | None:intergenic | 45.0% | |
| CGTCGGGAATGGCAATTTAA+AGG | + | chr4_2:6695520-6695539 | Msa0585650:CDS | 45.0% | |
| TCCCCGGGAAGTTTACAATC+AGG | - | chr4_2:6694623-6694642 | None:intergenic | 50.0% | |
| CACCCCAAACTGCAAGTAGT+AGG | - | chr4_2:6695420-6695439 | None:intergenic | 50.0% | |
| CATTGGGCAATGTGCTTGTG+AGG | - | chr4_2:6695497-6695516 | None:intergenic | 50.0% | |
| TCCCCGGGAAGTTTACAATC+AGG | - | chr4_2:6694623-6694642 | None:intergenic | 50.0% | |
| CACCCCAAACTGCAAGTAGT+AGG | - | chr4_2:6695420-6695439 | None:intergenic | 50.0% | |
| CATTGGGCAATGTGCTTGTG+AGG | - | chr4_2:6695497-6695516 | None:intergenic | 50.0% | |
| CACATTGCCCAATGTGCCGT+CGG | + | chr4_2:6695503-6695522 | Msa0585650:CDS | 55.0% | |
| ACATTGCCCAATGTGCCGTC+GGG | + | chr4_2:6695504-6695523 | Msa0585650:CDS | 55.0% | |
| CACATTGCCCAATGTGCCGT+CGG | + | chr4_2:6695503-6695522 | Msa0585650:CDS | 55.0% | |
| ACATTGCCCAATGTGCCGTC+GGG | + | chr4_2:6695504-6695523 | Msa0585650:CDS | 55.0% | |
| GCCATTCCCGACGGCACATT+GGG | - | chr4_2:6695513-6695532 | None:intergenic | 60.0% | |
| TGCCATTCCCGACGGCACAT+TGG | - | chr4_2:6695514-6695533 | None:intergenic | 60.0% | |
| GCCATTCCCGACGGCACATT+GGG | - | chr4_2:6695513-6695532 | None:intergenic | 60.0% | |
| TGCCATTCCCGACGGCACAT+TGG | - | chr4_2:6695514-6695533 | None:intergenic | 60.0% | |
| ACTGAGCGGGCAGTCATCCC+CGG | - | chr4_2:6694639-6694658 | None:intergenic | 65.0% | |
| GCCCAATGTGCCGTCGGGAA+TGG | + | chr4_2:6695509-6695528 | Msa0585650:CDS | 65.0% | |
| ACTGAGCGGGCAGTCATCCC+CGG | - | chr4_2:6694639-6694658 | None:intergenic | 65.0% | |
| GCCCAATGTGCCGTCGGGAA+TGG | + | chr4_2:6695509-6695528 | Msa0585650:CDS | 65.0% | |
| CTGAGCGGGCAGTCATCCCC+GGG | - | chr4_2:6694638-6694657 | None:intergenic | 70.0% | |
| CTGAGCGGGCAGTCATCCCC+GGG | - | chr4_2:6694638-6694657 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 6694539 | 6695546 | 6694539 | ID=Msa0585650;Name=Msa0585650 |
| chr4_2 | mRNA | 6694539 | 6695546 | 6694539 | ID=Msa0585650-mRNA-1;Parent=Msa0585650;Name=Msa0585650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0|0.5|2|0|77 |
| chr4_2 | exon | 6694539 | 6694656 | 6694539 | ID=Msa0585650-mRNA-1:exon:1630;Parent=Msa0585650-mRNA-1 |
| chr4_2 | exon | 6695431 | 6695546 | 6695431 | ID=Msa0585650-mRNA-1:exon:1631;Parent=Msa0585650-mRNA-1 |
| chr4_2 | CDS | 6694539 | 6694656 | 6694539 | ID=Msa0585650-mRNA-1:cds;Parent=Msa0585650-mRNA-1 |
| chr4_2 | CDS | 6695431 | 6695546 | 6695431 | ID=Msa0585650-mRNA-1:cds;Parent=Msa0585650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
